
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/417030/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/READ-TP/3352996/READ-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=READ-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=READ-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=336, in cluster file=162, common to both=162
[1]  62 162
[1] "Amp Peak  1(1q21.3)"
[1] 3
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           48                           114 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           48                           114 
[1] "Amp Peak  2(1q32.2)"
[1] 3
      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                           48                           114 
      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                           48                           114 
[1] "Amp Peak  3(5q22.3)"
[1] 3
      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                           19                           143 
      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                           19                           143 
[1] "Amp Peak  4(6p21.1)"
[1] 3
      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                           52                           110 
      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                           52                           110 
[1] "Amp Peak  5(8p11.23)"
[1] 3
      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                            52                            110 
      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                            52                            110 
[1] "Amp Peak  6(8p11.21)"
[1] 3
      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                            69                             93 
      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                            69                             93 
[1] "Amp Peak  7(8q24.21)"
[1] 3
      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                           107                             55 
      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                           107                             55 
[1] "Amp Peak  8(10q22.2)"
[1] 3
      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                            11                            151 
      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                            11                            151 
[1] "Amp Peak  9(11p15.5)"
[1] 3
      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                            43                            119 
      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                            43                            119 
[1] "Amp Peak 10(11q13.3)"
[1] 3
      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                            26                            136 
      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                            26                            136 
[1] "Amp Peak 11(12p13.33)"
[1] 3
      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                             41                             121 
      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                             41                             121 
[1] "Amp Peak 12(12p12.1)"
[1] 3
      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                            40                            122 
      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                            40                            122 
[1] "Amp Peak 13(13q12.13)"
[1] 3
      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                            121                              41 
      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                            121                              41 
[1] "Amp Peak 14(13q12.2)"
[1] 3
      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                           120                             42 
      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                           120                             42 
[1] "Amp Peak 15(13q22.1)"
[1] 3
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                           117                             45 
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                           117                             45 
[1] "Amp Peak 16(15q26.1)"
[1] 3
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                            15                            147 
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                            15                            147 
[1] "Amp Peak 17(16p11.2)"
[1] 3
      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                            45                            117 
      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                            45                            117 
[1] "Amp Peak 18(17q12)"
[1] 3
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                          43                          119 
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                          43                          119 
[1] "Amp Peak 19(17q24.1)"
[1] 3
      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                            37                            125 
      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                            37                            125 
[1] "Amp Peak 20(19p13.2)"
[1] 3
      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                            32                            130 
      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                            32                            130 
[1] "Amp Peak 21(20q11.21)"
[1] 3
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                            143                              19 
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                            143                              19 
[1] "Amp Peak 22(20q11.23)"
[1] 3
      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                            144                              18 
      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                            144                              18 
[1] "Amp Peak 23(20q13.31)"
[1] 3
      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                            145                              17 
      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                            145                              17 
[1] "Amp Peak 24(Xp22.2)"
[1] 3
      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                           33                           129 
      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                           33                           129 
[1] "Amp Peak 25(Xq27.3)"
[1] 3
      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                           38                           124 
      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                           38                           124 
[1] "Del Peak  1(1p36.11)"
[1] 3
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                            71                             91 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                            71                             91 
[1] "Del Peak  2(1p33)"
[1] 3
      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                         49                         113 
      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                         49                         113 
[1] "Del Peak  3(1p13.2)"
[1] 3
      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                           51                           111 
      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                           51                           111 
[1] "Del Peak  4(2p12)"
[1] 3
      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                         17                         145 
      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                         17                         145 
[1] "Del Peak  5(3p14.2)"
[1] 3
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                           29                           133 
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                           29                           133 
[1] "Del Peak  6(3q26.31)"
[1] 3
      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                            17                            145 
      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                            17                            145 
[1] "Del Peak  7(4p13)"
[1] 3
      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                         58                         104 
      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                         58                         104 
[1] "Del Peak  8(4q22.1)"
[1] 3
      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                           72                            90 
      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                           72                            90 
[1] "Del Peak  9(4q35.1)"
[1] 3
      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                           72                            90 
      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                           72                            90 
[1] "Del Peak 10(5q11.2)"
[1] 3
      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                           49                           113 
      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                           49                           113 
[1] "Del Peak 11(5q22.2)"
[1] 3
      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                           55                           107 
      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                           55                           107 
[1] "Del Peak 12(6p25.3)"
[1] 3
      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                           24                           138 
      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                           24                           138 
[1] "Del Peak 13(6q26)"
[1] 3
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                         30                         132 
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                         30                         132 
[1] "Del Peak 14(7q31.1)"
[1] 3
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                            4                           158 
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                            4                           158 
[1] "Del Peak 15(8p23.2)"
[1] 3
      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                          100                            62 
      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                          100                            62 
[1] "Del Peak 16(8p11.21)"
[1] 3
      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                            24                            138 
      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                            24                            138 
[1] "Del Peak 17(10q21.1)"
[1] 3
      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                            37                            125 
      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                            37                            125 
[1] "Del Peak 18(10q25.2)"
[1] 3
      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                            47                            115 
      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                            47                            115 
[1] "Del Peak 19(11q22.3)"
[1] 3
      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                            37                            125 
      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                            37                            125 
[1] "Del Peak 20(12p13.1)"
[1] 3
      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                            33                            129 
      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                            33                            129 
[1] "Del Peak 21(12q21.33)"
[1] 3
      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                             28                             134 
      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                             28                             134 
[1] "Del Peak 22(14q11.2)"
[1] 3
      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                            67                             95 
      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                            67                             95 
[1] "Del Peak 23(14q31.1)"
[1] 3
      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                            69                             93 
      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                            69                             93 
[1] "Del Peak 24(15q22.33)"
[1] 3
      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                             75                              87 
      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                             75                              87 
[1] "Del Peak 25(16p13.3)"
[1] 3
      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                            13                            149 
      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                            13                            149 
[1] "Del Peak 26(16q23.1)"
[1] 3
      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                            23                            139 
      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                            23                            139 
[1] "Del Peak 27(17p12)"
[1] 3
      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                         110                           52 
      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                         110                           52 
[1] "Del Peak 28(17p11.2)"
[1] 3
      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                           102                             60 
      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                           102                             60 
[1] "Del Peak 29(17q25.3)"
[1] 3
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                            24                            138 
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                            24                            138 
[1] "Del Peak 30(18q21.2)"
[1] 3
      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                           143                             19 
      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                           143                             19 
[1] "Del Peak 31(18q22.1)"
[1] 3
      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                           138                             24 
      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                           138                             24 
[1] "Del Peak 32(19p13.3)"
[1] 3
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                            38                            124 
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                            38                            124 
[1] "Del Peak 33(20p12.1)"
[1] 3
      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                            60                            102 
      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                            60                            102 
[1] "Del Peak 34(20p12.1)"
[1] 3
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                            60                            102 
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                            60                            102 
[1] "Del Peak 35(21q11.2)"
[1] 3
      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                            70                             92 
      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                            70                             92 
[1] "Del Peak 36(22q13.31)"
[1] 3
      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                             66                              96 
      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                             66                              96 
[1] "Del Peak 37(Xp22.33)"
[1] 3
      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                            33                            129 
      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                            33                            129 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "DISTANT.METASTASIS"                    
[13] "LYMPH.NODE.METASTASIS"                 
[14] "COMPLETENESS.OF.RESECTION"             
[15] "NUMBER.OF.LYMPH.NODES"                 
[16] "TUMOR.STAGECODE"                       
[17] "NEOPLASM.DISEASESTAGE"                 
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 162 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
         594          482          358          323          412          581 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
         387          536          316          441          257          231 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3574 TCGA-AG-3575 TCGA-AG-3578 TCGA-AG-3580 
         193          223           NA          365           NA           NA 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3584 TCGA-AG-3586 TCGA-AG-3587 
          31           31           61           NA           31           31 
TCGA-AG-3591 TCGA-AG-3592 TCGA-AG-3593 TCGA-AG-3594 TCGA-AG-3598 TCGA-AG-3599 
          NA           NA           NA           NA           NA           30 
TCGA-AG-3600 TCGA-AG-3601 TCGA-AG-3602 TCGA-AG-3605 TCGA-AG-3608 TCGA-AG-3609 
          NA           NA           NA           30           NA           NA 
TCGA-AG-3611 TCGA-AG-3612 TCGA-AG-3725 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3728 
          NA           NA           NA          242           29           NA 
TCGA-AG-3731 TCGA-AG-3732 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3881 TCGA-AG-3882 
          31           NA           30           30           NA           NA 
TCGA-AG-3883 TCGA-AG-3885 TCGA-AG-3887 TCGA-AG-3890 TCGA-AG-3892 TCGA-AG-3893 
          31           NA           28           NA           31           30 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3898 TCGA-AG-3901 TCGA-AG-3902 TCGA-AG-3909 
          30           31           NA           NA           NA           NA 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4005 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4015 
          31           31           NA           31           31           NA 
TCGA-AG-4021 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
          NA           30          637          423          183          789 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
         700          518          484          396           31           31 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
         365          365         2130         1946          334           NA 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
        1519           NA           NA         1884         1246         1156 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
          15           44           21           22          140           55 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6621 TCGA-CI-6622 TCGA-CI-6623 
         310          183          183           NA          211          285 
TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 
         143          425         1825          243          334          335 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
         304          153          273          224          212          849 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
         212          608          180          121          152            8 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
        3635         1257         1741         3683          734         1566 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 
         991           15           73          232            5           66 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
         250           14          121           20          210          216 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
         187          108          121           83          159          237 
TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6464 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
          84           62           NA          103           26           66 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
          12           31           20           21           16           33 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
          23           14           NA         1451           NA          636 
Variable 1:'AGE':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=93,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=17,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DISTANT.METASTASIS':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'LYMPH.NODE.METASTASIS':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'TUMOR.STAGECODE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NEOPLASM.DISEASESTAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "HISTOLOGICAL.TYPE"                     
 [4] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [5] "DISTANT.METASTASIS"                    
 [6] "LYMPH.NODE.METASTASIS"                 
 [7] "COMPLETENESS.OF.RESECTION"             
 [8] "NUMBER.OF.LYMPH.NODES"                 
 [9] "TUMOR.STAGECODE"                       
[10] "NEOPLASM.DISEASESTAGE"                 
[1] "TUMOR.?STAGE" "9"           
[1] "stage2"
vv
 T1  T2  T3  T4 T4A T4B 
  9  29 109   5   8   1 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 162 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=47, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=2, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
DISTANT.METASTASIS, nv=4, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=9, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=21, binary=FALSE, numeric=TRUE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=11, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q21.3)
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1Q21.3) CNV       33  5
  AMP PEAK  1(1Q21.3) WILD-TYPE 86  6
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           38                            92 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                            5                             6 
$`AMP PEAK  1(1Q21.3) CNV`
TCGA-AF-2687 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 
       19.53        13.55        19.10        14.50         7.59         7.33 
TCGA-AG-3587 TCGA-AG-3999 TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A01N 
        1.02         1.02        23.01        17.03        13.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6643 
       70.03        63.98         1.94        38.93        38.01         0.69 
TCGA-AH-6644 TCGA-BM-6198 TCGA-CI-6623 TCGA-CI-6624 TCGA-DC-4749 TCGA-DC-6155 
        0.72        10.19         9.37         4.70        11.01         7.36 
TCGA-DC-6156 TCGA-DY-A1DE TCGA-DY-A1DF TCGA-EI-6506 TCGA-EI-6882 TCGA-EI-6884 
        6.97       121.08        24.13         7.63         3.55         2.73 
TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6810 TCGA-F5-6813 TCGA-F5-6863 TCGA-G5-6233 
        5.23         2.76         0.39         0.69         0.76        18.25 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

$`AMP PEAK  1(1Q21.3) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       15.85        11.77        10.62        12.72        17.62        10.39 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
        8.45         6.35        12.00         1.02         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        1.02         0.99         0.99         7.96         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        0.99         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A014 TCGA-AG-A016 
       20.94        13.91         6.02        25.94        15.91         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N 
        1.02        12.00        10.98        51.98        49.94        61.94 
TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 
       40.96         0.49         1.45         4.60         1.81         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        6.02         6.94        13.97        60.00         7.99        10.98 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
        9.99         5.03         8.98        27.91         6.97        19.99 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
        5.92         3.98         5.00         0.26       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 
       57.24        51.48        32.58         0.49         2.40         0.16 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
        2.17         8.22         0.46         3.98         0.66         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 
        7.10         6.15         3.98         7.79         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 
        0.85         2.17         1.02         0.66         0.53         1.08 
TCGA-F5-6864 TCGA-G5-6235 
        0.46        47.70 

      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                         0.39                          0.16 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                       121.08                        119.51 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                        9.780                         5.015 
[1] "0.4 - 121.1 (9.8)" "0.2 - 119.5 (5.0)"
                   TCGA-AF-2687                    TCGA-AF-2689 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  1(1Q21.3) WILD-TYPE"       "AMP PEAK  1(1Q21.3) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "AMP PEAK  1(1Q21.3) CNV" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
      "AMP PEAK  1(1Q21.3) CNV"       "AMP PEAK  1(1Q21.3) CNV" 
[1] "hr=" "1.5"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) CNV         21   27
  AMP PEAK  1(1Q21.3) WILD-TYPE   53   61
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  FEMALE                      21                            53
  MALE                        27                            61
D1V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) CNV         41    3
  AMP PEAK  1(1Q21.3) WILD-TYPE  102   10
                                clus
vv                               AMP PEAK  1(1Q21.3) CNV
  RECTAL ADENOCARCINOMA                               41
  RECTAL MUCINOUS ADENOCARCINOMA                       3
                                clus
vv                               AMP PEAK  1(1Q21.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    102
  RECTAL MUCINOUS ADENOCARCINOMA                            10
D1V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) CNV          4   44
  AMP PEAK  1(1Q21.3) WILD-TYPE    2  112
     clus
vv    AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  NO                        4                             2
  YES                      44                           112
                               vv
clus                            M0 M1 M1A MX
  AMP PEAK  1(1Q21.3) CNV       34  4   1  7
  AMP PEAK  1(1Q21.3) WILD-TYPE 89 18   1  6
D1V6, multiclass
     clus
vv    AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  M0                       34                            89
  M1                        4                            18
  M1A                       1                             1
  MX                        7                             6
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK  1(1Q21.3) CNV       23  8   0   3   0  7   1   4  1
  AMP PEAK  1(1Q21.3) WILD-TYPE 60 27   4   2   1 16   1   3  0
D1V7, multiclass
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  1(1Q21.3) CNV       33  1  3  0
  AMP PEAK  1(1Q21.3) WILD-TYPE 88  1  9  3
D1V8, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  R0                      33                            88
  R1                       1                             1
  R2                       3                             9
  RX                       0                             3
D1V9, continuous
D1V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  1(1Q21.3) CNV             7        3        12         0         1
  AMP PEAK  1(1Q21.3) WILD-TYPE      23        5        26         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  1(1Q21.3) CNV               1          3          5          7
  AMP PEAK  1(1Q21.3) WILD-TYPE         4          6         18          6
                               vv
clus                            STAGE IV STAGE IVA
  AMP PEAK  1(1Q21.3) CNV              5         2
  AMP PEAK  1(1Q21.3) WILD-TYPE       12         7
D1V11, multiclass

Clustering(2) Variable = Amp Peak  2(1q32.2)
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(1Q32.2) CNV       31  7
  AMP PEAK  2(1Q32.2) WILD-TYPE 88  4
      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                           38                            92 
      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                            7                             4 
$`AMP PEAK  2(1Q32.2) CNV`
TCGA-AF-2692 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3587 TCGA-AG-3999 
       13.55        14.50         7.59         7.33         1.02         1.02 
TCGA-AG-A00Y TCGA-AG-A015 TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A023 TCGA-AG-A026 
       23.01        13.02        12.00        70.03        51.98         1.94 
TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-BM-6198 
       38.93        38.01         0.49         0.69         0.72        10.19 
TCGA-CI-6623 TCGA-CI-6624 TCGA-DC-4749 TCGA-DC-6155 TCGA-DC-6156 TCGA-DY-A1DE 
        9.37         4.70        11.01         7.36         6.97       121.08 
TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6882 TCGA-EI-6884 TCGA-EI-6885 
       24.13        32.58         7.63         3.55         2.73         5.23 
TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6810 TCGA-F5-6813 TCGA-F5-6863 TCGA-G5-6233 
        2.76         2.04         0.39         0.69         0.76        18.25 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

$`AMP PEAK  2(1Q32.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 
       19.53        15.85        11.77        10.62        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 
       17.62        10.39         8.45         6.35        12.00         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 
        1.02         2.01         1.02         0.99         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 
        0.95         1.02         0.99         0.99         1.02         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         0.99        20.94        13.91         6.02        25.94 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01Y 
       17.03        15.91         1.02         1.02        12.00        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6897 
       10.98        49.94        61.94        40.96         1.45         4.60 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-CL-5917 
        1.81         6.02         6.02         6.94        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6157 
        7.99        10.98         9.99         5.03         8.98        27.91 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
        6.97        19.99         5.92         3.98         5.00         0.26 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 
      119.51        41.33        57.24        51.48         0.49         2.40 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
        0.16         2.17         8.22         0.46         3.98         0.66 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6917 TCGA-F5-6465 
        6.90         7.10         6.15         3.98         7.79         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 
        0.85         2.17         1.02         0.66         0.53         1.08 
TCGA-F5-6864 TCGA-G5-6235 
        0.46        47.70 

      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                         0.39                          0.16 
      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                       121.08                        119.51 
      AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE 
                         7.61                          5.97 
[1] "0.4 - 121.1 (7.6)" "0.2 - 119.5 (6.0)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  2(1Q32.2) WILD-TYPE"       "AMP PEAK  2(1Q32.2) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  2(1Q32.2) WILD-TYPE" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "AMP PEAK  2(1Q32.2) CNV" "AMP PEAK  2(1Q32.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
      "AMP PEAK  2(1Q32.2) CNV"       "AMP PEAK  2(1Q32.2) CNV" 
[1] "hr=" "3.2"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q32.2) CNV         22   26
  AMP PEAK  2(1Q32.2) WILD-TYPE   52   62
        clus
vv       AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE
  FEMALE                      22                            52
  MALE                        26                            62
D2V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q32.2) CNV         41    4
  AMP PEAK  2(1Q32.2) WILD-TYPE  102    9
                                clus
vv                               AMP PEAK  2(1Q32.2) CNV
  RECTAL ADENOCARCINOMA                               41
  RECTAL MUCINOUS ADENOCARCINOMA                       4
                                clus
vv                               AMP PEAK  2(1Q32.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    102
  RECTAL MUCINOUS ADENOCARCINOMA                             9
D2V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q32.2) CNV          3   45
  AMP PEAK  2(1Q32.2) WILD-TYPE    3  111
     clus
vv    AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE
  NO                        3                             3
  YES                      45                           111
                               vv
clus                            M0 M1 M1A MX
  AMP PEAK  2(1Q32.2) CNV       33  6   1  6
  AMP PEAK  2(1Q32.2) WILD-TYPE 90 16   1  7
D2V6, multiclass
     clus
vv    AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE
  M0                       33                            90
  M1                        6                            16
  M1A                       1                             1
  MX                        6                             7
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK  2(1Q32.2) CNV       21  9   0   3   0  7   1   5  1
  AMP PEAK  2(1Q32.2) WILD-TYPE 62 26   4   2   1 16   1   2  0
D2V7, multiclass
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  2(1Q32.2) CNV       32  1  3  0
  AMP PEAK  2(1Q32.2) WILD-TYPE 89  1  9  3
D2V8, multiclass
    clus
vv   AMP PEAK  2(1Q32.2) CNV AMP PEAK  2(1Q32.2) WILD-TYPE
  R0                      32                            89
  R1                       1                             1
  R2                       3                             9
  RX                       0                             3
D2V9, continuous
D2V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  2(1Q32.2) CNV             6        2        12         0         1
  AMP PEAK  2(1Q32.2) WILD-TYPE      24        6        26         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  2(1Q32.2) CNV               1          4          4          6
  AMP PEAK  2(1Q32.2) WILD-TYPE         4          5         19          7
                               vv
clus                            STAGE IV STAGE IVA
  AMP PEAK  2(1Q32.2) CNV              6         3
  AMP PEAK  2(1Q32.2) WILD-TYPE       11         6
D2V11, multiclass

Clustering(3) Variable = Amp Peak  3(5q22.3)
D3V1, survival
                               sevent
clus2                             0   1
  AMP PEAK  3(5Q22.3) CNV        17   0
  AMP PEAK  3(5Q22.3) WILD-TYPE 102  11
      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                           17                           113 
      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                            0                            11 
$`AMP PEAK  3(5Q22.3) CNV`
TCGA-AF-6655 TCGA-AG-3896 TCGA-AG-4007 TCGA-AG-A014 TCGA-AG-A01L TCGA-AG-A01N 
        6.35         1.02         1.02        15.91        12.00        12.00 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-DC-6683 TCGA-EI-6506 
       38.01         0.49         0.69         0.72         5.00         7.63 
TCGA-EI-6514 TCGA-EI-6883 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6811 
        7.10         3.98         2.76         3.39         1.02 

$`AMP PEAK  3(5Q22.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        17.62        10.39        14.50         8.45         7.59 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
        7.33        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        1.02         0.99         0.99         7.96         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 
       13.91         6.02        25.94        23.01        17.03        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
        1.02         1.02        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 
       49.94         1.94        38.93        61.94        40.96         1.45 
TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 
        4.60         1.81        10.19         6.02         6.02         6.94 
TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        9.37         4.70        13.97        60.00         7.99        10.98 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 
       11.01         9.99         5.03         8.98         7.36         6.97 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DT-5265 
       27.91         6.97        19.99         5.92         3.98         0.26 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
      119.51        41.33        57.24       121.08        24.13        51.48 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
       32.58         0.49         2.40         0.16         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 
        0.46         3.98         0.66         6.90         6.15         3.55 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6702 
        2.73         5.23         7.79         2.04         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        0.39         0.66         0.69         0.53         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.70        47.08        20.91 

      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                         0.49                          0.16 
      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                        38.01                        121.08 
      AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE 
                         3.98                          6.94 
[1] "0.5 - 38.0 (4.0)"  "0.2 - 121.1 (6.9)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "AMP PEAK  3(5Q22.3) CNV"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "AMP PEAK  3(5Q22.3) CNV"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "AMP PEAK  3(5Q22.3) CNV"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "AMP PEAK  3(5Q22.3) CNV"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "AMP PEAK  3(5Q22.3) CNV"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "AMP PEAK  3(5Q22.3) CNV"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
      "AMP PEAK  3(5Q22.3) CNV" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"AMP PEAK  3(5Q22.3) WILD-TYPE"       "AMP PEAK  3(5Q22.3) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK  3(5Q22.3) WILD-TYPE" "AMP PEAK  3(5Q22.3) WILD-TYPE" 
[1] "hr="     "2.8e+07"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(5Q22.3) CNV          8   11
  AMP PEAK  3(5Q22.3) WILD-TYPE   66   77
        clus
vv       AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE
  FEMALE                       8                            66
  MALE                        11                            77
D3V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(5Q22.3) CNV         19    0
  AMP PEAK  3(5Q22.3) WILD-TYPE  124   13
                                clus
vv                               AMP PEAK  3(5Q22.3) CNV
  RECTAL ADENOCARCINOMA                               19
  RECTAL MUCINOUS ADENOCARCINOMA                       0
                                clus
vv                               AMP PEAK  3(5Q22.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    124
  RECTAL MUCINOUS ADENOCARCINOMA                            13
D3V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(5Q22.3) CNV          0   19
  AMP PEAK  3(5Q22.3) WILD-TYPE    6  137
     clus
vv    AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE
  NO                        0                             6
  YES                      19                           137
                               vv
clus                             M0  M1 M1A  MX
  AMP PEAK  3(5Q22.3) CNV        14   4   0   1
  AMP PEAK  3(5Q22.3) WILD-TYPE 109  18   2  12
D3V6, multiclass
     clus
vv    AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE
  M0                       14                           109
  M1                        4                            18
  M1A                       0                             2
  MX                        1                            12
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK  3(5Q22.3) CNV        8  5   0   1   0  3   0   1  1
  AMP PEAK  3(5Q22.3) WILD-TYPE 75 30   4   4   1 20   2   6  0
D3V7, multiclass
                               vv
clus                             R0  R1  R2  RX
  AMP PEAK  3(5Q22.3) CNV        14   0   2   0
  AMP PEAK  3(5Q22.3) WILD-TYPE 107   2  10   3
D3V8, multiclass
    clus
vv   AMP PEAK  3(5Q22.3) CNV AMP PEAK  3(5Q22.3) WILD-TYPE
  R0                      14                           107
  R1                       0                             2
  R2                       2                            10
  RX                       0                             3
D3V9, continuous
D3V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  3(5Q22.3) CNV             2        0         4         0         1
  AMP PEAK  3(5Q22.3) WILD-TYPE      28        8        34         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  3(5Q22.3) CNV               0          1          4          2
  AMP PEAK  3(5Q22.3) WILD-TYPE         5          8         19         11
                               vv
clus                            STAGE IV STAGE IVA
  AMP PEAK  3(5Q22.3) CNV              3         0
  AMP PEAK  3(5Q22.3) WILD-TYPE       14         9
D3V11, multiclass

Clustering(4) Variable = Amp Peak  4(6p21.1)
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(6P21.1) CNV       35  4
  AMP PEAK  4(6P21.1) WILD-TYPE 84  7
      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                           39                            91 
      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                            4                             7 
$`AMP PEAK  4(6P21.1) CNV`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 
       19.53        10.62        19.10        17.62        10.39        14.50 
TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3883 TCGA-AG-3896 TCGA-AG-4001 
        7.59         1.02         1.02         1.02         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01N 
        1.02         0.99        13.02         1.02        12.00        12.00 
TCGA-AH-6644 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6623 TCGA-DC-4745 TCGA-DC-5869 
        0.72        10.19         6.02         9.37        10.98         5.03 
TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6682 TCGA-DY-A1DE TCGA-DY-A1DF 
        8.98         6.97        27.91         3.98       121.08        24.13 
TCGA-DY-A1DG TCGA-EI-6506 TCGA-EI-6511 TCGA-EI-6512 TCGA-F5-6465 TCGA-F5-6702 
       51.48         7.63         3.98         0.66         3.39         2.17 
TCGA-F5-6810 TCGA-G5-6233 TCGA-G5-6641 
        0.39        18.25        20.91 

$`AMP PEAK  4(6P21.1) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-5654 TCGA-AF-6655 
       15.85        11.77        13.55        12.72         8.45         6.35 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 
        7.33        12.00         1.02         2.01         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4008 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A01J TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
       15.91         1.02        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6620 
        0.49         1.45         0.69         4.60         1.81         6.02 
TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4749 
        6.94         4.70        13.97        60.00         7.99        11.01 
TCGA-DC-5337 TCGA-DC-6155 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 
        9.99         7.36         6.97        19.99         5.92         5.00 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1H8 TCGA-EF-5830 
        0.26       119.51        41.33        57.24        32.58         0.49 
TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6513 
        2.40         0.16         2.17         8.22         0.46         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        7.10         6.15         3.55         3.98         2.73         5.23 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6811 TCGA-F5-6812 
        7.79         2.76         2.04         0.85         1.02         0.66 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 
        0.69         0.53         1.08         0.76         0.46        47.70 
TCGA-G5-6572 
       47.08 

      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                         0.39                          0.16 
      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                       121.08                        119.51 
      AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE 
                         7.63                          6.02 
[1] "0.4 - 121.1 (7.6)" "0.2 - 119.5 (6.0)"
                   TCGA-AF-2687                    TCGA-AF-2689 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "AMP PEAK  4(6P21.1) CNV"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"AMP PEAK  4(6P21.1) WILD-TYPE" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "AMP PEAK  4(6P21.1) CNV" "AMP PEAK  4(6P21.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK  4(6P21.1) WILD-TYPE"       "AMP PEAK  4(6P21.1) CNV" 
[1] "hr=" "2.3"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) CNV         21   31
  AMP PEAK  4(6P21.1) WILD-TYPE   53   57
        clus
vv       AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE
  FEMALE                      21                            53
  MALE                        31                            57
D4V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) CNV         49    1
  AMP PEAK  4(6P21.1) WILD-TYPE   94   12
                                clus
vv                               AMP PEAK  4(6P21.1) CNV
  RECTAL ADENOCARCINOMA                               49
  RECTAL MUCINOUS ADENOCARCINOMA                       1
                                clus
vv                               AMP PEAK  4(6P21.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     94
  RECTAL MUCINOUS ADENOCARCINOMA                            12
D4V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(6P21.1) CNV          4   48
  AMP PEAK  4(6P21.1) WILD-TYPE    2  108
     clus
vv    AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE
  NO                        4                             2
  YES                      48                           108
                               vv
clus                            M0 M1 M1A MX
  AMP PEAK  4(6P21.1) CNV       31 12   1  7
  AMP PEAK  4(6P21.1) WILD-TYPE 92 10   1  6
D4V6, multiclass
     clus
vv    AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE
  M0                       31                            92
  M1                       12                            10
  M1A                       1                             1
  MX                        7                             6
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK  4(6P21.1) CNV       18 12   3   1   1 13   0   3  1
  AMP PEAK  4(6P21.1) WILD-TYPE 65 23   1   4   0 10   2   4  0
D4V7, multiclass
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK  4(6P21.1) CNV       35  0  7  0
  AMP PEAK  4(6P21.1) WILD-TYPE 86  2  5  3
D4V8, multiclass
    clus
vv   AMP PEAK  4(6P21.1) CNV AMP PEAK  4(6P21.1) WILD-TYPE
  R0                      35                            86
  R1                       0                             2
  R2                       7                             5
  RX                       0                             3
D4V9, continuous
D4V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  4(6P21.1) CNV             8        1         8         0         1
  AMP PEAK  4(6P21.1) WILD-TYPE      22        7        30         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  4(6P21.1) CNV               2          1         10          6
  AMP PEAK  4(6P21.1) WILD-TYPE         3          8         13          7
                               vv
clus                            STAGE IV STAGE IVA
  AMP PEAK  4(6P21.1) CNV              8         5
  AMP PEAK  4(6P21.1) WILD-TYPE        9         4
D4V11, multiclass

Clustering(5) Variable = Amp Peak  5(8p11.23)
D5V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  5(8P11.23) CNV       37  7
  AMP PEAK  5(8P11.23) WILD-TYPE 82  4
      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                            44                             86 
      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                             7                              4 
$`AMP PEAK  5(8P11.23) CNV`
TCGA-AF-3911 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3605 TCGA-AG-3887 
       17.62         6.35         7.33         1.02         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A014 
        0.99         1.02         1.02         1.02         0.99        15.91 
TCGA-AG-A01N TCGA-AG-A023 TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 
       12.00        51.98        38.01         0.49         0.69         0.72 
TCGA-CI-6619 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-6156 
        6.02         9.37         4.70        60.00         7.99         6.97 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF 
       27.91         6.97         3.98        41.33        57.24        24.13 
TCGA-DY-A1DG TCGA-EF-5830 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6514 TCGA-EI-6883 
       51.48         0.49         8.22         3.98         7.10         3.98 
TCGA-EI-6884 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6864 
        2.73         3.39         2.17         1.02         0.69         0.46 
TCGA-G5-6233 TCGA-G5-6572 
       18.25        47.08 

$`AMP PEAK  5(8P11.23) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AG-3575 
       12.72        10.39        14.50         8.45         7.59        12.00 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         2.01         1.02         1.02         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3892 
        0.95         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        0.99         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       25.94        23.01        17.03        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6897 TCGA-AH-6903 
       38.93        61.94        40.96         1.45         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-DC-4745 TCGA-DC-4749 
       10.19         6.02         6.94        13.97        10.98        11.01 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6160 TCGA-DC-6681 
        9.99         5.03         8.98         7.36        19.99         5.92 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DE TCGA-DY-A1H8 TCGA-EF-5831 
        5.00         0.26       119.51       121.08        32.58         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 
        7.63         0.16         2.17         0.46         0.66         6.90 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 
        6.15         3.55         5.23         7.79         2.76         2.04 
TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        0.85         0.39         0.66         0.53         1.08         0.76 
TCGA-G5-6235 TCGA-G5-6641 
       47.70        20.91 

      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                          0.46                           0.16 
      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                         60.00                         121.08 
      AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE 
                          5.36                           6.92 
[1] "0.5 - 60.0 (5.4)"  "0.2 - 121.1 (6.9)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK  5(8P11.23) CNV"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  5(8P11.23) WILD-TYPE" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  5(8P11.23) WILD-TYPE"       "AMP PEAK  5(8P11.23) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK  5(8P11.23) CNV" "AMP PEAK  5(8P11.23) WILD-TYPE" 
[1] "hr=" "2.9"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(8P11.23) CNV         18   34
  AMP PEAK  5(8P11.23) WILD-TYPE   56   54
        clus
vv       AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE
  FEMALE                       18                             56
  MALE                         34                             54
D5V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(8P11.23) CNV         50    2
  AMP PEAK  5(8P11.23) WILD-TYPE   93   11
                                clus
vv                               AMP PEAK  5(8P11.23) CNV
  RECTAL ADENOCARCINOMA                                50
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               AMP PEAK  5(8P11.23) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      93
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D5V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(8P11.23) CNV          2   50
  AMP PEAK  5(8P11.23) WILD-TYPE    4  106
     clus
vv    AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE
  NO                         2                              4
  YES                       50                            106
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK  5(8P11.23) CNV       35 10   1  5
  AMP PEAK  5(8P11.23) WILD-TYPE 88 12   1  8
D5V6, multiclass
     clus
vv    AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE
  M0                        35                             88
  M1                        10                             12
  M1A                        1                              1
  MX                         5                              8
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK  5(8P11.23) CNV       24 12   0   0   1  9   0   4  1
  AMP PEAK  5(8P11.23) WILD-TYPE 59 23   4   5   0 14   2   3  0
D5V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  5(8P11.23) CNV       30  0  7  2
  AMP PEAK  5(8P11.23) WILD-TYPE 91  2  5  1
D5V8, multiclass
    clus
vv   AMP PEAK  5(8P11.23) CNV AMP PEAK  5(8P11.23) WILD-TYPE
  R0                       30                             91
  R1                        0                              2
  R2                        7                              5
  RX                        2                              1
D5V9, continuous
D5V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  5(8P11.23) CNV             6        2        13         1         2
  AMP PEAK  5(8P11.23) WILD-TYPE      24        6        25         1         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  5(8P11.23) CNV               0          2          5          7
  AMP PEAK  5(8P11.23) WILD-TYPE         5          7         18          6
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK  5(8P11.23) CNV              8         3
  AMP PEAK  5(8P11.23) WILD-TYPE        9         6
D5V11, multiclass

Clustering(6) Variable = Amp Peak  6(8p11.21)
D6V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  6(8P11.21) CNV       49  8
  AMP PEAK  6(8P11.21) WILD-TYPE 70  3
      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                            57                             73 
      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                             8                              3 
$`AMP PEAK  6(8P11.21) CNV`
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3586 TCGA-AG-3605 TCGA-AG-3883 
        6.35         7.33         1.02         1.02         0.99         1.02 
TCGA-AG-3887 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A00Y 
        0.92         1.02         1.02         1.02         0.99        23.01 
TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A023 
       15.91         1.02         1.02        12.00        63.98        51.98 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 
        1.94        38.93        38.01         0.49         1.45         0.69 
TCGA-AH-6644 TCGA-CI-6619 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-5917 TCGA-CL-5918 
        0.72         6.02         9.37         4.70        60.00         7.99 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 
        7.36         6.97        27.91         6.97         3.98         5.00 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-EF-5830 
      119.51        41.33        57.24       121.08        24.13         0.49 
TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6514 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        8.22         3.98         7.10         3.98         2.73         5.23 
TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
        3.39         2.17         1.02         0.76         0.46        18.25 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       47.70        47.08        20.91 

$`AMP PEAK  6(8P11.21) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        17.62        10.39        14.50         8.45         7.59 
TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
       12.00         1.02         2.01         1.02         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 
        0.95         1.02         0.99         0.99         1.02         0.99 
TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        0.99         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 
       25.94        17.03        13.02        12.00        70.03        10.98 
TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
       49.94        61.94        40.96         4.60         1.81        10.19 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
        6.02         6.94        13.97        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A1DG 
        5.03         8.98        19.99         5.92         0.26        51.48 
TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 
       32.58         2.40         7.63         0.16         2.17         0.46 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7002 
        0.66         6.90         6.15         3.55         7.79         2.76 
TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        2.04         0.85         0.39         0.66         0.69         0.53 
TCGA-F5-6861 
        1.08 

      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                          0.46                           0.16 
      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                        121.08                          70.03 
      AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE 
                          5.23                           6.94 
[1] "0.5 - 121.1 (5.2)" "0.2 - 70.0 (6.9)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK  6(8P11.21) CNV" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  6(8P11.21) WILD-TYPE"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  6(8P11.21) WILD-TYPE" "AMP PEAK  6(8P11.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK  6(8P11.21) CNV"       "AMP PEAK  6(8P11.21) CNV" 
[1] "hr=" "1.6"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(8P11.21) CNV         30   39
  AMP PEAK  6(8P11.21) WILD-TYPE   44   49
        clus
vv       AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE
  FEMALE                       30                             44
  MALE                         39                             49
D6V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(8P11.21) CNV         64    3
  AMP PEAK  6(8P11.21) WILD-TYPE   79   10
                                clus
vv                               AMP PEAK  6(8P11.21) CNV
  RECTAL ADENOCARCINOMA                                64
  RECTAL MUCINOUS ADENOCARCINOMA                        3
                                clus
vv                               AMP PEAK  6(8P11.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      79
  RECTAL MUCINOUS ADENOCARCINOMA                             10
D6V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(8P11.21) CNV          1   68
  AMP PEAK  6(8P11.21) WILD-TYPE    5   88
     clus
vv    AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE
  NO                         1                              5
  YES                       68                             88
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK  6(8P11.21) CNV       47 13   1  7
  AMP PEAK  6(8P11.21) WILD-TYPE 76  9   1  6
D6V6, multiclass
     clus
vv    AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE
  M0                        47                             76
  M1                        13                              9
  M1A                        1                              1
  MX                         7                              6
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK  6(8P11.21) CNV       34 14   0   3   1 11   0   4  1
  AMP PEAK  6(8P11.21) WILD-TYPE 49 21   4   2   0 12   2   3  0
D6V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  6(8P11.21) CNV       41  2  9  2
  AMP PEAK  6(8P11.21) WILD-TYPE 80  0  3  1
D6V8, multiclass
    clus
vv   AMP PEAK  6(8P11.21) CNV AMP PEAK  6(8P11.21) WILD-TYPE
  R0                       41                             80
  R1                        2                              0
  R2                        9                              3
  RX                        2                              1
D6V9, continuous
D6V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  6(8P11.21) CNV             8        4        18         1         2
  AMP PEAK  6(8P11.21) WILD-TYPE      22        4        20         1         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  6(8P11.21) CNV               1          4          7          6
  AMP PEAK  6(8P11.21) WILD-TYPE         4          5         16          7
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK  6(8P11.21) CNV             12         2
  AMP PEAK  6(8P11.21) WILD-TYPE        5         7
D6V11, multiclass

Clustering(7) Variable = Amp Peak  7(8q24.21)
D7V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  7(8Q24.21) CNV       77  9
  AMP PEAK  7(8Q24.21) WILD-TYPE 42  2
      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                            86                             44 
      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                             9                              2 
$`AMP PEAK  7(8Q24.21) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       19.53        15.85        11.77        10.62        13.55        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 
       17.62        10.39         8.45         6.35         7.33         1.02 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        1.02         1.02         0.99         7.96         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 
        0.99         1.02         0.92         1.02         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02         1.02         0.99        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
       15.91         1.02         1.02        12.00        70.03        63.98 
TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       51.98         1.94        61.94        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6623 
        1.45         0.69         0.72        10.19         6.02         9.37 
TCGA-CI-6624 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5869 
        4.70        60.00         7.99        10.98        11.01         5.03 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 
        8.98         7.36         6.97        27.91         6.97         3.98 
TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1H8 
        5.00       119.51        41.33        57.24        24.13        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6514 
        0.49         2.40         8.22         3.98         6.90         7.10 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6810 
        3.98         2.73         5.23         3.39         2.17         0.39 
TCGA-F5-6811 TCGA-F5-6814 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        1.02         0.53         0.76         0.46        18.25        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

$`AMP PEAK  7(8Q24.21) WILD-TYPE`
TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 
       19.10        14.50         7.59        12.00         1.02         2.01 
TCGA-AG-3599 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-A002 
        0.99         0.99         1.02         0.99         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A015 TCGA-AG-A01L TCGA-AG-A020 TCGA-AG-A025 
       13.91         6.02        13.02        12.00        10.98        49.94 
TCGA-AG-A02G TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 
       38.93         4.60         1.81         6.02         6.94        13.97 
TCGA-DC-5337 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A1DE TCGA-DY-A1DG 
        9.99        19.99         5.92         0.26       121.08        51.48 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6881 
        7.63         0.16         2.17         0.46         0.66         6.15 
TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6812 
        3.55         7.79         2.76         2.04         0.85         0.66 
TCGA-F5-6813 TCGA-F5-6861 
        0.69         1.08 

      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                          0.39                           0.16 
      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                        119.51                         121.08 
      AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE 
                          6.97                           5.97 
[1] "0.4 - 119.5 (7.0)" "0.2 - 121.1 (6.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  7(8Q24.21) WILD-TYPE"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  7(8Q24.21) WILD-TYPE" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "AMP PEAK  7(8Q24.21) CNV" "AMP PEAK  7(8Q24.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK  7(8Q24.21) CNV"       "AMP PEAK  7(8Q24.21) CNV" 
[1] "hr=" "1.4"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) CNV         48   59
  AMP PEAK  7(8Q24.21) WILD-TYPE   26   29
        clus
vv       AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE
  FEMALE                       48                             26
  MALE                         59                             29
D7V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) CNV         99    5
  AMP PEAK  7(8Q24.21) WILD-TYPE   44    8
                                clus
vv                               AMP PEAK  7(8Q24.21) CNV
  RECTAL ADENOCARCINOMA                                99
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               AMP PEAK  7(8Q24.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      44
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D7V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(8Q24.21) CNV          5  102
  AMP PEAK  7(8Q24.21) WILD-TYPE    1   54
     clus
vv    AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE
  NO                         5                              1
  YES                      102                             54
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK  7(8Q24.21) CNV       78 17   1  9
  AMP PEAK  7(8Q24.21) WILD-TYPE 45  5   1  4
D7V6, multiclass
     clus
vv    AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE
  M0                        78                             45
  M1                        17                              5
  M1A                        1                              1
  MX                         9                              4
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK  7(8Q24.21) CNV       54 21   3   3   1 17   1   5  1
  AMP PEAK  7(8Q24.21) WILD-TYPE 29 14   1   2   0  6   1   2  0
D7V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  7(8Q24.21) CNV       76  2 10  2
  AMP PEAK  7(8Q24.21) WILD-TYPE 45  0  2  1
D7V8, multiclass
    clus
vv   AMP PEAK  7(8Q24.21) CNV AMP PEAK  7(8Q24.21) WILD-TYPE
  R0                       76                             45
  R1                        2                              0
  R2                       10                              2
  RX                        2                              1
D7V9, continuous
D7V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  7(8Q24.21) CNV            16        6        28         1         2
  AMP PEAK  7(8Q24.21) WILD-TYPE      14        2        10         1         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  7(8Q24.21) CNV               3          5         13         10
  AMP PEAK  7(8Q24.21) WILD-TYPE         2          4         10          3
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK  7(8Q24.21) CNV             14         3
  AMP PEAK  7(8Q24.21) WILD-TYPE        3         6
D7V11, multiclass

Clustering(8) Variable = Amp Peak  8(10q22.2)
D8V1, survival
                                sevent
clus2                              0   1
  AMP PEAK  8(10Q22.2) CNV         9   0
  AMP PEAK  8(10Q22.2) WILD-TYPE 110  11
      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                             9                            121 
      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                             0                             11 
$`AMP PEAK  8(10Q22.2) CNV`
TCGA-AF-2689 TCGA-AG-3587 TCGA-AG-3999 TCGA-AG-A014 TCGA-AG-A01W TCGA-AG-A020 
       15.85         1.02         1.02        15.91        70.03        10.98 
TCGA-BM-6198 TCGA-CI-6619 TCGA-DC-4745 
       10.19         6.02        10.98 

$`AMP PEAK  8(10Q22.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       17.62        10.39        14.50         8.45         7.59         6.35 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
        7.33        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        0.99         0.99         7.96         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        1.02         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 
       13.91         6.02        25.94        23.01        17.03        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A023 
        1.02         1.02        12.00        12.00        63.98        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
        0.49         1.45         0.69         0.72         4.60         1.81 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 
        7.99        11.01         9.99         5.03         8.98         7.36 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 
        6.97        27.91         6.97        19.99         5.92         3.98 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
        5.00         0.26       119.51        41.33        57.24       121.08 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
       24.13        51.48        32.58         0.49         2.40         7.63 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
        0.16         2.17         8.22         0.46         3.98         0.66 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
        6.90         7.10         6.15         3.55         3.98         2.73 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
        5.23         7.79         2.76         2.04         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        2.17         0.39         1.02         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        1.08         0.76         0.46        18.25        47.70        47.08 
TCGA-G5-6641 
       20.91 

      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                          1.02                           0.16 
      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                         70.03                         121.08 
      AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE 
                         10.98                           6.02 
[1] "1.0 - 70.0 (11.0)" "0.2 - 121.1 (6.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "AMP PEAK  8(10Q22.2) CNV"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "AMP PEAK  8(10Q22.2) CNV"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "AMP PEAK  8(10Q22.2) CNV" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "AMP PEAK  8(10Q22.2) CNV"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK  8(10Q22.2) WILD-TYPE"       "AMP PEAK  8(10Q22.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  8(10Q22.2) WILD-TYPE" "AMP PEAK  8(10Q22.2) WILD-TYPE" 
[1] "hr="     "7.7e+07"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(10Q22.2) CNV          6    5
  AMP PEAK  8(10Q22.2) WILD-TYPE   68   83
        clus
vv       AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE
  FEMALE                        6                             68
  MALE                          5                             83
D8V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(10Q22.2) CNV          9    1
  AMP PEAK  8(10Q22.2) WILD-TYPE  134   12
                                clus
vv                               AMP PEAK  8(10Q22.2) CNV
  RECTAL ADENOCARCINOMA                                 9
  RECTAL MUCINOUS ADENOCARCINOMA                        1
                                clus
vv                               AMP PEAK  8(10Q22.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     134
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D8V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(10Q22.2) CNV          1   10
  AMP PEAK  8(10Q22.2) WILD-TYPE    5  146
     clus
vv    AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE
  NO                         1                              5
  YES                       10                            146
                                vv
clus                              M0  M1 M1A  MX
  AMP PEAK  8(10Q22.2) CNV         8   2   0   0
  AMP PEAK  8(10Q22.2) WILD-TYPE 115  20   2  13
D8V6, multiclass
     clus
vv    AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE
  M0                         8                            115
  M1                         2                             20
  M1A                        0                              2
  MX                         0                             13
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK  8(10Q22.2) CNV        5  2   1   0   1  2   0   0  0
  AMP PEAK  8(10Q22.2) WILD-TYPE 78 33   3   5   0 21   2   7  1
D8V7, multiclass
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK  8(10Q22.2) CNV         9   0   0   0
  AMP PEAK  8(10Q22.2) WILD-TYPE 112   2  12   3
D8V8, multiclass
    clus
vv   AMP PEAK  8(10Q22.2) CNV AMP PEAK  8(10Q22.2) WILD-TYPE
  R0                        9                            112
  R1                        0                              2
  R2                        0                             12
  RX                        0                              3
D8V9, continuous
D8V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  8(10Q22.2) CNV             2        1         2         0         0
  AMP PEAK  8(10Q22.2) WILD-TYPE      28        7        36         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  8(10Q22.2) CNV               1          0          2          1
  AMP PEAK  8(10Q22.2) WILD-TYPE         4          9         21         12
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK  8(10Q22.2) CNV              2         0
  AMP PEAK  8(10Q22.2) WILD-TYPE       15         9
D8V11, multiclass

Clustering(9) Variable = Amp Peak  9(11p15.5)
D9V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  9(11P15.5) CNV       32  2
  AMP PEAK  9(11P15.5) WILD-TYPE 87  9
      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                            34                             96 
      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                             2                              9 
$`AMP PEAK  9(11P15.5) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 
       15.85        11.77        13.55        10.39         8.45         6.35 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3727 TCGA-AG-3894 
        7.33        12.00         2.01         1.02         0.95         0.99 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A01N TCGA-AH-6897 TCGA-BM-6198 TCGA-CI-6623 
        1.02         1.02        12.00         4.60        10.19         9.37 
TCGA-CL-4957 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6157 
       13.97        11.01         9.99         5.03         8.98        27.91 
TCGA-DC-6160 TCGA-DY-A0XA TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6514 
       19.99       119.51         0.49         2.40         7.63         7.10 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6861 TCGA-G5-6233 
        0.39         1.02         1.08        18.25 

$`AMP PEAK  9(11P15.5) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 
       19.53        10.62        19.10        12.72        17.62        14.50 
TCGA-AF-6136 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 
        7.59         1.02         1.02         1.02         0.99         0.99 
TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 
        7.96         1.02         0.99         0.99         1.02         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-4022 
        1.02         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01W 
       15.91        13.02         1.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       63.98        10.98        51.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 
       61.94        40.96        38.01         0.49         1.45         0.69 
TCGA-AH-6644 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 
        0.72         1.81         6.02         6.02         6.94         4.70 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6158 
       60.00         7.99        10.98         7.36         6.97         6.97 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DD 
        5.92         3.98         5.00         0.26        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EI-6507 TCGA-EI-6508 
      121.08        24.13        51.48        32.58         0.16         2.17 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 
        8.22         0.46         3.98         0.66         6.90         6.15 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 
        3.55         3.98         2.73         5.23         7.79         2.76 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6812 TCGA-F5-6813 
        2.04         3.39         0.85         2.17         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.53         0.76         0.46        47.70        47.08        20.91 

      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                          0.39                           0.16 
      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                        119.51                         121.08 
      AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE 
                          8.04                           5.97 
[1] "0.4 - 119.5 (8.0)" "0.2 - 121.1 (6.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK  9(11P15.5) CNV"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK  9(11P15.5) WILD-TYPE"       "AMP PEAK  9(11P15.5) CNV" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK  9(11P15.5) CNV" "AMP PEAK  9(11P15.5) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK  9(11P15.5) WILD-TYPE" "AMP PEAK  9(11P15.5) WILD-TYPE" 
[1] "hr=" "1.5"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P15.5) CNV         20   23
  AMP PEAK  9(11P15.5) WILD-TYPE   54   65
        clus
vv       AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE
  FEMALE                       20                             54
  MALE                         23                             65
D9V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P15.5) CNV         41    1
  AMP PEAK  9(11P15.5) WILD-TYPE  102   12
                                clus
vv                               AMP PEAK  9(11P15.5) CNV
  RECTAL ADENOCARCINOMA                                41
  RECTAL MUCINOUS ADENOCARCINOMA                        1
                                clus
vv                               AMP PEAK  9(11P15.5) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     102
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D9V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11P15.5) CNV          2   41
  AMP PEAK  9(11P15.5) WILD-TYPE    4  115
     clus
vv    AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE
  NO                         2                              4
  YES                       41                            115
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK  9(11P15.5) CNV       34  6   0  2
  AMP PEAK  9(11P15.5) WILD-TYPE 89 16   2 11
D9V6, multiclass
     clus
vv    AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE
  M0                        34                             89
  M1                         6                             16
  M1A                        0                              2
  MX                         2                             11
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK  9(11P15.5) CNV       27  6   2   0   0  6   0   2  0
  AMP PEAK  9(11P15.5) WILD-TYPE 56 29   2   5   1 17   2   5  1
D9V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK  9(11P15.5) CNV       34  0  3  0
  AMP PEAK  9(11P15.5) WILD-TYPE 87  2  9  3
D9V8, multiclass
    clus
vv   AMP PEAK  9(11P15.5) CNV AMP PEAK  9(11P15.5) WILD-TYPE
  R0                       34                             87
  R1                        0                              2
  R2                        3                              9
  RX                        0                              3
D9V9, continuous
D9V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK  9(11P15.5) CNV             9        2        13         1         1
  AMP PEAK  9(11P15.5) WILD-TYPE      21        6        25         1         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK  9(11P15.5) CNV               2          3          3          1
  AMP PEAK  9(11P15.5) WILD-TYPE         3          6         20         12
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK  9(11P15.5) CNV              5         1
  AMP PEAK  9(11P15.5) WILD-TYPE       12         8
D9V11, multiclass

Clustering(10) Variable = Amp Peak 10(11q13.3)
D10V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 10(11Q13.3) CNV       22  1
  AMP PEAK 10(11Q13.3) WILD-TYPE 97 10
      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                            23                            107 
      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                             1                             10 
$`AMP PEAK 10(11Q13.3) CNV`
TCGA-AF-2690 TCGA-AF-3913 TCGA-AG-3575 TCGA-AG-3883 TCGA-AG-4001 TCGA-AG-4007 
       11.77        10.39        12.00         1.02         1.02         1.02 
TCGA-AG-A01N TCGA-AG-A01Y TCGA-AH-6897 TCGA-CI-6623 TCGA-CI-6624 TCGA-DC-4749 
       12.00        63.98         4.60         9.37         4.70        11.01 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DT-5265 
        5.03         8.98         6.97        27.91         6.97         0.26 
TCGA-DY-A1DE TCGA-EI-6514 TCGA-EI-6885 TCGA-F5-6810 TCGA-F5-6811 
      121.08         7.10         5.23         0.39         1.02 

$`AMP PEAK 10(11Q13.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        15.85        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       17.62        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         0.99        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       23.01        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        10.98        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 
       38.93        61.94        40.96        38.01         0.49         1.45 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
        0.69         0.72         1.81        10.19         6.02         6.02 
TCGA-CI-6622 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 
        6.94        13.97        60.00         7.99        10.98         9.99 
TCGA-DC-6155 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA 
        7.36        19.99         5.92         3.98         5.00       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
       41.33        57.24        24.13        51.48        32.58         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
        2.40         7.63         0.16         2.17         8.22         0.46 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        3.98         0.66         6.90         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
        2.73         7.79         2.76         2.04         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        2.17         0.66         0.69         0.53         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.70        47.08        20.91 

      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                          0.26                           0.16 
      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                        121.08                         119.51 
      AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE 
                          6.97                           6.02 
[1] "0.3 - 121.1 (7.0)" "0.2 - 119.5 (6.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 10(11Q13.3) CNV" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 10(11Q13.3) WILD-TYPE"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK 10(11Q13.3) CNV"       "AMP PEAK 10(11Q13.3) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 10(11Q13.3) WILD-TYPE" "AMP PEAK 10(11Q13.3) WILD-TYPE" 
[1] "hr=" "2.2"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.3) CNV         12   14
  AMP PEAK 10(11Q13.3) WILD-TYPE   62   74
        clus
vv       AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE
  FEMALE                       12                             62
  MALE                         14                             74
D10V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.3) CNV         25    1
  AMP PEAK 10(11Q13.3) WILD-TYPE  118   12
                                clus
vv                               AMP PEAK 10(11Q13.3) CNV
  RECTAL ADENOCARCINOMA                                25
  RECTAL MUCINOUS ADENOCARCINOMA                        1
                                clus
vv                               AMP PEAK 10(11Q13.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     118
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D10V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 10(11Q13.3) CNV          0   26
  AMP PEAK 10(11Q13.3) WILD-TYPE    6  130
     clus
vv    AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE
  NO                         0                              6
  YES                       26                            130
                                vv
clus                              M0  M1 M1A  MX
  AMP PEAK 10(11Q13.3) CNV        19   5   1   1
  AMP PEAK 10(11Q13.3) WILD-TYPE 104  17   1  12
D10V6, multiclass
     clus
vv    AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE
  M0                        19                            104
  M1                         5                             17
  M1A                        1                              1
  MX                         1                             12
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 10(11Q13.3) CNV       17  2   2   1   0  2   0   2  0
  AMP PEAK 10(11Q13.3) WILD-TYPE 66 33   2   4   1 21   2   5  1
D10V7, multiclass
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 10(11Q13.3) CNV        18   0   2   1
  AMP PEAK 10(11Q13.3) WILD-TYPE 103   2  10   2
D10V8, multiclass
    clus
vv   AMP PEAK 10(11Q13.3) CNV AMP PEAK 10(11Q13.3) WILD-TYPE
  R0                       18                            103
  R1                        0                              2
  R2                        2                             10
  RX                        1                              2
D10V9, continuous
D10V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 10(11Q13.3) CNV             7        3         6         0         0
  AMP PEAK 10(11Q13.3) WILD-TYPE      23        5        32         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 10(11Q13.3) CNV               1          0          2          0
  AMP PEAK 10(11Q13.3) WILD-TYPE         4          9         21         13
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 10(11Q13.3) CNV              3         2
  AMP PEAK 10(11Q13.3) WILD-TYPE       14         7
D10V11, multiclass

Clustering(11) Variable = Amp Peak 11(12p13.33)
D11V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 11(12P13.33) CNV       30  4
  AMP PEAK 11(12P13.33) WILD-TYPE 89  7
      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                             34                              96 
      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                              4                               7 
$`AMP PEAK 11(12P13.33) CNV`
TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6672 
       19.10        12.72        17.62        14.50         8.45         7.33 
TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3896 
        1.02         7.96         1.02         1.02         0.92         1.02 
TCGA-AG-4001 TCGA-AG-4022 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A02G TCGA-AG-A02N 
        1.02         0.99        15.91        13.02        38.93        61.94 
TCGA-CI-6624 TCGA-CL-5917 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA 
        4.70        60.00         3.98         5.00         0.26       119.51 
TCGA-DY-A1DD TCGA-DY-A1H8 TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6885 
       57.24        32.58         0.16         0.46         0.66         5.23 
TCGA-EI-7002 TCGA-F5-6812 TCGA-G5-6233 TCGA-G5-6641 
        2.76         0.66        18.25        20.91 

$`AMP PEAK 11(12P13.33) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3913 
       19.53        15.85        11.77        10.62        13.55        10.39 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
        7.59         6.35        12.00         1.02         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 
        1.02         0.99         0.99         0.95         0.99         0.99 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
        1.02         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02X TCGA-AG-A032 
       10.98        51.98        49.94         1.94        40.96        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
        0.49         1.45         0.69         0.72         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-4957 
       10.19         6.02         6.02         6.94         9.37        13.97 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01         9.99         5.03         8.98 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
        7.36         6.97        27.91         6.97        19.99         5.92 
TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 
       41.33       121.08        24.13        51.48         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6514 
        7.63         2.17         8.22         3.98         6.90         7.10 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7004 
        6.15         3.55         3.98         2.73         7.79         2.04 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6813 
        3.39         0.85         2.17         0.39         1.02         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.76         0.46        47.70        47.08 

      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                           0.16                            0.39 
      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                         119.51                          121.08 
      AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE 
                           6.28                            6.25 
[1] "0.2 - 119.5 (6.3)" "0.4 - 121.1 (6.2)"
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6544                      TCGA-AH-6547 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6544                      TCGA-AH-6547 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6544                      TCGA-AH-6547 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
      "AMP PEAK 11(12P13.33) CNV"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"AMP PEAK 11(12P13.33) WILD-TYPE" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 11(12P13.33) CNV" "AMP PEAK 11(12P13.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"AMP PEAK 11(12P13.33) WILD-TYPE"       "AMP PEAK 11(12P13.33) CNV" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(12P13.33) CNV         17   24
  AMP PEAK 11(12P13.33) WILD-TYPE   57   64
        clus
vv       AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE
  FEMALE                        17                              57
  MALE                          24                              64
D11V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(12P13.33) CNV         33    5
  AMP PEAK 11(12P13.33) WILD-TYPE  110    8
                                clus
vv                               AMP PEAK 11(12P13.33) CNV
  RECTAL ADENOCARCINOMA                                 33
  RECTAL MUCINOUS ADENOCARCINOMA                         5
                                clus
vv                               AMP PEAK 11(12P13.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      110
  RECTAL MUCINOUS ADENOCARCINOMA                               8
D11V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 11(12P13.33) CNV          3   38
  AMP PEAK 11(12P13.33) WILD-TYPE    3  118
     clus
vv    AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE
  NO                          3                               3
  YES                        38                             118
                                 vv
clus                              M0 M1 M1A MX
  AMP PEAK 11(12P13.33) CNV       30  4   0  7
  AMP PEAK 11(12P13.33) WILD-TYPE 93 18   2  6
D11V6, multiclass
     clus
vv    AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE
  M0                         30                              93
  M1                          4                              18
  M1A                         0                               2
  MX                          7                               6
                                 vv
clus                              N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 11(12P13.33) CNV       24  7   0   2   0  6   0   2  0
  AMP PEAK 11(12P13.33) WILD-TYPE 59 28   4   3   1 17   2   5  1
D11V7, multiclass
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 11(12P13.33) CNV       28  0  3  2
  AMP PEAK 11(12P13.33) WILD-TYPE 93  2  9  1
D11V8, multiclass
    clus
vv   AMP PEAK 11(12P13.33) CNV AMP PEAK 11(12P13.33) WILD-TYPE
  R0                        28                              93
  R1                         0                               2
  R2                         3                               9
  RX                         2                               1
D11V9, continuous
D11V10, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  AMP PEAK 11(12P13.33) CNV             9        4        10         0
  AMP PEAK 11(12P13.33) WILD-TYPE      21        4        28         2
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 11(12P13.33) CNV               1         0          2          4
  AMP PEAK 11(12P13.33) WILD-TYPE         1         5          7         19
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 11(12P13.33) CNV                4        5         2
  AMP PEAK 11(12P13.33) WILD-TYPE          9       12         7
D11V11, multiclass

Clustering(12) Variable = Amp Peak 12(12p12.1)
D12V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 12(12P12.1) CNV       29  3
  AMP PEAK 12(12P12.1) WILD-TYPE 90  8
      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                            32                             98 
      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                             3                              8 
$`AMP PEAK 12(12P12.1) CNV`
TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6672 
       19.10        12.72        17.62        14.50         8.45         7.33 
TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3896 
        1.02         7.96         1.02         1.02         0.92         1.02 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A02G TCGA-AG-A02N 
        1.02         1.02        15.91        13.02        38.93        61.94 
TCGA-CI-6620 TCGA-CI-6624 TCGA-CL-5917 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
        6.02         4.70        60.00         3.98         5.00         0.26 
TCGA-DY-A1H8 TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6885 TCGA-EI-7002 
       32.58         0.16         0.46         0.66         5.23         2.76 
TCGA-G5-6233 TCGA-G5-6641 
       18.25        20.91 

$`AMP PEAK 12(12P12.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3913 
       19.53        15.85        11.77        10.62        13.55        10.39 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
        7.59         6.35        12.00         1.02         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 
        1.02         0.99         0.99         0.95         0.99         0.99 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
        1.02         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02X TCGA-AG-A032 
       10.98        51.98        49.94         1.94        40.96        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
        0.49         1.45         0.69         0.72         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5918 
       10.19         6.02         6.94         9.37        13.97         7.99 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 
       10.98        11.01         9.99         5.03         8.98         7.36 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DY-A0XA 
        6.97        27.91         6.97        19.99         5.92       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 
       41.33        57.24       121.08        24.13        51.48         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6513 
        2.40         7.63         2.17         8.22         3.98         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 
        7.10         6.15         3.55         3.98         2.73         7.79 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
        2.04         3.39         0.85         2.17         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.66         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6235 TCGA-G5-6572 
       47.70        47.08 

      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                          0.16                           0.39 
      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                         61.94                         121.08 
      AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE 
                         5.625                          6.625 
[1] "0.2 - 61.9 (5.6)"  "0.4 - 121.1 (6.6)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK 12(12P12.1) CNV"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 12(12P12.1) WILD-TYPE" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK 12(12P12.1) CNV" "AMP PEAK 12(12P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 12(12P12.1) WILD-TYPE"       "AMP PEAK 12(12P12.1) CNV" 
[1] "hr=" "1.3"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(12P12.1) CNV         17   23
  AMP PEAK 12(12P12.1) WILD-TYPE   57   65
        clus
vv       AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE
  FEMALE                       17                             57
  MALE                         23                             65
D12V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(12P12.1) CNV         32    5
  AMP PEAK 12(12P12.1) WILD-TYPE  111    8
                                clus
vv                               AMP PEAK 12(12P12.1) CNV
  RECTAL ADENOCARCINOMA                                32
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               AMP PEAK 12(12P12.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     111
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D12V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(12P12.1) CNV          3   37
  AMP PEAK 12(12P12.1) WILD-TYPE    3  119
     clus
vv    AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE
  NO                         3                              3
  YES                       37                            119
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 12(12P12.1) CNV       27  6   0  7
  AMP PEAK 12(12P12.1) WILD-TYPE 96 16   2  6
D12V6, multiclass
     clus
vv    AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE
  M0                        27                             96
  M1                         6                             16
  M1A                        0                              2
  MX                         7                              6
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 12(12P12.1) CNV       21  7   0   2   0  8   0   2  0
  AMP PEAK 12(12P12.1) WILD-TYPE 62 28   4   3   1 15   2   5  1
D12V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 12(12P12.1) CNV       27  0  4  2
  AMP PEAK 12(12P12.1) WILD-TYPE 94  2  8  1
D12V8, multiclass
    clus
vv   AMP PEAK 12(12P12.1) CNV AMP PEAK 12(12P12.1) WILD-TYPE
  R0                       27                             94
  R1                        0                              2
  R2                        4                              8
  RX                        2                              1
D12V9, continuous
D12V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 12(12P12.1) CNV             9        3         8         0         1
  AMP PEAK 12(12P12.1) WILD-TYPE      21        5        30         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 12(12P12.1) CNV               0          2          3          5
  AMP PEAK 12(12P12.1) WILD-TYPE         5          7         20          8
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 12(12P12.1) CNV              6         3
  AMP PEAK 12(12P12.1) WILD-TYPE       11         6
D12V11, multiclass

Clustering(13) Variable = Amp Peak 13(13q12.13)
D13V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 13(13Q12.13) CNV       90 11
  AMP PEAK 13(13Q12.13) WILD-TYPE 29  0
      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                            101                              29 
      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                             11                               0 
$`AMP PEAK 13(13Q12.13) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3911 
       15.85        11.77        10.62        13.55        19.10        17.62 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       10.39        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3605 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         1.02         0.92         0.99         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
        1.02        12.00        51.98        49.94         1.94        38.93 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-CI-6619 
       38.01         0.49         0.69         0.72         4.60         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01         9.99         5.03         8.98 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 
        6.97        27.91         6.97        19.99         3.98         5.00 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
      119.51        41.33        57.24       121.08        24.13        51.48 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 
       32.58         0.49         2.40         7.63         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
        0.46         3.98         0.66         6.90         7.10         6.15 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
        3.98         2.73         2.76         2.04         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 
        2.17         0.39         1.02         0.66         0.69         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.70        47.08        20.91 

$`AMP PEAK 13(13Q12.13) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-3400 TCGA-AG-3575 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3731 
       19.53        12.72        12.00         0.99         7.96         1.02 
TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A01J TCGA-AG-A01N 
        0.99         1.02        20.94        13.91         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 
       70.03        63.98        10.98        61.94        40.96         1.45 
TCGA-AH-6903 TCGA-BM-6198 TCGA-DC-6155 TCGA-DC-6681 TCGA-DT-5265 TCGA-EI-6507 
        1.81        10.19         7.36         5.92         0.26         0.16 
TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6814 TCGA-F5-6861 
        3.55         5.23         7.79         0.53         1.08 

      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                           0.39                            0.16 
      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                         121.08                           70.03 
      AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE 
                           6.15                            7.36 
[1] "0.4 - 121.1 (6.2)" "0.2 - 70.0 (7.4)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A025                      TCGA-AG-A026 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6155                      TCGA-DC-6156 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-G5-6572                      TCGA-G5-6641 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A025                      TCGA-AG-A026 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6155                      TCGA-DC-6156 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-G5-6572                      TCGA-G5-6641 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A025                      TCGA-AG-A026 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6155                      TCGA-DC-6156 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "AMP PEAK 13(13Q12.13) CNV" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 13(13Q12.13) WILD-TYPE"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"AMP PEAK 13(13Q12.13) WILD-TYPE" "AMP PEAK 13(13Q12.13) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
                     TCGA-G5-6572                      TCGA-G5-6641 
      "AMP PEAK 13(13Q12.13) CNV"       "AMP PEAK 13(13Q12.13) CNV" 
[1] "hr="     "3.2e+08"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(13Q12.13) CNV         54   67
  AMP PEAK 13(13Q12.13) WILD-TYPE   20   21
        clus
vv       AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE
  FEMALE                        54                              20
  MALE                          67                              21
D13V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(13Q12.13) CNV        112    5
  AMP PEAK 13(13Q12.13) WILD-TYPE   31    8
                                clus
vv                               AMP PEAK 13(13Q12.13) CNV
  RECTAL ADENOCARCINOMA                                112
  RECTAL MUCINOUS ADENOCARCINOMA                         5
                                clus
vv                               AMP PEAK 13(13Q12.13) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       31
  RECTAL MUCINOUS ADENOCARCINOMA                               8
D13V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 13(13Q12.13) CNV          3  118
  AMP PEAK 13(13Q12.13) WILD-TYPE    3   38
     clus
vv    AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE
  NO                          3                               3
  YES                       118                              38
                                 vv
clus                              M0 M1 M1A MX
  AMP PEAK 13(13Q12.13) CNV       89 18   1 12
  AMP PEAK 13(13Q12.13) WILD-TYPE 34  4   1  1
D13V6, multiclass
     clus
vv    AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE
  M0                         89                              34
  M1                         18                               4
  M1A                         1                               1
  MX                         12                               1
                                 vv
clus                              N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 13(13Q12.13) CNV       54 30   4   2   1 20   1   7  1
  AMP PEAK 13(13Q12.13) WILD-TYPE 29  5   0   3   0  3   1   0  0
D13V7, multiclass
                                 vv
clus                              R0 R1 R2 RX
  AMP PEAK 13(13Q12.13) CNV       86  2  9  2
  AMP PEAK 13(13Q12.13) WILD-TYPE 35  0  3  1
D13V8, multiclass
    clus
vv   AMP PEAK 13(13Q12.13) CNV AMP PEAK 13(13Q12.13) WILD-TYPE
  R0                        86                              35
  R1                         2                               0
  R2                         9                               3
  RX                         2                               1
D13V9, continuous
D13V10, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  AMP PEAK 13(13Q12.13) CNV            21        2        27         2
  AMP PEAK 13(13Q12.13) WILD-TYPE       9        6        11         0
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 13(13Q12.13) CNV               2         4          6         20
  AMP PEAK 13(13Q12.13) WILD-TYPE         0         1          3          3
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 13(13Q12.13) CNV               11       13         8
  AMP PEAK 13(13Q12.13) WILD-TYPE          2        4         1
D13V11, multiclass

Clustering(14) Variable = Amp Peak 14(13q12.2)
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(13Q12.2) CNV       89 11
  AMP PEAK 14(13Q12.2) WILD-TYPE 30  0
      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                           100                             30 
      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                            11                              0 
$`AMP PEAK 14(13Q12.2) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3911 
       15.85        11.77        10.62        13.55        19.10        17.62 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 
       10.39        14.50         7.59         6.35         7.33         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3605 TCGA-AG-3727 
        1.02         2.01         1.02         1.02         0.99         0.95 
TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02         0.99         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       12.00        51.98        49.94         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-CI-6619 
       38.01         0.49         0.69         0.72         4.60         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.94         9.37         4.70        13.97        60.00         7.99 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 
       10.98        11.01         9.99         5.03         8.98         6.97 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA 
       27.91         6.97        19.99         3.98         5.00       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 
       41.33        57.24       121.08        24.13        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
        0.49         2.40         7.63         2.17         8.22         0.46 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 
        3.98         0.66         6.90         7.10         6.15         3.98 
TCGA-EI-6884 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
        2.73         2.76         2.04         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 TCGA-F5-6864 
        0.39         1.02         0.66         0.69         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        47.70        47.08        20.91 

$`AMP PEAK 14(13Q12.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-3400 TCGA-AF-5654 TCGA-AG-3575 TCGA-AG-3599 TCGA-AG-3726 
       19.53        12.72         8.45        12.00         0.99         7.96 
TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A01J 
        1.02         0.99         1.02        20.94        13.91         1.02 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A02N TCGA-AH-6547 
       12.00        70.03        63.98        10.98        61.94         1.45 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6620 TCGA-DC-6155 TCGA-DC-6681 TCGA-DT-5265 
        1.81        10.19         6.02         7.36         5.92         0.26 
TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6814 TCGA-F5-6861 
        0.16         3.55         5.23         7.79         0.53         1.08 

      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                          0.39                           0.16 
      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                        121.08                          70.03 
      AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE 
                          6.25                           6.69 
[1] "0.4 - 121.1 (6.2)" "0.2 - 70.0 (6.7)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK 14(13Q12.2) CNV" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 14(13Q12.2) WILD-TYPE"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 14(13Q12.2) WILD-TYPE" "AMP PEAK 14(13Q12.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK 14(13Q12.2) CNV"       "AMP PEAK 14(13Q12.2) CNV" 
[1] "hr="     "3.1e+08"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q12.2) CNV         52   68
  AMP PEAK 14(13Q12.2) WILD-TYPE   22   20
        clus
vv       AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE
  FEMALE                       52                             22
  MALE                         68                             20
D14V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q12.2) CNV        111    5
  AMP PEAK 14(13Q12.2) WILD-TYPE   32    8
                                clus
vv                               AMP PEAK 14(13Q12.2) CNV
  RECTAL ADENOCARCINOMA                               111
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               AMP PEAK 14(13Q12.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      32
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D14V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q12.2) CNV          3  117
  AMP PEAK 14(13Q12.2) WILD-TYPE    3   39
     clus
vv    AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE
  NO                         3                              3
  YES                      117                             39
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 14(13Q12.2) CNV       89 17   1 12
  AMP PEAK 14(13Q12.2) WILD-TYPE 34  5   1  1
D14V6, multiclass
     clus
vv    AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE
  M0                        89                             34
  M1                        17                              5
  M1A                        1                              1
  MX                        12                              1
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 14(13Q12.2) CNV       54 29   4   2   1 20   1   7  1
  AMP PEAK 14(13Q12.2) WILD-TYPE 29  6   0   3   0  3   1   0  0
D14V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 14(13Q12.2) CNV       86  2  9  2
  AMP PEAK 14(13Q12.2) WILD-TYPE 35  0  3  1
D14V8, multiclass
    clus
vv   AMP PEAK 14(13Q12.2) CNV AMP PEAK 14(13Q12.2) WILD-TYPE
  R0                       86                             35
  R1                        2                              0
  R2                        9                              3
  RX                        2                              1
D14V9, continuous
D14V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 14(13Q12.2) CNV            21        2        27         2         2
  AMP PEAK 14(13Q12.2) WILD-TYPE       9        6        11         0         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 14(13Q12.2) CNV               4          6         20         11
  AMP PEAK 14(13Q12.2) WILD-TYPE         1          3          3          2
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 14(13Q12.2) CNV             13         7
  AMP PEAK 14(13Q12.2) WILD-TYPE        4         2
D14V11, multiclass

Clustering(15) Variable = Amp Peak 15(13q22.1)
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(13Q22.1) CNV       87 11
  AMP PEAK 15(13Q22.1) WILD-TYPE 32  0
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                            98                             32 
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                            11                              0 
$`AMP PEAK 15(13Q22.1) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       17.62        10.39        14.50         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3605 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         1.02         0.92         0.99         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        25.94        23.01        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       38.93        38.01         0.49         0.69         0.72         4.60 
TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01         9.99         5.03         8.98 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 
        6.97        27.91         6.97        19.99         3.98         5.00 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF 
        0.26       119.51        41.33        57.24       121.08        24.13 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6509 TCGA-EI-6510 
       51.48        32.58         0.49         7.63         8.22         0.46 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 
        3.98         0.66         6.90         7.10         6.15         3.98 
TCGA-EI-6884 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
        2.73         2.76         3.39         0.85         2.17         0.39 
TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 
        1.02         0.66         0.69         0.76        18.25        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

$`AMP PEAK 15(13Q22.1) WILD-TYPE`
TCGA-AF-3400 TCGA-AF-5654 TCGA-AG-3575 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3731 
       12.72         8.45        12.00         0.99         7.96         1.02 
TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A011 TCGA-AG-A01J 
        0.99         1.02        20.94        13.91        17.03         1.02 
TCGA-AG-A01N TCGA-AG-A020 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6903 
       12.00        10.98        61.94        40.96         1.45         1.81 
TCGA-BM-6198 TCGA-CI-6620 TCGA-DC-6155 TCGA-DC-6681 TCGA-EF-5831 TCGA-EI-6507 
       10.19         6.02         7.36         5.92         2.40         0.16 
TCGA-EI-6508 TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6814 
        2.17         3.55         5.23         7.79         2.04         0.53 
TCGA-F5-6861 TCGA-F5-6864 
        1.08         0.46 

      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                          0.26                           0.16 
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                        121.08                          61.94 
      AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE 
                         6.920                          5.575 
[1] "0.3 - 121.1 (6.9)" "0.2 - 61.9 (5.6)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 15(13Q22.1) WILD-TYPE"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 15(13Q22.1) WILD-TYPE" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 15(13Q22.1) CNV" "AMP PEAK 15(13Q22.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "AMP PEAK 15(13Q22.1) CNV"       "AMP PEAK 15(13Q22.1) CNV" 
[1] "hr="     "2.3e+08"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) CNV         51   66
  AMP PEAK 15(13Q22.1) WILD-TYPE   23   22
        clus
vv       AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  FEMALE                       51                             23
  MALE                         66                             22
D15V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) CNV        109    4
  AMP PEAK 15(13Q22.1) WILD-TYPE   34    9
                                clus
vv                               AMP PEAK 15(13Q22.1) CNV
  RECTAL ADENOCARCINOMA                               109
  RECTAL MUCINOUS ADENOCARCINOMA                        4
                                clus
vv                               AMP PEAK 15(13Q22.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      34
  RECTAL MUCINOUS ADENOCARCINOMA                              9
D15V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(13Q22.1) CNV          4  113
  AMP PEAK 15(13Q22.1) WILD-TYPE    2   43
     clus
vv    AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  NO                         4                              2
  YES                      113                             43
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 15(13Q22.1) CNV       87 16   1 12
  AMP PEAK 15(13Q22.1) WILD-TYPE 36  6   1  1
D15V6, multiclass
     clus
vv    AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  M0                        87                             36
  M1                        16                              6
  M1A                        1                              1
  MX                        12                              1
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 15(13Q22.1) CNV       54 29   3   2   1 19   1   6  1
  AMP PEAK 15(13Q22.1) WILD-TYPE 29  6   1   3   0  4   1   1  0
D15V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 15(13Q22.1) CNV       83  2  8  3
  AMP PEAK 15(13Q22.1) WILD-TYPE 38  0  4  0
D15V8, multiclass
    clus
vv   AMP PEAK 15(13Q22.1) CNV AMP PEAK 15(13Q22.1) WILD-TYPE
  R0                       83                             38
  R1                        2                              0
  R2                        8                              4
  RX                        3                              0
D15V9, continuous
D15V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 15(13Q22.1) CNV            20        5        25         2         2
  AMP PEAK 15(13Q22.1) WILD-TYPE      10        3        13         0         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 15(13Q22.1) CNV               4          6         19         11
  AMP PEAK 15(13Q22.1) WILD-TYPE         1          3          4          2
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 15(13Q22.1) CNV             12         6
  AMP PEAK 15(13Q22.1) WILD-TYPE        5         3
D15V11, multiclass

Clustering(16) Variable = Amp Peak 16(15q26.1)
D16V1, survival
                                sevent
clus2                              0   1
  AMP PEAK 16(15Q26.1) CNV        11   1
  AMP PEAK 16(15Q26.1) WILD-TYPE 108  10
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                            12                            118 
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                             1                             10 
$`AMP PEAK 16(15Q26.1) CNV`
TCGA-AF-3400 TCGA-AG-3587 TCGA-AG-4001 TCGA-AG-A01W TCGA-AH-6643 TCGA-BM-6198 
       12.72         1.02         1.02        70.03         0.69        10.19 
TCGA-CI-6623 TCGA-CL-5918 TCGA-DY-A1DC TCGA-EI-7004 TCGA-F5-6863 TCGA-F5-6864 
        9.37         7.99        41.33         2.04         0.76         0.46 

$`AMP PEAK 16(15Q26.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       17.62        10.39        14.50         8.45         7.59         6.35 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
        7.33        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        0.99         0.99         7.96         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        1.02         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01Y 
       13.02         1.02         1.02        12.00        12.00        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       10.98        51.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 
       40.96        38.01         0.49         1.45         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 
        1.81         6.02         6.02         6.94         4.70        13.97 
TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
       60.00        10.98        11.01         9.99         5.03         8.98 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
        7.36         6.97        27.91         6.97        19.99         5.92 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DD TCGA-DY-A1DE 
        3.98         5.00         0.26       119.51        57.24       121.08 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
       24.13        51.48        32.58         0.49         2.40         7.63 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
        0.16         2.17         8.22         0.46         3.98         0.66 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
        6.90         7.10         6.15         3.55         3.98         2.73 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
        5.23         7.79         2.76         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.39         1.02         0.66         0.69         0.53         1.08 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        47.70        47.08        20.91 

      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                          0.46                           0.16 
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                         70.03                         121.08 
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                         5.015                          6.250 
[1] "0.5 - 70.0 (5.0)"  "0.2 - 121.1 (6.2)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 16(15Q26.1) CNV"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 16(15Q26.1) CNV"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 16(15Q26.1) WILD-TYPE"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "AMP PEAK 16(15Q26.1) CNV" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 16(15Q26.1) CNV"       "AMP PEAK 16(15Q26.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) CNV         10    5
  AMP PEAK 16(15Q26.1) WILD-TYPE   64   83
        clus
vv       AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  FEMALE                       10                             64
  MALE                          5                             83
D16V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) CNV         13    2
  AMP PEAK 16(15Q26.1) WILD-TYPE  130   11
                                clus
vv                               AMP PEAK 16(15Q26.1) CNV
  RECTAL ADENOCARCINOMA                                13
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               AMP PEAK 16(15Q26.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     130
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D16V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) CNV          2   13
  AMP PEAK 16(15Q26.1) WILD-TYPE    4  143
     clus
vv    AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  NO                         2                              4
  YES                       13                            143
                                vv
clus                              M0  M1 M1A  MX
  AMP PEAK 16(15Q26.1) CNV        13   0   0   1
  AMP PEAK 16(15Q26.1) WILD-TYPE 110  22   2  12
D16V6, multiclass
     clus
vv    AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  M0                        13                            110
  M1                         0                             22
  M1A                        0                              2
  MX                         1                             12
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 16(15Q26.1) CNV        7  3   0   0   0  2   1   2  0
  AMP PEAK 16(15Q26.1) WILD-TYPE 76 32   4   5   1 21   1   5  1
D16V7, multiclass
                                vv
clus                              R0  R1  R2  RX
  AMP PEAK 16(15Q26.1) CNV        12   0   0   1
  AMP PEAK 16(15Q26.1) WILD-TYPE 109   2  12   2
D16V8, multiclass
    clus
vv   AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  R0                       12                            109
  R1                        0                              2
  R2                        0                             12
  RX                        1                              2
D16V9, continuous
D16V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 16(15Q26.1) CNV             2        1         4         0         0
  AMP PEAK 16(15Q26.1) WILD-TYPE      28        7        34         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 16(15Q26.1) CNV               0          0          3          4
  AMP PEAK 16(15Q26.1) WILD-TYPE         5          9         20          9
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 16(15Q26.1) CNV              0         1
  AMP PEAK 16(15Q26.1) WILD-TYPE       17         8
D16V11, multiclass

Clustering(17) Variable = Amp Peak 17(16p11.2)
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(16P11.2) CNV       33  4
  AMP PEAK 17(16P11.2) WILD-TYPE 86  7
      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                            37                             93 
      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                             4                              7 
$`AMP PEAK 17(16P11.2) CNV`
TCGA-AF-2689 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3582 
       15.85        17.62        10.39         7.59         6.35         1.02 
TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 
        7.96         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A02G 
       15.91        13.02         1.02        12.00        12.00        38.93 
TCGA-AG-A032 TCGA-AH-6644 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5917 TCGA-DC-4749 
       38.01         0.72         6.94         9.37        60.00        11.01 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6683 TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 
        5.03         8.98         5.00        24.13        51.48         0.49 
TCGA-EI-6512 TCGA-EI-6514 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
        0.66         7.10         3.39         2.17         0.39         1.02 
TCGA-F5-6863 
        0.76 

$`AMP PEAK 17(16P11.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 
       14.50         8.45         7.33        12.00         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3742 
        1.02         1.02         0.99         0.99         0.95         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A01J TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       23.01        17.03         1.02        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6544 
       51.98        49.94         1.94        61.94        40.96         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 
        1.45         0.69         4.60         1.81        10.19         6.02 
TCGA-CI-6620 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 
        6.02         4.70        13.97         7.99        10.98         9.99 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
        7.36         6.97        27.91         6.97        19.99         5.92 
TCGA-DC-6682 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
        3.98         0.26       119.51        41.33        57.24       121.08 
TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
       32.58         2.40         7.63         0.16         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        0.46         3.98         6.90         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 
        2.73         5.23         7.79         2.76         2.04         0.85 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6233 
        0.66         0.69         0.53         1.08         0.46        18.25 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       47.70        47.08        20.91 

      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                          0.39                           0.16 
      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                         60.00                         121.08 
      AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE 
                          6.94                           6.02 
[1] "0.4 - 60.0 (6.9)"  "0.2 - 121.1 (6.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 17(16P11.2) WILD-TYPE"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "AMP PEAK 17(16P11.2) CNV"       "AMP PEAK 17(16P11.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 17(16P11.2) CNV" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 17(16P11.2) WILD-TYPE" "AMP PEAK 17(16P11.2) WILD-TYPE" 
[1] "hr=" "2.3"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(16P11.2) CNV         20   25
  AMP PEAK 17(16P11.2) WILD-TYPE   54   63
        clus
vv       AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE
  FEMALE                       20                             54
  MALE                         25                             63
D17V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(16P11.2) CNV         45    0
  AMP PEAK 17(16P11.2) WILD-TYPE   98   13
                                clus
vv                               AMP PEAK 17(16P11.2) CNV
  RECTAL ADENOCARCINOMA                                45
  RECTAL MUCINOUS ADENOCARCINOMA                        0
                                clus
vv                               AMP PEAK 17(16P11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      98
  RECTAL MUCINOUS ADENOCARCINOMA                             13
D17V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(16P11.2) CNV          2   43
  AMP PEAK 17(16P11.2) WILD-TYPE    4  113
     clus
vv    AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE
  NO                         2                              4
  YES                       43                            113
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 17(16P11.2) CNV       30 11   0  4
  AMP PEAK 17(16P11.2) WILD-TYPE 93 11   2  9
D17V6, multiclass
     clus
vv    AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE
  M0                        30                             93
  M1                        11                             11
  M1A                        0                              2
  MX                         4                              9
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 17(16P11.2) CNV       18 13   2   2   0  8   0   1  1
  AMP PEAK 17(16P11.2) WILD-TYPE 65 22   2   3   1 15   2   6  0
D17V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 17(16P11.2) CNV       29  0  7  1
  AMP PEAK 17(16P11.2) WILD-TYPE 92  2  5  2
D17V8, multiclass
    clus
vv   AMP PEAK 17(16P11.2) CNV AMP PEAK 17(16P11.2) WILD-TYPE
  R0                       29                             92
  R1                        0                              2
  R2                        7                              5
  RX                        1                              2
D17V9, continuous
D17V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 17(16P11.2) CNV             7        1         7         2         0
  AMP PEAK 17(16P11.2) WILD-TYPE      23        7        31         0         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 17(16P11.2) CNV               1          1         10          4
  AMP PEAK 17(16P11.2) WILD-TYPE         4          8         13          9
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 17(16P11.2) CNV              7         3
  AMP PEAK 17(16P11.2) WILD-TYPE       10         6
D17V11, multiclass

Clustering(18) Variable = Amp Peak 18(17q12)
D18V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 18(17Q12) CNV       31  2
  AMP PEAK 18(17Q12) WILD-TYPE 88  9
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                          33                           97 
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                           2                            9 
$`AMP PEAK 18(17Q12) CNV`
TCGA-AF-2690 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3742 
       11.77        12.00         1.02         1.02         1.02         0.99 
TCGA-AG-3883 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A014 TCGA-AG-A016 
        1.02         1.02         1.02         1.02        15.91         1.02 
TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A023 TCGA-AH-6643 TCGA-AH-6897 TCGA-CI-6619 
       12.00        63.98        51.98         0.69         4.60         6.02 
TCGA-CI-6623 TCGA-DC-6154 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DG 
        9.37         8.98         3.98         5.00         0.26        51.48 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6514 TCGA-EI-7002 TCGA-F5-6811 TCGA-F5-6813 
        8.22         0.46         7.10         2.76         1.02         0.69 
TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6641 
        0.46        47.70        20.91 

$`AMP PEAK 18(17Q12) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        15.85        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       17.62        10.39        14.50         8.45         7.59         6.35 
TCGA-AF-6672 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 
        7.33         2.01         1.02         0.99         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.95         1.02         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 
        0.99         1.02         1.02         0.99        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A01J 
        6.02        25.94        23.01        17.03        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        70.03        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6644 
       61.94        40.96        38.01         0.49         1.45         0.72 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 
        1.81        10.19         6.02         6.94         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01         9.99         5.03 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
        7.36         6.97        27.91         6.97        19.99         5.92 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1H8 
      119.51        41.33        57.24       121.08        24.13        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6511 
        0.49         2.40         7.63         0.16         2.17         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
        0.66         6.90         6.15         3.55         3.98         2.73 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
        5.23         7.79         2.04         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 
        0.39         0.66         0.53         1.08         0.76        18.25 
TCGA-G5-6572 
       47.08 

      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                        0.26                         0.16 
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                       63.98                       121.08 
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                        3.98                         6.97 
[1] "0.3 - 64.0 (4.0)"  "0.2 - 121.1 (7.0)"
                  TCGA-AF-2687                   TCGA-AF-2689 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3575                   TCGA-AG-3581 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3582                   TCGA-AG-3583 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3586                   TCGA-AG-3587 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3599                   TCGA-AG-3605 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3726                   TCGA-AG-3727 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3731                   TCGA-AG-3742 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3878                   TCGA-AG-3883 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3896                   TCGA-AG-3999 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-4001                   TCGA-AG-4007 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-4008                   TCGA-AG-4022 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A002                   TCGA-AG-A008 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00C                   TCGA-AG-A00H 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00Y                   TCGA-AG-A011 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A014                   TCGA-AG-A015 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A016                   TCGA-AG-A01J 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01L                   TCGA-AG-A01N 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A01W                   TCGA-AG-A01Y 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A020                   TCGA-AG-A023 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A025                   TCGA-AG-A026 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02G                   TCGA-AG-A02N 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02X                   TCGA-AG-A032 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6544                   TCGA-AH-6547 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6643                   TCGA-AH-6644 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6897                   TCGA-AH-6903 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-BM-6198                   TCGA-CI-6619 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-CI-6620                   TCGA-CI-6622 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6623                   TCGA-CI-6624 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-4957                   TCGA-CL-5917 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-5918                   TCGA-DC-4745 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-4749                   TCGA-DC-5337 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-5869                   TCGA-DC-6154 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DC-6155                   TCGA-DC-6156 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6157                   TCGA-DC-6158 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6160                   TCGA-DC-6681 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6682                   TCGA-DC-6683 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DT-5265                   TCGA-DY-A0XA 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DC                   TCGA-DY-A1DD 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DE                   TCGA-DY-A1DF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DG                   TCGA-DY-A1H8 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EF-5830                   TCGA-EF-5831 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6506                   TCGA-EI-6507 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6508                   TCGA-EI-6509 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-EI-6510                   TCGA-EI-6511 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6512                   TCGA-EI-6513 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6514                   TCGA-EI-6881 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6882                   TCGA-EI-6883 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6884                   TCGA-EI-6885 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6917                   TCGA-EI-7002 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-EI-7004                   TCGA-F5-6465 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6571                   TCGA-F5-6702 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6810                   TCGA-F5-6811 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-F5-6812                   TCGA-F5-6813 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-F5-6814                   TCGA-F5-6861 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6863                   TCGA-F5-6864 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-G5-6233                   TCGA-G5-6235 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-G5-6572                   TCGA-G5-6641 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3575                   TCGA-AG-3581 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3582                   TCGA-AG-3583 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3586                   TCGA-AG-3587 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3599                   TCGA-AG-3605 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3726                   TCGA-AG-3727 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3731                   TCGA-AG-3742 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3878                   TCGA-AG-3883 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3896                   TCGA-AG-3999 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-4001                   TCGA-AG-4007 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-4008                   TCGA-AG-4022 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A002                   TCGA-AG-A008 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00C                   TCGA-AG-A00H 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00Y                   TCGA-AG-A011 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A014                   TCGA-AG-A015 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A016                   TCGA-AG-A01J 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01L                   TCGA-AG-A01N 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A01W                   TCGA-AG-A01Y 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A020                   TCGA-AG-A023 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A025                   TCGA-AG-A026 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02G                   TCGA-AG-A02N 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02X                   TCGA-AG-A032 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6544                   TCGA-AH-6547 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6643                   TCGA-AH-6644 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6897                   TCGA-AH-6903 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-BM-6198                   TCGA-CI-6619 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-CI-6620                   TCGA-CI-6622 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6623                   TCGA-CI-6624 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-4957                   TCGA-CL-5917 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-5918                   TCGA-DC-4745 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-4749                   TCGA-DC-5337 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-5869                   TCGA-DC-6154 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DC-6155                   TCGA-DC-6156 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6157                   TCGA-DC-6158 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6160                   TCGA-DC-6681 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6682                   TCGA-DC-6683 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DT-5265                   TCGA-DY-A0XA 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DC                   TCGA-DY-A1DD 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DE                   TCGA-DY-A1DF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DG                   TCGA-DY-A1H8 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EF-5830                   TCGA-EF-5831 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6506                   TCGA-EI-6507 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6508                   TCGA-EI-6509 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-EI-6510                   TCGA-EI-6511 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6512                   TCGA-EI-6513 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6514                   TCGA-EI-6881 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6882                   TCGA-EI-6883 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6884                   TCGA-EI-6885 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6917                   TCGA-EI-7002 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-EI-7004                   TCGA-F5-6465 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6571                   TCGA-F5-6702 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6810                   TCGA-F5-6811 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-F5-6812                   TCGA-F5-6813 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-F5-6814                   TCGA-F5-6861 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6863                   TCGA-F5-6864 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-G5-6233                   TCGA-G5-6235 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-G5-6572                   TCGA-G5-6641 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2690                   TCGA-AF-2691 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-2692                   TCGA-AF-2693 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3400                   TCGA-AF-3911 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AF-6655                   TCGA-AF-6672 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3575                   TCGA-AG-3581 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3582                   TCGA-AG-3583 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3586                   TCGA-AG-3587 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3599                   TCGA-AG-3605 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3726                   TCGA-AG-3727 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3731                   TCGA-AG-3742 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3878                   TCGA-AG-3883 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-3896                   TCGA-AG-3999 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-4001                   TCGA-AG-4007 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-4008                   TCGA-AG-4022 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A002                   TCGA-AG-A008 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00C                   TCGA-AG-A00H 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A00Y                   TCGA-AG-A011 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A014                   TCGA-AG-A015 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A016                   TCGA-AG-A01J 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A01L                   TCGA-AG-A01N 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A01W                   TCGA-AG-A01Y 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A020                   TCGA-AG-A023 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-AG-A025                   TCGA-AG-A026 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02G                   TCGA-AG-A02N 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AG-A02X                   TCGA-AG-A032 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6544                   TCGA-AH-6547 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6643                   TCGA-AH-6644 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-AH-6897                   TCGA-AH-6903 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-BM-6198                   TCGA-CI-6619 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-CI-6620                   TCGA-CI-6622 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CI-6623                   TCGA-CI-6624 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-4957                   TCGA-CL-5917 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-CL-5918                   TCGA-DC-4745 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-4749                   TCGA-DC-5337 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-5869                   TCGA-DC-6154 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DC-6155                   TCGA-DC-6156 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6157                   TCGA-DC-6158 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6160                   TCGA-DC-6681 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DC-6682                   TCGA-DC-6683 
      "AMP PEAK 18(17Q12) CNV"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-DT-5265                   TCGA-DY-A0XA 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DC                   TCGA-DY-A1DD 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DE                   TCGA-DY-A1DF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DY-A1DG                   TCGA-DY-A1H8 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EF-5830                   TCGA-EF-5831 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6506                   TCGA-EI-6507 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6508                   TCGA-EI-6509 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-EI-6510                   TCGA-EI-6511 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6512                   TCGA-EI-6513 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6514                   TCGA-EI-6881 
      "AMP PEAK 18(17Q12) CNV" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6882                   TCGA-EI-6883 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6884                   TCGA-EI-6885 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EI-6917                   TCGA-EI-7002 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-EI-7004                   TCGA-F5-6465 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6571                   TCGA-F5-6702 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6810                   TCGA-F5-6811 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-F5-6812                   TCGA-F5-6813 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-F5-6814                   TCGA-F5-6861 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-F5-6863                   TCGA-F5-6864 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-G5-6233                   TCGA-G5-6235 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
                  TCGA-G5-6572                   TCGA-G5-6641 
"AMP PEAK 18(17Q12) WILD-TYPE"       "AMP PEAK 18(17Q12) CNV" 
[1] "hr=" "1.4"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) CNV         16   27
  AMP PEAK 18(17Q12) WILD-TYPE   58   61
        clus
vv       AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  FEMALE                     16                           58
  MALE                       27                           61
D18V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) CNV         41    2
  AMP PEAK 18(17Q12) WILD-TYPE  102   11
                                clus
vv                               AMP PEAK 18(17Q12) CNV
  RECTAL ADENOCARCINOMA                              41
  RECTAL MUCINOUS ADENOCARCINOMA                      2
                                clus
vv                               AMP PEAK 18(17Q12) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   102
  RECTAL MUCINOUS ADENOCARCINOMA                           11
D18V5, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) CNV          0   43
  AMP PEAK 18(17Q12) WILD-TYPE    6  113
     clus
vv    AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  NO                       0                            6
  YES                     43                          113
                              vv
clus                           M0 M1 M1A MX
  AMP PEAK 18(17Q12) CNV       30  9   0  4
  AMP PEAK 18(17Q12) WILD-TYPE 93 13   2  9
D18V6, multiclass
     clus
vv    AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  M0                      30                           93
  M1                       9                           13
  M1A                      0                            2
  MX                       4                            9
                              vv
clus                           N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 18(17Q12) CNV       23  7   0   1   1  8   0   3  0
  AMP PEAK 18(17Q12) WILD-TYPE 60 28   4   4   0 15   2   4  1
D18V7, multiclass
                              vv
clus                           R0 R1 R2 RX
  AMP PEAK 18(17Q12) CNV       30  1  6  1
  AMP PEAK 18(17Q12) WILD-TYPE 91  1  6  2
D18V8, multiclass
    clus
vv   AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  R0                     30                           91
  R1                      1                            1
  R2                      6                            6
  RX                      1                            2
D18V9, continuous
D18V10, continuous
                              vv
clus                           STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 18(17Q12) CNV             8        3        10         0         0
  AMP PEAK 18(17Q12) WILD-TYPE      22        5        28         2         2
                              vv
clus                           STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 18(17Q12) CNV               1          1          4          5
  AMP PEAK 18(17Q12) WILD-TYPE         4          8         19          8
                              vv
clus                           STAGE IV STAGE IVA
  AMP PEAK 18(17Q12) CNV              7         3
  AMP PEAK 18(17Q12) WILD-TYPE       10         6
D18V11, multiclass

Clustering(19) Variable = Amp Peak 19(17q24.1)
D19V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 19(17Q24.1) CNV       27  2
  AMP PEAK 19(17Q24.1) WILD-TYPE 92  9
      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                            29                            101 
      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                             2                              9 
$`AMP PEAK 19(17Q24.1) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3587 
       15.85        11.77        13.55        12.00         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01N 
        1.02         1.02         1.02        15.91         1.02        12.00 
TCGA-AG-A023 TCGA-AH-6643 TCGA-AH-6897 TCGA-CI-6619 TCGA-DC-6154 TCGA-DC-6682 
       51.98         0.69         4.60         6.02         8.98         3.98 
TCGA-DC-6683 TCGA-DY-A1DE TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6510 
        5.00       121.08        51.48         0.49         2.40         0.46 
TCGA-EI-6514 TCGA-EI-7002 TCGA-F5-6811 TCGA-F5-6864 TCGA-G5-6235 
        7.10         2.76         1.02         0.46        47.70 

$`AMP PEAK 19(17Q24.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       19.53        10.62        19.10        12.72        17.62        10.39 
TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3582 
       14.50         8.45         7.59         6.35         7.33         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        2.01         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.99         0.99         1.02         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4022 TCGA-AG-A002 
        0.99         0.99         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 
       13.91         6.02        25.94        23.01        17.03        13.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
        1.94        38.93        61.94        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6620 TCGA-CI-6622 
        1.45         0.72         1.81        10.19         6.02         6.94 
TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        9.37         4.70        13.97        60.00         7.99        10.98 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
       11.01         9.99         5.03         7.36         6.97        27.91 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
        6.97        19.99         5.92         0.26       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 
       57.24        24.13        32.58         7.63         0.16         2.17 
TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-6882 
        8.22         3.98         0.66         6.90         6.15         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 
        3.98         2.73         5.23         7.79         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        0.85         2.17         0.39         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6572 TCGA-G5-6641 
        1.08         0.76        18.25        47.08        20.91 

      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                          0.46                           0.16 
      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                        121.08                         119.51 
      AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE 
                          4.60                           6.94 
[1] "0.5 - 121.1 (4.6)" "0.2 - 119.5 (6.9)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 19(17Q24.1) CNV"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 19(17Q24.1) CNV" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 19(17Q24.1) WILD-TYPE"       "AMP PEAK 19(17Q24.1) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 19(17Q24.1) WILD-TYPE" "AMP PEAK 19(17Q24.1) WILD-TYPE" 
[1] "hr=" "1.4"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q24.1) CNV         17   20
  AMP PEAK 19(17Q24.1) WILD-TYPE   57   68
        clus
vv       AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE
  FEMALE                       17                             57
  MALE                         20                             68
D19V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q24.1) CNV         36    0
  AMP PEAK 19(17Q24.1) WILD-TYPE  107   13
                                clus
vv                               AMP PEAK 19(17Q24.1) CNV
  RECTAL ADENOCARCINOMA                                36
  RECTAL MUCINOUS ADENOCARCINOMA                        0
                                clus
vv                               AMP PEAK 19(17Q24.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     107
  RECTAL MUCINOUS ADENOCARCINOMA                             13
D19V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q24.1) CNV          0   37
  AMP PEAK 19(17Q24.1) WILD-TYPE    6  119
     clus
vv    AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE
  NO                         0                              6
  YES                       37                            119
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 19(17Q24.1) CNV       25  9   0  3
  AMP PEAK 19(17Q24.1) WILD-TYPE 98 13   2 10
D19V6, multiclass
     clus
vv    AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE
  M0                        25                             98
  M1                         9                             13
  M1A                        0                              2
  MX                         3                             10
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 19(17Q24.1) CNV       20  5   0   1   1  8   0   2  0
  AMP PEAK 19(17Q24.1) WILD-TYPE 63 30   4   4   0 15   2   5  1
D19V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 19(17Q24.1) CNV       26  1  5  0
  AMP PEAK 19(17Q24.1) WILD-TYPE 95  1  7  3
D19V8, multiclass
    clus
vv   AMP PEAK 19(17Q24.1) CNV AMP PEAK 19(17Q24.1) WILD-TYPE
  R0                       26                             95
  R1                        1                              1
  R2                        5                              7
  RX                        0                              3
D19V9, continuous
D19V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 19(17Q24.1) CNV             5        1        11         1         0
  AMP PEAK 19(17Q24.1) WILD-TYPE      25        7        27         1         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 19(17Q24.1) CNV               1          0          4          3
  AMP PEAK 19(17Q24.1) WILD-TYPE         4          9         19         10
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 19(17Q24.1) CNV              7         3
  AMP PEAK 19(17Q24.1) WILD-TYPE       10         6
D19V11, multiclass

Clustering(20) Variable = Amp Peak 20(19p13.2)
D20V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 20(19P13.2) CNV       22  4
  AMP PEAK 20(19P13.2) WILD-TYPE 97  7
      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                            26                            104 
      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                             4                              7 
$`AMP PEAK 20(19P13.2) CNV`
TCGA-AF-2690 TCGA-AF-3913 TCGA-AG-3582 TCGA-AG-3878 TCGA-AG-3896 TCGA-AG-3999 
       11.77        10.39         1.02         0.99         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A026 
        1.02         1.02         0.99        12.00        12.00         1.94 
TCGA-AG-A032 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-6154 TCGA-DC-6157 TCGA-DY-A1DD 
       38.01        10.98        11.01         8.98        27.91        57.24 
TCGA-DY-A1DF TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6883 
       24.13         0.49         7.63         0.66         7.10         3.98 
TCGA-EI-7002 TCGA-F5-6863 
        2.76         0.76 

$`AMP PEAK 20(19P13.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        15.85        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       17.62        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
       12.00         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3883 
        0.99         7.96         0.95         1.02         0.99         1.02 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4008 TCGA-AG-A002 
        0.92         1.02         0.99         0.99         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02         1.02        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6544 
       51.98        49.94        38.93        61.94        40.96         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
        1.45         0.69         0.72         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 
       60.00         7.99         9.99         5.03         7.36         6.97 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
        6.97        19.99         5.92         3.98         5.00         0.26 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5831 
      119.51        41.33       121.08        51.48        32.58         2.40 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6513 
        0.16         2.17         8.22         0.46         3.98         6.90 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 
        6.15         3.55         2.73         5.23         7.79         2.04 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 
        3.39         0.85         2.17         0.39         1.02         0.66 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        0.69         0.53         1.08         0.46        18.25        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                          0.49                           0.16 
      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                         57.24                         121.08 
      AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE 
                          5.54                           6.25 
[1] "0.5 - 57.2 (5.5)"  "0.2 - 121.1 (6.2)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "AMP PEAK 20(19P13.2) CNV"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"AMP PEAK 20(19P13.2) WILD-TYPE"       "AMP PEAK 20(19P13.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "AMP PEAK 20(19P13.2) CNV" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"AMP PEAK 20(19P13.2) WILD-TYPE" "AMP PEAK 20(19P13.2) WILD-TYPE" 
[1] "hr=" "3.9"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) CNV         16   16
  AMP PEAK 20(19P13.2) WILD-TYPE   58   72
        clus
vv       AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE
  FEMALE                       16                             58
  MALE                         16                             72
D20V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) CNV         32    0
  AMP PEAK 20(19P13.2) WILD-TYPE  111   13
                                clus
vv                               AMP PEAK 20(19P13.2) CNV
  RECTAL ADENOCARCINOMA                                32
  RECTAL MUCINOUS ADENOCARCINOMA                        0
                                clus
vv                               AMP PEAK 20(19P13.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     111
  RECTAL MUCINOUS ADENOCARCINOMA                             13
D20V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(19P13.2) CNV          0   32
  AMP PEAK 20(19P13.2) WILD-TYPE    6  124
     clus
vv    AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE
  NO                         0                              6
  YES                       32                            124
                                vv
clus                             M0 M1 M1A MX
  AMP PEAK 20(19P13.2) CNV       25  6   0  1
  AMP PEAK 20(19P13.2) WILD-TYPE 98 16   2 12
D20V6, multiclass
     clus
vv    AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE
  M0                        25                             98
  M1                         6                             16
  M1A                        0                              2
  MX                         1                             12
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 20(19P13.2) CNV       14  8   2   0   0  7   0   1  0
  AMP PEAK 20(19P13.2) WILD-TYPE 69 27   2   5   1 16   2   6  1
D20V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  AMP PEAK 20(19P13.2) CNV       25  1  3  0
  AMP PEAK 20(19P13.2) WILD-TYPE 96  1  9  3
D20V8, multiclass
    clus
vv   AMP PEAK 20(19P13.2) CNV AMP PEAK 20(19P13.2) WILD-TYPE
  R0                       25                             96
  R1                        1                              1
  R2                        3                              9
  RX                        0                              3
D20V9, continuous
D20V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 20(19P13.2) CNV             4        2         5         1         1
  AMP PEAK 20(19P13.2) WILD-TYPE      26        6        33         1         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 20(19P13.2) CNV               1          0          7          4
  AMP PEAK 20(19P13.2) WILD-TYPE         4          9         16          9
                                vv
clus                             STAGE IV STAGE IVA
  AMP PEAK 20(19P13.2) CNV              4         1
  AMP PEAK 20(19P13.2) WILD-TYPE       13         8
D20V11, multiclass

Clustering(21) Variable = Amp Peak 21(20q11.21)
D21V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 21(20Q11.21) CNV       106  11
  AMP PEAK 21(20Q11.21) WILD-TYPE  13   0
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                            117                              13 
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                             11                               0 
$`AMP PEAK 21(20Q11.21) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 
       19.53        15.85        11.77        10.62        19.10        17.62 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       10.39        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 
        1.02         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         0.99        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02        12.00        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       51.98         1.94        38.93        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
        1.45         0.69         0.72         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01         9.99         5.03         8.98 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
        7.36         6.97        27.91         6.97        19.99         5.92 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
        3.98         5.00       119.51        41.33        57.24       121.08 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
       24.13        51.48        32.58         0.49         2.40         7.63 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
        2.17         8.22         0.46         3.98         0.66         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-7002 
        7.10         6.15         3.98         2.73         5.23         2.76 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 
        3.39         0.85         2.17         0.39         1.02         0.66 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
        0.69         0.53         1.08         0.76         0.46        18.25 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       47.70        47.08        20.91 

$`AMP PEAK 21(20Q11.21) WILD-TYPE`
TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3575 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A025 
       13.55        12.72        12.00         1.02        20.94        49.94 
TCGA-AG-A02N TCGA-CI-6620 TCGA-DT-5265 TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6917 
       61.94         6.02         0.26         0.16         3.55         7.79 
TCGA-EI-7004 
        2.04 

      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                           0.39                            0.16 
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                         121.08                           61.94 
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                           6.15                            7.79 
[1] "0.4 - 121.1 (6.2)" "0.2 - 61.9 (7.8)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3726                      TCGA-AG-3727 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A020                      TCGA-AG-A023 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-G5-6572                      TCGA-G5-6641 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3726                      TCGA-AG-3727 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A020                      TCGA-AG-A023 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-G5-6572                      TCGA-G5-6641 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3726                      TCGA-AG-3727 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A020                      TCGA-AG-A023 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "AMP PEAK 21(20Q11.21) CNV" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 21(20Q11.21) WILD-TYPE"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
                     TCGA-G5-6572                      TCGA-G5-6641 
      "AMP PEAK 21(20Q11.21) CNV"       "AMP PEAK 21(20Q11.21) CNV" 
[1] "hr="     "2.2e+08"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) CNV         65   78
  AMP PEAK 21(20Q11.21) WILD-TYPE    9   10
        clus
vv       AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  FEMALE                        65                               9
  MALE                          78                              10
D21V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) CNV        132    7
  AMP PEAK 21(20Q11.21) WILD-TYPE   11    6
                                clus
vv                               AMP PEAK 21(20Q11.21) CNV
  RECTAL ADENOCARCINOMA                                132
  RECTAL MUCINOUS ADENOCARCINOMA                         7
                                clus
vv                               AMP PEAK 21(20Q11.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       11
  RECTAL MUCINOUS ADENOCARCINOMA                               6
D21V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) CNV          5  138
  AMP PEAK 21(20Q11.21) WILD-TYPE    1   18
     clus
vv    AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  NO                          5                               1
  YES                       138                              18
                                 vv
clus                               M0  M1 M1A  MX
  AMP PEAK 21(20Q11.21) CNV       106  20   2  13
  AMP PEAK 21(20Q11.21) WILD-TYPE  17   2   0   0
D21V6, multiclass
     clus
vv    AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  M0                        106                              17
  M1                         20                               2
  M1A                         2                               0
  MX                         13                               0
                                 vv
clus                              N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 21(20Q11.21) CNV       69 33   4   5   1 21   2   6  1
  AMP PEAK 21(20Q11.21) WILD-TYPE 14  2   0   0   0  2   0   1  0
D21V7, multiclass
                                 vv
clus                               R0  R1  R2  RX
  AMP PEAK 21(20Q11.21) CNV       106   2  11   2
  AMP PEAK 21(20Q11.21) WILD-TYPE  15   0   1   1
D21V8, multiclass
    clus
vv   AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  R0                       106                              15
  R1                         2                               0
  R2                        11                               1
  RX                         2                               1
D21V9, continuous
D21V10, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  AMP PEAK 21(20Q11.21) CNV            26        5        31         2
  AMP PEAK 21(20Q11.21) WILD-TYPE       4        3         7         0
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 21(20Q11.21) CNV               2         5          8         23
  AMP PEAK 21(20Q11.21) WILD-TYPE         0         0          1          0
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 21(20Q11.21) CNV               12       16         7
  AMP PEAK 21(20Q11.21) WILD-TYPE          1        1         2
D21V11, multiclass

Clustering(22) Variable = Amp Peak 22(20q11.23)
D22V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 22(20Q11.23) CNV       107  11
  AMP PEAK 22(20Q11.23) WILD-TYPE  12   0
      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                            118                              12 
      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                             11                               0 
$`AMP PEAK 22(20Q11.23) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 
       19.53        15.85        11.77        10.62        19.10        17.62 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       10.39        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 
        1.02         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         0.99        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02        12.00        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       51.98         1.94        38.93        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
        1.45         0.69         0.72         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01         9.99         5.03 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
        8.98         7.36         6.97        27.91         6.97        19.99 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
        5.92         3.98         5.00       119.51        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
      121.08        24.13        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
        7.63         2.17         8.22         0.46         3.98         0.66 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        6.90         7.10         6.15         3.98         2.73         5.23 
TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
        2.76         3.39         0.85         2.17         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.66         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        47.70        47.08        20.91 

$`AMP PEAK 22(20Q11.23) WILD-TYPE`
TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3575 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A025 
       13.55        12.72        12.00         1.02        20.94        49.94 
TCGA-AG-A02N TCGA-DT-5265 TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7004 
       61.94         0.26         0.16         3.55         7.79         2.04 

      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                           0.39                            0.16 
      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                         121.08                           61.94 
      AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE 
                          6.085                           9.895 
[1] "0.4 - 121.1 (6.1)" "0.2 - 61.9 (9.9)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3726                      TCGA-AG-3727 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A020                      TCGA-AG-A023 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-G5-6572                      TCGA-G5-6641 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3726                      TCGA-AG-3727 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A020                      TCGA-AG-A023 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-G5-6572                      TCGA-G5-6641 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3726                      TCGA-AG-3727 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A020                      TCGA-AG-A023 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "AMP PEAK 22(20Q11.23) CNV" "AMP PEAK 22(20Q11.23) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 22(20Q11.23) WILD-TYPE"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
                     TCGA-G5-6572                      TCGA-G5-6641 
      "AMP PEAK 22(20Q11.23) CNV"       "AMP PEAK 22(20Q11.23) CNV" 
[1] "hr="     "2.2e+08"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.23) CNV         66   78
  AMP PEAK 22(20Q11.23) WILD-TYPE    8   10
        clus
vv       AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE
  FEMALE                        66                               8
  MALE                          78                              10
D22V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.23) CNV        133    7
  AMP PEAK 22(20Q11.23) WILD-TYPE   10    6
                                clus
vv                               AMP PEAK 22(20Q11.23) CNV
  RECTAL ADENOCARCINOMA                                133
  RECTAL MUCINOUS ADENOCARCINOMA                         7
                                clus
vv                               AMP PEAK 22(20Q11.23) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       10
  RECTAL MUCINOUS ADENOCARCINOMA                               6
D22V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 22(20Q11.23) CNV          5  139
  AMP PEAK 22(20Q11.23) WILD-TYPE    1   17
     clus
vv    AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE
  NO                          5                               1
  YES                       139                              17
                                 vv
clus                               M0  M1 M1A  MX
  AMP PEAK 22(20Q11.23) CNV       106  21   2  13
  AMP PEAK 22(20Q11.23) WILD-TYPE  17   1   0   0
D22V6, multiclass
     clus
vv    AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE
  M0                        106                              17
  M1                         21                               1
  M1A                         2                               0
  MX                         13                               0
                                 vv
clus                              N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 22(20Q11.23) CNV       69 34   4   5   1 21   2   6  1
  AMP PEAK 22(20Q11.23) WILD-TYPE 14  1   0   0   0  2   0   1  0
D22V7, multiclass
                                 vv
clus                               R0  R1  R2  RX
  AMP PEAK 22(20Q11.23) CNV       106   2  11   2
  AMP PEAK 22(20Q11.23) WILD-TYPE  15   0   1   1
D22V8, multiclass
    clus
vv   AMP PEAK 22(20Q11.23) CNV AMP PEAK 22(20Q11.23) WILD-TYPE
  R0                       106                              15
  R1                         2                               0
  R2                        11                               1
  RX                         2                               1
D22V9, continuous
D22V10, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  AMP PEAK 22(20Q11.23) CNV            26        5        31         2
  AMP PEAK 22(20Q11.23) WILD-TYPE       4        3         7         0
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 22(20Q11.23) CNV               2         5          8         23
  AMP PEAK 22(20Q11.23) WILD-TYPE         0         0          1          0
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 22(20Q11.23) CNV               12       16         8
  AMP PEAK 22(20Q11.23) WILD-TYPE          1        1         1
D22V11, multiclass

Clustering(23) Variable = Amp Peak 23(20q13.31)
D23V1, survival
                                 sevent
clus2                               0   1
  AMP PEAK 23(20Q13.31) CNV       108  11
  AMP PEAK 23(20Q13.31) WILD-TYPE  11   0
      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                            119                              11 
      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                             11                               0 
$`AMP PEAK 23(20Q13.31) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 
       17.62        10.39        14.50         8.45         7.59         6.35 
TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 
        7.33         1.02         1.02         2.01         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        0.99         0.99         7.96         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A008 
        1.02         1.02         1.02         1.02         0.99        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
        1.02         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       10.98        51.98         1.94        38.93        40.96        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
        0.49         1.45         0.69         0.72         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
       10.19         6.02         6.02         6.94         9.37         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
        5.03         8.98         7.36         6.97        27.91         6.97 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC 
       19.99         5.92         3.98         5.00       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
       57.24       121.08        24.13        51.48        32.58         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        2.40         7.63         2.17         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 
        0.66         6.90         7.10         6.15         3.98         2.73 
TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
        5.23         2.76         3.39         0.85         2.17         0.39 
TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        1.02         0.66         0.69         0.53         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.70        47.08        20.91 

$`AMP PEAK 23(20Q13.31) WILD-TYPE`
TCGA-AF-3400 TCGA-AG-3575 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A025 TCGA-AG-A02N 
       12.72        12.00         1.02        20.94        49.94        61.94 
TCGA-DT-5265 TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7004 
        0.26         0.16         3.55         7.79         2.04 

      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                           0.39                            0.16 
      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                         121.08                           61.94 
      AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE 
                           6.15                            7.79 
[1] "0.4 - 121.1 (6.2)" "0.2 - 61.9 (7.8)" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3726                      TCGA-AG-3727 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A020                      TCGA-AG-A023 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-G5-6572                      TCGA-G5-6641 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3726                      TCGA-AG-3727 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A020                      TCGA-AG-A023 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-G5-6572                      TCGA-G5-6641 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2690                      TCGA-AF-2691 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3599                      TCGA-AG-3605 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3726                      TCGA-AG-3727 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-3896                      TCGA-AG-3999 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A020                      TCGA-AG-A023 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "AMP PEAK 23(20Q13.31) CNV" "AMP PEAK 23(20Q13.31) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"AMP PEAK 23(20Q13.31) WILD-TYPE"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
                     TCGA-G5-6572                      TCGA-G5-6641 
      "AMP PEAK 23(20Q13.31) CNV"       "AMP PEAK 23(20Q13.31) CNV" 
[1] "hr="     "2.2e+08"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q13.31) CNV         67   78
  AMP PEAK 23(20Q13.31) WILD-TYPE    7   10
        clus
vv       AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE
  FEMALE                        67                               7
  MALE                          78                              10
D23V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q13.31) CNV        133    7
  AMP PEAK 23(20Q13.31) WILD-TYPE   10    6
                                clus
vv                               AMP PEAK 23(20Q13.31) CNV
  RECTAL ADENOCARCINOMA                                133
  RECTAL MUCINOUS ADENOCARCINOMA                         7
                                clus
vv                               AMP PEAK 23(20Q13.31) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       10
  RECTAL MUCINOUS ADENOCARCINOMA                               6
D23V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 23(20Q13.31) CNV          5  140
  AMP PEAK 23(20Q13.31) WILD-TYPE    1   16
     clus
vv    AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE
  NO                          5                               1
  YES                       140                              16
                                 vv
clus                               M0  M1 M1A  MX
  AMP PEAK 23(20Q13.31) CNV       107  21   2  13
  AMP PEAK 23(20Q13.31) WILD-TYPE  16   1   0   0
D23V6, multiclass
     clus
vv    AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE
  M0                        107                              16
  M1                         21                               1
  M1A                         2                               0
  MX                         13                               0
                                 vv
clus                              N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 23(20Q13.31) CNV       70 34   4   5   1 21   2   6  1
  AMP PEAK 23(20Q13.31) WILD-TYPE 13  1   0   0   0  2   0   1  0
D23V7, multiclass
                                 vv
clus                               R0  R1  R2  RX
  AMP PEAK 23(20Q13.31) CNV       107   2  11   2
  AMP PEAK 23(20Q13.31) WILD-TYPE  14   0   1   1
D23V8, multiclass
    clus
vv   AMP PEAK 23(20Q13.31) CNV AMP PEAK 23(20Q13.31) WILD-TYPE
  R0                       107                              14
  R1                         2                               0
  R2                        11                               1
  RX                         2                               1
D23V9, continuous
D23V10, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  AMP PEAK 23(20Q13.31) CNV            26        5        32         2
  AMP PEAK 23(20Q13.31) WILD-TYPE       4        3         6         0
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  AMP PEAK 23(20Q13.31) CNV               2         5          8         23
  AMP PEAK 23(20Q13.31) WILD-TYPE         0         0          1          0
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  AMP PEAK 23(20Q13.31) CNV               12       16         8
  AMP PEAK 23(20Q13.31) WILD-TYPE          1        1         1
D23V11, multiclass

Clustering(24) Variable = Amp Peak 24(Xp22.2)
D24V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 24(XP22.2) CNV       23  3
  AMP PEAK 24(XP22.2) WILD-TYPE 96  8
      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                           26                           104 
      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                            3                             8 
$`AMP PEAK 24(XP22.2) CNV`
TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4022 
       10.39         8.45         6.35         1.02         1.02         0.99 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A02N 
       15.91        13.02         1.02        12.00        63.98        61.94 
TCGA-AG-A032 TCGA-AH-6644 TCGA-AH-6897 TCGA-DC-4745 TCGA-DC-6154 TCGA-DT-5265 
       38.01         0.72         4.60        10.98         8.98         0.26 
TCGA-DY-A1DC TCGA-DY-A1H8 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6885 TCGA-EI-7002 
       41.33        32.58         0.46         0.66         5.23         2.76 
TCGA-F5-6863 TCGA-G5-6235 
        0.76        47.70 

$`AMP PEAK 24(XP22.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3575 
       12.72        17.62        14.50         7.59         7.33        12.00 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 
        1.02         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 
       23.01        17.03         1.02        12.00        70.03        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AH-6544 
       51.98        49.94         1.94        38.93        40.96         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
        1.45         0.69         1.81        10.19         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.94         9.37         4.70        13.97        60.00         7.99 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
       11.01         9.99         5.03         7.36         6.97        27.91 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA 
        6.97        19.99         5.92         3.98         5.00       119.51 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 
       57.24       121.08        24.13        51.48         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6513 
        7.63         0.16         2.17         8.22         3.98         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 
        7.10         6.15         3.55         3.98         2.73         7.79 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
        2.04         3.39         0.85         2.17         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6233 
        0.66         0.69         0.53         1.08         0.46        18.25 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                         0.26                          0.16 
      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                        63.98                        121.08 
      AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE 
                        7.400                         6.085 
[1] "0.3 - 64.0 (7.4)"  "0.2 - 121.1 (6.1)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "AMP PEAK 24(XP22.2) CNV"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
      "AMP PEAK 24(XP22.2) CNV"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "AMP PEAK 24(XP22.2) CNV"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
      "AMP PEAK 24(XP22.2) CNV"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "AMP PEAK 24(XP22.2) CNV"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
      "AMP PEAK 24(XP22.2) CNV"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "AMP PEAK 24(XP22.2) CNV" "AMP PEAK 24(XP22.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK 24(XP22.2) WILD-TYPE"       "AMP PEAK 24(XP22.2) CNV" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK 24(XP22.2) WILD-TYPE" "AMP PEAK 24(XP22.2) WILD-TYPE" 
[1] "hr=" "1.1"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XP22.2) CNV         20   13
  AMP PEAK 24(XP22.2) WILD-TYPE   54   75
        clus
vv       AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE
  FEMALE                      20                            54
  MALE                        13                            75
D24V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XP22.2) CNV         32    1
  AMP PEAK 24(XP22.2) WILD-TYPE  111   12
                                clus
vv                               AMP PEAK 24(XP22.2) CNV
  RECTAL ADENOCARCINOMA                               32
  RECTAL MUCINOUS ADENOCARCINOMA                       1
                                clus
vv                               AMP PEAK 24(XP22.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    111
  RECTAL MUCINOUS ADENOCARCINOMA                            12
D24V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 24(XP22.2) CNV          0   33
  AMP PEAK 24(XP22.2) WILD-TYPE    6  123
     clus
vv    AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE
  NO                        0                             6
  YES                      33                           123
                               vv
clus                             M0  M1 M1A  MX
  AMP PEAK 24(XP22.2) CNV        23   7   0   3
  AMP PEAK 24(XP22.2) WILD-TYPE 100  15   2  10
D24V6, multiclass
     clus
vv    AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE
  M0                       23                           100
  M1                        7                            15
  M1A                       0                             2
  MX                        3                            10
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 24(XP22.2) CNV       15  8   2   1   0  5   0   1  1
  AMP PEAK 24(XP22.2) WILD-TYPE 68 27   2   4   1 18   2   6  0
D24V7, multiclass
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 24(XP22.2) CNV       24  1  4  1
  AMP PEAK 24(XP22.2) WILD-TYPE 97  1  8  2
D24V8, multiclass
    clus
vv   AMP PEAK 24(XP22.2) CNV AMP PEAK 24(XP22.2) WILD-TYPE
  R0                      24                            97
  R1                       1                             1
  R2                       4                             8
  RX                       1                             2
D24V9, continuous
D24V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 24(XP22.2) CNV             5        5         3         0         0
  AMP PEAK 24(XP22.2) WILD-TYPE      25        3        35         2         2
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 24(XP22.2) CNV               0          2          7          2
  AMP PEAK 24(XP22.2) WILD-TYPE         5          7         16         11
                               vv
clus                            STAGE IV STAGE IVA
  AMP PEAK 24(XP22.2) CNV              5         2
  AMP PEAK 24(XP22.2) WILD-TYPE       12         7
D24V11, multiclass

Clustering(25) Variable = Amp Peak 25(Xq27.3)
D25V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 25(XQ27.3) CNV       27  2
  AMP PEAK 25(XQ27.3) WILD-TYPE 92  9
      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                           29                           101 
      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                            2                             9 
$`AMP PEAK 25(XQ27.3) CNV`
TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3913 TCGA-AF-5654 TCGA-AG-3575 TCGA-AG-3587 
       13.55        19.10        10.39         8.45        12.00         1.02 
TCGA-AG-3726 TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4022 
        7.96         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6644 
       15.91        13.02         1.02        40.96        38.01         0.72 
TCGA-CI-6623 TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-6154 TCGA-DC-6156 TCGA-DY-A1DD 
        9.37        60.00        10.98         8.98         6.97        57.24 
TCGA-DY-A1DE TCGA-EI-6885 TCGA-F5-6465 TCGA-F5-6810 TCGA-F5-6863 
      121.08         5.23         3.39         0.39         0.76 

$`AMP PEAK 25(XQ27.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 
       19.53        15.85        11.77        10.62        12.72        17.62 
TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 
       14.50         7.59         6.35         7.33         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3731 
        2.01         1.02         0.99         0.99         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       23.01        17.03         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       63.98        10.98        51.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 
       61.94         0.49         1.45         0.69         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 
       10.19         6.02         6.02         6.94         4.70        13.97 
TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 
        7.99        11.01         9.99         5.03         7.36        27.91 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
        6.97        19.99         5.92         3.98         5.00         0.26 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
      119.51        41.33        24.13        51.48        32.58         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
        2.40         7.63         0.16         2.17         8.22         0.46 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 
        3.98         0.66         6.90         7.10         6.15         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 
        3.98         2.73         7.79         2.76         2.04         0.85 
TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        2.17         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.70        47.08        20.91 

      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                         0.39                          0.16 
      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                       121.08                        119.51 
      AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE 
                         8.45                          6.02 
[1] "0.4 - 121.1 (8.4)" "0.2 - 119.5 (6.0)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "AMP PEAK 25(XQ27.3) CNV"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"AMP PEAK 25(XQ27.3) WILD-TYPE"       "AMP PEAK 25(XQ27.3) CNV" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "AMP PEAK 25(XQ27.3) CNV" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"AMP PEAK 25(XQ27.3) WILD-TYPE" "AMP PEAK 25(XQ27.3) WILD-TYPE" 
[1] "hr=" "1.8"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ27.3) CNV         20   18
  AMP PEAK 25(XQ27.3) WILD-TYPE   54   70
        clus
vv       AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE
  FEMALE                      20                            54
  MALE                        18                            70
D25V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ27.3) CNV         34    1
  AMP PEAK 25(XQ27.3) WILD-TYPE  109   12
                                clus
vv                               AMP PEAK 25(XQ27.3) CNV
  RECTAL ADENOCARCINOMA                               34
  RECTAL MUCINOUS ADENOCARCINOMA                       1
                                clus
vv                               AMP PEAK 25(XQ27.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    109
  RECTAL MUCINOUS ADENOCARCINOMA                            12
D25V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 25(XQ27.3) CNV          0   38
  AMP PEAK 25(XQ27.3) WILD-TYPE    6  118
     clus
vv    AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE
  NO                        0                             6
  YES                      38                           118
                               vv
clus                            M0 M1 M1A MX
  AMP PEAK 25(XQ27.3) CNV       28  6   1  3
  AMP PEAK 25(XQ27.3) WILD-TYPE 95 16   1 10
D25V6, multiclass
     clus
vv    AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE
  M0                       28                            95
  M1                        6                            16
  M1A                       1                             1
  MX                        3                            10
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  AMP PEAK 25(XQ27.3) CNV       18  7   2   1   0  6   1   2  1
  AMP PEAK 25(XQ27.3) WILD-TYPE 65 28   2   4   1 17   1   5  0
D25V7, multiclass
                               vv
clus                            R0 R1 R2 RX
  AMP PEAK 25(XQ27.3) CNV       27  0  4  1
  AMP PEAK 25(XQ27.3) WILD-TYPE 94  2  8  2
D25V8, multiclass
    clus
vv   AMP PEAK 25(XQ27.3) CNV AMP PEAK 25(XQ27.3) WILD-TYPE
  R0                      27                            94
  R1                       0                             2
  R2                       4                             8
  RX                       1                             2
D25V9, continuous
D25V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  AMP PEAK 25(XQ27.3) CNV             9        2         7         0         0
  AMP PEAK 25(XQ27.3) WILD-TYPE      21        6        31         2         2
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  AMP PEAK 25(XQ27.3) CNV               0          0          8          4
  AMP PEAK 25(XQ27.3) WILD-TYPE         5          9         15          9
                               vv
clus                            STAGE IV STAGE IVA
  AMP PEAK 25(XQ27.3) CNV              4         2
  AMP PEAK 25(XQ27.3) WILD-TYPE       13         7
D25V11, multiclass

Clustering(26) Variable = Del Peak  1(1p36.11)
D26V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.11) CNV       50  6
  DEL PEAK  1(1P36.11) WILD-TYPE 69  5
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                            56                             74 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                             6                              5 
$`DEL PEAK  1(1P36.11) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3913 
       19.53        11.77        10.62        13.55        19.10        10.39 
TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3727 
       14.50         7.59         1.02         2.01         1.02         0.95 
TCGA-AG-3731 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A008 
        1.02         1.02         0.92         1.02         1.02        13.91 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A023 
       25.94        23.01        12.00        70.03        63.98        51.98 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-BM-6198 
        1.94        38.93        38.01         0.49         0.69        10.19 
TCGA-CI-6622 TCGA-CI-6624 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 
        6.94         4.70        11.01         5.03         8.98         7.36 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DY-A0XA 
        6.97        27.91        19.99         5.92         5.00       119.51 
TCGA-DY-A1DE TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6511 
      121.08        32.58         0.49         2.40         7.63         3.98 
TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6864 
        2.76         2.04         2.17         1.02         0.69         0.46 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

$`DEL PEAK  1(1P36.11) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 
       15.85        12.72        17.62         8.45         6.35         7.33 
TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 
       12.00         1.02         1.02         0.99         0.99         7.96 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A011 
        1.02         1.02         0.99        20.94         6.02        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A020 
       15.91        13.02         1.02         1.02        12.00        10.98 
TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 
       49.94        61.94        40.96         1.45         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5917 
        1.81         6.02         6.02         9.37        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6158 TCGA-DC-6682 TCGA-DT-5265 
        7.99        10.98         9.99         6.97         3.98         0.26 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EI-6507 TCGA-EI-6508 
       41.33        57.24        24.13        51.48         0.16         2.17 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
        8.22         0.46         0.66         6.90         7.10         6.15 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6465 
        3.55         3.98         2.73         5.23         7.79         3.39 
TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        0.85         0.39         0.66         0.53         1.08         0.76 
TCGA-G5-6233 TCGA-G5-6235 
       18.25        47.70 

      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                          0.46                           0.16 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                        121.08                          61.94 
      DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE 
                         7.475                          6.020 
[1] "0.5 - 121.1 (7.5)" "0.2 - 61.9 (6.0)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK  1(1P36.11) CNV" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK  1(1P36.11) WILD-TYPE"       "DEL PEAK  1(1P36.11) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "DEL PEAK  1(1P36.11) CNV"       "DEL PEAK  1(1P36.11) CNV" 
[1] "hr=" "1.1"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) CNV         31   40
  DEL PEAK  1(1P36.11) WILD-TYPE   43   48
        clus
vv       DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  FEMALE                       31                             43
  MALE                         40                             48
D26V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) CNV         60    7
  DEL PEAK  1(1P36.11) WILD-TYPE   83    6
                                clus
vv                               DEL PEAK  1(1P36.11) CNV
  RECTAL ADENOCARCINOMA                                60
  RECTAL MUCINOUS ADENOCARCINOMA                        7
                                clus
vv                               DEL PEAK  1(1P36.11) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      83
  RECTAL MUCINOUS ADENOCARCINOMA                              6
D26V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) CNV          3   68
  DEL PEAK  1(1P36.11) WILD-TYPE    3   88
     clus
vv    DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  NO                         3                              3
  YES                       68                             88
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK  1(1P36.11) CNV       51 11   2  5
  DEL PEAK  1(1P36.11) WILD-TYPE 72 11   0  8
D26V6, multiclass
     clus
vv    DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  M0                        51                             72
  M1                        11                             11
  M1A                        2                              0
  MX                         5                              8
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK  1(1P36.11) CNV       31 17   2   3   0 11   1   5  0
  DEL PEAK  1(1P36.11) WILD-TYPE 52 18   2   2   1 12   1   2  1
D26V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK  1(1P36.11) CNV       51  1  7  0
  DEL PEAK  1(1P36.11) WILD-TYPE 70  1  5  3
D26V8, multiclass
    clus
vv   DEL PEAK  1(1P36.11) CNV DEL PEAK  1(1P36.11) WILD-TYPE
  R0                       51                             70
  R1                        1                              1
  R2                        7                              5
  RX                        0                              3
D26V9, continuous
D26V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  1(1P36.11) CNV            11        3        15         2         0
  DEL PEAK  1(1P36.11) WILD-TYPE      19        5        23         0         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  1(1P36.11) CNV               2          3         11          7
  DEL PEAK  1(1P36.11) WILD-TYPE         3          6         12          6
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK  1(1P36.11) CNV              7         6
  DEL PEAK  1(1P36.11) WILD-TYPE       10         3
D26V11, multiclass

Clustering(27) Variable = Del Peak  2(1p33)
D27V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  2(1P33) CNV       36  3
  DEL PEAK  2(1P33) WILD-TYPE 83  8
      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                         39                          91 
      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                          3                           8 
$`DEL PEAK  2(1P33) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 
       19.53        11.77        13.55        14.50         7.59         1.02 
TCGA-AG-3731 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01L 
        1.02         1.02         1.02        25.94        23.01        12.00 
TCGA-AG-A01W TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 
       70.03         1.94        38.93        38.01         0.49         0.69 
TCGA-BM-6198 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-DC-4745 TCGA-DC-4749 
       10.19         9.37         4.70        13.97        10.98        11.01 
TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6160 TCGA-DY-A0XA TCGA-DY-A1DE 
        5.03         7.36        27.91        19.99       119.51       121.08 
TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6511 TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6702 
        0.49         7.63         3.98         5.23         2.76         2.17 
TCGA-F5-6811 TCGA-F5-6813 TCGA-G5-6572 
        1.02         0.69        47.08 

$`DEL PEAK  2(1P33) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       15.85        10.62        19.10        12.72        17.62        10.39 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 
        8.45         6.35         7.33        12.00         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       13.91         6.02        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
        1.02        12.00        63.98        10.98        51.98        49.94 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
       61.94        40.96         1.45         0.72         4.60         1.81 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-5337 
        6.02         6.02         6.94        60.00         7.99         9.99 
TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
        8.98         6.97         6.97         5.92         3.98         5.00 
TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 
        0.26        41.33        57.24        24.13        51.48        32.58 
TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 
        2.40         0.16         2.17         8.22         0.46         0.66 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
        6.90         7.10         6.15         3.55         3.98         2.73 
TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6812 
        7.79         2.04         3.39         0.85         0.39         0.66 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        0.53         1.08         0.76         0.46        18.25        47.70 
TCGA-G5-6641 
       20.91 

      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                       0.49                        0.16 
      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                     121.08                       63.98 
      DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE 
                       9.37                        6.02 
[1] "0.5 - 121.1 (9.4)" "0.2 - 64.0 (6.0)" 
                 TCGA-AF-2687                  TCGA-AF-2689 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-4001                  TCGA-AG-4007 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AH-6544                  TCGA-AH-6547 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-CL-4957                  TCGA-CL-5917 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-4749                  TCGA-DC-5337 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-4001                  TCGA-AG-4007 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AH-6544                  TCGA-AH-6547 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-CL-4957                  TCGA-CL-5917 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-4749                  TCGA-DC-5337 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-4001                  TCGA-AG-4007 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-AH-6544                  TCGA-AH-6547 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
      "DEL PEAK  2(1P33) CNV"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-CL-4957                  TCGA-CL-5917 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DC-4749                  TCGA-DC-5337 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  2(1P33) WILD-TYPE"       "DEL PEAK  2(1P33) CNV" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  2(1P33) WILD-TYPE" "DEL PEAK  2(1P33) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
      "DEL PEAK  2(1P33) CNV" "DEL PEAK  2(1P33) WILD-TYPE" 
[1] "hr=" "1.5"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1P33) CNV         22   27
  DEL PEAK  2(1P33) WILD-TYPE   52   61
        clus
vv       DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE
  FEMALE                    22                          52
  MALE                      27                          61
D27V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1P33) CNV         45    1
  DEL PEAK  2(1P33) WILD-TYPE   98   12
                                clus
vv                               DEL PEAK  2(1P33) CNV
  RECTAL ADENOCARCINOMA                             45
  RECTAL MUCINOUS ADENOCARCINOMA                     1
                                clus
vv                               DEL PEAK  2(1P33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   98
  RECTAL MUCINOUS ADENOCARCINOMA                          12
D27V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1P33) CNV          3   46
  DEL PEAK  2(1P33) WILD-TYPE    3  110
     clus
vv    DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE
  NO                      3                           3
  YES                    46                         110
                             vv
clus                          M0 M1 M1A MX
  DEL PEAK  2(1P33) CNV       36  8   0  3
  DEL PEAK  2(1P33) WILD-TYPE 87 14   2 10
D27V6, multiclass
     clus
vv    DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE
  M0                     36                          87
  M1                      8                          14
  M1A                     0                           2
  MX                      3                          10
                             vv
clus                          N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK  2(1P33) CNV       22 13   2   3   0  6   0   2  0
  DEL PEAK  2(1P33) WILD-TYPE 61 22   2   2   1 17   2   5  1
D27V7, multiclass
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  2(1P33) CNV       33  1  4  0
  DEL PEAK  2(1P33) WILD-TYPE 88  1  8  3
D27V8, multiclass
    clus
vv   DEL PEAK  2(1P33) CNV DEL PEAK  2(1P33) WILD-TYPE
  R0                    33                          88
  R1                     1                           1
  R2                     4                           8
  RX                     0                           3
D27V9, continuous
D27V10, continuous
                             vv
clus                          STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  2(1P33) CNV             6        2        13         1         0
  DEL PEAK  2(1P33) WILD-TYPE      24        6        25         1         2
                             vv
clus                          STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  2(1P33) CNV               1          2          9          4
  DEL PEAK  2(1P33) WILD-TYPE         4          7         14          9
                             vv
clus                          STAGE IV STAGE IVA
  DEL PEAK  2(1P33) CNV              6         2
  DEL PEAK  2(1P33) WILD-TYPE       11         7
D27V11, multiclass

Clustering(28) Variable = Del Peak  3(1p13.2)
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(1P13.2) CNV       37  4
  DEL PEAK  3(1P13.2) WILD-TYPE 82  7
      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                           41                            89 
      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                            4                             7 
$`DEL PEAK  3(1P13.2) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 
       19.53        11.77        13.55        14.50         7.59         1.02 
TCGA-AG-3731 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01L 
        1.02         1.02         1.02        25.94        23.01        12.00 
TCGA-AG-A01W TCGA-AG-A026 TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-BM-6198 
       70.03         1.94        38.01         0.49         0.69        10.19 
TCGA-CI-6623 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6160 
        9.37        11.01         5.03         7.36        27.91        19.99 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DE TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6509 
      119.51        41.33       121.08         0.49         7.63         8.22 
TCGA-EI-6511 TCGA-EI-6883 TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6702 TCGA-F5-6811 
        3.98         3.98         5.23         2.76         2.17         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6572 
        0.66         0.69         0.76        18.25        47.08 

$`DEL PEAK  3(1P13.2) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       15.85        10.62        19.10        12.72        17.62        10.39 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 
        8.45         6.35         7.33        12.00         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       13.91         6.02        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
        1.02        12.00        63.98        10.98        51.98        49.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 
       38.93        61.94        40.96         1.45         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 
        1.81         6.02         6.02         6.94         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 
       60.00         7.99        10.98         9.99         8.98         6.97 
TCGA-DC-6158 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DD 
        6.97         5.92         3.98         5.00         0.26        57.24 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 
       24.13        51.48        32.58         2.40         0.16         2.17 
TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 
        0.46         0.66         6.90         7.10         6.15         3.55 
TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 
        2.73         7.79         2.04         3.39         0.85         0.39 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6641 
        0.53         1.08         0.46        47.70        20.91 

      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                         0.49                          0.16 
      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                       121.08                         63.98 
      DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE 
                         7.63                          6.02 
[1] "0.5 - 121.1 (7.6)" "0.2 - 64.0 (6.0)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK  3(1P13.2) WILD-TYPE"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
      "DEL PEAK  3(1P13.2) CNV"       "DEL PEAK  3(1P13.2) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  3(1P13.2) WILD-TYPE" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
      "DEL PEAK  3(1P13.2) CNV" "DEL PEAK  3(1P13.2) WILD-TYPE" 
[1] "hr=" "1"  
D28V2, continuous
D28V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P13.2) CNV         22   29
  DEL PEAK  3(1P13.2) WILD-TYPE   52   59
        clus
vv       DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE
  FEMALE                      22                            52
  MALE                        29                            59
D28V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P13.2) CNV         46    2
  DEL PEAK  3(1P13.2) WILD-TYPE   97   11
                                clus
vv                               DEL PEAK  3(1P13.2) CNV
  RECTAL ADENOCARCINOMA                               46
  RECTAL MUCINOUS ADENOCARCINOMA                       2
                                clus
vv                               DEL PEAK  3(1P13.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     97
  RECTAL MUCINOUS ADENOCARCINOMA                            11
D28V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(1P13.2) CNV          3   48
  DEL PEAK  3(1P13.2) WILD-TYPE    3  108
     clus
vv    DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE
  NO                        3                             3
  YES                      48                           108
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK  3(1P13.2) CNV       39  8   0  2
  DEL PEAK  3(1P13.2) WILD-TYPE 84 14   2 11
D28V6, multiclass
     clus
vv    DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE
  M0                       39                            84
  M1                        8                            14
  M1A                       0                             2
  MX                        2                            11
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK  3(1P13.2) CNV       24 11   1   3   0  8   0   3  0
  DEL PEAK  3(1P13.2) WILD-TYPE 59 24   3   2   1 15   2   4  1
D28V7, multiclass
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  3(1P13.2) CNV       37  1  4  0
  DEL PEAK  3(1P13.2) WILD-TYPE 84  1  8  3
D28V8, multiclass
    clus
vv   DEL PEAK  3(1P13.2) CNV DEL PEAK  3(1P13.2) WILD-TYPE
  R0                      37                            84
  R1                       1                             1
  R2                       4                             8
  RX                       0                             3
D28V9, continuous
D28V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  3(1P13.2) CNV             5        2        15         1         2
  DEL PEAK  3(1P13.2) WILD-TYPE      25        6        23         1         0
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  3(1P13.2) CNV               0          1          9          5
  DEL PEAK  3(1P13.2) WILD-TYPE         5          8         14          8
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK  3(1P13.2) CNV              6         2
  DEL PEAK  3(1P13.2) WILD-TYPE       11         7
D28V11, multiclass

Clustering(29) Variable = Del Peak  4(2p12)
D29V1, survival
                             sevent
clus2                           0   1
  DEL PEAK  4(2P12) CNV        11   0
  DEL PEAK  4(2P12) WILD-TYPE 108  11
      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                         11                         119 
      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                          0                          11 
$`DEL PEAK  4(2P12) CNV`
TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A00H TCGA-AG-A02X 
        7.59         1.02         1.02         1.02        25.94        40.96 
TCGA-DC-6156 TCGA-DC-6682 TCGA-EF-5831 TCGA-EI-6508 TCGA-F5-6571 
        6.97         3.98         2.40         2.17         0.85 

$`DEL PEAK  4(2P12) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6655 
       12.72        17.62        10.39        14.50         8.45         6.35 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 
        7.33        12.00         1.02         2.01         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        0.99         0.99         7.96         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         0.99        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02        12.00        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 
       51.98        49.94         1.94        38.93        61.94        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
        0.49         1.45         0.69         0.72         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
       10.19         6.02         6.02         6.94         9.37         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
        5.03         8.98         7.36        27.91         6.97        19.99 
TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
        5.92         5.00         0.26       119.51        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EI-6506 
      121.08        24.13        51.48        32.58         0.49         7.63 
TCGA-EI-6507 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
        0.16         8.22         0.46         3.98         0.66         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        7.10         6.15         3.55         3.98         2.73         5.23 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6810 
        7.79         2.76         2.04         3.39         2.17         0.39 
TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        1.02         0.66         0.69         0.53         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.70        47.08        20.91 

      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                       0.85                        0.16 
      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                      40.96                      121.08 
      DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE 
                        2.4                         6.9 
[1] "0.8 - 41.0 (2.4)"  "0.2 - 121.1 (6.9)"
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-4001                  TCGA-AG-4007 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-4001                  TCGA-AG-4007 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-4001                  TCGA-AG-4007 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK  4(2P12) WILD-TYPE"       "DEL PEAK  4(2P12) CNV" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
      "DEL PEAK  4(2P12) CNV" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  4(2P12) WILD-TYPE" "DEL PEAK  4(2P12) WILD-TYPE" 
[1] "hr="     "2.7e+07"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2P12) CNV          7   10
  DEL PEAK  4(2P12) WILD-TYPE   67   78
        clus
vv       DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE
  FEMALE                     7                          67
  MALE                      10                          78
D29V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2P12) CNV         15    1
  DEL PEAK  4(2P12) WILD-TYPE  128   12
                                clus
vv                               DEL PEAK  4(2P12) CNV
  RECTAL ADENOCARCINOMA                             15
  RECTAL MUCINOUS ADENOCARCINOMA                     1
                                clus
vv                               DEL PEAK  4(2P12) WILD-TYPE
  RECTAL ADENOCARCINOMA                                  128
  RECTAL MUCINOUS ADENOCARCINOMA                          12
D29V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2P12) CNV          1   16
  DEL PEAK  4(2P12) WILD-TYPE    5  140
     clus
vv    DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE
  NO                      1                           5
  YES                    16                         140
                             vv
clus                           M0  M1 M1A  MX
  DEL PEAK  4(2P12) CNV        14   1   1   1
  DEL PEAK  4(2P12) WILD-TYPE 109  21   1  12
D29V6, multiclass
     clus
vv    DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE
  M0                     14                         109
  M1                      1                          21
  M1A                     1                           1
  MX                      1                          12
                             vv
clus                          N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK  4(2P12) CNV       10  1   1   1   0  3   0   1  0
  DEL PEAK  4(2P12) WILD-TYPE 73 34   3   4   1 20   2   6  1
D29V7, multiclass
                             vv
clus                           R0  R1  R2  RX
  DEL PEAK  4(2P12) CNV        14   0   1   0
  DEL PEAK  4(2P12) WILD-TYPE 107   2  11   3
D29V8, multiclass
    clus
vv   DEL PEAK  4(2P12) CNV DEL PEAK  4(2P12) WILD-TYPE
  R0                    14                         107
  R1                     0                           2
  R2                     1                          11
  RX                     0                           3
D29V9, continuous
D29V10, continuous
                             vv
clus                          STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  4(2P12) CNV             1        0         9         0         0
  DEL PEAK  4(2P12) WILD-TYPE      29        8        29         2         2
                             vv
clus                          STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  4(2P12) CNV               0          0          2          3
  DEL PEAK  4(2P12) WILD-TYPE         5          9         21         10
                             vv
clus                          STAGE IV STAGE IVA
  DEL PEAK  4(2P12) CNV              1         1
  DEL PEAK  4(2P12) WILD-TYPE       16         8
D29V11, multiclass

Clustering(30) Variable = Del Peak  5(3p14.2)
D30V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(3P14.2) CNV       20  2
  DEL PEAK  5(3P14.2) WILD-TYPE 99  9
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                           22                           108 
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                            2                             9 
$`DEL PEAK  5(3P14.2) CNV`
TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-4110 TCGA-AG-3581 TCGA-AG-3583 
       10.62        19.10        12.72        14.50         1.02         2.01 
TCGA-AG-3731 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A02G TCGA-AH-6544 
        1.02         1.02         1.02         6.02        38.93         0.49 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6623 TCGA-DC-5337 TCGA-DC-6158 TCGA-DC-6682 
       10.19         6.02         9.37         9.99         6.97         3.98 
TCGA-DT-5265 TCGA-EI-6508 TCGA-F5-6810 TCGA-G5-6233 
        0.26         2.17         0.39        18.25 

$`DEL PEAK  5(3P14.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-3911 TCGA-AF-3913 
       19.53        15.85        11.77        13.55        17.62        10.39 
TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3582 
        8.45         7.59         6.35         7.33        12.00         1.02 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4022 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       13.91        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
        1.02         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X 
       10.98        51.98        49.94         1.94        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
       38.01         1.45         0.69         0.72         4.60         1.81 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.02         6.94         4.70        13.97        60.00         7.99 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 
       10.98        11.01         5.03         8.98         7.36         6.97 
TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC 
       27.91        19.99         5.92         5.00       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
       57.24       121.08        24.13        51.48        32.58         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        2.40         7.63         0.16         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        0.66         6.90         7.10         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
        2.73         5.23         7.79         2.76         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        0.85         2.17         1.02         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        1.08         0.76         0.46        47.70        47.08        20.91 

      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                         0.26                          0.16 
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                        38.93                        121.08 
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                        6.020                         6.625 
[1] "0.3 - 38.9 (6.0)"  "0.2 - 121.1 (6.6)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK  5(3P14.2) CNV"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK  5(3P14.2) CNV"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK  5(3P14.2) CNV"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK  5(3P14.2) WILD-TYPE"       "DEL PEAK  5(3P14.2) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK  5(3P14.2) CNV" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
[1] "hr=" "4.9"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) CNV          7   22
  DEL PEAK  5(3P14.2) WILD-TYPE   67   66
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  FEMALE                       7                            67
  MALE                        22                            66
D30V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) CNV         23    3
  DEL PEAK  5(3P14.2) WILD-TYPE  120   10
                                clus
vv                               DEL PEAK  5(3P14.2) CNV
  RECTAL ADENOCARCINOMA                               23
  RECTAL MUCINOUS ADENOCARCINOMA                       3
                                clus
vv                               DEL PEAK  5(3P14.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    120
  RECTAL MUCINOUS ADENOCARCINOMA                            10
D30V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) CNV          2   27
  DEL PEAK  5(3P14.2) WILD-TYPE    4  129
     clus
vv    DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  NO                        2                             4
  YES                      27                           129
                               vv
clus                             M0  M1 M1A  MX
  DEL PEAK  5(3P14.2) CNV        19   7   0   2
  DEL PEAK  5(3P14.2) WILD-TYPE 104  15   2  11
D30V6, multiclass
     clus
vv    DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  M0                       19                           104
  M1                        7                            15
  M1A                       0                             2
  MX                        2                            11
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK  5(3P14.2) CNV       16  6   1   0   1  4   0   1  0
  DEL PEAK  5(3P14.2) WILD-TYPE 67 29   3   5   0 19   2   6  1
D30V7, multiclass
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK  5(3P14.2) CNV        18   0   5   1
  DEL PEAK  5(3P14.2) WILD-TYPE 103   2   7   2
D30V8, multiclass
    clus
vv   DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  R0                      18                           103
  R1                       0                             2
  R2                       5                             7
  RX                       1                             2
D30V9, continuous
D30V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  5(3P14.2) CNV             9        1         6         0         1
  DEL PEAK  5(3P14.2) WILD-TYPE      21        7        32         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  5(3P14.2) CNV               0          0          4          0
  DEL PEAK  5(3P14.2) WILD-TYPE         5          9         19         13
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK  5(3P14.2) CNV              6         1
  DEL PEAK  5(3P14.2) WILD-TYPE       11         8
D30V11, multiclass

Clustering(31) Variable = Del Peak  6(3q26.31)
D31V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  6(3Q26.31) CNV        12   3
  DEL PEAK  6(3Q26.31) WILD-TYPE 107   8
      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                            15                            115 
      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                             3                              8 
$`DEL PEAK  6(3Q26.31) CNV`
TCGA-AF-3400 TCGA-AF-4110 TCGA-AG-3583 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 
       12.72        14.50         2.01         0.99         1.02         1.02 
TCGA-AG-A026 TCGA-AG-A02G TCGA-BM-6198 TCGA-CI-6619 TCGA-DC-6682 TCGA-DT-5265 
        1.94        38.93        10.19         6.02         3.98         0.26 
TCGA-EI-6507 TCGA-EI-7002 TCGA-G5-6233 
        0.16         2.76        18.25 

$`DEL PEAK  6(3Q26.31) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       17.62        10.39         8.45         7.59         6.35         7.33 
TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
       12.00         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-3999 
        1.02         0.92         1.02         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         0.99        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       23.01        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
       12.00        12.00        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 
       49.94        61.94        40.96        38.01         0.49         1.45 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6620 TCGA-CI-6622 
        0.69         0.72         4.60         1.81         6.02         6.94 
TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        9.37         4.70        13.97        60.00         7.99        10.98 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 
       11.01         9.99         5.03         8.98         7.36         6.97 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DY-A0XA 
       27.91         6.97        19.99         5.92         5.00       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 
       41.33        57.24       121.08        24.13        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
        0.49         2.40         7.63         2.17         8.22         0.46 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 
        3.98         0.66         6.90         7.10         6.15         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 
        3.98         2.73         5.23         7.79         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        0.85         2.17         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.76         0.46        47.70        47.08 
TCGA-G5-6641 
       20.91 

      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                          0.16                           0.39 
      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                         38.93                         121.08 
      DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE 
                          2.76                           6.94 
[1] "0.2 - 38.9 (2.8)"  "0.4 - 121.1 (6.9)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK  6(3Q26.31) CNV"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK  6(3Q26.31) CNV"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK  6(3Q26.31) CNV"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK  6(3Q26.31) CNV"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK  6(3Q26.31) CNV"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK  6(3Q26.31) CNV"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK  6(3Q26.31) WILD-TYPE"       "DEL PEAK  6(3Q26.31) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK  6(3Q26.31) CNV" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK  6(3Q26.31) WILD-TYPE" "DEL PEAK  6(3Q26.31) WILD-TYPE" 
[1] "hr=" "13" 
D31V2, continuous
D31V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q26.31) CNV          2   15
  DEL PEAK  6(3Q26.31) WILD-TYPE   72   73
        clus
vv       DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE
  FEMALE                        2                             72
  MALE                         15                             73
D31V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q26.31) CNV         12    4
  DEL PEAK  6(3Q26.31) WILD-TYPE  131    9
                                clus
vv                               DEL PEAK  6(3Q26.31) CNV
  RECTAL ADENOCARCINOMA                                12
  RECTAL MUCINOUS ADENOCARCINOMA                        4
                                clus
vv                               DEL PEAK  6(3Q26.31) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     131
  RECTAL MUCINOUS ADENOCARCINOMA                              9
D31V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3Q26.31) CNV          2   15
  DEL PEAK  6(3Q26.31) WILD-TYPE    4  141
     clus
vv    DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE
  NO                         2                              4
  YES                       15                            141
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK  6(3Q26.31) CNV        10   5   0   1
  DEL PEAK  6(3Q26.31) WILD-TYPE 113  17   2  12
D31V6, multiclass
     clus
vv    DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE
  M0                        10                            113
  M1                         5                             17
  M1A                        0                              2
  MX                         1                             12
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK  6(3Q26.31) CNV        8  3   0   0   1  4   0   1  0
  DEL PEAK  6(3Q26.31) WILD-TYPE 75 32   4   5   0 19   2   6  1
D31V7, multiclass
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK  6(3Q26.31) CNV        11   1   3   1
  DEL PEAK  6(3Q26.31) WILD-TYPE 110   1   9   2
D31V8, multiclass
    clus
vv   DEL PEAK  6(3Q26.31) CNV DEL PEAK  6(3Q26.31) WILD-TYPE
  R0                       11                            110
  R1                        1                              1
  R2                        3                              9
  RX                        1                              2
D31V9, continuous
D31V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  6(3Q26.31) CNV             0        2         6         0         1
  DEL PEAK  6(3Q26.31) WILD-TYPE      30        6        32         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  6(3Q26.31) CNV               0          0          2          0
  DEL PEAK  6(3Q26.31) WILD-TYPE         5          9         21         13
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK  6(3Q26.31) CNV              5         1
  DEL PEAK  6(3Q26.31) WILD-TYPE       12         8
D31V11, multiclass

Clustering(32) Variable = Del Peak  7(4p13)
D32V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  7(4P13) CNV       41  2
  DEL PEAK  7(4P13) WILD-TYPE 78  9
      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                         43                          87 
      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                          2                           9 
$`DEL PEAK  7(4P13) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 
       19.53        11.77        10.62        12.72        17.62        14.50 
TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3731 TCGA-AG-3883 TCGA-AG-3893 
        7.59         7.33         1.02         1.02         1.02         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01L 
        1.02         1.02        13.91        25.94        23.01        12.00 
TCGA-AG-A01W TCGA-AG-A02G TCGA-AG-A02X TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6619 
       70.03        38.93        40.96         0.69        10.19         6.02 
TCGA-CI-6620 TCGA-DC-5869 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
        6.02         5.03         6.97        27.91         6.97        19.99 
TCGA-DY-A0XA TCGA-DY-A1DE TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6511 TCGA-EI-6513 
      119.51       121.08        32.58         2.40         3.98         6.90 
TCGA-EI-6881 TCGA-EI-7002 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6813 
        6.15         2.76         0.85         2.17         0.39         0.69 
TCGA-G5-6641 
       20.91 

$`DEL PEAK  7(4P13) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 
       15.85        13.55        19.10        10.39         8.45         6.35 
TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
       12.00         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        0.99         7.96         0.95         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       20.94         6.02        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
        1.02        12.00        63.98        10.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6644 
        1.94        61.94        38.01         0.49         1.45         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        4.60         1.81         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-6154 
       60.00         7.99        10.98        11.01         9.99         8.98 
TCGA-DC-6155 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DC 
        7.36         5.92         3.98         5.00         0.26        41.33 
TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 
       57.24        24.13        51.48         0.49         7.63         0.16 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6882 
        2.17         8.22         0.46         0.66         7.10         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 
        3.98         2.73         5.23         7.79         2.04         3.39 
TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        1.02         0.66         0.53         1.08         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
       18.25        47.70        47.08 

      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                       0.39                        0.16 
      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                     121.08                       63.98 
      DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE 
                       7.33                        5.00 
[1] "0.4 - 121.1 (7.3)" "0.2 - 64.0 (5.0)" 
                 TCGA-AF-2687                  TCGA-AF-2689 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-4001                  TCGA-AG-4007 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-CI-6620                  TCGA-CI-6622 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6157                  TCGA-DC-6158 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6160                  TCGA-DC-6681 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-F5-6810                  TCGA-F5-6811 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-2687                  TCGA-AF-2689 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-4001                  TCGA-AG-4007 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-CI-6620                  TCGA-CI-6622 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6157                  TCGA-DC-6158 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6160                  TCGA-DC-6681 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-F5-6810                  TCGA-F5-6811 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-2687                  TCGA-AF-2689 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-2692                  TCGA-AF-2693 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AF-3400                  TCGA-AF-3911 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3575                  TCGA-AG-3581 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-4001                  TCGA-AG-4007 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-CI-6620                  TCGA-CI-6622 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6157                  TCGA-DC-6158 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DC-6160                  TCGA-DC-6681 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
      "DEL PEAK  7(4P13) CNV"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-F5-6810                  TCGA-F5-6811 
      "DEL PEAK  7(4P13) CNV" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
"DEL PEAK  7(4P13) WILD-TYPE" "DEL PEAK  7(4P13) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK  7(4P13) WILD-TYPE"       "DEL PEAK  7(4P13) CNV" 
[1] "hr=" "2.5"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4P13) CNV         21   37
  DEL PEAK  7(4P13) WILD-TYPE   53   51
        clus
vv       DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE
  FEMALE                    21                          53
  MALE                      37                          51
D32V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4P13) CNV         53    3
  DEL PEAK  7(4P13) WILD-TYPE   90   10
                                clus
vv                               DEL PEAK  7(4P13) CNV
  RECTAL ADENOCARCINOMA                             53
  RECTAL MUCINOUS ADENOCARCINOMA                     3
                                clus
vv                               DEL PEAK  7(4P13) WILD-TYPE
  RECTAL ADENOCARCINOMA                                   90
  RECTAL MUCINOUS ADENOCARCINOMA                          10
D32V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(4P13) CNV          6   52
  DEL PEAK  7(4P13) WILD-TYPE    0  104
     clus
vv    DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE
  NO                      6                           0
  YES                    52                         104
                             vv
clus                          M0 M1 M1A MX
  DEL PEAK  7(4P13) CNV       43  8   1  5
  DEL PEAK  7(4P13) WILD-TYPE 80 14   1  8
D32V6, multiclass
     clus
vv    DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE
  M0                     43                          80
  M1                      8                          14
  M1A                     1                           1
  MX                      5                           8
                             vv
clus                          N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK  7(4P13) CNV       26 17   1   1   1  8   0   4  0
  DEL PEAK  7(4P13) WILD-TYPE 57 18   3   4   0 15   2   3  1
D32V7, multiclass
                             vv
clus                          R0 R1 R2 RX
  DEL PEAK  7(4P13) CNV       46  0  3  0
  DEL PEAK  7(4P13) WILD-TYPE 75  2  9  3
D32V8, multiclass
    clus
vv   DEL PEAK  7(4P13) CNV DEL PEAK  7(4P13) WILD-TYPE
  R0                    46                          75
  R1                     0                           2
  R2                     3                           9
  RX                     0                           3
D32V9, continuous
D32V10, continuous
                             vv
clus                          STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  7(4P13) CNV             9        1        16         0         0
  DEL PEAK  7(4P13) WILD-TYPE      21        7        22         2         2
                             vv
clus                          STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  7(4P13) CNV               1          3         11          5
  DEL PEAK  7(4P13) WILD-TYPE         4          6         12          8
                             vv
clus                          STAGE IV STAGE IVA
  DEL PEAK  7(4P13) CNV              7         4
  DEL PEAK  7(4P13) WILD-TYPE       10         5
D32V11, multiclass

Clustering(33) Variable = Del Peak  8(4q22.1)
D33V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(4Q22.1) CNV       53  2
  DEL PEAK  8(4Q22.1) WILD-TYPE 66  9
      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                           55                            75 
      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                            2                             9 
$`DEL PEAK  8(4Q22.1) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3883 TCGA-AG-3999 
       17.62        14.50         7.59         1.02         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02X 
       23.01        12.00        70.03        63.98         1.94        40.96 
TCGA-AH-6544 TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6624 
        0.49         0.69        10.19         6.02         6.02         4.70 
TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
       11.01         5.03         6.97        27.91         6.97        19.99 
TCGA-DC-6682 TCGA-DY-A0XA TCGA-DY-A1DE TCGA-EF-5831 TCGA-EI-6508 TCGA-EI-6509 
        3.98       119.51       121.08         2.40         2.17         8.22 
TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 
        3.98         6.90         6.15         2.76         2.04         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-G5-6233 
        2.17         0.39         1.02         0.66         0.69        18.25 
TCGA-G5-6641 
       20.91 

$`DEL PEAK  8(4Q22.1) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 
       15.85        10.39         8.45         6.35         7.33        12.00 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 
        1.02         2.01         1.02         1.02         0.99         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        7.96         0.95         1.02         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-4022 TCGA-AG-A002 
        1.02         0.99         0.99         1.02         0.99        20.94 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N 
       17.03        15.91        13.02         1.02         1.02        12.00 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 
       10.98        51.98        49.94        38.93        61.94        38.01 
TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6622 TCGA-CI-6623 
        1.45         0.72         4.60         1.81         6.94         9.37 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-6154 
       13.97        60.00         7.99        10.98         9.99         8.98 
TCGA-DC-6155 TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DD 
        7.36         5.92         5.00         0.26        41.33        57.24 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 
       24.13        51.48        32.58         0.49         7.63         0.16 
TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
        0.46         0.66         7.10         3.55         3.98         2.73 
TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        5.23         7.79         3.39         0.53         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        0.46        47.70        47.08 

      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                         0.39                          0.16 
      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                       121.08                         61.94 
      DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE 
                         6.90                          5.92 
[1] "0.4 - 121.1 (6.9)" "0.2 - 61.9 (5.9)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-CI-6620                    TCGA-CI-6622 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-CI-6620                    TCGA-CI-6622 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-CI-6620                    TCGA-CI-6622 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
      "DEL PEAK  8(4Q22.1) CNV"       "DEL PEAK  8(4Q22.1) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  8(4Q22.1) WILD-TYPE" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK  8(4Q22.1) CNV" "DEL PEAK  8(4Q22.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  8(4Q22.1) WILD-TYPE"       "DEL PEAK  8(4Q22.1) CNV" 
[1] "hr=" "3.3"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) CNV         28   44
  DEL PEAK  8(4Q22.1) WILD-TYPE   46   44
        clus
vv       DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE
  FEMALE                      28                            46
  MALE                        44                            44
D33V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) CNV         64    4
  DEL PEAK  8(4Q22.1) WILD-TYPE   79    9
                                clus
vv                               DEL PEAK  8(4Q22.1) CNV
  RECTAL ADENOCARCINOMA                               64
  RECTAL MUCINOUS ADENOCARCINOMA                       4
                                clus
vv                               DEL PEAK  8(4Q22.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     79
  RECTAL MUCINOUS ADENOCARCINOMA                             9
D33V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q22.1) CNV          5   67
  DEL PEAK  8(4Q22.1) WILD-TYPE    1   89
     clus
vv    DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE
  NO                        5                             1
  YES                      67                            89
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK  8(4Q22.1) CNV       56  8   1  6
  DEL PEAK  8(4Q22.1) WILD-TYPE 67 14   1  7
D33V6, multiclass
     clus
vv    DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE
  M0                       56                            67
  M1                        8                            14
  M1A                       1                             1
  MX                        6                             7
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK  8(4Q22.1) CNV       35 17   2   1   1 11   0   5  0
  DEL PEAK  8(4Q22.1) WILD-TYPE 48 18   2   4   0 12   2   2  1
D33V7, multiclass
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  8(4Q22.1) CNV       56  1  3  0
  DEL PEAK  8(4Q22.1) WILD-TYPE 65  1  9  3
D33V8, multiclass
    clus
vv   DEL PEAK  8(4Q22.1) CNV DEL PEAK  8(4Q22.1) WILD-TYPE
  R0                      56                            65
  R1                       1                             1
  R2                       3                             9
  RX                       0                             3
D33V9, continuous
D33V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  8(4Q22.1) CNV            11        3        21         0         1
  DEL PEAK  8(4Q22.1) WILD-TYPE      19        5        17         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  8(4Q22.1) CNV               2          2         13          7
  DEL PEAK  8(4Q22.1) WILD-TYPE         3          7         10          6
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK  8(4Q22.1) CNV              5         5
  DEL PEAK  8(4Q22.1) WILD-TYPE       12         4
D33V11, multiclass

Clustering(34) Variable = Del Peak  9(4q35.1)
D34V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(4Q35.1) CNV       50  3
  DEL PEAK  9(4Q35.1) WILD-TYPE 69  8
      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                           53                            77 
      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                            3                             8 
$`DEL PEAK  9(4Q35.1) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3582 TCGA-AG-3587 
       17.62        10.39        14.50         7.59         1.02         1.02 
TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A008 TCGA-AG-A00H 
        0.99         1.02         1.02         1.02        13.91        25.94 
TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A02X TCGA-AH-6544 
       23.01        12.00        70.03        63.98        40.96         0.49 
TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6624 TCGA-DC-4749 
        0.69        10.19         6.02         6.02         4.70        11.01 
TCGA-DC-5869 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DY-A0XA 
        5.03         6.97        27.91         6.97        19.99       119.51 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-EF-5831 TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6513 
      121.08        24.13         2.40         8.22         3.98         6.90 
TCGA-EI-6881 TCGA-EI-7002 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
        6.15         2.76         0.85         2.17         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6641 
        0.66         0.53         0.46        18.25        20.91 

$`DEL PEAK  9(4Q35.1) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 
       15.85         8.45         6.35         7.33        12.00         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        2.01         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C 
        1.02         1.02         1.02         0.99        20.94         6.02 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N 
       17.03        15.91        13.02         1.02         1.02        12.00 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       10.98        51.98        49.94         1.94        38.93        61.94 
TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6622 
       38.01         1.45         0.72         4.60         1.81         6.94 
TCGA-CI-6623 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 
        9.37        13.97        60.00         7.99        10.98         9.99 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
        8.98         7.36         5.92         3.98         5.00         0.26 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EI-6506 
       41.33        57.24        51.48        32.58         0.49         7.63 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6882 
        0.16         2.17         0.46         0.66         7.10         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 
        3.98         2.73         5.23         7.79         2.04         3.39 
TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6235 TCGA-G5-6572 
        0.69         1.08         0.76        47.70        47.08 

      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                         0.39                          0.16 
      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                       121.08                         61.94 
      DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE 
                         7.59                          5.00 
[1] "0.4 - 121.1 (7.6)" "0.2 - 61.9 (5.0)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-CI-6620                    TCGA-CI-6622 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-CI-6620                    TCGA-CI-6622 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-CI-6620                    TCGA-CI-6622 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK  9(4Q35.1) WILD-TYPE" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "DEL PEAK  9(4Q35.1) CNV"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK  9(4Q35.1) CNV" "DEL PEAK  9(4Q35.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK  9(4Q35.1) WILD-TYPE"       "DEL PEAK  9(4Q35.1) CNV" 
[1] "hr=" "2"  
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q35.1) CNV         30   42
  DEL PEAK  9(4Q35.1) WILD-TYPE   44   46
        clus
vv       DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE
  FEMALE                      30                            44
  MALE                        42                            46
D34V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q35.1) CNV         65    3
  DEL PEAK  9(4Q35.1) WILD-TYPE   78   10
                                clus
vv                               DEL PEAK  9(4Q35.1) CNV
  RECTAL ADENOCARCINOMA                               65
  RECTAL MUCINOUS ADENOCARCINOMA                       3
                                clus
vv                               DEL PEAK  9(4Q35.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     78
  RECTAL MUCINOUS ADENOCARCINOMA                            10
D34V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q35.1) CNV          5   67
  DEL PEAK  9(4Q35.1) WILD-TYPE    1   89
     clus
vv    DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE
  NO                        5                             1
  YES                      67                            89
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK  9(4Q35.1) CNV       55  9   1  6
  DEL PEAK  9(4Q35.1) WILD-TYPE 68 13   1  7
D34V6, multiclass
     clus
vv    DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE
  M0                       55                            68
  M1                        9                            13
  M1A                       1                             1
  MX                        6                             7
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK  9(4Q35.1) CNV       35 16   2   1   1 12   1   4  0
  DEL PEAK  9(4Q35.1) WILD-TYPE 48 19   2   4   0 11   1   3  1
D34V7, multiclass
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK  9(4Q35.1) CNV       56  0  3  0
  DEL PEAK  9(4Q35.1) WILD-TYPE 65  2  9  3
D34V8, multiclass
    clus
vv   DEL PEAK  9(4Q35.1) CNV DEL PEAK  9(4Q35.1) WILD-TYPE
  R0                      56                            65
  R1                       0                             2
  R2                       3                             9
  RX                       0                             3
D34V9, continuous
D34V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK  9(4Q35.1) CNV            13        2        20         0         1
  DEL PEAK  9(4Q35.1) WILD-TYPE      17        6        18         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK  9(4Q35.1) CNV               2          2         11          9
  DEL PEAK  9(4Q35.1) WILD-TYPE         3          7         12          4
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK  9(4Q35.1) CNV              5         4
  DEL PEAK  9(4Q35.1) WILD-TYPE       12         5
D34V11, multiclass

Clustering(35) Variable = Del Peak 10(5q11.2)
D35V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(5Q11.2) CNV       33  5
  DEL PEAK 10(5Q11.2) WILD-TYPE 86  6
      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                           38                            92 
      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                            5                             6 
$`DEL PEAK 10(5Q11.2) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-6136 
       19.53        11.77        10.62        17.62        10.39         7.59 
TCGA-AF-6672 TCGA-AG-3731 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A00Y 
        7.33         1.02         1.02         1.02         1.02        23.01 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-BM-6198 
       70.03        63.98         1.94        38.93        40.96        10.19 
TCGA-CI-6620 TCGA-CL-5918 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 
        6.02         7.99         5.03         7.36         6.97        27.91 
TCGA-DC-6158 TCGA-DY-A0XA TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DG TCGA-EI-6506 
        6.97       119.51        57.24       121.08        51.48         7.63 
TCGA-EI-6881 TCGA-EI-6885 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6702 
        6.15         5.23         2.76         2.04         3.39         2.17 
TCGA-F5-6811 TCGA-G5-6641 
        1.02        20.91 

$`DEL PEAK 10(5Q11.2) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-4110 TCGA-AF-5654 
       15.85        13.55        19.10        12.72        14.50         8.45 
TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
        6.35        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 
        1.02         0.99         0.99         7.96         0.95         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         0.99        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       25.94        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N 
       12.00        12.00        10.98        51.98        49.94        61.94 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       38.01         0.49         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        1.81         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6160 
       60.00        10.98        11.01         9.99         8.98        19.99 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DF 
        5.92         3.98         5.00         0.26        41.33        24.13 
TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
       32.58         0.49         2.40         0.16         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 
        0.46         3.98         0.66         6.90         7.10         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6917 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6812 
        3.98         2.73         7.79         0.85         0.39         0.66 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
        0.69         0.53         1.08         0.76         0.46        18.25 
TCGA-G5-6235 TCGA-G5-6572 
       47.70        47.08 

      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                         1.02                          0.16 
      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                       121.08                         61.94 
      DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE 
                         7.61                          4.65 
[1] "1.0 - 121.1 (7.6)" "0.2 - 61.9 (4.7)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "DEL PEAK 10(5Q11.2) CNV" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
      "DEL PEAK 10(5Q11.2) CNV"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 10(5Q11.2) WILD-TYPE" "DEL PEAK 10(5Q11.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 10(5Q11.2) WILD-TYPE"       "DEL PEAK 10(5Q11.2) CNV" 
[1] "hr=" "1.3"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) CNV         26   23
  DEL PEAK 10(5Q11.2) WILD-TYPE   48   65
        clus
vv       DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE
  FEMALE                      26                            48
  MALE                        23                            65
D35V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) CNV         46    2
  DEL PEAK 10(5Q11.2) WILD-TYPE   97   11
                                clus
vv                               DEL PEAK 10(5Q11.2) CNV
  RECTAL ADENOCARCINOMA                               46
  RECTAL MUCINOUS ADENOCARCINOMA                       2
                                clus
vv                               DEL PEAK 10(5Q11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     97
  RECTAL MUCINOUS ADENOCARCINOMA                            11
D35V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(5Q11.2) CNV          5   44
  DEL PEAK 10(5Q11.2) WILD-TYPE    1  112
     clus
vv    DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE
  NO                        5                             1
  YES                      44                           112
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK 10(5Q11.2) CNV       33  9   1  5
  DEL PEAK 10(5Q11.2) WILD-TYPE 90 13   1  8
D35V6, multiclass
     clus
vv    DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE
  M0                       33                            90
  M1                        9                            13
  M1A                       1                             1
  MX                        5                             8
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 10(5Q11.2) CNV       24 10   2   3   0  7   0   3  0
  DEL PEAK 10(5Q11.2) WILD-TYPE 59 25   2   2   1 16   2   4  1
D35V7, multiclass
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 10(5Q11.2) CNV       34  1  3  1
  DEL PEAK 10(5Q11.2) WILD-TYPE 87  1  9  2
D35V8, multiclass
    clus
vv   DEL PEAK 10(5Q11.2) CNV DEL PEAK 10(5Q11.2) WILD-TYPE
  R0                      34                            87
  R1                       1                             1
  R2                       3                             9
  RX                       1                             2
D35V9, continuous
D35V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 10(5Q11.2) CNV             7        3        14         0         0
  DEL PEAK 10(5Q11.2) WILD-TYPE      23        5        24         2         2
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 10(5Q11.2) CNV               1          3          5          3
  DEL PEAK 10(5Q11.2) WILD-TYPE         4          6         18         10
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK 10(5Q11.2) CNV              6         5
  DEL PEAK 10(5Q11.2) WILD-TYPE       11         4
D35V11, multiclass

Clustering(36) Variable = Del Peak 11(5q22.2)
D36V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(5Q22.2) CNV       34  6
  DEL PEAK 11(5Q22.2) WILD-TYPE 85  5
      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                           40                            90 
      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                            6                             5 
$`DEL PEAK 11(5Q22.2) CNV`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-6136 
       19.53        11.77        10.62        17.62        10.39         7.59 
TCGA-AF-6672 TCGA-AG-3731 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A00C 
        7.33         1.02         1.02         1.02         1.02         6.02 
TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02G 
       23.01        12.00        70.03        63.98         1.94        38.93 
TCGA-AG-A02X TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6620 TCGA-CL-5918 TCGA-DC-5869 
       40.96         1.81        10.19         6.02         7.99         5.03 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DY-A0XA 
        7.36         6.97        27.91         6.97         3.98       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6510 
       41.33        57.24        51.48         7.63         0.16         0.46 
TCGA-EI-6513 TCGA-EI-6881 TCGA-F5-6702 TCGA-F5-6864 
        6.90         6.15         2.17         0.46 

$`DEL PEAK 11(5Q22.2) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-4110 TCGA-AF-5654 
       15.85        13.55        19.10        12.72        14.50         8.45 
TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
        6.35        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 
        1.02         0.99         0.99         7.96         0.95         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H 
        1.02         1.02         0.99        20.94        13.91        25.94 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N 
       17.03        15.91        13.02         1.02         1.02        12.00 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 
       10.98        51.98        49.94        61.94        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-CI-6619 TCGA-CI-6622 
        1.45         0.69         0.72         4.60         6.02         6.94 
TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-4749 
        9.37         4.70        13.97        60.00        10.98        11.01 
TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 
        9.99         8.98        19.99         5.92         5.00         0.26 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6508 
      121.08        24.13        32.58         0.49         2.40         2.17 
TCGA-EI-6509 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 
        8.22         3.98         0.66         7.10         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
        2.73         5.23         7.79         2.76         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        0.85         0.39         1.02         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        1.08         0.76        18.25        47.70        47.08        20.91 

      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                         0.16                          0.26 
      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                       119.51                        121.08 
      DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE 
                        7.475                         4.650 
[1] "0.2 - 119.5 (7.5)" "0.3 - 121.1 (4.7)"
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
      "DEL PEAK 11(5Q22.2) CNV"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
      "DEL PEAK 11(5Q22.2) CNV" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 11(5Q22.2) WILD-TYPE"       "DEL PEAK 11(5Q22.2) CNV" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 11(5Q22.2) WILD-TYPE" "DEL PEAK 11(5Q22.2) WILD-TYPE" 
[1] "hr=" "1.4"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q22.2) CNV         28   27
  DEL PEAK 11(5Q22.2) WILD-TYPE   46   61
        clus
vv       DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE
  FEMALE                      28                            46
  MALE                        27                            61
D36V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q22.2) CNV         52    2
  DEL PEAK 11(5Q22.2) WILD-TYPE   91   11
                                clus
vv                               DEL PEAK 11(5Q22.2) CNV
  RECTAL ADENOCARCINOMA                               52
  RECTAL MUCINOUS ADENOCARCINOMA                       2
                                clus
vv                               DEL PEAK 11(5Q22.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     91
  RECTAL MUCINOUS ADENOCARCINOMA                            11
D36V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q22.2) CNV          5   50
  DEL PEAK 11(5Q22.2) WILD-TYPE    1  106
     clus
vv    DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE
  NO                        5                             1
  YES                      50                           106
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK 11(5Q22.2) CNV       41  7   1  5
  DEL PEAK 11(5Q22.2) WILD-TYPE 82 15   1  8
D36V6, multiclass
     clus
vv    DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE
  M0                       41                            82
  M1                        7                            15
  M1A                       1                             1
  MX                        5                             8
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 11(5Q22.2) CNV       26 14   2   3   0  7   1   2  0
  DEL PEAK 11(5Q22.2) WILD-TYPE 57 21   2   2   1 16   1   5  1
D36V7, multiclass
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 11(5Q22.2) CNV       40  1  4  1
  DEL PEAK 11(5Q22.2) WILD-TYPE 81  1  8  2
D36V8, multiclass
    clus
vv   DEL PEAK 11(5Q22.2) CNV DEL PEAK 11(5Q22.2) WILD-TYPE
  R0                      40                            81
  R1                       1                             1
  R2                       4                             8
  RX                       1                             2
D36V9, continuous
D36V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 11(5Q22.2) CNV             7        3        15         0         0
  DEL PEAK 11(5Q22.2) WILD-TYPE      23        5        23         2         2
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 11(5Q22.2) CNV               1          2         11          5
  DEL PEAK 11(5Q22.2) WILD-TYPE         4          7         12          8
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK 11(5Q22.2) CNV              4         5
  DEL PEAK 11(5Q22.2) WILD-TYPE       13         4
D36V11, multiclass

Clustering(37) Variable = Del Peak 12(6p25.3)
D37V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 12(6P25.3) CNV        14   1
  DEL PEAK 12(6P25.3) WILD-TYPE 105  10
      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                           15                           115 
      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                            1                            10 
$`DEL PEAK 12(6P25.3) CNV`
TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-4110 TCGA-AG-4001 
       11.77        13.55        19.10        12.72        14.50         1.02 
TCGA-AG-A008 TCGA-AG-A011 TCGA-BM-6198 TCGA-DC-4745 TCGA-DC-6682 TCGA-DT-5265 
       13.91        17.03        10.19        10.98         3.98         0.26 
TCGA-DY-A1DF TCGA-EI-6511 TCGA-EI-6883 
       24.13         3.98         3.98 

$`DEL PEAK 12(6P25.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 
       19.53        15.85        10.62        17.62        10.39         8.45 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 
        7.59         6.35         7.33        12.00         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 
        2.01         1.02         1.02         0.99         0.99         7.96 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 
        0.95         1.02         0.99         0.99         1.02         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         0.99        20.94         6.02        25.94        23.01 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       15.91        13.02         1.02         1.02        12.00        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       70.03        63.98        10.98        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 
       38.93        61.94        40.96        38.01         0.49         1.45 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 
        0.69         0.72         4.60         1.81         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.94         9.37         4.70        13.97        60.00         7.99 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 
       11.01         9.99         5.03         8.98         7.36         6.97 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DY-A0XA 
       27.91         6.97        19.99         5.92         5.00       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
       41.33        57.24       121.08        51.48        32.58         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 
        2.40         7.63         0.16         2.17         8.22         0.46 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6884 
        0.66         6.90         7.10         6.15         3.55         2.73 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
        5.23         7.79         2.76         2.04         3.39         0.85 
TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        2.17         0.39         1.02         0.66         0.69         0.53 
TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        1.08         0.76         0.46        18.25        47.70        47.08 
TCGA-G5-6641 
       20.91 

      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                         0.26                          0.16 
      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                        24.13                        121.08 
      DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE 
                        11.77                          6.02 
[1] "0.3 - 24.1 (11.8)" "0.2 - 121.1 (6.0)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK 12(6P25.3) CNV"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK 12(6P25.3) CNV"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK 12(6P25.3) CNV"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
      "DEL PEAK 12(6P25.3) CNV" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 12(6P25.3) WILD-TYPE"       "DEL PEAK 12(6P25.3) CNV" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 12(6P25.3) WILD-TYPE" "DEL PEAK 12(6P25.3) WILD-TYPE" 
[1] "hr=" "2.6"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) CNV         10   14
  DEL PEAK 12(6P25.3) WILD-TYPE   64   74
        clus
vv       DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE
  FEMALE                      10                            64
  MALE                        14                            74
D37V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) CNV         18    3
  DEL PEAK 12(6P25.3) WILD-TYPE  125   10
                                clus
vv                               DEL PEAK 12(6P25.3) CNV
  RECTAL ADENOCARCINOMA                               18
  RECTAL MUCINOUS ADENOCARCINOMA                       3
                                clus
vv                               DEL PEAK 12(6P25.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    125
  RECTAL MUCINOUS ADENOCARCINOMA                            10
D37V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(6P25.3) CNV          2   22
  DEL PEAK 12(6P25.3) WILD-TYPE    4  134
     clus
vv    DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE
  NO                        2                             4
  YES                      22                           134
                               vv
clus                             M0  M1 M1A  MX
  DEL PEAK 12(6P25.3) CNV        18   2   0   3
  DEL PEAK 12(6P25.3) WILD-TYPE 105  20   2  10
D37V6, multiclass
     clus
vv    DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE
  M0                       18                           105
  M1                        2                            20
  M1A                       0                             2
  MX                        3                            10
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 12(6P25.3) CNV       15  3   1   0   0  4   0   1  0
  DEL PEAK 12(6P25.3) WILD-TYPE 68 32   3   5   1 19   2   6  1
D37V7, multiclass
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 12(6P25.3) CNV        18   0   2   1
  DEL PEAK 12(6P25.3) WILD-TYPE 103   2  10   2
D37V8, multiclass
    clus
vv   DEL PEAK 12(6P25.3) CNV DEL PEAK 12(6P25.3) WILD-TYPE
  R0                      18                           103
  R1                       0                             2
  R2                       2                            10
  RX                       1                             2
D37V9, continuous
D37V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 12(6P25.3) CNV             2        1        11         0         1
  DEL PEAK 12(6P25.3) WILD-TYPE      28        7        27         2         1
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 12(6P25.3) CNV               1          0          3          1
  DEL PEAK 12(6P25.3) WILD-TYPE         4          9         20         12
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK 12(6P25.3) CNV              2         1
  DEL PEAK 12(6P25.3) WILD-TYPE       15         8
D37V11, multiclass

Clustering(38) Variable = Del Peak 13(6q26)
D38V1, survival
                             sevent
clus2                           0   1
  DEL PEAK 13(6Q26) CNV        18   1
  DEL PEAK 13(6Q26) WILD-TYPE 101  10
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                         19                         111 
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                          1                          10 
$`DEL PEAK 13(6Q26) CNV`
TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 
       11.77        10.62        13.55        19.10        12.72        17.62 
TCGA-AG-3575 TCGA-AG-3587 TCGA-AG-4007 TCGA-AG-A008 TCGA-AG-A011 TCGA-AH-6544 
       12.00         1.02         1.02        13.91        17.03         0.49 
TCGA-AH-6644 TCGA-CI-6623 TCGA-DC-6682 TCGA-DT-5265 TCGA-F5-6863 TCGA-G5-6233 
        0.72         9.37         3.98         0.26         0.76        18.25 
TCGA-G5-6641 
       20.91 

$`DEL PEAK 13(6Q26) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       19.53        15.85        10.39        14.50         8.45         7.59 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
        6.35         7.33         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        0.99         0.99         7.96         0.95         1.02         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        1.02         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        25.94        23.01        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02        12.00        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       51.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
       38.01         1.45         0.69         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.02         6.94         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01         9.99         5.03         8.98 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
        7.36         6.97        27.91         6.97        19.99         5.92 
TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF 
        5.00       119.51        41.33        57.24       121.08        24.13 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 
       51.48        32.58         0.49         2.40         7.63         0.16 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
        2.17         8.22         0.46         3.98         0.66         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        7.10         6.15         3.55         3.98         2.73         5.23 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
        7.79         2.76         2.04         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.39         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6864 TCGA-G5-6235 TCGA-G5-6572 
        0.46        47.70        47.08 

      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                       0.26                        0.16 
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                      20.91                      121.08 
      DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE 
                      11.77                        6.02 
[1] "0.3 - 20.9 (11.8)" "0.2 - 121.1 (6.0)"
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-2692                  TCGA-AF-2693 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-3400                  TCGA-AF-3911 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4001                  TCGA-AG-4007 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-2692                  TCGA-AF-2693 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-3400                  TCGA-AF-3911 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4001                  TCGA-AG-4007 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-2687                  TCGA-AF-2689 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-2690                  TCGA-AF-2691 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-2692                  TCGA-AF-2693 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-3400                  TCGA-AF-3911 
      "DEL PEAK 13(6Q26) CNV"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AF-3913                  TCGA-AF-4110 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-5654                  TCGA-AF-6136 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AF-6655                  TCGA-AF-6672 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3575                  TCGA-AG-3581 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3582                  TCGA-AG-3583 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3586                  TCGA-AG-3587 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-3599                  TCGA-AG-3605 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3726                  TCGA-AG-3727 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3731                  TCGA-AG-3742 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3878                  TCGA-AG-3883 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3887                  TCGA-AG-3892 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3893                  TCGA-AG-3894 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-3896                  TCGA-AG-3999 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-4001                  TCGA-AG-4007 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-4008                  TCGA-AG-4022 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A002                  TCGA-AG-A008 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-A00C                  TCGA-AG-A00H 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A00Y                  TCGA-AG-A011 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AG-A014                  TCGA-AG-A015 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A016                  TCGA-AG-A01J 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01L                  TCGA-AG-A01N 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A01W                  TCGA-AG-A01Y 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A020                  TCGA-AG-A023 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A025                  TCGA-AG-A026 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02G                  TCGA-AG-A02N 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AG-A02X                  TCGA-AG-A032 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6544                  TCGA-AH-6547 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-AH-6643                  TCGA-AH-6644 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
                 TCGA-AH-6897                  TCGA-AH-6903 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-BM-6198                  TCGA-CI-6619 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6620                  TCGA-CI-6622 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CI-6623                  TCGA-CI-6624 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-4957                  TCGA-CL-5917 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-CL-5918                  TCGA-DC-4745 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-4749                  TCGA-DC-5337 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-5869                  TCGA-DC-6154 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6155                  TCGA-DC-6156 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6157                  TCGA-DC-6158 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6160                  TCGA-DC-6681 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DC-6682                  TCGA-DC-6683 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DT-5265                  TCGA-DY-A0XA 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DC                  TCGA-DY-A1DD 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DE                  TCGA-DY-A1DF 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-DY-A1DG                  TCGA-DY-A1H8 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EF-5830                  TCGA-EF-5831 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6506                  TCGA-EI-6507 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6508                  TCGA-EI-6509 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6510                  TCGA-EI-6511 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6512                  TCGA-EI-6513 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6514                  TCGA-EI-6881 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6882                  TCGA-EI-6883 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6884                  TCGA-EI-6885 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-6917                  TCGA-EI-7002 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-EI-7004                  TCGA-F5-6465 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6571                  TCGA-F5-6702 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6810                  TCGA-F5-6811 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6812                  TCGA-F5-6813 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6814                  TCGA-F5-6861 
"DEL PEAK 13(6Q26) WILD-TYPE" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-F5-6863                  TCGA-F5-6864 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6233                  TCGA-G5-6235 
      "DEL PEAK 13(6Q26) CNV" "DEL PEAK 13(6Q26) WILD-TYPE" 
                 TCGA-G5-6572                  TCGA-G5-6641 
"DEL PEAK 13(6Q26) WILD-TYPE"       "DEL PEAK 13(6Q26) CNV" 
[1] "hr=" "2.6"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) CNV         10   20
  DEL PEAK 13(6Q26) WILD-TYPE   64   68
        clus
vv       DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  FEMALE                    10                          64
  MALE                      20                          68
D38V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) CNV         22    6
  DEL PEAK 13(6Q26) WILD-TYPE  121    7
                                clus
vv                               DEL PEAK 13(6Q26) CNV
  RECTAL ADENOCARCINOMA                             22
  RECTAL MUCINOUS ADENOCARCINOMA                     6
                                clus
vv                               DEL PEAK 13(6Q26) WILD-TYPE
  RECTAL ADENOCARCINOMA                                  121
  RECTAL MUCINOUS ADENOCARCINOMA                           7
D38V5, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 13(6Q26) CNV          2   28
  DEL PEAK 13(6Q26) WILD-TYPE    4  128
     clus
vv    DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  NO                      2                           4
  YES                    28                         128
                             vv
clus                           M0  M1 M1A  MX
  DEL PEAK 13(6Q26) CNV        22   4   0   4
  DEL PEAK 13(6Q26) WILD-TYPE 101  18   2   9
D38V6, multiclass
     clus
vv    DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  M0                     22                         101
  M1                      4                          18
  M1A                     0                           2
  MX                      4                           9
                             vv
clus                          N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 13(6Q26) CNV       16  4   0   0   0  9   0   0  1
  DEL PEAK 13(6Q26) WILD-TYPE 67 31   4   5   1 14   2   7  0
D38V7, multiclass
                             vv
clus                           R0  R1  R2  RX
  DEL PEAK 13(6Q26) CNV        21   0   3   1
  DEL PEAK 13(6Q26) WILD-TYPE 100   2   9   2
D38V8, multiclass
    clus
vv   DEL PEAK 13(6Q26) CNV DEL PEAK 13(6Q26) WILD-TYPE
  R0                    21                         100
  R1                     0                           2
  R2                     3                           9
  RX                     1                           2
D38V9, continuous
D38V10, continuous
                             vv
clus                          STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 13(6Q26) CNV             5        2         9         0         1
  DEL PEAK 13(6Q26) WILD-TYPE      25        6        29         2         1
                             vv
clus                          STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 13(6Q26) CNV               0          1          2          4
  DEL PEAK 13(6Q26) WILD-TYPE         5          8         21          9
                             vv
clus                          STAGE IV STAGE IVA
  DEL PEAK 13(6Q26) CNV              3         0
  DEL PEAK 13(6Q26) WILD-TYPE       14         9
D38V11, multiclass

Clustering(39) Variable = Del Peak 14(7q31.1)
D39V1, survival
                               sevent
clus2                             0   1
  DEL PEAK 14(7Q31.1) CNV         2   0
  DEL PEAK 14(7Q31.1) WILD-TYPE 117  11
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                           128 
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                            0                            11 
$`DEL PEAK 14(7Q31.1) CNV`
TCGA-AG-A008 TCGA-DC-6682 
       13.91         3.98 

$`DEL PEAK 14(7Q31.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        17.62        10.39        14.50         8.45         7.59 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
        6.35         7.33        12.00         1.02         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.99         0.99         1.02         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         0.99        20.94         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       17.03        15.91        13.02         1.02         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       12.00        70.03        63.98        10.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
        1.94        38.93        61.94        40.96        38.01         0.49 
TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 
        1.45         0.69         0.72         4.60         1.81        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01         9.99         5.03 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
        8.98         7.36         6.97        27.91         6.97        19.99 
TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
        5.92         5.00         0.26       119.51        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
      121.08        24.13        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        7.63         0.16         2.17         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        0.66         6.90         7.10         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
        2.73         5.23         7.79         2.76         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        0.85         2.17         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        0.53         1.08         0.76         0.46        18.25        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                         3.98                          0.16 
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                        13.91                        121.08 
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                        8.945                         6.250 
[1] "4.0 - 13.9 (8.9)"  "0.2 - 121.1 (6.2)"
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 14(7Q31.1) WILD-TYPE"       "DEL PEAK 14(7Q31.1) CNV" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK 14(7Q31.1) CNV" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 14(7Q31.1) WILD-TYPE"       "DEL PEAK 14(7Q31.1) CNV" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK 14(7Q31.1) CNV" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
"DEL PEAK 14(7Q31.1) WILD-TYPE"       "DEL PEAK 14(7Q31.1) CNV" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A020                    TCGA-AG-A023 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-4957                    TCGA-CL-5917 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4749                    TCGA-DC-5337 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6157                    TCGA-DC-6158 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK 14(7Q31.1) CNV" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
[1] "Remove cluster labels:"  "DEL PEAK 14(7Q31.1) CNV"
clus
      DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE 
                            2                           128 
                   TCGA-AF-2687                    TCGA-AF-2689 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2690                    TCGA-AF-2691 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-2692                    TCGA-AF-2693 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3400                    TCGA-AF-3911 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-3913                    TCGA-AF-4110 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AF-6655                    TCGA-AF-6672 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3726                    TCGA-AG-3727 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4001                    TCGA-AG-4007 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-4008                    TCGA-AG-4022 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A00C 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A00H                    TCGA-AG-A00Y 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A011                    TCGA-AG-A014 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A015                    TCGA-AG-A016 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01J                    TCGA-AG-A01L 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01N                    TCGA-AG-A01W 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A01Y                    TCGA-AG-A020 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A023                    TCGA-AG-A025 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A026                    TCGA-AG-A02G 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A02N                    TCGA-AG-A02X 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AG-A032                    TCGA-AH-6544 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6547                    TCGA-AH-6643 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6644                    TCGA-AH-6897 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-AH-6903                    TCGA-BM-6198 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6619                    TCGA-CI-6620 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6622                    TCGA-CI-6623 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CI-6624                    TCGA-CL-4957 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-CL-5917                    TCGA-CL-5918 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-4745                    TCGA-DC-4749 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-5337                    TCGA-DC-5869 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6154                    TCGA-DC-6155 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6156                    TCGA-DC-6157 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6158                    TCGA-DC-6160 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DC-6681                    TCGA-DC-6683 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6884                    TCGA-EI-6885 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-EI-7004                    TCGA-F5-6465 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6810                    TCGA-F5-6811 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6233                    TCGA-G5-6235 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 14(7Q31.1) WILD-TYPE" "DEL PEAK 14(7Q31.1) WILD-TYPE" 
D39V2, continuous
D39V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) CNV          2    2
  DEL PEAK 14(7Q31.1) WILD-TYPE   72   86
        clus
vv       DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE
  FEMALE                       2                            72
  MALE                         2                            86
D39V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) CNV          3    1
  DEL PEAK 14(7Q31.1) WILD-TYPE  140   12
                                clus
vv                               DEL PEAK 14(7Q31.1) CNV
  RECTAL ADENOCARCINOMA                                3
  RECTAL MUCINOUS ADENOCARCINOMA                       1
                                clus
vv                               DEL PEAK 14(7Q31.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    140
  RECTAL MUCINOUS ADENOCARCINOMA                            12
D39V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(7Q31.1) CNV          0    4
  DEL PEAK 14(7Q31.1) WILD-TYPE    6  152
     clus
vv    DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE
  NO                        0                             6
  YES                       4                           152
                               vv
clus                             M0  M1 M1A  MX
  DEL PEAK 14(7Q31.1) CNV         4   0   0   0
  DEL PEAK 14(7Q31.1) WILD-TYPE 119  22   2  13
D39V6, multiclass
     clus
vv    DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE
  M0                        4                           119
  M1                        0                            22
  M1A                       0                             2
  MX                        0                            13
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 14(7Q31.1) CNV        3  0   0   0   0  1   0   0  0
  DEL PEAK 14(7Q31.1) WILD-TYPE 80 35   4   5   1 22   2   7  1
D39V7, multiclass
                               vv
clus                             R0  R1  R2  RX
  DEL PEAK 14(7Q31.1) CNV         4   0   0   0
  DEL PEAK 14(7Q31.1) WILD-TYPE 117   2  12   3
D39V8, multiclass
    clus
vv   DEL PEAK 14(7Q31.1) CNV DEL PEAK 14(7Q31.1) WILD-TYPE
  R0                       4                           117
  R1                       0                             2
  R2                       0                            12
  RX                       0                             3
D39V9, continuous
D39V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 14(7Q31.1) CNV             1        0         2         0         0
  DEL PEAK 14(7Q31.1) WILD-TYPE      29        8        36         2         2
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 14(7Q31.1) CNV               0          0          0          1
  DEL PEAK 14(7Q31.1) WILD-TYPE         5          9         23         12
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK 14(7Q31.1) CNV              0         0
  DEL PEAK 14(7Q31.1) WILD-TYPE       17         9
D39V11, multiclass

Clustering(40) Variable = Del Peak 15(8p23.2)
D40V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 15(8P23.2) CNV       72  7
  DEL PEAK 15(8P23.2) WILD-TYPE 47  4
      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                           79                            51 
      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                            7                             4 
$`DEL PEAK 15(8P23.2) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       12.72        17.62        10.39         7.59         6.35         7.33 
TCGA-AG-3582 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         1.02         0.99         7.96         0.95 
TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 
        0.99         1.02         0.99         1.02         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 
        1.02         1.02        20.94        25.94        23.01        15.91 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
        1.02         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AH-6547 
       10.98        51.98         1.94        38.93        40.96         1.45 
TCGA-AH-6644 TCGA-BM-6198 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-DC-4745 
        0.72        10.19         4.70        13.97        60.00        10.98 
TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
       11.01         5.03         7.36         6.97        27.91         6.97 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
        3.98         5.00         0.26       119.51        41.33        57.24 
TCGA-DY-A1DE TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6883 
      121.08         0.49         2.40         3.98         6.90         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6571 TCGA-F5-6702 
        2.73         5.23         2.76         2.04         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
        0.39         0.66         0.69         0.76         0.46        18.25 
TCGA-G5-6641 
       20.91 

$`DEL PEAK 15(8P23.2) WILD-TYPE`
TCGA-AF-4110 TCGA-AF-5654 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3599 
       14.50         8.45        12.00         1.02         2.01         0.99 
TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4022 
        1.02         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A025 TCGA-AG-A02N 
       13.91         6.02        17.03        13.02        49.94        61.94 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 
       38.01         0.49         0.69         4.60         1.81         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5918 TCGA-DC-5337 TCGA-DC-6154 
        6.02         6.94         9.37         7.99         9.99         8.98 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EI-6506 
       19.99         5.92        24.13        51.48        32.58         7.63 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6514 
        0.16         2.17         8.22         0.46         0.66         7.10 
TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6811 TCGA-F5-6814 
        6.15         3.55         7.79         3.39         1.02         0.53 
TCGA-F5-6861 TCGA-G5-6235 TCGA-G5-6572 
        1.08        47.70        47.08 

      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                         0.26                          0.16 
      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                       121.08                         61.94 
      DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE 
                         6.90                          6.02 
[1] "0.3 - 121.1 (6.9)" "0.2 - 61.9 (6.0)" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3726                    TCGA-AG-3727 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6884                    TCGA-EI-6885 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3726                    TCGA-AG-3727 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6884                    TCGA-EI-6885 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2687                    TCGA-AF-2689 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2690                    TCGA-AF-2691 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-2692                    TCGA-AF-2693 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-3400                    TCGA-AF-3911 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-3913                    TCGA-AF-4110 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AF-5654                    TCGA-AF-6136 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AF-6655                    TCGA-AF-6672 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3575                    TCGA-AG-3581 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3582                    TCGA-AG-3583 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3586                    TCGA-AG-3587 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3599                    TCGA-AG-3605 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3726                    TCGA-AG-3727 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3731                    TCGA-AG-3742 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3878                    TCGA-AG-3883 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-3887                    TCGA-AG-3892 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3893                    TCGA-AG-3894 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-3896                    TCGA-AG-3999 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-4001                    TCGA-AG-4007 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-4008                    TCGA-AG-4022 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A002                    TCGA-AG-A008 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A00C                    TCGA-AG-A00H 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A00Y                    TCGA-AG-A011 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A014                    TCGA-AG-A015 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A016                    TCGA-AG-A01J 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01L                    TCGA-AG-A01N 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A01W                    TCGA-AG-A01Y 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A020                    TCGA-AG-A023 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A025                    TCGA-AG-A026 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AG-A02G                    TCGA-AG-A02N 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AG-A02X                    TCGA-AG-A032 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-AH-6544                    TCGA-AH-6547 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AH-6643                    TCGA-AH-6644 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-AH-6897                    TCGA-AH-6903 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-BM-6198                    TCGA-CI-6619 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6620                    TCGA-CI-6622 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-CI-6623                    TCGA-CI-6624 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-CL-4957                    TCGA-CL-5917 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-CL-5918                    TCGA-DC-4745 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-4749                    TCGA-DC-5337 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-5869                    TCGA-DC-6154 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6155                    TCGA-DC-6156 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6157                    TCGA-DC-6158 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DC-6160                    TCGA-DC-6681 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DC-6682                    TCGA-DC-6683 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DT-5265                    TCGA-DY-A0XA 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A1DC                    TCGA-DY-A1DD 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-DY-A1DE                    TCGA-DY-A1DF 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-DY-A1DG                    TCGA-DY-A1H8 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EF-5830                    TCGA-EF-5831 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6506                    TCGA-EI-6507 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6508                    TCGA-EI-6509 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6510                    TCGA-EI-6511 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6512                    TCGA-EI-6513 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6514                    TCGA-EI-6881 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-EI-6882                    TCGA-EI-6883 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6884                    TCGA-EI-6885 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-6917                    TCGA-EI-7002 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-EI-7004                    TCGA-F5-6465 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6571                    TCGA-F5-6702 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6810                    TCGA-F5-6811 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6812                    TCGA-F5-6813 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-F5-6814                    TCGA-F5-6861 
"DEL PEAK 15(8P23.2) WILD-TYPE" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-F5-6863                    TCGA-F5-6864 
      "DEL PEAK 15(8P23.2) CNV"       "DEL PEAK 15(8P23.2) CNV" 
                   TCGA-G5-6233                    TCGA-G5-6235 
      "DEL PEAK 15(8P23.2) CNV" "DEL PEAK 15(8P23.2) WILD-TYPE" 
                   TCGA-G5-6572                    TCGA-G5-6641 
"DEL PEAK 15(8P23.2) WILD-TYPE"       "DEL PEAK 15(8P23.2) CNV" 
[1] "hr=" "1.3"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P23.2) CNV         45   55
  DEL PEAK 15(8P23.2) WILD-TYPE   29   33
        clus
vv       DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE
  FEMALE                      45                            29
  MALE                        55                            33
D40V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P23.2) CNV         89    7
  DEL PEAK 15(8P23.2) WILD-TYPE   54    6
                                clus
vv                               DEL PEAK 15(8P23.2) CNV
  RECTAL ADENOCARCINOMA                               89
  RECTAL MUCINOUS ADENOCARCINOMA                       7
                                clus
vv                               DEL PEAK 15(8P23.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     54
  RECTAL MUCINOUS ADENOCARCINOMA                             6
D40V5, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(8P23.2) CNV          6   94
  DEL PEAK 15(8P23.2) WILD-TYPE    0   62
     clus
vv    DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE
  NO                        6                             0
  YES                      94                            62
                               vv
clus                            M0 M1 M1A MX
  DEL PEAK 15(8P23.2) CNV       74 15   1  9
  DEL PEAK 15(8P23.2) WILD-TYPE 49  7   1  4
D40V6, multiclass
     clus
vv    DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE
  M0                       74                            49
  M1                       15                             7
  M1A                       1                             1
  MX                        9                             4
                               vv
clus                            N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 15(8P23.2) CNV       48 22   3   4   0 18   1   3  1
  DEL PEAK 15(8P23.2) WILD-TYPE 35 13   1   1   1  5   1   4  0
D40V7, multiclass
                               vv
clus                            R0 R1 R2 RX
  DEL PEAK 15(8P23.2) CNV       73  1 10  2
  DEL PEAK 15(8P23.2) WILD-TYPE 48  1  2  1
D40V8, multiclass
    clus
vv   DEL PEAK 15(8P23.2) CNV DEL PEAK 15(8P23.2) WILD-TYPE
  R0                      73                            48
  R1                       1                             1
  R2                      10                             2
  RX                       2                             1
D40V9, continuous
D40V10, continuous
                               vv
clus                            STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 15(8P23.2) CNV            16        4        24         1         2
  DEL PEAK 15(8P23.2) WILD-TYPE      14        4        14         1         0
                               vv
clus                            STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 15(8P23.2) CNV               4          5         15          8
  DEL PEAK 15(8P23.2) WILD-TYPE         1          4          8          5
                               vv
clus                            STAGE IV STAGE IVA
  DEL PEAK 15(8P23.2) CNV             14         3
  DEL PEAK 15(8P23.2) WILD-TYPE        3         6
D40V11, multiclass

Clustering(41) Variable = Del Peak 16(8p11.21)
D41V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 16(8P11.21) CNV        15   2
  DEL PEAK 16(8P11.21) WILD-TYPE 104   9
      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                            17                            113 
      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                             2                              9 
$`DEL PEAK 16(8P11.21) CNV`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3582 TCGA-AG-3726 TCGA-AG-3742 
       15.85        13.55        12.72         1.02         7.96         0.99 
TCGA-AG-4008 TCGA-AG-A011 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A02G TCGA-BM-6198 
        1.02        17.03        12.00        70.03        38.93        10.19 
TCGA-DC-5869 TCGA-DC-6156 TCGA-DY-A1DG TCGA-EI-7002 TCGA-F5-6810 
        5.03         6.97        51.48         2.76         0.39 

$`DEL PEAK 16(8P11.21) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 TCGA-AF-3913 
       19.53        11.77        10.62        19.10        17.62        10.39 
TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 
       14.50         8.45         7.59         6.35         7.33        12.00 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 
        1.02         2.01         1.02         1.02         0.99         0.99 
TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 
        0.95         1.02         0.99         1.02         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        0.99        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y 
       15.91        13.02         1.02         1.02        12.00        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X 
       10.98        51.98        49.94         1.94        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       38.01         0.49         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
        1.81         6.02         6.02         6.94         9.37         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01         9.99 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
        8.98         7.36        27.91         6.97        19.99         5.92 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
        3.98         5.00         0.26       119.51        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
      121.08        24.13        32.58         0.49         2.40         7.63 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
        0.16         2.17         8.22         0.46         3.98         0.66 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
        6.90         7.10         6.15         3.55         3.98         2.73 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
        5.23         7.79         2.04         3.39         0.85         2.17 
TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        1.02         0.66         0.69         0.53         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.70        47.08        20.91 

      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                          0.39                           0.16 
      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                         70.03                         121.08 
      DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE 
                         10.19                           6.02 
[1] "0.4 - 70.0 (10.2)" "0.2 - 121.1 (6.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 16(8P11.21) WILD-TYPE"       "DEL PEAK 16(8P11.21) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 16(8P11.21) CNV" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 16(8P11.21) WILD-TYPE" "DEL PEAK 16(8P11.21) WILD-TYPE" 
[1] "hr=" "1.2"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) CNV          9   15
  DEL PEAK 16(8P11.21) WILD-TYPE   65   73
        clus
vv       DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE
  FEMALE                        9                             65
  MALE                         15                             73
D41V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) CNV         20    2
  DEL PEAK 16(8P11.21) WILD-TYPE  123   11
                                clus
vv                               DEL PEAK 16(8P11.21) CNV
  RECTAL ADENOCARCINOMA                                20
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               DEL PEAK 16(8P11.21) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     123
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D41V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(8P11.21) CNV          2   22
  DEL PEAK 16(8P11.21) WILD-TYPE    4  134
     clus
vv    DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE
  NO                         2                              4
  YES                       22                            134
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 16(8P11.21) CNV        15   6   1   1
  DEL PEAK 16(8P11.21) WILD-TYPE 108  16   1  12
D41V6, multiclass
     clus
vv    DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE
  M0                        15                            108
  M1                         6                             16
  M1A                        1                              1
  MX                         1                             12
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 16(8P11.21) CNV       12  7   1   0   0  3   0   1  0
  DEL PEAK 16(8P11.21) WILD-TYPE 71 28   3   5   1 20   2   6  1
D41V7, multiclass
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 16(8P11.21) CNV        18   0   3   0
  DEL PEAK 16(8P11.21) WILD-TYPE 103   2   9   3
D41V8, multiclass
    clus
vv   DEL PEAK 16(8P11.21) CNV DEL PEAK 16(8P11.21) WILD-TYPE
  R0                       18                            103
  R1                        0                              2
  R2                        3                              9
  RX                        0                              3
D41V9, continuous
D41V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 16(8P11.21) CNV             3        1         8         0         0
  DEL PEAK 16(8P11.21) WILD-TYPE      27        7        30         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 16(8P11.21) CNV               1          0          4          0
  DEL PEAK 16(8P11.21) WILD-TYPE         4          9         19         13
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 16(8P11.21) CNV              5         2
  DEL PEAK 16(8P11.21) WILD-TYPE       12         7
D41V11, multiclass

Clustering(42) Variable = Del Peak 17(10q21.1)
D42V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(10Q21.1) CNV       29  1
  DEL PEAK 17(10Q21.1) WILD-TYPE 90 10
      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                            30                            100 
      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                             1                             10 
$`DEL PEAK 17(10Q21.1) CNV`
TCGA-AF-2687 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3587 
       19.53        13.55        12.72         7.59         7.33         1.02 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         0.92        13.91         6.02        25.94        23.01 
TCGA-AG-A01L TCGA-AG-A026 TCGA-AG-A02X TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 
       12.00         1.94        40.96         6.94         4.70        13.97 
TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DE 
        7.36        27.91         6.97         3.98         5.00       121.08 
TCGA-EI-6509 TCGA-EI-6514 TCGA-EI-6881 TCGA-F5-6702 TCGA-F5-6864 TCGA-G5-6641 
        8.22         7.10         6.15         2.17         0.46        20.91 

$`DEL PEAK 17(10Q21.1) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 TCGA-AF-3913 
       15.85        11.77        10.62        19.10        17.62        10.39 
TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 
       14.50         8.45         6.35        12.00         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        2.01         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       20.94        17.03        15.91        13.02         1.02         1.02 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       12.00        70.03        63.98        10.98        51.98        49.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 
       38.93        61.94        38.01         0.49         1.45         0.69 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
        0.72         4.60         1.81        10.19         6.02         6.02 
TCGA-CI-6623 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
        9.37        60.00         7.99        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 
        5.03         8.98         6.97        19.99         5.92         0.26 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 
      119.51        41.33        57.24        24.13        51.48        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 
        0.49         2.40         7.63         0.16         2.17         0.46 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 
        3.98         0.66         6.90         3.55         3.98         2.73 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 
        5.23         7.79         2.76         2.04         3.39         0.85 
TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        0.39         1.02         0.66         0.69         0.53         1.08 
TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.76        18.25        47.70        47.08 

      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                          0.46                           0.16 
      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE 
                         7.345                          5.130 
[1] "0.5 - 121.1 (7.3)" "0.2 - 119.5 (5.1)"
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 17(10Q21.1) CNV" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 17(10Q21.1) CNV"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 17(10Q21.1) WILD-TYPE" "DEL PEAK 17(10Q21.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 17(10Q21.1) WILD-TYPE"       "DEL PEAK 17(10Q21.1) CNV" 
[1] "hr=" "2"  
D42V2, continuous
D42V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10Q21.1) CNV         15   22
  DEL PEAK 17(10Q21.1) WILD-TYPE   59   66
        clus
vv       DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE
  FEMALE                       15                             59
  MALE                         22                             66
D42V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10Q21.1) CNV         31    5
  DEL PEAK 17(10Q21.1) WILD-TYPE  112    8
                                clus
vv                               DEL PEAK 17(10Q21.1) CNV
  RECTAL ADENOCARCINOMA                                31
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               DEL PEAK 17(10Q21.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     112
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D42V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10Q21.1) CNV          4   33
  DEL PEAK 17(10Q21.1) WILD-TYPE    2  123
     clus
vv    DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE
  NO                         4                              2
  YES                       33                            123
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 17(10Q21.1) CNV       33  1   0  3
  DEL PEAK 17(10Q21.1) WILD-TYPE 90 21   2 10
D42V6, multiclass
     clus
vv    DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE
  M0                        33                             90
  M1                         1                             21
  M1A                        0                              2
  MX                         3                             10
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 17(10Q21.1) CNV       21  8   0   3   0  3   0   2  0
  DEL PEAK 17(10Q21.1) WILD-TYPE 62 27   4   2   1 20   2   5  1
D42V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 17(10Q21.1) CNV       30  1  0  0
  DEL PEAK 17(10Q21.1) WILD-TYPE 91  1 12  3
D42V8, multiclass
    clus
vv   DEL PEAK 17(10Q21.1) CNV DEL PEAK 17(10Q21.1) WILD-TYPE
  R0                       30                             91
  R1                        1                              1
  R2                        0                             12
  RX                        0                              3
D42V9, continuous
D42V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 17(10Q21.1) CNV             7        1        12         1         0
  DEL PEAK 17(10Q21.1) WILD-TYPE      23        7        26         1         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 17(10Q21.1) CNV               0          4          6          4
  DEL PEAK 17(10Q21.1) WILD-TYPE         5          5         17          9
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 17(10Q21.1) CNV              1         1
  DEL PEAK 17(10Q21.1) WILD-TYPE       16         8
D42V11, multiclass

Clustering(43) Variable = Del Peak 18(10q25.2)
D43V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(10Q25.2) CNV       33  2
  DEL PEAK 18(10Q25.2) WILD-TYPE 86  9
      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                            35                             95 
      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                             2                              9 
$`DEL PEAK 18(10Q25.2) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-6136 TCGA-AF-6672 
       19.53        15.85        13.55        12.72         7.59         7.33 
TCGA-AG-3887 TCGA-AG-4001 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A01L 
        0.92         1.02        13.91        25.94        17.03        12.00 
TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A02X TCGA-AH-6897 TCGA-BM-6198 TCGA-CI-6624 
       70.03        10.98        40.96         4.60        10.19         4.70 
TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DE 
        7.36        27.91        19.99         3.98         5.00       121.08 
TCGA-DY-A1DF TCGA-EF-5831 TCGA-EI-6509 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-7002 
       24.13         2.40         8.22         7.10         6.15         2.76 
TCGA-F5-6702 TCGA-F5-6812 TCGA-F5-6864 TCGA-G5-6572 TCGA-G5-6641 
        2.17         0.66         0.46        47.08        20.91 

$`DEL PEAK 18(10Q25.2) WILD-TYPE`
TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 
       11.77        10.62        19.10        17.62        10.39        14.50 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
        8.45         6.35        12.00         1.02         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        0.99         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       20.94         6.02        23.01        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
        1.02        12.00        63.98        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 
       38.93        61.94        38.01         0.49         1.45         0.69 
TCGA-AH-6644 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 
        0.72         1.81         6.02         6.02         6.94         9.37 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6681 TCGA-DT-5265 
        5.03         8.98         6.97         6.97         5.92         0.26 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
      119.51        41.33        57.24        51.48        32.58         0.49 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
        7.63         0.16         2.17         0.46         3.98         0.66 
TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
        6.90         3.55         3.98         2.73         5.23         7.79 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6813 
        2.04         3.39         0.85         0.39         1.02         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 
        0.53         1.08         0.76        18.25        47.70 

      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                          0.46                           0.16 
      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE 
                         10.19                           5.03 
[1] "0.5 - 121.1 (10.2)" "0.2 - 119.5 (5.0)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 18(10Q25.2) CNV" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 18(10Q25.2) WILD-TYPE"       "DEL PEAK 18(10Q25.2) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 18(10Q25.2) WILD-TYPE" "DEL PEAK 18(10Q25.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "DEL PEAK 18(10Q25.2) CNV"       "DEL PEAK 18(10Q25.2) CNV" 
[1] "hr=" "1.8"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q25.2) CNV         22   25
  DEL PEAK 18(10Q25.2) WILD-TYPE   52   63
        clus
vv       DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE
  FEMALE                       22                             52
  MALE                         25                             63
D43V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q25.2) CNV         38    7
  DEL PEAK 18(10Q25.2) WILD-TYPE  105    6
                                clus
vv                               DEL PEAK 18(10Q25.2) CNV
  RECTAL ADENOCARCINOMA                                38
  RECTAL MUCINOUS ADENOCARCINOMA                        7
                                clus
vv                               DEL PEAK 18(10Q25.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     105
  RECTAL MUCINOUS ADENOCARCINOMA                              6
D43V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(10Q25.2) CNV          5   42
  DEL PEAK 18(10Q25.2) WILD-TYPE    1  114
     clus
vv    DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE
  NO                         5                              1
  YES                       42                            114
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 18(10Q25.2) CNV       38  4   0  3
  DEL PEAK 18(10Q25.2) WILD-TYPE 85 18   2 10
D43V6, multiclass
     clus
vv    DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE
  M0                        38                             85
  M1                         4                             18
  M1A                        0                              2
  MX                         3                             10
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 18(10Q25.2) CNV       24  9   0   3   0  8   0   2  0
  DEL PEAK 18(10Q25.2) WILD-TYPE 59 26   4   2   1 15   2   5  1
D43V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 18(10Q25.2) CNV       39  0  1  0
  DEL PEAK 18(10Q25.2) WILD-TYPE 82  2 11  3
D43V8, multiclass
    clus
vv   DEL PEAK 18(10Q25.2) CNV DEL PEAK 18(10Q25.2) WILD-TYPE
  R0                       39                             82
  R1                        0                              2
  R2                        1                             11
  RX                        0                              3
D43V9, continuous
D43V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 18(10Q25.2) CNV             7        1        16         0         0
  DEL PEAK 18(10Q25.2) WILD-TYPE      23        7        22         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 18(10Q25.2) CNV               1          3          7          6
  DEL PEAK 18(10Q25.2) WILD-TYPE         4          6         16          7
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 18(10Q25.2) CNV              4         1
  DEL PEAK 18(10Q25.2) WILD-TYPE       13         8
D43V11, multiclass

Clustering(44) Variable = Del Peak 19(11q22.3)
D44V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(11Q22.3) CNV       28  1
  DEL PEAK 19(11Q22.3) WILD-TYPE 91 10
      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                            29                            101 
      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                             1                             10 
$`DEL PEAK 19(11Q22.3) CNV`
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 
       10.62        13.55        19.10        14.50         7.59         7.33 
TCGA-AG-3581 TCGA-AG-3587 TCGA-AG-3727 TCGA-AG-A008 TCGA-AG-A01L TCGA-AG-A01W 
        1.02         1.02         0.95        13.91        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 
       63.98        10.98        40.96         0.49         0.69         0.72 
TCGA-BM-6198 TCGA-CL-4957 TCGA-DC-6155 TCGA-DC-6158 TCGA-DC-6160 TCGA-DT-5265 
       10.19        13.97         7.36         6.97        19.99         0.26 
TCGA-DY-A1DF TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6881 TCGA-EI-7004 
       24.13         2.17         8.22         6.15         2.04 

$`DEL PEAK 19(11Q22.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 
       19.53        15.85        11.77        12.72        17.62        10.39 
TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
        8.45         6.35        12.00         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         0.99         7.96         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 
        1.02         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        1.02         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
        1.02         1.02        12.00        51.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6897 TCGA-AH-6903 
       38.93        61.94        38.01         1.45         4.60         1.81 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-5917 
        6.02         6.02         6.94         9.37         4.70        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01         9.99         5.03         8.98 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA 
        6.97        27.91         5.92         3.98         5.00       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
       41.33        57.24       121.08        51.48        32.58         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
        2.40         7.63         0.16         0.46         3.98         0.66 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        6.90         7.10         3.55         3.98         2.73         5.23 
TCGA-EI-6917 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
        7.79         2.76         3.39         0.85         2.17         0.39 
TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 
        1.02         0.66         0.69         0.53         1.08         0.76 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.46        18.25        47.70        47.08        20.91 

      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                          0.26                           0.16 
      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                         70.03                         121.08 
      DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE 
                          8.22                           5.23 
[1] "0.3 - 70.0 (8.2)"  "0.2 - 121.1 (5.2)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 19(11Q22.3) CNV"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 19(11Q22.3) WILD-TYPE"       "DEL PEAK 19(11Q22.3) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 19(11Q22.3) CNV" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 19(11Q22.3) WILD-TYPE" "DEL PEAK 19(11Q22.3) WILD-TYPE" 
[1] "hr=" "2.8"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) CNV         18   19
  DEL PEAK 19(11Q22.3) WILD-TYPE   56   69
        clus
vv       DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE
  FEMALE                       18                             56
  MALE                         19                             69
D44V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) CNV         27    6
  DEL PEAK 19(11Q22.3) WILD-TYPE  116    7
                                clus
vv                               DEL PEAK 19(11Q22.3) CNV
  RECTAL ADENOCARCINOMA                                27
  RECTAL MUCINOUS ADENOCARCINOMA                        6
                                clus
vv                               DEL PEAK 19(11Q22.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     116
  RECTAL MUCINOUS ADENOCARCINOMA                              7
D44V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11Q22.3) CNV          3   34
  DEL PEAK 19(11Q22.3) WILD-TYPE    3  122
     clus
vv    DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE
  NO                         3                              3
  YES                       34                            122
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 19(11Q22.3) CNV       30  1   0  5
  DEL PEAK 19(11Q22.3) WILD-TYPE 93 21   2  8
D44V6, multiclass
     clus
vv    DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE
  M0                        30                             93
  M1                         1                             21
  M1A                        0                              2
  MX                         5                              8
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 19(11Q22.3) CNV       18  8   1   2   0  2   0   5  1
  DEL PEAK 19(11Q22.3) WILD-TYPE 65 27   3   3   1 21   2   2  0
D44V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 19(11Q22.3) CNV       28  0  0  1
  DEL PEAK 19(11Q22.3) WILD-TYPE 93  2 12  2
D44V8, multiclass
    clus
vv   DEL PEAK 19(11Q22.3) CNV DEL PEAK 19(11Q22.3) WILD-TYPE
  R0                       28                             93
  R1                        0                              2
  R2                        0                             12
  RX                        1                              2
D44V9, continuous
D44V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 19(11Q22.3) CNV             9        3         6         0         0
  DEL PEAK 19(11Q22.3) WILD-TYPE      21        5        32         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 19(11Q22.3) CNV               2          3          5          4
  DEL PEAK 19(11Q22.3) WILD-TYPE         3          6         18          9
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 19(11Q22.3) CNV              1         2
  DEL PEAK 19(11Q22.3) WILD-TYPE       16         7
D44V11, multiclass

Clustering(45) Variable = Del Peak 20(12p13.1)
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(12P13.1) CNV       21  4
  DEL PEAK 20(12P13.1) WILD-TYPE 98  7
      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                            25                            105 
      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                             4                              7 
$`DEL PEAK 20(12P13.1) CNV`
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 
       10.62        13.55        19.10        10.39        14.50         7.59 
TCGA-AF-6655 TCGA-AG-3731 TCGA-AG-A00C TCGA-AG-A01W TCGA-AG-A026 TCGA-AH-6544 
        6.35         1.02         6.02        70.03         1.94         0.49 
TCGA-CI-6620 TCGA-DC-4749 TCGA-DC-6155 TCGA-DC-6158 TCGA-DY-A1DF TCGA-DY-A1DG 
        6.02        11.01         7.36         6.97        24.13        51.48 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6514 TCGA-EI-6881 TCGA-F5-6702 TCGA-F5-6812 
        2.17         8.22         7.10         6.15         2.17         0.66 
TCGA-G5-6641 
       20.91 

$`DEL PEAK 20(12P13.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-5654 
       19.53        15.85        11.77        12.72        17.62         8.45 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
        7.33        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 
        1.02         0.99         0.99         7.96         0.95         0.99 
TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.92         1.02         0.99         0.99 
TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 
        1.02         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       20.94        13.91        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01Y 
       13.02         1.02         1.02        12.00        12.00        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        51.98        49.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
       38.01         1.45         0.69         0.72         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
       10.19         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
       60.00         7.99        10.98         9.99         5.03         8.98 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
        6.97        27.91        19.99         5.92         3.98         5.00 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1H8 
        0.26       119.51        41.33        57.24       121.08        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6511 
        0.49         2.40         7.63         0.16         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        0.66         6.90         3.55         3.98         2.73         5.23 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 
        7.79         2.76         2.04         3.39         0.85         0.39 
TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        1.02         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
       18.25        47.70        47.08 

      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                          0.49                           0.16 
      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                         70.03                         121.08 
      DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE 
                          7.36                           5.03 
[1] "0.5 - 70.0 (7.4)"  "0.2 - 121.1 (5.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 20(12P13.1) CNV"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 20(12P13.1) CNV" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 20(12P13.1) WILD-TYPE" "DEL PEAK 20(12P13.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 20(12P13.1) WILD-TYPE"       "DEL PEAK 20(12P13.1) CNV" 
[1] "hr=" "2.8"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.1) CNV         16   17
  DEL PEAK 20(12P13.1) WILD-TYPE   58   71
        clus
vv       DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE
  FEMALE                       16                             58
  MALE                         17                             71
D45V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.1) CNV         29    1
  DEL PEAK 20(12P13.1) WILD-TYPE  114   12
                                clus
vv                               DEL PEAK 20(12P13.1) CNV
  RECTAL ADENOCARCINOMA                                29
  RECTAL MUCINOUS ADENOCARCINOMA                        1
                                clus
vv                               DEL PEAK 20(12P13.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     114
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D45V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(12P13.1) CNV          1   32
  DEL PEAK 20(12P13.1) WILD-TYPE    5  124
     clus
vv    DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE
  NO                         1                              5
  YES                       32                            124
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 20(12P13.1) CNV        22   7   0   4
  DEL PEAK 20(12P13.1) WILD-TYPE 101  15   2   9
D45V6, multiclass
     clus
vv    DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE
  M0                        22                            101
  M1                         7                             15
  M1A                        0                              2
  MX                         4                              9
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 20(12P13.1) CNV       14 10   2   2   0  3   0   2  0
  DEL PEAK 20(12P13.1) WILD-TYPE 69 25   2   3   1 20   2   5  1
D45V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 20(12P13.1) CNV       24  1  2  0
  DEL PEAK 20(12P13.1) WILD-TYPE 97  1 10  3
D45V8, multiclass
    clus
vv   DEL PEAK 20(12P13.1) CNV DEL PEAK 20(12P13.1) WILD-TYPE
  R0                       24                             97
  R1                        1                              1
  R2                        2                             10
  RX                        0                              3
D45V9, continuous
D45V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 20(12P13.1) CNV             4        3         7         0         0
  DEL PEAK 20(12P13.1) WILD-TYPE      26        5        31         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 20(12P13.1) CNV               0          4          4          3
  DEL PEAK 20(12P13.1) WILD-TYPE         5          5         19         10
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 20(12P13.1) CNV              2         4
  DEL PEAK 20(12P13.1) WILD-TYPE       15         5
D45V11, multiclass

Clustering(46) Variable = Del Peak 21(12q21.33)
D46V1, survival
                                 sevent
clus2                               0   1
  DEL PEAK 21(12Q21.33) CNV        18   2
  DEL PEAK 21(12Q21.33) WILD-TYPE 101   9
      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                             20                             110 
      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                              2                               9 
$`DEL PEAK 21(12Q21.33) CNV`
TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-4001 TCGA-AG-A00Y 
       10.62        12.72        14.50         7.59         1.02        23.01 
TCGA-AG-A014 TCGA-AG-A032 TCGA-AH-6544 TCGA-DC-6155 TCGA-DC-6158 TCGA-DY-A1DE 
       15.91        38.01         0.49         7.36         6.97       121.08 
TCGA-DY-A1DF TCGA-EI-6509 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-F5-6702 
       24.13         8.22         7.10         6.15         3.98         2.17 
TCGA-F5-6812 TCGA-G5-6233 
        0.66        18.25 

$`DEL PEAK 21(12Q21.33) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3911 
       19.53        15.85        11.77        13.55        19.10        17.62 
TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 
       10.39         8.45         6.35         7.33        12.00         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 
        1.02         2.01         1.02         1.02         0.99         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 
        7.96         0.95         1.02         0.99         0.99         1.02 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         0.99        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       25.94        17.03        13.02         1.02         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       12.00        70.03        63.98        10.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6643 
        1.94        38.93        61.94        40.96         1.45         0.69 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
        0.72         4.60         1.81        10.19         6.02         6.02 
TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 
        6.94         9.37         4.70        13.97        60.00         7.99 
TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 
       10.98        11.01         9.99         5.03         8.98         6.97 
TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 
       27.91        19.99         5.92         3.98         5.00         0.26 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 
      119.51        41.33        57.24        51.48        32.58         0.49 
TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6511 
        2.40         7.63         0.16         2.17         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 
        0.66         6.90         3.55         2.73         5.23         7.79 
TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6811 
        2.76         2.04         3.39         0.85         0.39         1.02 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 
        0.69         0.53         1.08         0.76         0.46        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                           0.49                            0.16 
      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                         121.08                          119.51 
      DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE 
                          7.905                           5.575 
[1] "0.5 - 121.1 (7.9)" "0.2 - 119.5 (5.6)"
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "DEL PEAK 21(12Q21.33) CNV"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "DEL PEAK 21(12Q21.33) CNV"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "DEL PEAK 21(12Q21.33) CNV"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "DEL PEAK 21(12Q21.33) CNV"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "DEL PEAK 21(12Q21.33) CNV"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "DEL PEAK 21(12Q21.33) CNV"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"DEL PEAK 21(12Q21.33) WILD-TYPE"       "DEL PEAK 21(12Q21.33) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "DEL PEAK 21(12Q21.33) CNV" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 21(12Q21.33) WILD-TYPE" "DEL PEAK 21(12Q21.33) WILD-TYPE" 
[1] "hr=" "1.5"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(12Q21.33) CNV         13   15
  DEL PEAK 21(12Q21.33) WILD-TYPE   61   73
        clus
vv       DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE
  FEMALE                        13                              61
  MALE                          15                              73
D46V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(12Q21.33) CNV         26    1
  DEL PEAK 21(12Q21.33) WILD-TYPE  117   12
                                clus
vv                               DEL PEAK 21(12Q21.33) CNV
  RECTAL ADENOCARCINOMA                                 26
  RECTAL MUCINOUS ADENOCARCINOMA                         1
                                clus
vv                               DEL PEAK 21(12Q21.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      117
  RECTAL MUCINOUS ADENOCARCINOMA                              12
D46V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(12Q21.33) CNV          2   26
  DEL PEAK 21(12Q21.33) WILD-TYPE    4  130
     clus
vv    DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE
  NO                          2                               4
  YES                        26                             130
                                 vv
clus                              M0 M1 M1A MX
  DEL PEAK 21(12Q21.33) CNV       24  2   0  2
  DEL PEAK 21(12Q21.33) WILD-TYPE 99 20   2 11
D46V6, multiclass
     clus
vv    DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE
  M0                         24                              99
  M1                          2                              20
  M1A                         0                               2
  MX                          2                              11
                                 vv
clus                              N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 21(12Q21.33) CNV       16  5   0   2   0  3   0   2  0
  DEL PEAK 21(12Q21.33) WILD-TYPE 67 30   4   3   1 20   2   5  1
D46V7, multiclass
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 21(12Q21.33) CNV       24  0  0  0
  DEL PEAK 21(12Q21.33) WILD-TYPE 97  2 12  3
D46V8, multiclass
    clus
vv   DEL PEAK 21(12Q21.33) CNV DEL PEAK 21(12Q21.33) WILD-TYPE
  R0                        24                              97
  R1                         0                               2
  R2                         0                              12
  RX                         0                               3
D46V9, continuous
D46V10, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  DEL PEAK 21(12Q21.33) CNV             4        1        10         0
  DEL PEAK 21(12Q21.33) WILD-TYPE      26        7        28         2
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 21(12Q21.33) CNV               2         0          2          3
  DEL PEAK 21(12Q21.33) WILD-TYPE         0         5          7         20
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 21(12Q21.33) CNV                3        0         2
  DEL PEAK 21(12Q21.33) WILD-TYPE         10       17         7
D46V11, multiclass

Clustering(47) Variable = Del Peak 22(14q11.2)
D47V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 22(14Q11.2) CNV       49  5
  DEL PEAK 22(14Q11.2) WILD-TYPE 70  6
      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                            54                             76 
      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                             5                              6 
$`DEL PEAK 22(14Q11.2) CNV`
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-6672 
       15.85        13.55        19.10        12.72        17.62         7.33 
TCGA-AG-3581 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3893 TCGA-AG-3999 
        1.02         0.95         0.99         1.02         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A026 
        1.02         1.02         6.02        25.94        23.01         1.94 
TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
       38.93        38.01         0.49        10.19         6.02         6.02 
TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5869 
        9.37         4.70        13.97         7.99        11.01         5.03 
TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DE 
        7.36        27.91         6.97         3.98         5.00       121.08 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6513 
       24.13        51.48         7.63         2.17         8.22         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6884 TCGA-EI-7002 TCGA-F5-6571 TCGA-F5-6810 
        7.10         6.15         2.73         2.76         0.85         0.39 
TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6641 
        1.02         0.66         0.76        18.25        47.70        20.91 

$`DEL PEAK 22(14Q11.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 
       19.53        11.77        10.62        10.39        14.50         8.45 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
        7.59         6.35        12.00         1.02         2.01         1.02 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3731 TCGA-AG-3878 
        1.02         0.99         0.99         7.96         1.02         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-4007 TCGA-AG-4022 
        0.92         1.02         0.99         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       20.94        13.91        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
        1.02        12.00        12.00        70.03        63.98        10.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6643 
       51.98        49.94        61.94        40.96         1.45         0.69 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6622 TCGA-CL-5917 TCGA-DC-4745 
        0.72         4.60         1.81         6.94        60.00        10.98 
TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 
        9.99         8.98         6.97        19.99         5.92         0.26 
TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
      119.51        41.33        57.24        32.58         0.49         2.40 
TCGA-EI-6507 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6882 TCGA-EI-6883 
        0.16         0.46         3.98         0.66         3.55         3.98 
TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6813 
        5.23         7.79         2.04         3.39         2.17         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 TCGA-G5-6572 
        0.53         1.08         0.46        47.08 

      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                          0.39                           0.16 
      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE 
                         6.935                          5.575 
[1] "0.4 - 121.1 (6.9)" "0.2 - 119.5 (5.6)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 22(14Q11.2) WILD-TYPE" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 22(14Q11.2) CNV" "DEL PEAK 22(14Q11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 22(14Q11.2) CNV"       "DEL PEAK 22(14Q11.2) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 22(14Q11.2) WILD-TYPE"       "DEL PEAK 22(14Q11.2) CNV" 
[1] "hr=" "2.1"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q11.2) CNV         28   39
  DEL PEAK 22(14Q11.2) WILD-TYPE   46   49
        clus
vv       DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE
  FEMALE                       28                             46
  MALE                         39                             49
D47V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q11.2) CNV         63    2
  DEL PEAK 22(14Q11.2) WILD-TYPE   80   11
                                clus
vv                               DEL PEAK 22(14Q11.2) CNV
  RECTAL ADENOCARCINOMA                                63
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               DEL PEAK 22(14Q11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      80
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D47V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(14Q11.2) CNV          4   63
  DEL PEAK 22(14Q11.2) WILD-TYPE    2   93
     clus
vv    DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE
  NO                         4                              2
  YES                       63                             93
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 22(14Q11.2) CNV       52  8   0  6
  DEL PEAK 22(14Q11.2) WILD-TYPE 71 14   2  7
D47V6, multiclass
     clus
vv    DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE
  M0                        52                             71
  M1                         8                             14
  M1A                        0                              2
  MX                         6                              7
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 22(14Q11.2) CNV       33 18   2   2   1  9   0   2  0
  DEL PEAK 22(14Q11.2) WILD-TYPE 50 17   2   3   0 14   2   5  1
D47V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 22(14Q11.2) CNV       49  2  2  1
  DEL PEAK 22(14Q11.2) WILD-TYPE 72  0 10  2
D47V8, multiclass
    clus
vv   DEL PEAK 22(14Q11.2) CNV DEL PEAK 22(14Q11.2) WILD-TYPE
  R0                       49                             72
  R1                        2                              0
  R2                        2                             10
  RX                        1                              2
D47V9, continuous
D47V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 22(14Q11.2) CNV            11        2        20         0         1
  DEL PEAK 22(14Q11.2) WILD-TYPE      19        6        18         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 22(14Q11.2) CNV               1          5         12          6
  DEL PEAK 22(14Q11.2) WILD-TYPE         4          4         11          7
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 22(14Q11.2) CNV              6         2
  DEL PEAK 22(14Q11.2) WILD-TYPE       11         7
D47V11, multiclass

Clustering(48) Variable = Del Peak 23(14q31.1)
D48V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(14Q31.1) CNV       51  5
  DEL PEAK 23(14Q31.1) WILD-TYPE 68  6
      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                            56                             74 
      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                             5                              6 
$`DEL PEAK 23(14Q31.1) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2692 TCGA-AF-3911 TCGA-AG-3582 TCGA-AG-3587 
       15.85        11.77        13.55        17.62         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3893 
        0.99         0.95         1.02         0.99         1.02         0.99 
TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01W 
        1.02         1.02         6.02        25.94        23.01        70.03 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AH-6544 TCGA-BM-6198 TCGA-CI-6619 
        1.94        38.93        38.01         0.49        10.19         6.02 
TCGA-CI-6620 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4745 
        6.02         9.37         4.70        13.97         7.99        10.98 
TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 
       11.01         5.03         7.36        27.91         6.97         3.98 
TCGA-DC-6683 TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DG TCGA-EI-6506 TCGA-EI-6509 
        5.00        41.33       121.08        51.48         7.63         8.22 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 
        6.90         7.10         6.15         3.98         2.73         2.76 
TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6863 TCGA-G5-6233 
        0.85         0.39         1.02         0.66         0.76        18.25 
TCGA-G5-6235 TCGA-G5-6641 
       47.70        20.91 

$`DEL PEAK 23(14Q31.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3913 TCGA-AF-4110 
       19.53        10.62        19.10        12.72        10.39        14.50 
TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 
        8.45         7.59         6.35         7.33        12.00         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 
        2.01         1.02         0.99         7.96         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4022 
        1.02         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       20.94        13.91        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
        1.02        12.00        12.00        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 
       49.94        61.94        40.96         1.45         0.69         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6622 TCGA-CL-5917 TCGA-DC-5337 TCGA-DC-6154 
        4.60         1.81         6.94        60.00         9.99         8.98 
TCGA-DC-6156 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DD 
        6.97        19.99         5.92         0.26       119.51        57.24 
TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6507 TCGA-EI-6508 
       24.13        32.58         0.49         2.40         0.16         2.17 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 
        0.46         3.98         0.66         3.55         5.23         7.79 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 
        2.04         3.39         2.17         0.69         0.53         1.08 
TCGA-F5-6864 TCGA-G5-6572 
        0.46        47.08 

      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                          0.39                           0.16 
      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE 
                         6.525                          6.135 
[1] "0.4 - 121.1 (6.5)" "0.2 - 119.5 (6.1)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 23(14Q31.1) WILD-TYPE" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 23(14Q31.1) CNV" "DEL PEAK 23(14Q31.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 23(14Q31.1) CNV"       "DEL PEAK 23(14Q31.1) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 23(14Q31.1) WILD-TYPE"       "DEL PEAK 23(14Q31.1) CNV" 
[1] "hr=" "1.4"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q31.1) CNV         28   41
  DEL PEAK 23(14Q31.1) WILD-TYPE   46   47
        clus
vv       DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE
  FEMALE                       28                             46
  MALE                         41                             47
D48V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q31.1) CNV         65    1
  DEL PEAK 23(14Q31.1) WILD-TYPE   78   12
                                clus
vv                               DEL PEAK 23(14Q31.1) CNV
  RECTAL ADENOCARCINOMA                                65
  RECTAL MUCINOUS ADENOCARCINOMA                        1
                                clus
vv                               DEL PEAK 23(14Q31.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      78
  RECTAL MUCINOUS ADENOCARCINOMA                             12
D48V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(14Q31.1) CNV          2   67
  DEL PEAK 23(14Q31.1) WILD-TYPE    4   89
     clus
vv    DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE
  NO                         2                              4
  YES                       67                             89
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 23(14Q31.1) CNV       54 10   0  4
  DEL PEAK 23(14Q31.1) WILD-TYPE 69 12   2  9
D48V6, multiclass
     clus
vv    DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE
  M0                        54                             69
  M1                        10                             12
  M1A                        0                              2
  MX                         4                              9
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 23(14Q31.1) CNV       35 20   2   2   1  8   0   1  0
  DEL PEAK 23(14Q31.1) WILD-TYPE 48 15   2   3   0 15   2   6  1
D48V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 23(14Q31.1) CNV       50  2  4  1
  DEL PEAK 23(14Q31.1) WILD-TYPE 71  0  8  2
D48V8, multiclass
    clus
vv   DEL PEAK 23(14Q31.1) CNV DEL PEAK 23(14Q31.1) WILD-TYPE
  R0                       50                             71
  R1                        2                              0
  R2                        4                              8
  RX                        1                              2
D48V9, continuous
D48V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 23(14Q31.1) CNV            10        2        22         0         2
  DEL PEAK 23(14Q31.1) WILD-TYPE      20        6        16         2         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 23(14Q31.1) CNV               1          5         12          4
  DEL PEAK 23(14Q31.1) WILD-TYPE         4          4         11          9
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 23(14Q31.1) CNV              7         2
  DEL PEAK 23(14Q31.1) WILD-TYPE       10         7
D48V11, multiclass

Clustering(49) Variable = Del Peak 24(15q22.33)
D49V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 24(15Q22.33) CNV       51  6
  DEL PEAK 24(15Q22.33) WILD-TYPE 68  5
      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                             57                              73 
      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                              6                               5 
$`DEL PEAK 24(15Q22.33) CNV`
TCGA-AF-2687 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-4110 
       19.53        10.62        13.55        12.72        17.62        14.50 
TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3742 TCGA-AG-3893 TCGA-AG-3999 
        7.33         1.02         2.01         0.99         0.99         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A01J 
        1.02        13.91        25.94        23.01        17.03         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 
       12.00        70.03        38.93        40.96        38.01         0.49 
TCGA-AH-6643 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6623 TCGA-CL-5918 TCGA-DC-4745 
        0.69        10.19         6.02         9.37         7.99        10.98 
TCGA-DC-5869 TCGA-DC-6155 TCGA-DC-6157 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DC 
        5.03         7.36        27.91         3.98         5.00        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 
       57.24       121.08        24.13        51.48         0.49         2.40 
TCGA-EI-6511 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        3.98         7.10         6.15         3.98         2.73         5.23 
TCGA-EI-7002 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        2.76         0.85         2.17         1.02         0.66         0.69 
TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6641 
        0.46        18.25        20.91 

$`DEL PEAK 24(15Q22.33) WILD-TYPE`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2693 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6136 
       15.85        11.77        19.10        10.39         8.45         7.59 
TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
        6.35        12.00         1.02         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3883 
        0.99         7.96         0.95         1.02         0.99         1.02 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-4001 TCGA-AG-4007 
        0.92         1.02         0.99         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        0.99        20.94         6.02        15.91        13.02         1.02 
TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       12.00        63.98        10.98        51.98        49.94         1.94 
TCGA-AG-A02N TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6620 
       61.94         1.45         0.72         4.60         1.81         6.02 
TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-DC-4749 TCGA-DC-5337 
        6.94         4.70        13.97        60.00        11.01         9.99 
TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DT-5265 
        8.98         6.97         6.97        19.99         5.92         0.26 
TCGA-DY-A0XA TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
      119.51        32.58         7.63         0.16         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6882 TCGA-EI-6917 TCGA-EI-7004 
        0.46         0.66         6.90         3.55         7.79         2.04 
TCGA-F5-6465 TCGA-F5-6810 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6235 
        3.39         0.39         0.53         1.08         0.76        47.70 
TCGA-G5-6572 
       47.08 

      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                           0.46                            0.16 
      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                         121.08                          119.51 
      DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE 
                           7.33                            6.02 
[1] "0.5 - 121.1 (7.3)" "0.2 - 119.5 (6.0)"
                     TCGA-AF-2687                      TCGA-AF-2689 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-3400                      TCGA-AF-3911 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A014                      TCGA-AG-A015 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-4957                      TCGA-CL-5917 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6160                      TCGA-DC-6681 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EF-5830                      TCGA-EF-5831 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6512                      TCGA-EI-6513 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6884                      TCGA-EI-6885 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "DEL PEAK 24(15Q22.33) CNV"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 24(15Q22.33) WILD-TYPE" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "DEL PEAK 24(15Q22.33) CNV" "DEL PEAK 24(15Q22.33) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 24(15Q22.33) WILD-TYPE"       "DEL PEAK 24(15Q22.33) CNV" 
[1] "hr=" "1.4"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(15Q22.33) CNV         31   44
  DEL PEAK 24(15Q22.33) WILD-TYPE   43   44
        clus
vv       DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE
  FEMALE                        31                              43
  MALE                          44                              44
D49V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(15Q22.33) CNV         66    6
  DEL PEAK 24(15Q22.33) WILD-TYPE   77    7
                                clus
vv                               DEL PEAK 24(15Q22.33) CNV
  RECTAL ADENOCARCINOMA                                 66
  RECTAL MUCINOUS ADENOCARCINOMA                         6
                                clus
vv                               DEL PEAK 24(15Q22.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       77
  RECTAL MUCINOUS ADENOCARCINOMA                               7
D49V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 24(15Q22.33) CNV          5   70
  DEL PEAK 24(15Q22.33) WILD-TYPE    1   86
     clus
vv    DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE
  NO                          5                               1
  YES                        70                              86
                                 vv
clus                              M0 M1 M1A MX
  DEL PEAK 24(15Q22.33) CNV       57 11   0  6
  DEL PEAK 24(15Q22.33) WILD-TYPE 66 11   2  7
D49V6, multiclass
     clus
vv    DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE
  M0                         57                              66
  M1                         11                              11
  M1A                         0                               2
  MX                          6                               7
                                 vv
clus                              N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 24(15Q22.33) CNV       34 19   2   3   1 13   0   3  0
  DEL PEAK 24(15Q22.33) WILD-TYPE 49 16   2   2   0 10   2   4  1
D49V7, multiclass
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 24(15Q22.33) CNV       57  0  4  1
  DEL PEAK 24(15Q22.33) WILD-TYPE 64  2  8  2
D49V8, multiclass
    clus
vv   DEL PEAK 24(15Q22.33) CNV DEL PEAK 24(15Q22.33) WILD-TYPE
  R0                        57                              64
  R1                         0                               2
  R2                         4                               8
  RX                         1                               2
D49V9, continuous
D49V10, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  DEL PEAK 24(15Q22.33) CNV             8        1        23         1
  DEL PEAK 24(15Q22.33) WILD-TYPE      22        7        15         1
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 24(15Q22.33) CNV               2         2          4         13
  DEL PEAK 24(15Q22.33) WILD-TYPE         0         3          5         10
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 24(15Q22.33) CNV                8        9         3
  DEL PEAK 24(15Q22.33) WILD-TYPE          5        8         6
D49V11, multiclass

Clustering(50) Variable = Del Peak 25(16p13.3)
D50V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 25(16P13.3) CNV         5   2
  DEL PEAK 25(16P13.3) WILD-TYPE 114   9
      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                             7                            123 
      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                             2                              9 
$`DEL PEAK 25(16P13.3) CNV`
TCGA-AG-3726 TCGA-AG-A02G TCGA-DC-6682 TCGA-EI-6882 TCGA-F5-6811 TCGA-F5-6814 
        7.96        38.93         3.98         3.55         1.02         0.53 
TCGA-G5-6233 
       18.25 

$`DEL PEAK 25(16P13.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        17.62        10.39        14.50         8.45         7.59 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
        6.35         7.33        12.00         1.02         1.02         2.01 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3731 
        1.02         1.02         0.99         0.99         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         1.02         1.02         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        0.99        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       17.03        15.91        13.02         1.02         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       12.00        70.03        63.98        10.98        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 
        1.94        61.94        40.96        38.01         0.49         1.45 
TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 
        0.69         0.72         4.60         1.81        10.19         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
        6.02         6.94         9.37         4.70        13.97        60.00 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
        7.99        10.98        11.01         9.99         5.03         8.98 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
        7.36         6.97        27.91         6.97        19.99         5.92 
TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE 
        5.00         0.26       119.51        41.33        57.24       121.08 
TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
       24.13        51.48        32.58         0.49         2.40         7.63 
TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 
        0.16         2.17         8.22         0.46         3.98         0.66 
TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        6.90         7.10         6.15         3.98         2.73         5.23 
TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 
        7.79         2.76         2.04         3.39         0.85         2.17 
TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.39         0.66         0.69         1.08         0.76         0.46 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       47.70        47.08        20.91 

      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                          0.53                           0.16 
      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                         38.93                         121.08 
      DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE 
                          3.98                           6.35 
[1] "0.5 - 38.9 (4.0)"  "0.2 - 121.1 (6.3)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 25(16P13.3) WILD-TYPE"       "DEL PEAK 25(16P13.3) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 25(16P13.3) CNV" "DEL PEAK 25(16P13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 25(16P13.3) WILD-TYPE" "DEL PEAK 25(16P13.3) WILD-TYPE" 
[1] "hr=" "8.2"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) CNV          6    7
  DEL PEAK 25(16P13.3) WILD-TYPE   68   81
        clus
vv       DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE
  FEMALE                        6                             68
  MALE                          7                             81
D50V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) CNV         10    2
  DEL PEAK 25(16P13.3) WILD-TYPE  133   11
                                clus
vv                               DEL PEAK 25(16P13.3) CNV
  RECTAL ADENOCARCINOMA                                10
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               DEL PEAK 25(16P13.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     133
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D50V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16P13.3) CNV          0   13
  DEL PEAK 25(16P13.3) WILD-TYPE    6  143
     clus
vv    DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE
  NO                         0                              6
  YES                       13                            143
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 25(16P13.3) CNV        11   2   0   0
  DEL PEAK 25(16P13.3) WILD-TYPE 112  20   2  13
D50V6, multiclass
     clus
vv    DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE
  M0                        11                            112
  M1                         2                             20
  M1A                        0                              2
  MX                         0                             13
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 25(16P13.3) CNV        8  1   0   0   0  4   0   0  0
  DEL PEAK 25(16P13.3) WILD-TYPE 75 34   4   5   1 19   2   7  1
D50V7, multiclass
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 25(16P13.3) CNV        10   0   1   0
  DEL PEAK 25(16P13.3) WILD-TYPE 111   2  11   3
D50V8, multiclass
    clus
vv   DEL PEAK 25(16P13.3) CNV DEL PEAK 25(16P13.3) WILD-TYPE
  R0                       10                            111
  R1                        0                              2
  R2                        1                             11
  RX                        0                              3
D50V9, continuous
D50V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 25(16P13.3) CNV             1        0         7         0         1
  DEL PEAK 25(16P13.3) WILD-TYPE      29        8        31         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 25(16P13.3) CNV               0          0          0          2
  DEL PEAK 25(16P13.3) WILD-TYPE         5          9         23         11
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 25(16P13.3) CNV              2         0
  DEL PEAK 25(16P13.3) WILD-TYPE       15         9
D50V11, multiclass

Clustering(51) Variable = Del Peak 26(16q23.1)
D51V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 26(16Q23.1) CNV        13   1
  DEL PEAK 26(16Q23.1) WILD-TYPE 106  10
      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                            14                            116 
      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                             1                             10 
$`DEL PEAK 26(16Q23.1) CNV`
TCGA-AF-6672 TCGA-AG-3582 TCGA-AG-3726 TCGA-AG-3883 TCGA-AH-6544 TCGA-AH-6644 
        7.33         1.02         7.96         1.02         0.49         0.72 
TCGA-DC-6682 TCGA-DY-A1DE TCGA-EI-6883 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6811 
        3.98       121.08         3.98         2.76         2.04         1.02 
TCGA-F5-6814 TCGA-G5-6233 
        0.53        18.25 

$`DEL PEAK 26(16Q23.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 
       12.72        17.62        10.39        14.50         8.45         7.59 
TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 
        6.35        12.00         1.02         2.01         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         0.99         0.95         1.02         0.99         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         0.99        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
        1.02         1.02        12.00        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       10.98        51.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6897 TCGA-AH-6903 
       40.96        38.01         1.45         0.69         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 
       10.19         6.02         6.02         6.94         9.37         4.70 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
        5.03         8.98         7.36         6.97        27.91         6.97 
TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
       19.99         5.92         5.00         0.26       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
       57.24        24.13        51.48        32.58         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        7.63         0.16         2.17         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6884 
        0.66         6.90         7.10         6.15         3.55         2.73 
TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
        5.23         7.79         3.39         0.85         2.17         0.39 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 
        0.66         0.69         1.08         0.76         0.46        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                          0.49                           0.16 
      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE 
                         2.400                          6.955 
[1] "0.5 - 121.1 (2.4)" "0.2 - 119.5 (7.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 26(16Q23.1) WILD-TYPE"       "DEL PEAK 26(16Q23.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 26(16Q23.1) CNV" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 26(16Q23.1) WILD-TYPE" "DEL PEAK 26(16Q23.1) WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) CNV         11   12
  DEL PEAK 26(16Q23.1) WILD-TYPE   63   76
        clus
vv       DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE
  FEMALE                       11                             63
  MALE                         12                             76
D51V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) CNV         20    2
  DEL PEAK 26(16Q23.1) WILD-TYPE  123   11
                                clus
vv                               DEL PEAK 26(16Q23.1) CNV
  RECTAL ADENOCARCINOMA                                20
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               DEL PEAK 26(16Q23.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     123
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D51V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(16Q23.1) CNV          1   22
  DEL PEAK 26(16Q23.1) WILD-TYPE    5  134
     clus
vv    DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE
  NO                         1                              5
  YES                       22                            134
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 26(16Q23.1) CNV        17   4   0   2
  DEL PEAK 26(16Q23.1) WILD-TYPE 106  18   2  11
D51V6, multiclass
     clus
vv    DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE
  M0                        17                            106
  M1                         4                             18
  M1A                        0                              2
  MX                         2                             11
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 26(16Q23.1) CNV       11  2   0   0   0  6   1   2  1
  DEL PEAK 26(16Q23.1) WILD-TYPE 72 33   4   5   1 17   1   5  0
D51V7, multiclass
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 26(16Q23.1) CNV        16   0   1   0
  DEL PEAK 26(16Q23.1) WILD-TYPE 105   2  11   3
D51V8, multiclass
    clus
vv   DEL PEAK 26(16Q23.1) CNV DEL PEAK 26(16Q23.1) WILD-TYPE
  R0                       16                            105
  R1                        0                              2
  R2                        1                             11
  RX                        0                              3
D51V9, continuous
D51V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 26(16Q23.1) CNV             3        0         7         0         2
  DEL PEAK 26(16Q23.1) WILD-TYPE      27        8        31         2         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 26(16Q23.1) CNV               1          0          0          3
  DEL PEAK 26(16Q23.1) WILD-TYPE         4          9         23         10
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 26(16Q23.1) CNV              4         1
  DEL PEAK 26(16Q23.1) WILD-TYPE       13         8
D51V11, multiclass

Clustering(52) Variable = Del Peak 27(17p12)
D52V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 27(17P12) CNV       81  6
  DEL PEAK 27(17P12) WILD-TYPE 38  5
      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                          87                           43 
      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                           6                            5 
$`DEL PEAK 27(17P12) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       15.85        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 
       17.62        14.50         7.59         6.35        12.00         1.02 
TCGA-AG-3582 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         1.02         0.99         7.96         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 
        1.02         0.99         1.02         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       17.03        15.91         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6643 
       63.98        51.98         1.94        40.96         0.49         0.69 
TCGA-AH-6644 TCGA-AH-6897 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 
        0.72         4.60        10.19         6.02         6.02         6.94 
TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6158 
       13.97         7.99        11.01         7.36         6.97         6.97 
TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
       19.99         3.98         5.00         0.26       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 
       57.24       121.08        24.13        51.48         0.49         2.40 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
        2.17         8.22         0.46         0.66         6.90         7.10 
TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
        6.15         3.98         2.73         2.76         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 
        0.85         2.17         0.39         0.66         0.69         0.53 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6235 
        0.76         0.46        47.70 

$`DEL PEAK 27(17P12) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6672 TCGA-AG-3583 TCGA-AG-3599 
       19.53        10.39         8.45         7.33         2.01         0.99 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-4022 
        0.99         0.92         1.02         0.99         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G 
       20.94        13.02         1.02        10.98        49.94        38.93 
TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6903 TCGA-CI-6623 TCGA-CI-6624 
       61.94        38.01         1.45         1.81         9.37         4.70 
TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6157 
       60.00        10.98         9.99         5.03         8.98        27.91 
TCGA-DC-6681 TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6511 TCGA-EI-6882 
        5.92        32.58         7.63         0.16         3.98         3.55 
TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6811 TCGA-F5-6861 TCGA-G5-6233 TCGA-G5-6572 
        5.23         7.79         1.02         1.08        18.25        47.08 
TCGA-G5-6641 
       20.91 

      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                        0.26                         0.16 
      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                      121.08                        61.94 
      DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE 
                        6.02                         7.63 
[1] "0.3 - 121.1 (6.0)" "0.2 - 61.9 (7.6)" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-2690                   TCGA-AF-2691 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-2692                   TCGA-AF-2693 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-3400                   TCGA-AF-3911 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-6655                   TCGA-AF-6672 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3575                   TCGA-AG-3581 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3582                   TCGA-AG-3583 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3586                   TCGA-AG-3587 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3599                   TCGA-AG-3605 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3726                   TCGA-AG-3727 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3731                   TCGA-AG-3742 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3878                   TCGA-AG-3883 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3896                   TCGA-AG-3999 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-4001                   TCGA-AG-4007 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-4008                   TCGA-AG-4022 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A002                   TCGA-AG-A008 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A00C                   TCGA-AG-A00H 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A00Y                   TCGA-AG-A011 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A014                   TCGA-AG-A015 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A016                   TCGA-AG-A01J 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A01L                   TCGA-AG-A01N 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A01W                   TCGA-AG-A01Y 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A020                   TCGA-AG-A023 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A025                   TCGA-AG-A026 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A02G                   TCGA-AG-A02N 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A02X                   TCGA-AG-A032 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AH-6544                   TCGA-AH-6547 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AH-6643                   TCGA-AH-6644 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AH-6897                   TCGA-AH-6903 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BM-6198                   TCGA-CI-6619 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CI-6620                   TCGA-CI-6622 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CI-6623                   TCGA-CI-6624 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CL-4957                   TCGA-CL-5917 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CL-5918                   TCGA-DC-4745 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-4749                   TCGA-DC-5337 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-5869                   TCGA-DC-6154 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6155                   TCGA-DC-6156 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6157                   TCGA-DC-6158 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6160                   TCGA-DC-6681 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6682                   TCGA-DC-6683 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DT-5265                   TCGA-DY-A0XA 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DC                   TCGA-DY-A1DD 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DE                   TCGA-DY-A1DF 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DG                   TCGA-DY-A1H8 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EF-5830                   TCGA-EF-5831 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6506                   TCGA-EI-6507 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6508                   TCGA-EI-6509 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6510                   TCGA-EI-6511 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6512                   TCGA-EI-6513 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6514                   TCGA-EI-6881 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6882                   TCGA-EI-6883 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6884                   TCGA-EI-6885 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6917                   TCGA-EI-7002 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-7004                   TCGA-F5-6465 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6571                   TCGA-F5-6702 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6810                   TCGA-F5-6811 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-F5-6812                   TCGA-F5-6813 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6814                   TCGA-F5-6861 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-F5-6863                   TCGA-F5-6864 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-G5-6233                   TCGA-G5-6235 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-G5-6572                   TCGA-G5-6641 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-2690                   TCGA-AF-2691 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-2692                   TCGA-AF-2693 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-3400                   TCGA-AF-3911 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-6655                   TCGA-AF-6672 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3575                   TCGA-AG-3581 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3582                   TCGA-AG-3583 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3586                   TCGA-AG-3587 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3599                   TCGA-AG-3605 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3726                   TCGA-AG-3727 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3731                   TCGA-AG-3742 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3878                   TCGA-AG-3883 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3896                   TCGA-AG-3999 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-4001                   TCGA-AG-4007 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-4008                   TCGA-AG-4022 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A002                   TCGA-AG-A008 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A00C                   TCGA-AG-A00H 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A00Y                   TCGA-AG-A011 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A014                   TCGA-AG-A015 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A016                   TCGA-AG-A01J 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A01L                   TCGA-AG-A01N 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A01W                   TCGA-AG-A01Y 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A020                   TCGA-AG-A023 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A025                   TCGA-AG-A026 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A02G                   TCGA-AG-A02N 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A02X                   TCGA-AG-A032 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AH-6544                   TCGA-AH-6547 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AH-6643                   TCGA-AH-6644 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AH-6897                   TCGA-AH-6903 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BM-6198                   TCGA-CI-6619 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CI-6620                   TCGA-CI-6622 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CI-6623                   TCGA-CI-6624 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CL-4957                   TCGA-CL-5917 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CL-5918                   TCGA-DC-4745 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-4749                   TCGA-DC-5337 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-5869                   TCGA-DC-6154 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6155                   TCGA-DC-6156 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6157                   TCGA-DC-6158 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6160                   TCGA-DC-6681 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6682                   TCGA-DC-6683 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DT-5265                   TCGA-DY-A0XA 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DC                   TCGA-DY-A1DD 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DE                   TCGA-DY-A1DF 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DG                   TCGA-DY-A1H8 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EF-5830                   TCGA-EF-5831 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6506                   TCGA-EI-6507 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6508                   TCGA-EI-6509 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6510                   TCGA-EI-6511 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6512                   TCGA-EI-6513 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6514                   TCGA-EI-6881 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6882                   TCGA-EI-6883 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6884                   TCGA-EI-6885 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6917                   TCGA-EI-7002 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-7004                   TCGA-F5-6465 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6571                   TCGA-F5-6702 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6810                   TCGA-F5-6811 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-F5-6812                   TCGA-F5-6813 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6814                   TCGA-F5-6861 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-F5-6863                   TCGA-F5-6864 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-G5-6233                   TCGA-G5-6235 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-G5-6572                   TCGA-G5-6641 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AF-2687                   TCGA-AF-2689 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-2690                   TCGA-AF-2691 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-2692                   TCGA-AF-2693 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-3400                   TCGA-AF-3911 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-3913                   TCGA-AF-4110 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-5654                   TCGA-AF-6136 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AF-6655                   TCGA-AF-6672 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3575                   TCGA-AG-3581 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3582                   TCGA-AG-3583 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3586                   TCGA-AG-3587 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3599                   TCGA-AG-3605 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3726                   TCGA-AG-3727 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3731                   TCGA-AG-3742 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3878                   TCGA-AG-3883 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-3887                   TCGA-AG-3892 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3893                   TCGA-AG-3894 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-3896                   TCGA-AG-3999 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-4001                   TCGA-AG-4007 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-4008                   TCGA-AG-4022 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A002                   TCGA-AG-A008 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A00C                   TCGA-AG-A00H 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A00Y                   TCGA-AG-A011 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A014                   TCGA-AG-A015 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A016                   TCGA-AG-A01J 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A01L                   TCGA-AG-A01N 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A01W                   TCGA-AG-A01Y 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A020                   TCGA-AG-A023 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A025                   TCGA-AG-A026 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AG-A02G                   TCGA-AG-A02N 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AG-A02X                   TCGA-AG-A032 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AH-6544                   TCGA-AH-6547 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-AH-6643                   TCGA-AH-6644 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-AH-6897                   TCGA-AH-6903 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-BM-6198                   TCGA-CI-6619 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CI-6620                   TCGA-CI-6622 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-CI-6623                   TCGA-CI-6624 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CL-4957                   TCGA-CL-5917 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-CL-5918                   TCGA-DC-4745 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-4749                   TCGA-DC-5337 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-5869                   TCGA-DC-6154 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6155                   TCGA-DC-6156 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6157                   TCGA-DC-6158 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DC-6160                   TCGA-DC-6681 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-DC-6682                   TCGA-DC-6683 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DT-5265                   TCGA-DY-A0XA 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DC                   TCGA-DY-A1DD 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DE                   TCGA-DY-A1DF 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-DY-A1DG                   TCGA-DY-A1H8 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EF-5830                   TCGA-EF-5831 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6506                   TCGA-EI-6507 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6508                   TCGA-EI-6509 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6510                   TCGA-EI-6511 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6512                   TCGA-EI-6513 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6514                   TCGA-EI-6881 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6882                   TCGA-EI-6883 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-6884                   TCGA-EI-6885 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-EI-6917                   TCGA-EI-7002 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-EI-7004                   TCGA-F5-6465 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6571                   TCGA-F5-6702 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6810                   TCGA-F5-6811 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-F5-6812                   TCGA-F5-6813 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-F5-6814                   TCGA-F5-6861 
      "DEL PEAK 27(17P12) CNV" "DEL PEAK 27(17P12) WILD-TYPE" 
                  TCGA-F5-6863                   TCGA-F5-6864 
      "DEL PEAK 27(17P12) CNV"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-G5-6233                   TCGA-G5-6235 
"DEL PEAK 27(17P12) WILD-TYPE"       "DEL PEAK 27(17P12) CNV" 
                  TCGA-G5-6572                   TCGA-G5-6641 
"DEL PEAK 27(17P12) WILD-TYPE" "DEL PEAK 27(17P12) WILD-TYPE" 
[1] "hr=" "1.7"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 27(17P12) CNV         51   59
  DEL PEAK 27(17P12) WILD-TYPE   23   29
        clus
vv       DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE
  FEMALE                     51                           23
  MALE                       59                           29
D52V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 27(17P12) CNV         99    6
  DEL PEAK 27(17P12) WILD-TYPE   44    7
                                clus
vv                               DEL PEAK 27(17P12) CNV
  RECTAL ADENOCARCINOMA                              99
  RECTAL MUCINOUS ADENOCARCINOMA                      6
                                clus
vv                               DEL PEAK 27(17P12) WILD-TYPE
  RECTAL ADENOCARCINOMA                                    44
  RECTAL MUCINOUS ADENOCARCINOMA                            7
D52V5, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 27(17P12) CNV          4  106
  DEL PEAK 27(17P12) WILD-TYPE    2   50
     clus
vv    DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE
  NO                       4                            2
  YES                    106                           50
                              vv
clus                           M0 M1 M1A MX
  DEL PEAK 27(17P12) CNV       83 16   1  9
  DEL PEAK 27(17P12) WILD-TYPE 40  6   1  4
D52V6, multiclass
     clus
vv    DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE
  M0                      83                           40
  M1                      16                            6
  M1A                      1                            1
  MX                       9                            4
                              vv
clus                           N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 27(17P12) CNV       56 25   1   3   1 17   1   5  1
  DEL PEAK 27(17P12) WILD-TYPE 27 10   3   2   0  6   1   2  0
D52V7, multiclass
                              vv
clus                           R0 R1 R2 RX
  DEL PEAK 27(17P12) CNV       80  2  9  2
  DEL PEAK 27(17P12) WILD-TYPE 41  0  3  1
D52V8, multiclass
    clus
vv   DEL PEAK 27(17P12) CNV DEL PEAK 27(17P12) WILD-TYPE
  R0                     80                           41
  R1                      2                            0
  R2                      9                            3
  RX                      2                            1
D52V9, continuous
D52V10, continuous
                              vv
clus                           STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 27(17P12) CNV            16        5        30         2         1
  DEL PEAK 27(17P12) WILD-TYPE      14        3         8         0         1
                              vv
clus                           STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 27(17P12) CNV               4          5         15         10
  DEL PEAK 27(17P12) WILD-TYPE         1          4          8          3
                              vv
clus                           STAGE IV STAGE IVA
  DEL PEAK 27(17P12) CNV             12         7
  DEL PEAK 27(17P12) WILD-TYPE        5         2
D52V11, multiclass

Clustering(53) Variable = Del Peak 28(17p11.2)
D53V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 28(17P11.2) CNV       73  6
  DEL PEAK 28(17P11.2) WILD-TYPE 46  5
      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                            79                             51 
      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                             6                              5 
$`DEL PEAK 28(17P11.2) CNV`
TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3911 
       15.85        11.77        10.62        13.55        19.10        17.62 
TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 
       14.50         7.59         6.35        12.00         1.02         1.02 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        1.02         1.02         0.99         7.96         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.99         1.02         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01Y TCGA-AG-A023 TCGA-AG-A026 
       15.91        12.00        12.00        63.98        51.98         1.94 
TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6897 TCGA-BM-6198 TCGA-CI-6619 
       40.96         0.49         0.69         4.60        10.19         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-6155 
        6.02         6.94        13.97         7.99        11.01         7.36 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC 
        6.97        19.99         5.00         0.26       119.51        41.33 
TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 
       57.24       121.08        24.13        51.48         0.49         2.40 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
        2.17         8.22         0.46         0.66         6.90         7.10 
TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
        6.15         3.98         2.73         2.76         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6863 TCGA-F5-6864 
        0.85         2.17         0.66         0.53         0.76         0.46 
TCGA-G5-6235 
       47.70 

$`DEL PEAK 28(17P11.2) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-3400 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6672 TCGA-AG-3583 
       19.53        12.72        10.39         8.45         7.33         2.01 
TCGA-AG-3599 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3896 
        0.99         0.99         0.92         1.02         0.99         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01W 
        0.99        20.94        13.02         1.02         1.02        70.03 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 
       10.98        49.94        38.93        61.94        38.01         1.45 
TCGA-AH-6644 TCGA-AH-6903 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-5917 TCGA-DC-4745 
        0.72         1.81         9.37         4.70        60.00        10.98 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 
        9.99         5.03         8.98         6.97        27.91         5.92 
TCGA-DC-6682 TCGA-DY-A1H8 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6511 TCGA-EI-6882 
        3.98        32.58         7.63         0.16         3.98         3.55 
TCGA-EI-6885 TCGA-EI-6917 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6861 
        5.23         7.79         0.39         1.02         0.69         1.08 
TCGA-G5-6233 TCGA-G5-6572 TCGA-G5-6641 
       18.25        47.08        20.91 

      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                          0.26                           0.16 
      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                        121.08                          70.03 
      DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE 
                          6.15                           6.97 
[1] "0.3 - 121.1 (6.2)" "0.2 - 70.0 (7.0)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 28(17P11.2) CNV" "DEL PEAK 28(17P11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 28(17P11.2) CNV"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 28(17P11.2) WILD-TYPE"       "DEL PEAK 28(17P11.2) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 28(17P11.2) WILD-TYPE" "DEL PEAK 28(17P11.2) WILD-TYPE" 
[1] "hr=" "1.2"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(17P11.2) CNV         49   53
  DEL PEAK 28(17P11.2) WILD-TYPE   25   35
        clus
vv       DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE
  FEMALE                       49                             25
  MALE                         53                             35
D53V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(17P11.2) CNV         92    5
  DEL PEAK 28(17P11.2) WILD-TYPE   51    8
                                clus
vv                               DEL PEAK 28(17P11.2) CNV
  RECTAL ADENOCARCINOMA                                92
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               DEL PEAK 28(17P11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      51
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D53V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(17P11.2) CNV          3   99
  DEL PEAK 28(17P11.2) WILD-TYPE    3   57
     clus
vv    DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE
  NO                         3                              3
  YES                       99                             57
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 28(17P11.2) CNV       78 15   0  8
  DEL PEAK 28(17P11.2) WILD-TYPE 45  7   2  5
D53V6, multiclass
     clus
vv    DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE
  M0                        78                             45
  M1                        15                              7
  M1A                        0                              2
  MX                         8                              5
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 28(17P11.2) CNV       51 26   1   3   1 15   1   4  0
  DEL PEAK 28(17P11.2) WILD-TYPE 32  9   3   2   0  8   1   3  1
D53V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 28(17P11.2) CNV       74  2  8  2
  DEL PEAK 28(17P11.2) WILD-TYPE 47  0  4  1
D53V8, multiclass
    clus
vv   DEL PEAK 28(17P11.2) CNV DEL PEAK 28(17P11.2) WILD-TYPE
  R0                       74                             47
  R1                        2                              0
  R2                        8                              4
  RX                        2                              1
D53V9, continuous
D53V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 28(17P11.2) CNV            16        4        26         2         1
  DEL PEAK 28(17P11.2) WILD-TYPE      14        4        12         0         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 28(17P11.2) CNV               4          5         16          9
  DEL PEAK 28(17P11.2) WILD-TYPE         1          4          7          4
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 28(17P11.2) CNV             11         6
  DEL PEAK 28(17P11.2) WILD-TYPE        6         3
D53V11, multiclass

Clustering(54) Variable = Del Peak 29(17q25.3)
D54V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 29(17Q25.3) CNV        18   2
  DEL PEAK 29(17Q25.3) WILD-TYPE 101   9
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                            20                            110 
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                             2                              9 
$`DEL PEAK 29(17Q25.3) CNV`
TCGA-AF-4110 TCGA-AF-6136 TCGA-AG-3581 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A01L 
       14.50         7.59         1.02        13.91        25.94        12.00 
TCGA-AG-A026 TCGA-AG-A02X TCGA-AH-6643 TCGA-BM-6198 TCGA-DC-4749 TCGA-DC-6155 
        1.94        40.96         0.69        10.19        11.01         7.36 
TCGA-DC-6158 TCGA-DT-5265 TCGA-DY-A1DF TCGA-EF-5831 TCGA-EI-6508 TCGA-EI-6881 
        6.97         0.26        24.13         2.40         2.17         6.15 
TCGA-F5-6812 TCGA-F5-6814 
        0.66         0.53 

$`DEL PEAK 29(17Q25.3) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AF-6672 
       12.72        17.62        10.39         8.45         6.35         7.33 
TCGA-AG-3575 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
       12.00         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 
        1.02         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 
        1.02         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 
        1.02        12.00        70.03        63.98        10.98        51.98 
TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6547 
       49.94        38.93        61.94        38.01         0.49         1.45 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 
        0.72         4.60         1.81         6.02         6.02         6.94 
TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        9.37         4.70        13.97        60.00         7.99        10.98 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6160 
        9.99         5.03         8.98         6.97        27.91        19.99 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
        5.92         3.98         5.00       119.51        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 
      121.08        51.48        32.58         0.49         7.63         0.16 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 
        8.22         0.46         3.98         0.66         6.90         7.10 
TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 
        3.55         3.98         2.73         5.23         7.79         2.76 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
        2.04         3.39         0.85         2.17         0.39         1.02 
TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        0.69         1.08         0.76         0.46        18.25        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                          0.26                           0.16 
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                         40.96                         121.08 
      DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE 
                         7.165                          6.020 
[1] "0.3 - 41.0 (7.2)"  "0.2 - 121.1 (6.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 29(17Q25.3) WILD-TYPE"       "DEL PEAK 29(17Q25.3) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 29(17Q25.3) CNV" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
[1] "hr=" "3.9"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(17Q25.3) CNV          7   17
  DEL PEAK 29(17Q25.3) WILD-TYPE   67   71
        clus
vv       DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  FEMALE                        7                             67
  MALE                         17                             71
D54V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(17Q25.3) CNV         21    2
  DEL PEAK 29(17Q25.3) WILD-TYPE  122   11
                                clus
vv                               DEL PEAK 29(17Q25.3) CNV
  RECTAL ADENOCARCINOMA                                21
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               DEL PEAK 29(17Q25.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     122
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D54V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(17Q25.3) CNV          2   22
  DEL PEAK 29(17Q25.3) WILD-TYPE    4  134
     clus
vv    DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  NO                         2                              4
  YES                       22                            134
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 29(17Q25.3) CNV        21   0   0   2
  DEL PEAK 29(17Q25.3) WILD-TYPE 102  22   2  11
D54V6, multiclass
     clus
vv    DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  M0                        21                            102
  M1                         0                             22
  M1A                        0                              2
  MX                         2                             11
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 29(17Q25.3) CNV       14  3   1   2   0  2   0   2  0
  DEL PEAK 29(17Q25.3) WILD-TYPE 69 32   3   3   1 21   2   5  1
D54V7, multiclass
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 29(17Q25.3) CNV        20   1   0   1
  DEL PEAK 29(17Q25.3) WILD-TYPE 101   1  12   2
D54V8, multiclass
    clus
vv   DEL PEAK 29(17Q25.3) CNV DEL PEAK 29(17Q25.3) WILD-TYPE
  R0                       20                            101
  R1                        1                              1
  R2                        0                             12
  RX                        1                              2
D54V9, continuous
D54V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 29(17Q25.3) CNV             5        2         7         0         0
  DEL PEAK 29(17Q25.3) WILD-TYPE      25        6        31         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 29(17Q25.3) CNV               1          2          4          2
  DEL PEAK 29(17Q25.3) WILD-TYPE         4          7         19         11
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 29(17Q25.3) CNV              0         1
  DEL PEAK 29(17Q25.3) WILD-TYPE       17         8
D54V11, multiclass

Clustering(55) Variable = Del Peak 30(18q21.2)
D55V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 30(18Q21.2) CNV       104  10
  DEL PEAK 30(18Q21.2) WILD-TYPE  15   1
      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                           114                             16 
      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                            10                              1 
$`DEL PEAK 30(18Q21.2) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 
       12.72        17.62        10.39        14.50         7.59         6.35 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 
        7.33        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3587 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 
        1.02         0.99         7.96         0.95         1.02         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 
        1.02         0.92         0.99         1.02         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         0.99        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L 
       23.01        17.03        15.91         1.02         1.02        12.00 
TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        51.98         1.94 
TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 
       38.93        40.96        38.01         0.49         0.69         0.72 
TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 
        4.60         1.81        10.19         6.02         6.02         6.94 
TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
        9.37         4.70        13.97        60.00         7.99        10.98 
TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 
       11.01         9.99         5.03         8.98         7.36         6.97 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 
       27.91         6.97        19.99         5.92         3.98         5.00 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DF 
        0.26       119.51        41.33        57.24       121.08        24.13 
TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6509 
       51.48         0.49         2.40         7.63         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
        0.46         3.98         0.66         6.90         7.10         6.15 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 
        3.98         2.73         5.23         2.76         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        0.85         2.17         0.39         1.02         0.66         0.69 
TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        0.76         0.46        18.25        47.70        47.08        20.91 

$`DEL PEAK 30(18Q21.2) WILD-TYPE`
TCGA-AF-5654 TCGA-AG-3599 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 
        8.45         0.99         0.99         1.02         0.99        20.94 
TCGA-AG-A015 TCGA-AG-A025 TCGA-AG-A02N TCGA-AH-6547 TCGA-DY-A1H8 TCGA-EI-6507 
       13.02        49.94        61.94         1.45        32.58         0.16 
TCGA-EI-6882 TCGA-EI-6917 TCGA-F5-6814 TCGA-F5-6861 
        3.55         7.79         0.53         1.08 

      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                          0.26                           0.16 
      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                        121.08                          61.94 
      DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE 
                         6.625                          2.500 
[1] "0.3 - 121.1 (6.6)" "0.2 - 61.9 (2.5)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 30(18Q21.2) WILD-TYPE" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 30(18Q21.2) WILD-TYPE" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 30(18Q21.2) CNV" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 30(18Q21.2) WILD-TYPE"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 30(18Q21.2) WILD-TYPE" "DEL PEAK 30(18Q21.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "DEL PEAK 30(18Q21.2) CNV"       "DEL PEAK 30(18Q21.2) CNV" 
[1] "hr=" "1.6"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(18Q21.2) CNV         65   78
  DEL PEAK 30(18Q21.2) WILD-TYPE    9   10
        clus
vv       DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE
  FEMALE                       65                              9
  MALE                         78                             10
D55V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(18Q21.2) CNV        126   12
  DEL PEAK 30(18Q21.2) WILD-TYPE   17    1
                                clus
vv                               DEL PEAK 30(18Q21.2) CNV
  RECTAL ADENOCARCINOMA                               126
  RECTAL MUCINOUS ADENOCARCINOMA                       12
                                clus
vv                               DEL PEAK 30(18Q21.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      17
  RECTAL MUCINOUS ADENOCARCINOMA                              1
D55V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(18Q21.2) CNV          6  137
  DEL PEAK 30(18Q21.2) WILD-TYPE    0   19
     clus
vv    DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE
  NO                         6                              0
  YES                      137                             19
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 30(18Q21.2) CNV       105  22   2  12
  DEL PEAK 30(18Q21.2) WILD-TYPE  18   0   0   1
D55V6, multiclass
     clus
vv    DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE
  M0                       105                             18
  M1                        22                              0
  M1A                        2                              0
  MX                        12                              1
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 30(18Q21.2) CNV       68 33   4   5   1 22   1   7  1
  DEL PEAK 30(18Q21.2) WILD-TYPE 15  2   0   0   0  1   1   0  0
D55V7, multiclass
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 30(18Q21.2) CNV       104   2  12   3
  DEL PEAK 30(18Q21.2) WILD-TYPE  17   0   0   0
D55V8, multiclass
    clus
vv   DEL PEAK 30(18Q21.2) CNV DEL PEAK 30(18Q21.2) WILD-TYPE
  R0                      104                             17
  R1                        2                              0
  R2                       12                              0
  RX                        3                              0
D55V9, continuous
D55V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 30(18Q21.2) CNV            22        7        34         2         2
  DEL PEAK 30(18Q21.2) WILD-TYPE       8        1         4         0         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 30(18Q21.2) CNV               5          6         23         11
  DEL PEAK 30(18Q21.2) WILD-TYPE         0          3          0          2
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 30(18Q21.2) CNV             17         9
  DEL PEAK 30(18Q21.2) WILD-TYPE        0         0
D55V11, multiclass

Clustering(56) Variable = Del Peak 31(18q22.1)
D56V1, survival
                                sevent
clus2                              0   1
  DEL PEAK 31(18Q22.1) CNV       100  10
  DEL PEAK 31(18Q22.1) WILD-TYPE  19   1
      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                           110                             20 
      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                            10                              1 
$`DEL PEAK 31(18Q22.1) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 
       19.53        15.85        11.77        10.62        13.55        19.10 
TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6655 
       12.72        17.62        10.39        14.50         7.59         6.35 
TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
        7.33        12.00         1.02         1.02         2.01         1.02 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-3887 
        0.99         7.96         0.95         0.99         1.02         0.92 
TCGA-AG-3893 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         1.02         1.02         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        0.99        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       15.91         1.02         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        51.98         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-BM-6198 
       38.01         0.49         0.69         0.72         4.60        10.19 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 
        6.02         6.02         6.94         9.37         4.70        13.97 
TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 
       60.00         7.99        10.98        11.01         9.99         5.03 
TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 
        8.98         7.36         6.97        27.91         6.97        19.99 
TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
        5.92         3.98         5.00       119.51        41.33        57.24 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 
      121.08        24.13        51.48         0.49         2.40         7.63 
TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 
        2.17         8.22         0.46         3.98         0.66         6.90 
TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-7002 
        7.10         6.15         3.98         2.73         5.23         2.76 
TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 
        2.04         3.39         0.85         2.17         0.39         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 TCGA-G5-6235 
        0.66         0.69         0.76         0.46        18.25        47.70 
TCGA-G5-6572 TCGA-G5-6641 
       47.08        20.91 

$`DEL PEAK 31(18Q22.1) WILD-TYPE`
TCGA-AF-5654 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3731 TCGA-AG-3878 TCGA-AG-3892 
        8.45         1.02         0.99         1.02         0.99         1.02 
TCGA-AG-3894 TCGA-AG-A002 TCGA-AG-A015 TCGA-AG-A025 TCGA-AG-A02N TCGA-AH-6547 
        0.99        20.94        13.02        49.94        61.94         1.45 
TCGA-AH-6903 TCGA-DT-5265 TCGA-DY-A1H8 TCGA-EI-6507 TCGA-EI-6882 TCGA-EI-6917 
        1.81         0.26        32.58         0.16         3.55         7.79 
TCGA-F5-6814 TCGA-F5-6861 
        0.53         1.08 

      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                          0.39                           0.16 
      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                        121.08                          61.94 
      DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE 
                         6.955                          1.265 
[1] "0.4 - 121.1 (7.0)" "0.2 - 61.9 (1.3)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 31(18Q22.1) WILD-TYPE" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 31(18Q22.1) WILD-TYPE" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-AH-6897                     TCGA-AH-6903 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 31(18Q22.1) CNV" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 31(18Q22.1) WILD-TYPE"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 31(18Q22.1) WILD-TYPE" "DEL PEAK 31(18Q22.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
                    TCGA-G5-6572                     TCGA-G5-6641 
      "DEL PEAK 31(18Q22.1) CNV"       "DEL PEAK 31(18Q22.1) CNV" 
[1] "hr=" "1.6"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(18Q22.1) CNV         64   74
  DEL PEAK 31(18Q22.1) WILD-TYPE   10   14
        clus
vv       DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE
  FEMALE                       64                             10
  MALE                         74                             14
D56V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(18Q22.1) CNV        124   10
  DEL PEAK 31(18Q22.1) WILD-TYPE   19    3
                                clus
vv                               DEL PEAK 31(18Q22.1) CNV
  RECTAL ADENOCARCINOMA                               124
  RECTAL MUCINOUS ADENOCARCINOMA                       10
                                clus
vv                               DEL PEAK 31(18Q22.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      19
  RECTAL MUCINOUS ADENOCARCINOMA                              3
D56V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(18Q22.1) CNV          6  132
  DEL PEAK 31(18Q22.1) WILD-TYPE    0   24
     clus
vv    DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE
  NO                         6                              0
  YES                      132                             24
                                vv
clus                              M0  M1 M1A  MX
  DEL PEAK 31(18Q22.1) CNV       102  21   2  11
  DEL PEAK 31(18Q22.1) WILD-TYPE  21   1   0   2
D56V6, multiclass
     clus
vv    DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE
  M0                       102                             21
  M1                        21                              1
  M1A                        2                              0
  MX                        11                              2
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 31(18Q22.1) CNV       67 31   4   4   1 21   1   7  1
  DEL PEAK 31(18Q22.1) WILD-TYPE 16  4   0   1   0  2   1   0  0
D56V7, multiclass
                                vv
clus                              R0  R1  R2  RX
  DEL PEAK 31(18Q22.1) CNV       102   2  11   2
  DEL PEAK 31(18Q22.1) WILD-TYPE  19   0   1   1
D56V8, multiclass
    clus
vv   DEL PEAK 31(18Q22.1) CNV DEL PEAK 31(18Q22.1) WILD-TYPE
  R0                      102                             19
  R1                        2                              0
  R2                       11                              1
  RX                        2                              1
D56V9, continuous
D56V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 31(18Q22.1) CNV            22        6        34         2         2
  DEL PEAK 31(18Q22.1) WILD-TYPE       8        2         4         0         0
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 31(18Q22.1) CNV               3          6         22         11
  DEL PEAK 31(18Q22.1) WILD-TYPE         2          3          1          2
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 31(18Q22.1) CNV             16         9
  DEL PEAK 31(18Q22.1) WILD-TYPE        1         0
D56V11, multiclass

Clustering(57) Variable = Del Peak 32(19p13.3)
D57V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 32(19P13.3) CNV       28  3
  DEL PEAK 32(19P13.3) WILD-TYPE 91  8
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                            31                             99 
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                             3                              8 
$`DEL PEAK 32(19P13.3) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-4110 TCGA-AG-3575 TCGA-AG-3582 TCGA-AG-3587 
       19.53        15.85        14.50        12.00         1.02         1.02 
TCGA-AG-3893 TCGA-AG-4008 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01Y TCGA-AG-A020 
        0.99         1.02        15.91         1.02        63.98        10.98 
TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6624 TCGA-CL-4957 TCGA-DC-4749 TCGA-DC-5869 
        6.02         6.02         4.70        13.97        11.01         5.03 
TCGA-DC-6155 TCGA-DC-6158 TCGA-DT-5265 TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG 
        7.36         6.97         0.26       121.08        24.13        51.48 
TCGA-EI-6509 TCGA-EI-6513 TCGA-EI-6885 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 
        8.22         6.90         5.23         0.85         2.17         0.39 
TCGA-G5-6233 
       18.25 

$`DEL PEAK 32(19P13.3) WILD-TYPE`
TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 
       11.77        10.62        13.55        19.10        12.72        17.62 
TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3581 
       10.39         8.45         7.59         6.35         7.33         1.02 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 
        2.01         1.02         0.99         0.99         7.96         0.95 
TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.99         0.99         1.02         0.92         1.02 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 
        0.99         1.02         1.02         1.02         1.02         0.99 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A015 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A023 
       13.02         1.02        12.00        12.00        70.03        51.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 
        0.49         1.45         0.69         0.72         4.60         1.81 
TCGA-BM-6198 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 
       10.19         6.94         9.37        60.00         7.99        10.98 
TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6160 TCGA-DC-6681 
        9.99         8.98         6.97        27.91        19.99         5.92 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1H8 
        3.98         5.00       119.51        41.33        57.24        32.58 
TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6510 
        0.49         2.40         7.63         0.16         2.17         0.46 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        3.98         0.66         7.10         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6465 TCGA-F5-6811 
        2.73         7.79         2.76         2.04         3.39         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.66         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       47.70        47.08        20.91 

      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                          0.26                           0.16 
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE 
                          6.97                           6.02 
[1] "0.3 - 121.1 (7.0)" "0.2 - 119.5 (6.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-CI-6620                     TCGA-CI-6622 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-4749                     TCGA-DC-5337 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 32(19P13.3) WILD-TYPE"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 32(19P13.3) CNV"       "DEL PEAK 32(19P13.3) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 32(19P13.3) CNV" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
[1] "hr=" "1.2"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(19P13.3) CNV         17   21
  DEL PEAK 32(19P13.3) WILD-TYPE   57   67
        clus
vv       DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  FEMALE                       17                             57
  MALE                         21                             67
D57V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(19P13.3) CNV         34    2
  DEL PEAK 32(19P13.3) WILD-TYPE  109   11
                                clus
vv                               DEL PEAK 32(19P13.3) CNV
  RECTAL ADENOCARCINOMA                                34
  RECTAL MUCINOUS ADENOCARCINOMA                        2
                                clus
vv                               DEL PEAK 32(19P13.3) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     109
  RECTAL MUCINOUS ADENOCARCINOMA                             11
D57V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(19P13.3) CNV          1   37
  DEL PEAK 32(19P13.3) WILD-TYPE    5  119
     clus
vv    DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  NO                         1                              5
  YES                       37                            119
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 32(19P13.3) CNV       29  8   0  1
  DEL PEAK 32(19P13.3) WILD-TYPE 94 14   2 12
D57V6, multiclass
     clus
vv    DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  M0                        29                             94
  M1                         8                             14
  M1A                        0                              2
  MX                         1                             12
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 32(19P13.3) CNV       17  9   1   2   1  6   0   2  0
  DEL PEAK 32(19P13.3) WILD-TYPE 66 26   3   3   0 17   2   5  1
D57V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 32(19P13.3) CNV       26  0  3  1
  DEL PEAK 32(19P13.3) WILD-TYPE 95  2  9  2
D57V8, multiclass
    clus
vv   DEL PEAK 32(19P13.3) CNV DEL PEAK 32(19P13.3) WILD-TYPE
  R0                       26                             95
  R1                        0                              2
  R2                        3                              9
  RX                        1                              2
D57V9, continuous
D57V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 32(19P13.3) CNV             6        3         8         0         1
  DEL PEAK 32(19P13.3) WILD-TYPE      24        5        30         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 32(19P13.3) CNV               2          2          4          3
  DEL PEAK 32(19P13.3) WILD-TYPE         3          7         19         10
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 32(19P13.3) CNV              5         4
  DEL PEAK 32(19P13.3) WILD-TYPE       12         5
D57V11, multiclass

Clustering(58) Variable = Del Peak 33(20p12.1)
D58V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 33(20P12.1) CNV       39  7
  DEL PEAK 33(20P12.1) WILD-TYPE 80  4
      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                            46                             84 
      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                             7                              4 
$`DEL PEAK 33(20P12.1) CNV`
TCGA-AF-2689 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3726 
       15.85        10.39         1.02         1.02         2.01         7.96 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 
        0.95         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-A008 TCGA-AG-A014 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       13.91        15.91         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02G TCGA-AH-6547 TCGA-AH-6643 TCGA-CI-6624 
       63.98         1.94        38.93         1.45         0.69         4.70 
TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-6154 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 
       60.00        10.98         8.98         6.97        19.99         3.98 
TCGA-DC-6683 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5831 
        5.00        41.33        57.24        24.13        32.58         2.40 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7004 
        3.98         0.66         6.15         3.98         2.73         2.04 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6864 TCGA-G5-6641 
        0.85         2.17         0.46        20.91 

$`DEL PEAK 33(20P12.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       17.62        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3575 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3731 
       12.00         1.02         1.02         0.99         0.99         1.02 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        20.94         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       17.03        13.02         1.02        10.98        51.98        49.94 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6644 TCGA-AH-6897 
       61.94        40.96        38.01         0.49         0.72         4.60 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 
        1.81        10.19         6.02         6.02         6.94         9.37 
TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 
       13.97         7.99        11.01         9.99         5.03         7.36 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DE 
        6.97        27.91         5.92         0.26       119.51       121.08 
TCGA-DY-A1DG TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
       51.48         0.49         7.63         0.16         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 
        0.46         6.90         7.10         3.55         5.23         7.79 
TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        2.76         3.39         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.76        18.25        47.70        47.08 

      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                          0.46                           0.16 
      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                         70.03                         121.08 
      DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE 
                         4.340                          6.955 
[1] "0.5 - 70.0 (4.3)"  "0.2 - 121.1 (7.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 33(20P12.1) CNV" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 33(20P12.1) CNV"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 33(20P12.1) WILD-TYPE" "DEL PEAK 33(20P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 33(20P12.1) WILD-TYPE"       "DEL PEAK 33(20P12.1) CNV" 
[1] "hr=" "2.5"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(20P12.1) CNV         31   29
  DEL PEAK 33(20P12.1) WILD-TYPE   43   59
        clus
vv       DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE
  FEMALE                       31                             43
  MALE                         29                             59
D58V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(20P12.1) CNV         55    5
  DEL PEAK 33(20P12.1) WILD-TYPE   88    8
                                clus
vv                               DEL PEAK 33(20P12.1) CNV
  RECTAL ADENOCARCINOMA                                55
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               DEL PEAK 33(20P12.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      88
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D58V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(20P12.1) CNV          0   60
  DEL PEAK 33(20P12.1) WILD-TYPE    6   96
     clus
vv    DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE
  NO                         0                              6
  YES                       60                             96
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 33(20P12.1) CNV       47 10   0  3
  DEL PEAK 33(20P12.1) WILD-TYPE 76 12   2 10
D58V6, multiclass
     clus
vv    DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE
  M0                        47                             76
  M1                        10                             12
  M1A                        0                              2
  MX                         3                             10
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 33(20P12.1) CNV       30 14   2   1   0 10   0   3  0
  DEL PEAK 33(20P12.1) WILD-TYPE 53 21   2   4   1 13   2   4  1
D58V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 33(20P12.1) CNV       45  1  7  1
  DEL PEAK 33(20P12.1) WILD-TYPE 76  1  5  2
D58V8, multiclass
    clus
vv   DEL PEAK 33(20P12.1) CNV DEL PEAK 33(20P12.1) WILD-TYPE
  R0                       45                             76
  R1                        1                              1
  R2                        7                              5
  RX                        1                              2
D58V9, continuous
D58V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 33(20P12.1) CNV             9        5        13         0         1
  DEL PEAK 33(20P12.1) WILD-TYPE      21        3        25         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 33(20P12.1) CNV               1          4          8          7
  DEL PEAK 33(20P12.1) WILD-TYPE         4          5         15          6
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 33(20P12.1) CNV              7         3
  DEL PEAK 33(20P12.1) WILD-TYPE       10         6
D58V11, multiclass

Clustering(59) Variable = Del Peak 34(20p12.1)
D59V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 34(20P12.1) CNV       39  7
  DEL PEAK 34(20P12.1) WILD-TYPE 80  4
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                            46                             84 
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                             7                              4 
$`DEL PEAK 34(20P12.1) CNV`
TCGA-AF-2689 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3726 
       15.85        10.39         1.02         1.02         2.01         7.96 
TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3883 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4022 
        0.95         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-A008 TCGA-AG-A014 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
       13.91        15.91         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A02G TCGA-AH-6547 TCGA-AH-6643 TCGA-CI-6624 
       63.98         1.94        38.93         1.45         0.69         4.70 
TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-6154 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 
       60.00        10.98         8.98         6.97        19.99         3.98 
TCGA-DC-6683 TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1H8 TCGA-EF-5831 
        5.00        41.33        57.24        24.13        32.58         2.40 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6881 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-7004 
        3.98         0.66         6.15         3.98         2.73         2.04 
TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6864 TCGA-G5-6641 
        0.85         2.17         0.46        20.91 

$`DEL PEAK 34(20P12.1) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 
       19.53        11.77        10.62        13.55        19.10        12.72 
TCGA-AF-3911 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       17.62        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3575 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3605 TCGA-AG-3731 
       12.00         1.02         1.02         0.99         0.99         1.02 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        20.94         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 
       17.03        13.02         1.02        10.98        51.98        49.94 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AH-6544 TCGA-AH-6644 TCGA-AH-6897 
       61.94        40.96        38.01         0.49         0.72         4.60 
TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 
        1.81        10.19         6.02         6.02         6.94         9.37 
TCGA-CL-4957 TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6155 
       13.97         7.99        11.01         9.99         5.03         7.36 
TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DE 
        6.97        27.91         5.92         0.26       119.51       121.08 
TCGA-DY-A1DG TCGA-EF-5830 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 
       51.48         0.49         7.63         0.16         2.17         8.22 
TCGA-EI-6510 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6885 TCGA-EI-6917 
        0.46         6.90         7.10         3.55         5.23         7.79 
TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6813 
        2.76         3.39         0.39         1.02         0.66         0.69 
TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 
        0.53         1.08         0.76        18.25        47.70        47.08 

      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                          0.46                           0.16 
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                         70.03                         121.08 
      DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE 
                         4.340                          6.955 
[1] "0.5 - 70.0 (4.3)"  "0.2 - 121.1 (7.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-6155                     TCGA-DC-6156 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-EI-6884                     TCGA-EI-6885 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 34(20P12.1) CNV" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 34(20P12.1) CNV"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-F5-6810                     TCGA-F5-6811 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 34(20P12.1) WILD-TYPE"       "DEL PEAK 34(20P12.1) CNV" 
[1] "hr=" "2.5"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(20P12.1) CNV         31   29
  DEL PEAK 34(20P12.1) WILD-TYPE   43   59
        clus
vv       DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  FEMALE                       31                             43
  MALE                         29                             59
D59V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(20P12.1) CNV         55    5
  DEL PEAK 34(20P12.1) WILD-TYPE   88    8
                                clus
vv                               DEL PEAK 34(20P12.1) CNV
  RECTAL ADENOCARCINOMA                                55
  RECTAL MUCINOUS ADENOCARCINOMA                        5
                                clus
vv                               DEL PEAK 34(20P12.1) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      88
  RECTAL MUCINOUS ADENOCARCINOMA                              8
D59V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(20P12.1) CNV          0   60
  DEL PEAK 34(20P12.1) WILD-TYPE    6   96
     clus
vv    DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  NO                         0                              6
  YES                       60                             96
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 34(20P12.1) CNV       47 10   0  3
  DEL PEAK 34(20P12.1) WILD-TYPE 76 12   2 10
D59V6, multiclass
     clus
vv    DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  M0                        47                             76
  M1                        10                             12
  M1A                        0                              2
  MX                         3                             10
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 34(20P12.1) CNV       30 14   2   1   0 10   0   3  0
  DEL PEAK 34(20P12.1) WILD-TYPE 53 21   2   4   1 13   2   4  1
D59V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 34(20P12.1) CNV       45  1  7  1
  DEL PEAK 34(20P12.1) WILD-TYPE 76  1  5  2
D59V8, multiclass
    clus
vv   DEL PEAK 34(20P12.1) CNV DEL PEAK 34(20P12.1) WILD-TYPE
  R0                       45                             76
  R1                        1                              1
  R2                        7                              5
  RX                        1                              2
D59V9, continuous
D59V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 34(20P12.1) CNV             9        5        13         0         1
  DEL PEAK 34(20P12.1) WILD-TYPE      21        3        25         2         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 34(20P12.1) CNV               1          4          8          7
  DEL PEAK 34(20P12.1) WILD-TYPE         4          5         15          6
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 34(20P12.1) CNV              7         3
  DEL PEAK 34(20P12.1) WILD-TYPE       10         6
D59V11, multiclass

Clustering(60) Variable = Del Peak 35(21q11.2)
D60V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 35(21Q11.2) CNV       50  6
  DEL PEAK 35(21Q11.2) WILD-TYPE 69  5
      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                            56                             74 
      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                             6                              5 
$`DEL PEAK 35(21Q11.2) CNV`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 
       19.53        15.85        11.77        19.10        14.50         7.59 
TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3575 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 
        6.35         7.33        12.00         1.02         1.02         1.02 
TCGA-AG-3599 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W 
        0.99         1.02         1.02        12.00        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       63.98        10.98         1.94        38.93        61.94        40.96 
TCGA-AH-6544 TCGA-AH-6643 TCGA-CI-6624 TCGA-CL-4957 TCGA-DC-4745 TCGA-DC-6155 
        0.49         0.69         4.70        13.97        10.98         7.36 
TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DD 
       27.91         6.97         3.98         5.00       119.51        57.24 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 
       51.48        32.58         0.49         2.40         7.63         2.17 
TCGA-EI-6511 TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6881 TCGA-EI-7002 TCGA-EI-7004 
        3.98         0.66         6.90         6.15         2.76         2.04 
TCGA-F5-6571 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 TCGA-F5-6814 TCGA-F5-6863 
        0.85         0.39         1.02         0.66         0.53         0.76 
TCGA-G5-6233 TCGA-G5-6641 
       18.25        20.91 

$`DEL PEAK 35(21Q11.2) WILD-TYPE`
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-5654 
       10.62        13.55        12.72        17.62        10.39         8.45 
TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 
        2.01         1.02         0.99         7.96         0.95         1.02 
TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4022 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         0.99        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A032 
       13.02         1.02         1.02        51.98        49.94        38.01 
TCGA-AH-6547 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 
        1.45         0.72         4.60         1.81        10.19         6.02 
TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4749 
        6.02         6.94         9.37        60.00         7.99        11.01 
TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6160 TCGA-DC-6681 
        9.99         5.03         8.98         6.97        19.99         5.92 
TCGA-DT-5265 TCGA-DY-A1DC TCGA-DY-A1DE TCGA-DY-A1DF TCGA-EI-6507 TCGA-EI-6509 
        0.26        41.33       121.08        24.13         0.16         8.22 
TCGA-EI-6510 TCGA-EI-6514 TCGA-EI-6882 TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 
        0.46         7.10         3.55         3.98         2.73         5.23 
TCGA-EI-6917 TCGA-F5-6465 TCGA-F5-6702 TCGA-F5-6813 TCGA-F5-6861 TCGA-F5-6864 
        7.79         3.39         2.17         0.69         1.08         0.46 
TCGA-G5-6235 TCGA-G5-6572 
       47.70        47.08 

      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                          0.39                           0.16 
      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                        119.51                         121.08 
      DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE 
                         6.935                          6.020 
[1] "0.4 - 119.5 (6.9)" "0.2 - 121.1 (6.0)"
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-2687                     TCGA-AF-2689 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-2690                     TCGA-AF-2691 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AF-6655                     TCGA-AF-6672 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3582                     TCGA-AG-3583 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-3599                     TCGA-AG-3605 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-4008                     TCGA-AG-4022 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A020                     TCGA-AG-A023 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-CL-4957                     TCGA-CL-5917 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6157                     TCGA-DC-6158 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DC-6160                     TCGA-DC-6681 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6506                     TCGA-EI-6507 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6512                     TCGA-EI-6513 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 35(21Q11.2) WILD-TYPE" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 35(21Q11.2) CNV"       "DEL PEAK 35(21Q11.2) CNV" 
                    TCGA-F5-6812                     TCGA-F5-6813 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
      "DEL PEAK 35(21Q11.2) CNV" "DEL PEAK 35(21Q11.2) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 35(21Q11.2) WILD-TYPE"       "DEL PEAK 35(21Q11.2) CNV" 
[1] "hr=" "1"  
D60V2, continuous
D60V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(21Q11.2) CNV         30   40
  DEL PEAK 35(21Q11.2) WILD-TYPE   44   48
        clus
vv       DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE
  FEMALE                       30                             44
  MALE                         40                             48
D60V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(21Q11.2) CNV         63    3
  DEL PEAK 35(21Q11.2) WILD-TYPE   80   10
                                clus
vv                               DEL PEAK 35(21Q11.2) CNV
  RECTAL ADENOCARCINOMA                                63
  RECTAL MUCINOUS ADENOCARCINOMA                        3
                                clus
vv                               DEL PEAK 35(21Q11.2) WILD-TYPE
  RECTAL ADENOCARCINOMA                                      80
  RECTAL MUCINOUS ADENOCARCINOMA                             10
D60V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(21Q11.2) CNV          3   67
  DEL PEAK 35(21Q11.2) WILD-TYPE    3   89
     clus
vv    DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE
  NO                         3                              3
  YES                       67                             89
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 35(21Q11.2) CNV       55  9   0  6
  DEL PEAK 35(21Q11.2) WILD-TYPE 68 13   2  7
D60V6, multiclass
     clus
vv    DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE
  M0                        55                             68
  M1                         9                             13
  M1A                        0                              2
  MX                         6                              7
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 35(21Q11.2) CNV       33 19   2   3   0  9   0   4  0
  DEL PEAK 35(21Q11.2) WILD-TYPE 50 16   2   2   1 14   2   3  1
D60V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 35(21Q11.2) CNV       52  1  4  0
  DEL PEAK 35(21Q11.2) WILD-TYPE 69  1  8  3
D60V8, multiclass
    clus
vv   DEL PEAK 35(21Q11.2) CNV DEL PEAK 35(21Q11.2) WILD-TYPE
  R0                       52                             69
  R1                        1                              1
  R2                        4                              8
  RX                        0                              3
D60V9, continuous
D60V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 35(21Q11.2) CNV            10        6        15         1         1
  DEL PEAK 35(21Q11.2) WILD-TYPE      20        2        23         1         1
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 35(21Q11.2) CNV               3          6         12          3
  DEL PEAK 35(21Q11.2) WILD-TYPE         2          3         11         10
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 35(21Q11.2) CNV              8         3
  DEL PEAK 35(21Q11.2) WILD-TYPE        9         6
D60V11, multiclass

Clustering(61) Variable = Del Peak 36(22q13.31)
D61V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 36(22Q13.31) CNV       44  6
  DEL PEAK 36(22Q13.31) WILD-TYPE 75  5
      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                             50                              80 
      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                              6                               5 
$`DEL PEAK 36(22Q13.31) CNV`
TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6136 TCGA-AF-6672 TCGA-AG-3575 
       13.55        19.10        14.50         7.59         7.33        12.00 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3731 TCGA-AG-3883 TCGA-AG-3999 
        1.02         1.02         2.01         1.02         1.02         1.02 
TCGA-AG-4001 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A01L TCGA-AG-A020 TCGA-AG-A026 
        1.02        25.94        23.01        12.00        10.98         1.94 
TCGA-AG-A02G TCGA-AG-A02X TCGA-AH-6544 TCGA-AH-6644 TCGA-BM-6198 TCGA-CI-6619 
       38.93        40.96         0.49         0.72        10.19         6.02 
TCGA-CI-6624 TCGA-CL-4957 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5869 TCGA-DC-6155 
        4.70        13.97        10.98        11.01         5.03         7.36 
TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6682 TCGA-DC-6683 TCGA-DY-A1DC TCGA-DY-A1DE 
        6.97        19.99         3.98         5.00        41.33       121.08 
TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6506 TCGA-EI-6508 TCGA-EI-6512 
       51.48        32.58         2.40         7.63         2.17         0.66 
TCGA-EI-6881 TCGA-EI-7002 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6812 TCGA-F5-6863 
        6.15         2.76         2.17         0.39         0.66         0.76 
TCGA-G5-6233 TCGA-G5-6641 
       18.25        20.91 

$`DEL PEAK 36(22Q13.31) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 
       19.53        15.85        11.77        10.62        12.72        17.62 
TCGA-AF-3913 TCGA-AF-5654 TCGA-AF-6655 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
       10.39         8.45         6.35         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3887 
        0.99         7.96         0.95         0.99         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 
        0.99        20.94        13.91         6.02        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y 
       13.02         1.02         1.02        12.00        70.03        63.98 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 
       51.98        49.94        61.94        38.01         1.45         0.69 
TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6623 TCGA-CL-5917 
        4.60         1.81         6.02         6.94         9.37        60.00 
TCGA-CL-5918 TCGA-DC-5337 TCGA-DC-6154 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6681 
        7.99         9.99         8.98         6.97        27.91         5.92 
TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DD TCGA-DY-A1DF TCGA-EF-5830 TCGA-EI-6507 
        0.26       119.51        57.24        24.13         0.49         0.16 
TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6882 
        8.22         0.46         3.98         6.90         7.10         3.55 
TCGA-EI-6883 TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6465 
        3.98         2.73         5.23         7.79         2.04         3.39 
TCGA-F5-6571 TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6864 
        0.85         1.02         0.69         0.53         1.08         0.46 
TCGA-G5-6235 TCGA-G5-6572 
       47.70        47.08 

      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                           0.39                            0.16 
      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                         121.08                          119.51 
      DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE 
                           7.15                            6.02 
[1] "0.4 - 121.1 (7.2)" "0.2 - 119.5 (6.0)"
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-2687                      TCGA-AF-2689 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2690                      TCGA-AF-2691 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-2692                      TCGA-AF-2693 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-3400                      TCGA-AF-3911 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AF-3913                      TCGA-AF-4110 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-5654                      TCGA-AF-6136 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AF-6655                      TCGA-AF-6672 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3575                      TCGA-AG-3581 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3582                      TCGA-AG-3583 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3586                      TCGA-AG-3587 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3599                      TCGA-AG-3605 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3726                      TCGA-AG-3727 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3731                      TCGA-AG-3742 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3878                      TCGA-AG-3883 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-3887                      TCGA-AG-3892 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3893                      TCGA-AG-3894 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-3896                      TCGA-AG-3999 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-4001                      TCGA-AG-4007 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-4008                      TCGA-AG-4022 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A002                      TCGA-AG-A008 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A00C                      TCGA-AG-A00H 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A00Y                      TCGA-AG-A011 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A014                      TCGA-AG-A015 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A016                      TCGA-AG-A01J 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01L                      TCGA-AG-A01N 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A01W                      TCGA-AG-A01Y 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A020                      TCGA-AG-A023 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A025                      TCGA-AG-A026 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AG-A02G                      TCGA-AG-A02N 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AG-A02X                      TCGA-AG-A032 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6544                      TCGA-AH-6547 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-AH-6643                      TCGA-AH-6644 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-AH-6897                      TCGA-AH-6903 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-BM-6198                      TCGA-CI-6619 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-CI-6620                      TCGA-CI-6622 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CI-6623                      TCGA-CI-6624 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-CL-4957                      TCGA-CL-5917 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-CL-5918                      TCGA-DC-4745 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-4749                      TCGA-DC-5337 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-5869                      TCGA-DC-6154 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6155                      TCGA-DC-6156 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6157                      TCGA-DC-6158 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DC-6160                      TCGA-DC-6681 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DC-6682                      TCGA-DC-6683 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-DT-5265                      TCGA-DY-A0XA 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DC                      TCGA-DY-A1DD 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DE                      TCGA-DY-A1DF 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-DY-A1DG                      TCGA-DY-A1H8 
      "DEL PEAK 36(22Q13.31) CNV"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EF-5830                      TCGA-EF-5831 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6506                      TCGA-EI-6507 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6508                      TCGA-EI-6509 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6510                      TCGA-EI-6511 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6512                      TCGA-EI-6513 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6514                      TCGA-EI-6881 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-6882                      TCGA-EI-6883 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6884                      TCGA-EI-6885 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-EI-6917                      TCGA-EI-7002 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-EI-7004                      TCGA-F5-6465 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6571                      TCGA-F5-6702 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
                     TCGA-F5-6810                      TCGA-F5-6811 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6812                      TCGA-F5-6813 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6814                      TCGA-F5-6861 
"DEL PEAK 36(22Q13.31) WILD-TYPE" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-F5-6863                      TCGA-F5-6864 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6233                      TCGA-G5-6235 
      "DEL PEAK 36(22Q13.31) CNV" "DEL PEAK 36(22Q13.31) WILD-TYPE" 
                     TCGA-G5-6572                      TCGA-G5-6641 
"DEL PEAK 36(22Q13.31) WILD-TYPE"       "DEL PEAK 36(22Q13.31) CNV" 
[1] "hr=" "3.1"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 36(22Q13.31) CNV         27   39
  DEL PEAK 36(22Q13.31) WILD-TYPE   47   49
        clus
vv       DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE
  FEMALE                        27                              47
  MALE                          39                              49
D61V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 36(22Q13.31) CNV         59    4
  DEL PEAK 36(22Q13.31) WILD-TYPE   84    9
                                clus
vv                               DEL PEAK 36(22Q13.31) CNV
  RECTAL ADENOCARCINOMA                                 59
  RECTAL MUCINOUS ADENOCARCINOMA                         4
                                clus
vv                               DEL PEAK 36(22Q13.31) WILD-TYPE
  RECTAL ADENOCARCINOMA                                       84
  RECTAL MUCINOUS ADENOCARCINOMA                               9
D61V5, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 36(22Q13.31) CNV          3   63
  DEL PEAK 36(22Q13.31) WILD-TYPE    3   93
     clus
vv    DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE
  NO                          3                               3
  YES                        63                              93
                                 vv
clus                              M0 M1 M1A MX
  DEL PEAK 36(22Q13.31) CNV       46 12   0  7
  DEL PEAK 36(22Q13.31) WILD-TYPE 77 10   2  6
D61V6, multiclass
     clus
vv    DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE
  M0                         46                              77
  M1                         12                              10
  M1A                         0                               2
  MX                          7                               6
                                 vv
clus                              N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 36(22Q13.31) CNV       27 20   3   3   1  9   0   2  1
  DEL PEAK 36(22Q13.31) WILD-TYPE 56 15   1   2   0 14   2   5  0
D61V7, multiclass
                                 vv
clus                              R0 R1 R2 RX
  DEL PEAK 36(22Q13.31) CNV       45  1  7  0
  DEL PEAK 36(22Q13.31) WILD-TYPE 76  1  5  3
D61V8, multiclass
    clus
vv   DEL PEAK 36(22Q13.31) CNV DEL PEAK 36(22Q13.31) WILD-TYPE
  R0                        45                              76
  R1                         1                               1
  R2                         7                               5
  RX                         0                               3
D61V9, continuous
D61V10, continuous
                                 vv
clus                              STAGE I STAGE II STAGE IIA STAGE IIB
  DEL PEAK 36(22Q13.31) CNV             9        2        16         0
  DEL PEAK 36(22Q13.31) WILD-TYPE      21        6        22         2
                                 vv
clus                              STAGE IIC STAGE III STAGE IIIA STAGE IIIB
  DEL PEAK 36(22Q13.31) CNV               1         3          5         13
  DEL PEAK 36(22Q13.31) WILD-TYPE         1         2          4         10
                                 vv
clus                              STAGE IIIC STAGE IV STAGE IVA
  DEL PEAK 36(22Q13.31) CNV                2       10         3
  DEL PEAK 36(22Q13.31) WILD-TYPE         11        7         6
D61V11, multiclass

Clustering(62) Variable = Del Peak 37(Xp22.33)
D62V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 37(XP22.33) CNV       22  2
  DEL PEAK 37(XP22.33) WILD-TYPE 97  9
      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                            24                            106 
      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                             2                              9 
$`DEL PEAK 37(XP22.33) CNV`
TCGA-AF-2692 TCGA-AF-2693 TCGA-AG-3575 TCGA-AG-3893 TCGA-AG-4007 TCGA-AG-A008 
       13.55        19.10        12.00         0.99         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A02G TCGA-AG-A02X TCGA-AH-6544 TCGA-BM-6198 
        6.02        25.94        38.93        40.96         0.49        10.19 
TCGA-CI-6623 TCGA-CL-5917 TCGA-DC-4745 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6160 
        9.37        60.00        10.98         7.36         6.97        19.99 
TCGA-DY-A1DE TCGA-DY-A1H8 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 
      121.08        32.58         2.76         3.39         0.85         0.39 

$`DEL PEAK 37(XP22.33) WILD-TYPE`
TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3911 
       19.53        15.85        11.77        10.62        12.72        17.62 
TCGA-AF-3913 TCGA-AF-4110 TCGA-AF-5654 TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 
       10.39        14.50         8.45         7.59         6.35         7.33 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3599 
        1.02         1.02         2.01         1.02         1.02         0.99 
TCGA-AG-3605 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-3878 
        0.99         7.96         0.95         1.02         0.99         0.99 
TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3999 
        1.02         0.92         1.02         0.99         1.02         1.02 
TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A00Y TCGA-AG-A011 
        1.02         1.02         0.99        20.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N 
       15.91        13.02         1.02         1.02        12.00        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 
       70.03        63.98        10.98        51.98        49.94         1.94 
TCGA-AG-A02N TCGA-AG-A032 TCGA-AH-6547 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 
       61.94        38.01         1.45         0.69         0.72         4.60 
TCGA-AH-6903 TCGA-CI-6619 TCGA-CI-6620 TCGA-CI-6622 TCGA-CI-6624 TCGA-CL-4957 
        1.81         6.02         6.02         6.94         4.70        13.97 
TCGA-CL-5918 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6157 
        7.99        11.01         9.99         5.03         8.98        27.91 
TCGA-DC-6158 TCGA-DC-6681 TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA 
        6.97         5.92         3.98         5.00         0.26       119.51 
TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DF TCGA-DY-A1DG TCGA-EF-5830 TCGA-EF-5831 
       41.33        57.24        24.13        51.48         0.49         2.40 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
        7.63         0.16         2.17         8.22         0.46         3.98 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
        0.66         6.90         7.10         6.15         3.55         3.98 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6702 TCGA-F5-6811 
        2.73         5.23         7.79         2.04         2.17         1.02 
TCGA-F5-6812 TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 
        0.66         0.69         0.53         1.08         0.76         0.46 
TCGA-G5-6233 TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
       18.25        47.70        47.08        20.91 

      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                          0.39                           0.16 
      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                        121.08                         119.51 
      DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE 
                        10.585                          5.575 
[1] "0.4 - 121.1 (10.6)" "0.2 - 119.5 (5.6)" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2687                     TCGA-AF-2689 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2690                     TCGA-AF-2691 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-2692                     TCGA-AF-2693 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AF-3400                     TCGA-AF-3911 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-3913                     TCGA-AF-4110 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-5654                     TCGA-AF-6136 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AF-6655                     TCGA-AF-6672 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3575                     TCGA-AG-3581 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3582                     TCGA-AG-3583 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3586                     TCGA-AG-3587 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3599                     TCGA-AG-3605 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3726                     TCGA-AG-3727 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3731                     TCGA-AG-3742 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3878                     TCGA-AG-3883 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3887                     TCGA-AG-3892 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3893                     TCGA-AG-3894 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-3896                     TCGA-AG-3999 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-4001                     TCGA-AG-4007 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-4008                     TCGA-AG-4022 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A002                     TCGA-AG-A008 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A00C                     TCGA-AG-A00H 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-AG-A00Y                     TCGA-AG-A011 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A014                     TCGA-AG-A015 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A016                     TCGA-AG-A01J 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01L                     TCGA-AG-A01N 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A01W                     TCGA-AG-A01Y 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A020                     TCGA-AG-A023 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A025                     TCGA-AG-A026 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A02G                     TCGA-AG-A02N 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AG-A02X                     TCGA-AG-A032 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6544                     TCGA-AH-6547 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6643                     TCGA-AH-6644 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-AH-6897                     TCGA-AH-6903 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-BM-6198                     TCGA-CI-6619 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CI-6620                     TCGA-CI-6622 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CI-6623                     TCGA-CI-6624 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-CL-4957                     TCGA-CL-5917 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-CL-5918                     TCGA-DC-4745 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DC-4749                     TCGA-DC-5337 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-5869                     TCGA-DC-6154 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6155                     TCGA-DC-6156 
      "DEL PEAK 37(XP22.33) CNV"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-DC-6157                     TCGA-DC-6158 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6160                     TCGA-DC-6681 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DC-6682                     TCGA-DC-6683 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DT-5265                     TCGA-DY-A0XA 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DC                     TCGA-DY-A1DD 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DE                     TCGA-DY-A1DF 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-DY-A1DG                     TCGA-DY-A1H8 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-EF-5830                     TCGA-EF-5831 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6506                     TCGA-EI-6507 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6508                     TCGA-EI-6509 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6510                     TCGA-EI-6511 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6512                     TCGA-EI-6513 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6514                     TCGA-EI-6881 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6882                     TCGA-EI-6883 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6884                     TCGA-EI-6885 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-EI-6917                     TCGA-EI-7002 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-EI-7004                     TCGA-F5-6465 
"DEL PEAK 37(XP22.33) WILD-TYPE"       "DEL PEAK 37(XP22.33) CNV" 
                    TCGA-F5-6571                     TCGA-F5-6702 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6810                     TCGA-F5-6811 
      "DEL PEAK 37(XP22.33) CNV" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6812                     TCGA-F5-6813 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6814                     TCGA-F5-6861 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-F5-6863                     TCGA-F5-6864 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6233                     TCGA-G5-6235 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
                    TCGA-G5-6572                     TCGA-G5-6641 
"DEL PEAK 37(XP22.33) WILD-TYPE" "DEL PEAK 37(XP22.33) WILD-TYPE" 
[1] "hr=" "1.5"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(XP22.33) CNV         16   17
  DEL PEAK 37(XP22.33) WILD-TYPE   58   71
        clus
vv       DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE
  FEMALE                       16                             58
  MALE                         17                             71
D62V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(XP22.33) CNV         27    3
  DEL PEAK 37(XP22.33) WILD-TYPE  116   10
                                clus
vv                               DEL PEAK 37(XP22.33) CNV
  RECTAL ADENOCARCINOMA                                27
  RECTAL MUCINOUS ADENOCARCINOMA                        3
                                clus
vv                               DEL PEAK 37(XP22.33) WILD-TYPE
  RECTAL ADENOCARCINOMA                                     116
  RECTAL MUCINOUS ADENOCARCINOMA                             10
D62V5, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(XP22.33) CNV          1   32
  DEL PEAK 37(XP22.33) WILD-TYPE    5  124
     clus
vv    DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE
  NO                         1                              5
  YES                       32                            124
                                vv
clus                             M0 M1 M1A MX
  DEL PEAK 37(XP22.33) CNV       24  5   1  2
  DEL PEAK 37(XP22.33) WILD-TYPE 99 17   1 11
D62V6, multiclass
     clus
vv    DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE
  M0                        24                             99
  M1                         5                             17
  M1A                        1                              1
  MX                         2                             11
                                vv
clus                             N0 N1 N1A N1B N1C N2 N2A N2B NX
  DEL PEAK 37(XP22.33) CNV       18  6   1   1   0  6   0   1  0
  DEL PEAK 37(XP22.33) WILD-TYPE 65 29   3   4   1 17   2   6  1
D62V7, multiclass
                                vv
clus                             R0 R1 R2 RX
  DEL PEAK 37(XP22.33) CNV       23  0  3  1
  DEL PEAK 37(XP22.33) WILD-TYPE 98  2  9  2
D62V8, multiclass
    clus
vv   DEL PEAK 37(XP22.33) CNV DEL PEAK 37(XP22.33) WILD-TYPE
  R0                       23                             98
  R1                        0                              2
  R2                        3                              9
  RX                        1                              2
D62V9, continuous
D62V10, continuous
                                vv
clus                             STAGE I STAGE II STAGE IIA STAGE IIB STAGE IIC
  DEL PEAK 37(XP22.33) CNV             6        1        11         0         0
  DEL PEAK 37(XP22.33) WILD-TYPE      24        7        27         2         2
                                vv
clus                             STAGE III STAGE IIIA STAGE IIIB STAGE IIIC
  DEL PEAK 37(XP22.33) CNV               0          2          4          3
  DEL PEAK 37(XP22.33) WILD-TYPE         5          7         19         10
                                vv
clus                             STAGE IV STAGE IVA
  DEL PEAK 37(XP22.33) CNV              4         1
  DEL PEAK 37(XP22.33) WILD-TYPE       13         8
D62V11, multiclass
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                     "HISTOLOGICAL.TYPE" 
                                      V5 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V6 
                    "DISTANT.METASTASIS" 
                                      V7 
                 "LYMPH.NODE.METASTASIS" 
                                      V8 
             "COMPLETENESS.OF.RESECTION" 
                                      V9 
                 "NUMBER.OF.LYMPH.NODES" 
                                     V10 
                       "TUMOR.STAGECODE" 
                                     V11 
                 "NEOPLASM.DISEASESTAGE" 
> q(save="no")
