
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.49.4134/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/417128/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/SARC-TP/3353001/SARC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SARC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=SARC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=29, in cluster file=52, common to both=22
[1] 41 22
[1] "Amp Peak  1(1p32.1)"
[1] 3
      AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE 
                            8                            14 
      AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE 
                            8                            14 
[1] "Amp Peak  2(1q24.3)"
[1] 3
      AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE 
                            9                            13 
      AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE 
                            9                            13 
[1] "Amp Peak  3(4p15.2)"
[1] 3
      AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE 
                            9                            13 
      AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE 
                            9                            13 
[1] "Amp Peak  4(5p15.33)"
[1] 3
      AMP PEAK  4(5P15.33) CNV AMP PEAK  4(5P15.33) WILD-TYPE 
                            13                              9 
      AMP PEAK  4(5P15.33) CNV AMP PEAK  4(5P15.33) WILD-TYPE 
                            13                              9 
[1] "Amp Peak  5(6p21.1)"
[1] 3
      AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE 
                            9                            13 
      AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE 
                            9                            13 
[1] "Amp Peak  6(6q25.1)"
[1] 3
      AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE 
                            8                            14 
      AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE 
                            8                            14 
[1] "Amp Peak  7(7p15.3)"
[1] 3
      AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE 
                            8                            14 
      AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE 
                            8                            14 
[1] "Amp Peak  8(11q22.2)"
[1] 3
      AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE 
                             6                             16 
      AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE 
                             6                             16 
[1] "Amp Peak  9(12p13.32)"
[1] 3
      AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE 
                              6                              16 
      AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE 
                              6                              16 
[1] "Amp Peak 10(12q15)"
[1] 3
      AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE 
                          14                            8 
      AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE 
                          14                            8 
[1] "Amp Peak 11(17p12)"
[1] 3
      AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE 
                           8                           14 
      AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE 
                           8                           14 
[1] "Amp Peak 12(19p13.2)"
[1] 3
      AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE 
                            11                             11 
      AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE 
                            11                             11 
[1] "Amp Peak 13(Xq21.1)"
[1] 3
      AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE 
                            7                            15 
      AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE 
                            7                            15 
[1] "Del Peak  1(1p36.32)"
[1] 3
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                             5                             17 
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                             5                             17 
[1] "Del Peak  2(1p32.3)"
[1] 3
      DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE 
                            6                            16 
      DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE 
                            6                            16 
[1] "Del Peak  3(1q44)"
[1] 3
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                         12                          10 
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                         12                          10 
[1] "Del Peak  4(2q37.3)"
[1] 3
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                           10                            12 
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                           10                            12 
[1] "Del Peak  5(3p21.31)"
[1] 3
      DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE 
                             7                             15 
      DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE 
                             7                             15 
[1] "Del Peak  6(3q25.1)"
[1] 3
      DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE 
                            9                            13 
      DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE 
                            9                            13 
[1] "Del Peak  7(4q35.1)"
[1] 3
      DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE 
                           10                            12 
      DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE 
                           10                            12 
[1] "Del Peak  8(5q23.3)"
[1] 3
      DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE 
                            4                            18 
      DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE 
                            4                            18 
[1] "Del Peak  9(6q15)"
[1] 3
      DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE 
                          4                          18 
      DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE 
                          4                          18 
[1] "Del Peak 10(7q36.3)"
[1] 3
      DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE 
                            6                            16 
      DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE 
                            6                            16 
[1] "Del Peak 11(8p23.2)"
[1] 3
      DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE 
                            8                            14 
      DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE 
                            8                            14 
[1] "Del Peak 12(9p21.3)"
[1] 3
      DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE 
                           12                            10 
      DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE 
                           12                            10 
[1] "Del Peak 13(9q34.3)"
[1] 3
      DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE 
                            5                            17 
      DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE 
                            5                            17 
[1] "Del Peak 14(10p15.3)"
[1] 3
      DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE 
                            11                             11 
      DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE 
                            11                             11 
[1] "Del Peak 15(11p15.5)"
[1] 3
      DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE 
                            11                             11 
      DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE 
                            11                             11 
[1] "Del Peak 16(11q22.3)"
[1] 3
      DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE 
                            11                             11 
      DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE 
                            11                             11 
[1] "Del Peak 17(11q25)"
[1] 3
      DEL PEAK 17(11Q25) CNV DEL PEAK 17(11Q25) WILD-TYPE 
                          12                           10 
      DEL PEAK 17(11Q25) CNV DEL PEAK 17(11Q25) WILD-TYPE 
                          12                           10 
[1] "Del Peak 18(12p12.3)"
[1] 3
      DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE 
                             7                             15 
      DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE 
                             7                             15 
[1] "Del Peak 19(13q14.2)"
[1] 3
      DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE 
                            15                              7 
      DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE 
                            15                              7 
[1] "Del Peak 20(13q34)"
[1] 3
      DEL PEAK 20(13Q34) CNV DEL PEAK 20(13Q34) WILD-TYPE 
                          12                           10 
      DEL PEAK 20(13Q34) CNV DEL PEAK 20(13Q34) WILD-TYPE 
                          12                           10 
[1] "Del Peak 21(14q24.1)"
[1] 3
      DEL PEAK 21(14Q24.1) CNV DEL PEAK 21(14Q24.1) WILD-TYPE 
                            12                             10 
      DEL PEAK 21(14Q24.1) CNV DEL PEAK 21(14Q24.1) WILD-TYPE 
                            12                             10 
[1] "Del Peak 22(17p13.1)"
[1] 3
      DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE 
                             5                             17 
      DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE 
                             5                             17 
[1] "Del Peak 23(17q25.3)"
[1] 3
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                             6                             16 
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                             6                             16 
[1] "Del Peak 24(19p13.3)"
[1] 3
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                             5                             17 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                             5                             17 
[1] "Del Peak 25(19q13.33)"
[1] 3
      DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE 
                             10                              12 
      DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE 
                             10                              12 
[1] "Del Peak 26(21q22.3)"
[1] 3
      DEL PEAK 26(21Q22.3) CNV DEL PEAK 26(21Q22.3) WILD-TYPE 
                             8                             14 
      DEL PEAK 26(21Q22.3) CNV DEL PEAK 26(21Q22.3) WILD-TYPE 
                             8                             14 
[1] "Del Peak 27(Xq21.1)"
[1] 3
      DEL PEAK 27(XQ21.1) CNV DEL PEAK 27(XQ21.1) WILD-TYPE 
                            8                            14 
      DEL PEAK 27(XQ21.1) CNV DEL PEAK 27(XQ21.1) WILD-TYPE 
                            8                            14 
[1] "Del Peak 28(Xq28)"
[1] 3
      DEL PEAK 28(XQ28) CNV DEL PEAK 28(XQ28) WILD-TYPE 
                         10                          12 
      DEL PEAK 28(XQ28) CNV DEL PEAK 28(XQ28) WILD-TYPE 
                         10                          12 
[1] "data2feature, selection=ALL"
[1] "YEARSTOBIRTH"                          
[2] "DAYSTODEATH"                           
[3] "DAYSTOLASTFOLLOWUP"                    
[4] "VITALSTATUS"                           
[5] "DCCUPLOADDATE"                         
[6] "GENDER"                                
[7] "RADIATIONTHERAPY"                      
[8] "RADIATIONS.RADIATION.REGIMENINDICATION"
[9] "BATCHNUMBER"                           

Input Data has 9 rows and 22 columns.

[1] "Batch" "9"    
[1] "Last Follow UP"
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
          62          827           NA          745           NA         1420 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
        1291          960          260           NA         1620         1309 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV 
          14            3            2            2          818           NA 
TCGA-HB-A43Z TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-KF-A41W 
         126           NA           NA          181 
Variable 1:'AGE':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=15,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'BATCH.NUMBER':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"    "GENDER"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 22 columns, 1 survival variables, and 2 non-survival variables.
AGE, nv=14, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p32.1)
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1P32.1) CNV        5  3
  AMP PEAK  1(1P32.1) WILD-TYPE 11  3
      AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE 
                            8                            14 
      AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE 
                            3                             3 
$`AMP PEAK  1(1P32.1) CNV`
TCGA-DX-A1L0 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-FX-A2QS TCGA-HB-A2OT TCGA-HB-A3YV 
       18.51         8.55         9.70         0.46        26.89         4.54 
TCGA-HB-A43Z TCGA-KF-A41W 
        4.14         5.95 

$`AMP PEAK  1(1P32.1) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 
        2.04        27.19        12.85        24.49        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       31.56        53.26        43.04         0.10         0.07         0.07 
TCGA-IS-A3KA TCGA-IW-A3M5 
       13.58         5.88 

      AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE 
                         0.46                          0.07 
      AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE 
                        26.89                         53.26 
      AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE 
                        7.250                        19.035 
[1] "0.5 - 26.9 (7.2)"  "0.1 - 53.3 (19.0)"
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "AMP PEAK  1(1P32.1) CNV" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
      "AMP PEAK  1(1P32.1) CNV"       "AMP PEAK  1(1P32.1) CNV" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  1(1P32.1) CNV" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  1(1P32.1) CNV"       "AMP PEAK  1(1P32.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "AMP PEAK  1(1P32.1) CNV" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"AMP PEAK  1(1P32.1) WILD-TYPE"       "AMP PEAK  1(1P32.1) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "AMP PEAK  1(1P32.1) CNV" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
      "AMP PEAK  1(1P32.1) CNV"       "AMP PEAK  1(1P32.1) CNV" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  1(1P32.1) CNV" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  1(1P32.1) CNV"       "AMP PEAK  1(1P32.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "AMP PEAK  1(1P32.1) CNV" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"AMP PEAK  1(1P32.1) WILD-TYPE"       "AMP PEAK  1(1P32.1) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "AMP PEAK  1(1P32.1) CNV" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
      "AMP PEAK  1(1P32.1) CNV"       "AMP PEAK  1(1P32.1) CNV" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  1(1P32.1) CNV" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  1(1P32.1) CNV"       "AMP PEAK  1(1P32.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "AMP PEAK  1(1P32.1) CNV" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"AMP PEAK  1(1P32.1) WILD-TYPE"       "AMP PEAK  1(1P32.1) CNV" 
[1] "hr=" "2.9"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P32.1) CNV          4    4
  AMP PEAK  1(1P32.1) WILD-TYPE    6    8
        clus
vv       AMP PEAK  1(1P32.1) CNV AMP PEAK  1(1P32.1) WILD-TYPE
  FEMALE                       4                             6
  MALE                         4                             8

Clustering(2) Variable = Amp Peak  2(1q24.3)
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(1Q24.3) CNV        6  3
  AMP PEAK  2(1Q24.3) WILD-TYPE 10  3
      AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE 
                            9                            13 
      AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE 
                            3                             3 
$`AMP PEAK  2(1Q24.3) CNV`
TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2J0 TCGA-FX-A2QS 
       12.85        18.51        42.44        31.56         9.70         0.46 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z 
        0.07        26.89         4.14 

$`AMP PEAK  2(1Q24.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A2IZ TCGA-DX-A2J1 
        2.04        27.19        24.49        46.68         8.55        53.26 
TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A3YV TCGA-IS-A3KA TCGA-IW-A3M5 
       43.04         0.10         0.07         4.54        13.58         5.88 
TCGA-KF-A41W 
        5.95 

      AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE 
                         0.07                          0.07 
      AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE 
                        42.44                         53.26 
      AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE 
                        12.85                          8.55 
[1] "0.1 - 42.4 (12.8)" "0.1 - 53.3 (8.6)" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "AMP PEAK  2(1Q24.3) CNV"       "AMP PEAK  2(1Q24.3) CNV" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  2(1Q24.3) WILD-TYPE"       "AMP PEAK  2(1Q24.3) CNV" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  2(1Q24.3) WILD-TYPE"       "AMP PEAK  2(1Q24.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "AMP PEAK  2(1Q24.3) CNV"       "AMP PEAK  2(1Q24.3) CNV" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  2(1Q24.3) WILD-TYPE"       "AMP PEAK  2(1Q24.3) CNV" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  2(1Q24.3) WILD-TYPE"       "AMP PEAK  2(1Q24.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "AMP PEAK  2(1Q24.3) CNV"       "AMP PEAK  2(1Q24.3) CNV" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  2(1Q24.3) WILD-TYPE"       "AMP PEAK  2(1Q24.3) CNV" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  2(1Q24.3) WILD-TYPE"       "AMP PEAK  2(1Q24.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "AMP PEAK  2(1Q24.3) CNV" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
[1] "hr=" "1.3"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q24.3) CNV          5    4
  AMP PEAK  2(1Q24.3) WILD-TYPE    5    8
        clus
vv       AMP PEAK  2(1Q24.3) CNV AMP PEAK  2(1Q24.3) WILD-TYPE
  FEMALE                       5                             5
  MALE                         4                             8

Clustering(3) Variable = Amp Peak  3(4p15.2)
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(4P15.2) CNV        5  4
  AMP PEAK  3(4P15.2) WILD-TYPE 11  2
      AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE 
                            9                            13 
      AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE 
                            4                             2 
$`AMP PEAK  3(4P15.2) CNV`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-FX-A2QS TCGA-HB-A2OT 
       27.19        12.85        18.51        46.68         0.46        26.89 
TCGA-HB-A3YV TCGA-IS-A3KA TCGA-KF-A41W 
        4.54        13.58         5.95 

$`AMP PEAK  3(4P15.2) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 
        2.04        24.49        42.44        31.56         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z 
       53.26        43.04         0.10         0.07         0.07         4.14 
TCGA-IW-A3M5 
        5.88 

      AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE 
                         0.46                          0.07 
      AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE 
                        46.68                         53.26 
      AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE 
                        13.58                          8.55 
[1] "0.5 - 46.7 (13.6)" "0.1 - 53.3 (8.6)" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK  3(4P15.2) WILD-TYPE"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "AMP PEAK  3(4P15.2) CNV" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "AMP PEAK  3(4P15.2) CNV"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"AMP PEAK  3(4P15.2) WILD-TYPE" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  3(4P15.2) WILD-TYPE" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  3(4P15.2) WILD-TYPE" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  3(4P15.2) CNV" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  3(4P15.2) WILD-TYPE" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  3(4P15.2) CNV"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"AMP PEAK  3(4P15.2) WILD-TYPE"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"AMP PEAK  3(4P15.2) WILD-TYPE"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK  3(4P15.2) WILD-TYPE"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "AMP PEAK  3(4P15.2) CNV" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "AMP PEAK  3(4P15.2) CNV"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"AMP PEAK  3(4P15.2) WILD-TYPE" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  3(4P15.2) WILD-TYPE" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  3(4P15.2) WILD-TYPE" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  3(4P15.2) CNV" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  3(4P15.2) WILD-TYPE" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  3(4P15.2) CNV"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"AMP PEAK  3(4P15.2) WILD-TYPE"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"AMP PEAK  3(4P15.2) WILD-TYPE"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK  3(4P15.2) WILD-TYPE"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "AMP PEAK  3(4P15.2) CNV" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "AMP PEAK  3(4P15.2) CNV"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"AMP PEAK  3(4P15.2) WILD-TYPE" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  3(4P15.2) WILD-TYPE" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  3(4P15.2) WILD-TYPE" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  3(4P15.2) CNV" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  3(4P15.2) WILD-TYPE" "AMP PEAK  3(4P15.2) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  3(4P15.2) CNV"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"AMP PEAK  3(4P15.2) WILD-TYPE"       "AMP PEAK  3(4P15.2) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"AMP PEAK  3(4P15.2) WILD-TYPE"       "AMP PEAK  3(4P15.2) CNV" 
[1] "hr=" "2.1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(4P15.2) CNV          5    4
  AMP PEAK  3(4P15.2) WILD-TYPE    5    8
        clus
vv       AMP PEAK  3(4P15.2) CNV AMP PEAK  3(4P15.2) WILD-TYPE
  FEMALE                       5                             5
  MALE                         4                             8

Clustering(4) Variable = Amp Peak  4(5p15.33)
D4V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  4(5P15.33) CNV       10  3
  AMP PEAK  4(5P15.33) WILD-TYPE  6  3
      AMP PEAK  4(5P15.33) CNV AMP PEAK  4(5P15.33) WILD-TYPE 
                            13                              9 
      AMP PEAK  4(5P15.33) CNV AMP PEAK  4(5P15.33) WILD-TYPE 
                             3                              3 
$`AMP PEAK  4(5P15.33) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
        2.04        27.19        24.49        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-FX-A2QS TCGA-HB-A2OT TCGA-HB-A43Z 
       31.56         8.55         9.70         0.46        26.89         4.14 
TCGA-IW-A3M5 
        5.88 

$`AMP PEAK  4(5P15.33) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
       12.85        53.26        43.04         0.10         0.07         0.07 
TCGA-HB-A3YV TCGA-IS-A3KA TCGA-KF-A41W 
        4.54        13.58         5.95 

      AMP PEAK  4(5P15.33) CNV AMP PEAK  4(5P15.33) WILD-TYPE 
                          0.46                           0.07 
      AMP PEAK  4(5P15.33) CNV AMP PEAK  4(5P15.33) WILD-TYPE 
                         46.68                          53.26 
      AMP PEAK  4(5P15.33) CNV AMP PEAK  4(5P15.33) WILD-TYPE 
                         18.51                           5.95 
[1] "0.5 - 46.7 (18.5)" "0.1 - 53.3 (6.0)" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "AMP PEAK  4(5P15.33) CNV"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"AMP PEAK  4(5P15.33) WILD-TYPE"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "AMP PEAK  4(5P15.33) CNV"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "AMP PEAK  4(5P15.33) CNV"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
      "AMP PEAK  4(5P15.33) CNV"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "AMP PEAK  4(5P15.33) CNV" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "AMP PEAK  4(5P15.33) CNV" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "AMP PEAK  4(5P15.33) CNV" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "AMP PEAK  4(5P15.33) CNV" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "AMP PEAK  4(5P15.33) CNV"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"AMP PEAK  4(5P15.33) WILD-TYPE"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "AMP PEAK  4(5P15.33) CNV"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "AMP PEAK  4(5P15.33) CNV"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
      "AMP PEAK  4(5P15.33) CNV"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "AMP PEAK  4(5P15.33) CNV" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "AMP PEAK  4(5P15.33) CNV" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "AMP PEAK  4(5P15.33) CNV" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "AMP PEAK  4(5P15.33) CNV" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "AMP PEAK  4(5P15.33) CNV"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"AMP PEAK  4(5P15.33) WILD-TYPE"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "AMP PEAK  4(5P15.33) CNV"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "AMP PEAK  4(5P15.33) CNV"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
      "AMP PEAK  4(5P15.33) CNV"       "AMP PEAK  4(5P15.33) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "AMP PEAK  4(5P15.33) CNV" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "AMP PEAK  4(5P15.33) CNV" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "AMP PEAK  4(5P15.33) CNV" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "AMP PEAK  4(5P15.33) CNV" "AMP PEAK  4(5P15.33) WILD-TYPE" 
[1] "hr=" "2.1"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(5P15.33) CNV          6    7
  AMP PEAK  4(5P15.33) WILD-TYPE    4    5
        clus
vv       AMP PEAK  4(5P15.33) CNV AMP PEAK  4(5P15.33) WILD-TYPE
  FEMALE                        6                              4
  MALE                          7                              5

Clustering(5) Variable = Amp Peak  5(6p21.1)
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(6P21.1) CNV        6  3
  AMP PEAK  5(6P21.1) WILD-TYPE 10  3
      AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE 
                            9                            13 
      AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE 
                            3                             3 
$`AMP PEAK  5(6P21.1) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L2 TCGA-FX-A2QS TCGA-HB-A2OT TCGA-HB-A3YV 
        2.04        27.19        42.44         0.46        26.89         4.54 
TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-KF-A41W 
       13.58         5.88         5.95 

$`AMP PEAK  5(6P21.1) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A2IZ 
       12.85        24.49        18.51        46.68        31.56         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
        9.70        53.26        43.04         0.10         0.07         0.07 
TCGA-HB-A43Z 
        4.14 

      AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE 
                         0.46                          0.07 
      AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE 
                        42.44                         53.26 
      AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE 
                         5.95                         12.85 
[1] "0.5 - 42.4 (6.0)"  "0.1 - 53.3 (12.8)"
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
      "AMP PEAK  5(6P21.1) CNV"       "AMP PEAK  5(6P21.1) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "AMP PEAK  5(6P21.1) CNV" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  5(6P21.1) CNV" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  5(6P21.1) CNV"       "AMP PEAK  5(6P21.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"AMP PEAK  5(6P21.1) WILD-TYPE"       "AMP PEAK  5(6P21.1) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "AMP PEAK  5(6P21.1) CNV"       "AMP PEAK  5(6P21.1) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
      "AMP PEAK  5(6P21.1) CNV"       "AMP PEAK  5(6P21.1) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "AMP PEAK  5(6P21.1) CNV" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  5(6P21.1) CNV" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  5(6P21.1) CNV"       "AMP PEAK  5(6P21.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"AMP PEAK  5(6P21.1) WILD-TYPE"       "AMP PEAK  5(6P21.1) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "AMP PEAK  5(6P21.1) CNV"       "AMP PEAK  5(6P21.1) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
      "AMP PEAK  5(6P21.1) CNV"       "AMP PEAK  5(6P21.1) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "AMP PEAK  5(6P21.1) CNV" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  5(6P21.1) CNV" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  5(6P21.1) CNV"       "AMP PEAK  5(6P21.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"AMP PEAK  5(6P21.1) WILD-TYPE"       "AMP PEAK  5(6P21.1) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "AMP PEAK  5(6P21.1) CNV"       "AMP PEAK  5(6P21.1) CNV" 
[1] "hr=" "1.7"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(6P21.1) CNV          6    3
  AMP PEAK  5(6P21.1) WILD-TYPE    4    9
        clus
vv       AMP PEAK  5(6P21.1) CNV AMP PEAK  5(6P21.1) WILD-TYPE
  FEMALE                       6                             4
  MALE                         3                             9

Clustering(6) Variable = Amp Peak  6(6q25.1)
D6V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  6(6Q25.1) CNV        6  2
  AMP PEAK  6(6Q25.1) WILD-TYPE 10  4
      AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE 
                            8                            14 
      AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE 
                            2                             4 
$`AMP PEAK  6(6Q25.1) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A2J1 TCGA-HB-A2OT TCGA-HB-A3YV 
        2.04        27.19        24.49        53.26        26.89         4.54 
TCGA-HB-A43Z TCGA-IW-A3M5 
        4.14         5.88 

$`AMP PEAK  6(6Q25.1) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ 
       12.85        18.51        46.68        42.44        31.56         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
        9.70        43.04         0.46         0.10         0.07         0.07 
TCGA-IS-A3KA TCGA-KF-A41W 
       13.58         5.95 

      AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE 
                         2.04                          0.07 
      AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE 
                        53.26                         46.68 
      AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE 
                       15.185                        11.275 
[1] "2.0 - 53.3 (15.2)" "0.1 - 46.7 (11.3)"
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
      "AMP PEAK  6(6Q25.1) CNV"       "AMP PEAK  6(6Q25.1) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"AMP PEAK  6(6Q25.1) WILD-TYPE"       "AMP PEAK  6(6Q25.1) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
      "AMP PEAK  6(6Q25.1) CNV" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  6(6Q25.1) CNV"       "AMP PEAK  6(6Q25.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "AMP PEAK  6(6Q25.1) CNV" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "AMP PEAK  6(6Q25.1) CNV" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
      "AMP PEAK  6(6Q25.1) CNV"       "AMP PEAK  6(6Q25.1) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"AMP PEAK  6(6Q25.1) WILD-TYPE"       "AMP PEAK  6(6Q25.1) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
      "AMP PEAK  6(6Q25.1) CNV" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  6(6Q25.1) CNV"       "AMP PEAK  6(6Q25.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "AMP PEAK  6(6Q25.1) CNV" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "AMP PEAK  6(6Q25.1) CNV" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
      "AMP PEAK  6(6Q25.1) CNV"       "AMP PEAK  6(6Q25.1) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"AMP PEAK  6(6Q25.1) WILD-TYPE"       "AMP PEAK  6(6Q25.1) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
      "AMP PEAK  6(6Q25.1) CNV" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  6(6Q25.1) WILD-TYPE" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  6(6Q25.1) CNV"       "AMP PEAK  6(6Q25.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "AMP PEAK  6(6Q25.1) CNV" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "AMP PEAK  6(6Q25.1) CNV" "AMP PEAK  6(6Q25.1) WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(6Q25.1) CNV          4    4
  AMP PEAK  6(6Q25.1) WILD-TYPE    6    8
        clus
vv       AMP PEAK  6(6Q25.1) CNV AMP PEAK  6(6Q25.1) WILD-TYPE
  FEMALE                       4                             6
  MALE                         4                             8

Clustering(7) Variable = Amp Peak  7(7p15.3)
D7V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  7(7P15.3) CNV        5  3
  AMP PEAK  7(7P15.3) WILD-TYPE 11  3
      AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE 
                            8                            14 
      AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE 
                            3                             3 
$`AMP PEAK  7(7P15.3) CNV`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-FX-A2QS TCGA-HB-A2OT 
       27.19        12.85        24.49        42.44         0.46        26.89 
TCGA-HB-A3YV TCGA-IW-A3M5 
        4.54         5.88 

$`AMP PEAK  7(7P15.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 
        2.04        18.51        46.68        31.56         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z 
       53.26        43.04         0.10         0.07         0.07         4.14 
TCGA-IS-A3KA TCGA-KF-A41W 
       13.58         5.95 

      AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE 
                         0.46                          0.07 
      AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE 
                        42.44                         53.26 
      AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE 
                       18.670                         9.125 
[1] "0.5 - 42.4 (18.7)" "0.1 - 53.3 (9.1)" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK  7(7P15.3) WILD-TYPE"       "AMP PEAK  7(7P15.3) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "AMP PEAK  7(7P15.3) CNV"       "AMP PEAK  7(7P15.3) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "AMP PEAK  7(7P15.3) CNV" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  7(7P15.3) CNV" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  7(7P15.3) CNV"       "AMP PEAK  7(7P15.3) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "AMP PEAK  7(7P15.3) CNV" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK  7(7P15.3) WILD-TYPE"       "AMP PEAK  7(7P15.3) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "AMP PEAK  7(7P15.3) CNV"       "AMP PEAK  7(7P15.3) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "AMP PEAK  7(7P15.3) CNV" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  7(7P15.3) CNV" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  7(7P15.3) CNV"       "AMP PEAK  7(7P15.3) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "AMP PEAK  7(7P15.3) CNV" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK  7(7P15.3) WILD-TYPE"       "AMP PEAK  7(7P15.3) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "AMP PEAK  7(7P15.3) CNV"       "AMP PEAK  7(7P15.3) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "AMP PEAK  7(7P15.3) CNV" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK  7(7P15.3) CNV" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "AMP PEAK  7(7P15.3) CNV"       "AMP PEAK  7(7P15.3) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"AMP PEAK  7(7P15.3) WILD-TYPE" "AMP PEAK  7(7P15.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "AMP PEAK  7(7P15.3) CNV" "AMP PEAK  7(7P15.3) WILD-TYPE" 
[1] "hr=" "1.4"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(7P15.3) CNV          4    4
  AMP PEAK  7(7P15.3) WILD-TYPE    6    8
        clus
vv       AMP PEAK  7(7P15.3) CNV AMP PEAK  7(7P15.3) WILD-TYPE
  FEMALE                       4                             6
  MALE                         4                             8

Clustering(8) Variable = Amp Peak  8(11q22.2)
D8V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  8(11Q22.2) CNV        6  0
  AMP PEAK  8(11Q22.2) WILD-TYPE 10  6
      AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE 
                             6                             16 
      AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE 
                             0                              6 
$`AMP PEAK  8(11Q22.2) CNV`
TCGA-DX-A1KX TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A2J1 TCGA-HB-A43Z TCGA-KF-A41W 
       27.19        46.68        42.44        53.26         4.14         5.95 

$`AMP PEAK  8(11Q22.2) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 TCGA-DX-A2IZ 
        2.04        12.85        24.49        18.51        31.56         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
        9.70        43.04         0.46         0.10         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IS-A3KA TCGA-IW-A3M5 
       26.89         4.54        13.58         5.88 

      AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE 
                          4.14                           0.07 
      AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE 
                         53.26                          43.04 
      AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE 
                        34.815                          9.125 
[1] "4.1 - 53.3 (34.8)" "0.1 - 43.0 (9.1)" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"AMP PEAK  8(11Q22.2) WILD-TYPE"       "AMP PEAK  8(11Q22.2) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"AMP PEAK  8(11Q22.2) WILD-TYPE"       "AMP PEAK  8(11Q22.2) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "AMP PEAK  8(11Q22.2) CNV" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
      "AMP PEAK  8(11Q22.2) CNV" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "AMP PEAK  8(11Q22.2) CNV" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"AMP PEAK  8(11Q22.2) WILD-TYPE"       "AMP PEAK  8(11Q22.2) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"AMP PEAK  8(11Q22.2) WILD-TYPE"       "AMP PEAK  8(11Q22.2) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"AMP PEAK  8(11Q22.2) WILD-TYPE"       "AMP PEAK  8(11Q22.2) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "AMP PEAK  8(11Q22.2) CNV" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
      "AMP PEAK  8(11Q22.2) CNV" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "AMP PEAK  8(11Q22.2) CNV" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"AMP PEAK  8(11Q22.2) WILD-TYPE"       "AMP PEAK  8(11Q22.2) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"AMP PEAK  8(11Q22.2) WILD-TYPE"       "AMP PEAK  8(11Q22.2) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"AMP PEAK  8(11Q22.2) WILD-TYPE"       "AMP PEAK  8(11Q22.2) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "AMP PEAK  8(11Q22.2) CNV" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
      "AMP PEAK  8(11Q22.2) CNV" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"AMP PEAK  8(11Q22.2) WILD-TYPE" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "AMP PEAK  8(11Q22.2) CNV" "AMP PEAK  8(11Q22.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"AMP PEAK  8(11Q22.2) WILD-TYPE"       "AMP PEAK  8(11Q22.2) CNV" 
[1] "hr="     "1.1e+09"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(11Q22.2) CNV          3    3
  AMP PEAK  8(11Q22.2) WILD-TYPE    7    9
        clus
vv       AMP PEAK  8(11Q22.2) CNV AMP PEAK  8(11Q22.2) WILD-TYPE
  FEMALE                        3                              7
  MALE                          3                              9

Clustering(9) Variable = Amp Peak  9(12p13.32)
D9V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK  9(12P13.32) CNV        3  3
  AMP PEAK  9(12P13.32) WILD-TYPE 13  3
      AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE 
                              6                              16 
      AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE 
                              3                               3 
$`AMP PEAK  9(12P13.32) CNV`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A2J1 TCGA-FX-A48G TCGA-HB-A3YV TCGA-IW-A3M5 
       27.19        12.85        53.26         0.07         4.54         5.88 

$`AMP PEAK  9(12P13.32) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
        2.04        24.49        18.51        46.68        42.44        31.56 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
        8.55         9.70        43.04         0.46         0.10         0.07 
TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IS-A3KA TCGA-KF-A41W 
       26.89         4.14        13.58         5.95 

      AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE 
                           0.07                            0.07 
      AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE 
                          53.26                           46.68 
      AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE 
                          9.365                          11.640 
[1] "0.1 - 53.3 (9.4)"  "0.1 - 46.7 (11.6)"
                     TCGA-DX-A1KW                      TCGA-DX-A1KX 
"AMP PEAK  9(12P13.32) WILD-TYPE"       "AMP PEAK  9(12P13.32) CNV" 
                     TCGA-DX-A1KY                      TCGA-DX-A1KZ 
      "AMP PEAK  9(12P13.32) CNV" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1L0                      TCGA-DX-A1L1 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1L2                      TCGA-DX-A1L3 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A2IZ                      TCGA-DX-A2J0 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A2J1                      TCGA-DX-A2J4 
      "AMP PEAK  9(12P13.32) CNV" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-FX-A2QS                      TCGA-FX-A3NJ 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-FX-A3RE                      TCGA-FX-A48G 
"AMP PEAK  9(12P13.32) WILD-TYPE"       "AMP PEAK  9(12P13.32) CNV" 
                     TCGA-HB-A2OT                      TCGA-HB-A3YV 
"AMP PEAK  9(12P13.32) WILD-TYPE"       "AMP PEAK  9(12P13.32) CNV" 
                     TCGA-HB-A43Z                      TCGA-IS-A3KA 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-KF-A41W 
      "AMP PEAK  9(12P13.32) CNV" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1KW                      TCGA-DX-A1KX 
"AMP PEAK  9(12P13.32) WILD-TYPE"       "AMP PEAK  9(12P13.32) CNV" 
                     TCGA-DX-A1KY                      TCGA-DX-A1KZ 
      "AMP PEAK  9(12P13.32) CNV" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1L0                      TCGA-DX-A1L1 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1L2                      TCGA-DX-A1L3 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A2IZ                      TCGA-DX-A2J0 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A2J1                      TCGA-DX-A2J4 
      "AMP PEAK  9(12P13.32) CNV" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-FX-A2QS                      TCGA-FX-A3NJ 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-FX-A3RE                      TCGA-FX-A48G 
"AMP PEAK  9(12P13.32) WILD-TYPE"       "AMP PEAK  9(12P13.32) CNV" 
                     TCGA-HB-A2OT                      TCGA-HB-A3YV 
"AMP PEAK  9(12P13.32) WILD-TYPE"       "AMP PEAK  9(12P13.32) CNV" 
                     TCGA-HB-A43Z                      TCGA-IS-A3KA 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-KF-A41W 
      "AMP PEAK  9(12P13.32) CNV" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1KW                      TCGA-DX-A1KX 
"AMP PEAK  9(12P13.32) WILD-TYPE"       "AMP PEAK  9(12P13.32) CNV" 
                     TCGA-DX-A1KY                      TCGA-DX-A1KZ 
      "AMP PEAK  9(12P13.32) CNV" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1L0                      TCGA-DX-A1L1 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1L2                      TCGA-DX-A1L3 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A2IZ                      TCGA-DX-A2J0 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-DX-A2J1                      TCGA-DX-A2J4 
      "AMP PEAK  9(12P13.32) CNV" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-FX-A2QS                      TCGA-FX-A3NJ 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-FX-A3RE                      TCGA-FX-A48G 
"AMP PEAK  9(12P13.32) WILD-TYPE"       "AMP PEAK  9(12P13.32) CNV" 
                     TCGA-HB-A2OT                      TCGA-HB-A3YV 
"AMP PEAK  9(12P13.32) WILD-TYPE"       "AMP PEAK  9(12P13.32) CNV" 
                     TCGA-HB-A43Z                      TCGA-IS-A3KA 
"AMP PEAK  9(12P13.32) WILD-TYPE" "AMP PEAK  9(12P13.32) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-KF-A41W 
      "AMP PEAK  9(12P13.32) CNV" "AMP PEAK  9(12P13.32) WILD-TYPE" 
[1] "hr=" "3"  
D9V2, continuous
D9V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK  9(12P13.32) CNV          3    3
  AMP PEAK  9(12P13.32) WILD-TYPE    7    9
        clus
vv       AMP PEAK  9(12P13.32) CNV AMP PEAK  9(12P13.32) WILD-TYPE
  FEMALE                         3                               7
  MALE                           3                               9

Clustering(10) Variable = Amp Peak 10(12q15)
D10V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 10(12Q15) CNV       10  4
  AMP PEAK 10(12Q15) WILD-TYPE  6  2
      AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE 
                          14                            8 
      AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE 
                           4                            2 
$`AMP PEAK 10(12Q15) CNV`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
        2.04        12.85        24.49        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A2QS 
       31.56         8.55         9.70        53.26        43.04         0.46 
TCGA-HB-A3YV TCGA-KF-A41W 
        4.54         5.95 

$`AMP PEAK 10(12Q15) WILD-TYPE`
TCGA-DX-A1KX TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z 
       27.19         0.10         0.07         0.07        26.89         4.14 
TCGA-IS-A3KA TCGA-IW-A3M5 
       13.58         5.88 

      AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE 
                        0.46                         0.07 
      AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE 
                       53.26                        27.19 
      AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE 
                       15.68                         5.01 
[1] "0.5 - 53.3 (15.7)" "0.1 - 27.2 (5.0)" 
                  TCGA-DX-A1KW                   TCGA-DX-A1KX 
      "AMP PEAK 10(12Q15) CNV" "AMP PEAK 10(12Q15) WILD-TYPE" 
                  TCGA-DX-A1KY                   TCGA-DX-A1KZ 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A1L0                   TCGA-DX-A1L1 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A1L2                   TCGA-DX-A1L3 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A2IZ                   TCGA-DX-A2J0 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A2J1                   TCGA-DX-A2J4 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-FX-A2QS                   TCGA-FX-A3NJ 
      "AMP PEAK 10(12Q15) CNV" "AMP PEAK 10(12Q15) WILD-TYPE" 
                  TCGA-FX-A3RE                   TCGA-FX-A48G 
"AMP PEAK 10(12Q15) WILD-TYPE" "AMP PEAK 10(12Q15) WILD-TYPE" 
                  TCGA-HB-A2OT                   TCGA-HB-A3YV 
"AMP PEAK 10(12Q15) WILD-TYPE"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-HB-A43Z                   TCGA-IS-A3KA 
"AMP PEAK 10(12Q15) WILD-TYPE" "AMP PEAK 10(12Q15) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-KF-A41W 
"AMP PEAK 10(12Q15) WILD-TYPE"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A1KW                   TCGA-DX-A1KX 
      "AMP PEAK 10(12Q15) CNV" "AMP PEAK 10(12Q15) WILD-TYPE" 
                  TCGA-DX-A1KY                   TCGA-DX-A1KZ 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A1L0                   TCGA-DX-A1L1 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A1L2                   TCGA-DX-A1L3 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A2IZ                   TCGA-DX-A2J0 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A2J1                   TCGA-DX-A2J4 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-FX-A2QS                   TCGA-FX-A3NJ 
      "AMP PEAK 10(12Q15) CNV" "AMP PEAK 10(12Q15) WILD-TYPE" 
                  TCGA-FX-A3RE                   TCGA-FX-A48G 
"AMP PEAK 10(12Q15) WILD-TYPE" "AMP PEAK 10(12Q15) WILD-TYPE" 
                  TCGA-HB-A2OT                   TCGA-HB-A3YV 
"AMP PEAK 10(12Q15) WILD-TYPE"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-HB-A43Z                   TCGA-IS-A3KA 
"AMP PEAK 10(12Q15) WILD-TYPE" "AMP PEAK 10(12Q15) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-KF-A41W 
"AMP PEAK 10(12Q15) WILD-TYPE"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A1KW                   TCGA-DX-A1KX 
      "AMP PEAK 10(12Q15) CNV" "AMP PEAK 10(12Q15) WILD-TYPE" 
                  TCGA-DX-A1KY                   TCGA-DX-A1KZ 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A1L0                   TCGA-DX-A1L1 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A1L2                   TCGA-DX-A1L3 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A2IZ                   TCGA-DX-A2J0 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-DX-A2J1                   TCGA-DX-A2J4 
      "AMP PEAK 10(12Q15) CNV"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-FX-A2QS                   TCGA-FX-A3NJ 
      "AMP PEAK 10(12Q15) CNV" "AMP PEAK 10(12Q15) WILD-TYPE" 
                  TCGA-FX-A3RE                   TCGA-FX-A48G 
"AMP PEAK 10(12Q15) WILD-TYPE" "AMP PEAK 10(12Q15) WILD-TYPE" 
                  TCGA-HB-A2OT                   TCGA-HB-A3YV 
"AMP PEAK 10(12Q15) WILD-TYPE"       "AMP PEAK 10(12Q15) CNV" 
                  TCGA-HB-A43Z                   TCGA-IS-A3KA 
"AMP PEAK 10(12Q15) WILD-TYPE" "AMP PEAK 10(12Q15) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-KF-A41W 
"AMP PEAK 10(12Q15) WILD-TYPE"       "AMP PEAK 10(12Q15) CNV" 
[1] "hr=" "1.4"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 10(12Q15) CNV          3   11
  AMP PEAK 10(12Q15) WILD-TYPE    7    1
        clus
vv       AMP PEAK 10(12Q15) CNV AMP PEAK 10(12Q15) WILD-TYPE
  FEMALE                      3                            7
  MALE                       11                            1

Clustering(11) Variable = Amp Peak 11(17p12)
D11V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 11(17P12) CNV        6  2
  AMP PEAK 11(17P12) WILD-TYPE 10  4
      AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE 
                           8                           14 
      AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE 
                           2                            4 
$`AMP PEAK 11(17P12) CNV`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-FX-A3RE TCGA-FX-A48G 
        2.04        12.85        46.68        42.44         0.07         0.07 
TCGA-HB-A3YV TCGA-KF-A41W 
        4.54         5.95 

$`AMP PEAK 11(17P12) WILD-TYPE`
TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 
       27.19        24.49        18.51        31.56         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-HB-A43Z 
       53.26        43.04         0.46         0.10        26.89         4.14 
TCGA-IS-A3KA TCGA-IW-A3M5 
       13.58         5.88 

      AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE 
                        0.07                         0.10 
      AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE 
                       46.68                        53.26 
      AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE 
                       5.245                       16.045 
[1] "0.1 - 46.7 (5.2)"  "0.1 - 53.3 (16.0)"
                  TCGA-DX-A1KW                   TCGA-DX-A1KX 
      "AMP PEAK 11(17P12) CNV" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-DX-A1KY                   TCGA-DX-A1KZ 
      "AMP PEAK 11(17P12) CNV" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-DX-A1L0                   TCGA-DX-A1L1 
"AMP PEAK 11(17P12) WILD-TYPE"       "AMP PEAK 11(17P12) CNV" 
                  TCGA-DX-A1L2                   TCGA-DX-A1L3 
      "AMP PEAK 11(17P12) CNV" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-DX-A2IZ                   TCGA-DX-A2J0 
"AMP PEAK 11(17P12) WILD-TYPE" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-DX-A2J1                   TCGA-DX-A2J4 
"AMP PEAK 11(17P12) WILD-TYPE" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-FX-A2QS                   TCGA-FX-A3NJ 
"AMP PEAK 11(17P12) WILD-TYPE" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-FX-A3RE                   TCGA-FX-A48G 
      "AMP PEAK 11(17P12) CNV"       "AMP PEAK 11(17P12) CNV" 
                  TCGA-HB-A2OT                   TCGA-HB-A3YV 
"AMP PEAK 11(17P12) WILD-TYPE"       "AMP PEAK 11(17P12) CNV" 
                  TCGA-HB-A43Z                   TCGA-IS-A3KA 
"AMP PEAK 11(17P12) WILD-TYPE" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-KF-A41W 
"AMP PEAK 11(17P12) WILD-TYPE"       "AMP PEAK 11(17P12) CNV" 
                  TCGA-DX-A1KW                   TCGA-DX-A1KX 
      "AMP PEAK 11(17P12) CNV" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-DX-A1KY                   TCGA-DX-A1KZ 
      "AMP PEAK 11(17P12) CNV" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-DX-A1L0                   TCGA-DX-A1L1 
"AMP PEAK 11(17P12) WILD-TYPE"       "AMP PEAK 11(17P12) CNV" 
                  TCGA-DX-A1L2                   TCGA-DX-A1L3 
      "AMP PEAK 11(17P12) CNV" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-DX-A2IZ                   TCGA-DX-A2J0 
"AMP PEAK 11(17P12) WILD-TYPE" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-DX-A2J1                   TCGA-DX-A2J4 
"AMP PEAK 11(17P12) WILD-TYPE" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-FX-A2QS                   TCGA-FX-A3NJ 
"AMP PEAK 11(17P12) WILD-TYPE" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-FX-A3RE                   TCGA-FX-A48G 
      "AMP PEAK 11(17P12) CNV"       "AMP PEAK 11(17P12) CNV" 
                  TCGA-HB-A2OT                   TCGA-HB-A3YV 
"AMP PEAK 11(17P12) WILD-TYPE"       "AMP PEAK 11(17P12) CNV" 
                  TCGA-HB-A43Z                   TCGA-IS-A3KA 
"AMP PEAK 11(17P12) WILD-TYPE" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-KF-A41W 
"AMP PEAK 11(17P12) WILD-TYPE"       "AMP PEAK 11(17P12) CNV" 
                  TCGA-DX-A1KW                   TCGA-DX-A1KX 
      "AMP PEAK 11(17P12) CNV" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-DX-A1KY                   TCGA-DX-A1KZ 
      "AMP PEAK 11(17P12) CNV" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-DX-A1L0                   TCGA-DX-A1L1 
"AMP PEAK 11(17P12) WILD-TYPE"       "AMP PEAK 11(17P12) CNV" 
                  TCGA-DX-A1L2                   TCGA-DX-A1L3 
      "AMP PEAK 11(17P12) CNV" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-DX-A2IZ                   TCGA-DX-A2J0 
"AMP PEAK 11(17P12) WILD-TYPE" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-DX-A2J1                   TCGA-DX-A2J4 
"AMP PEAK 11(17P12) WILD-TYPE" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-FX-A2QS                   TCGA-FX-A3NJ 
"AMP PEAK 11(17P12) WILD-TYPE" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-FX-A3RE                   TCGA-FX-A48G 
      "AMP PEAK 11(17P12) CNV"       "AMP PEAK 11(17P12) CNV" 
                  TCGA-HB-A2OT                   TCGA-HB-A3YV 
"AMP PEAK 11(17P12) WILD-TYPE"       "AMP PEAK 11(17P12) CNV" 
                  TCGA-HB-A43Z                   TCGA-IS-A3KA 
"AMP PEAK 11(17P12) WILD-TYPE" "AMP PEAK 11(17P12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-KF-A41W 
"AMP PEAK 11(17P12) WILD-TYPE"       "AMP PEAK 11(17P12) CNV" 
[1] "hr=" "1.5"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 11(17P12) CNV          3    5
  AMP PEAK 11(17P12) WILD-TYPE    7    7
        clus
vv       AMP PEAK 11(17P12) CNV AMP PEAK 11(17P12) WILD-TYPE
  FEMALE                      3                            7
  MALE                        5                            7

Clustering(12) Variable = Amp Peak 12(19p13.2)
D12V1, survival
                                sevent
clus2                            0 1
  AMP PEAK 12(19P13.2) CNV       8 3
  AMP PEAK 12(19P13.2) WILD-TYPE 8 3
      AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE 
                            11                             11 
      AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE 
                             3                              3 
$`AMP PEAK 12(19P13.2) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 
        2.04        27.19        12.85        24.49        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A2J0 TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV 
       31.56         9.70         0.07         0.07         4.54 

$`AMP PEAK 12(19P13.2) WILD-TYPE`
TCGA-DX-A1L0 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3NJ 
       18.51         8.55        53.26        43.04         0.46         0.10 
TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-KF-A41W 
       26.89         4.14        13.58         5.88         5.95 

      AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE 
                          0.07                           0.10 
      AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE 
                         46.68                          53.26 
      AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE 
                         12.85                           8.55 
[1] "0.1 - 46.7 (12.8)" "0.1 - 53.3 (8.6)" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "AMP PEAK 12(19P13.2) CNV"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
      "AMP PEAK 12(19P13.2) CNV"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"AMP PEAK 12(19P13.2) WILD-TYPE"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "AMP PEAK 12(19P13.2) CNV"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"AMP PEAK 12(19P13.2) WILD-TYPE"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"AMP PEAK 12(19P13.2) WILD-TYPE" "AMP PEAK 12(19P13.2) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"AMP PEAK 12(19P13.2) WILD-TYPE" "AMP PEAK 12(19P13.2) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "AMP PEAK 12(19P13.2) CNV"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"AMP PEAK 12(19P13.2) WILD-TYPE"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"AMP PEAK 12(19P13.2) WILD-TYPE" "AMP PEAK 12(19P13.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"AMP PEAK 12(19P13.2) WILD-TYPE" "AMP PEAK 12(19P13.2) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "AMP PEAK 12(19P13.2) CNV"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
      "AMP PEAK 12(19P13.2) CNV"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"AMP PEAK 12(19P13.2) WILD-TYPE"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "AMP PEAK 12(19P13.2) CNV"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"AMP PEAK 12(19P13.2) WILD-TYPE"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"AMP PEAK 12(19P13.2) WILD-TYPE" "AMP PEAK 12(19P13.2) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"AMP PEAK 12(19P13.2) WILD-TYPE" "AMP PEAK 12(19P13.2) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "AMP PEAK 12(19P13.2) CNV"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"AMP PEAK 12(19P13.2) WILD-TYPE"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"AMP PEAK 12(19P13.2) WILD-TYPE" "AMP PEAK 12(19P13.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"AMP PEAK 12(19P13.2) WILD-TYPE" "AMP PEAK 12(19P13.2) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "AMP PEAK 12(19P13.2) CNV"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
      "AMP PEAK 12(19P13.2) CNV"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"AMP PEAK 12(19P13.2) WILD-TYPE"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "AMP PEAK 12(19P13.2) CNV"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"AMP PEAK 12(19P13.2) WILD-TYPE"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"AMP PEAK 12(19P13.2) WILD-TYPE" "AMP PEAK 12(19P13.2) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"AMP PEAK 12(19P13.2) WILD-TYPE" "AMP PEAK 12(19P13.2) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "AMP PEAK 12(19P13.2) CNV"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"AMP PEAK 12(19P13.2) WILD-TYPE"       "AMP PEAK 12(19P13.2) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"AMP PEAK 12(19P13.2) WILD-TYPE" "AMP PEAK 12(19P13.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"AMP PEAK 12(19P13.2) WILD-TYPE" "AMP PEAK 12(19P13.2) WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(19P13.2) CNV          4    7
  AMP PEAK 12(19P13.2) WILD-TYPE    6    5
        clus
vv       AMP PEAK 12(19P13.2) CNV AMP PEAK 12(19P13.2) WILD-TYPE
  FEMALE                        4                              6
  MALE                          7                              5

Clustering(13) Variable = Amp Peak 13(Xq21.1)
D13V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 13(XQ21.1) CNV        4  3
  AMP PEAK 13(XQ21.1) WILD-TYPE 12  3
      AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE 
                            7                            15 
      AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE 
                            3                             3 
$`AMP PEAK 13(XQ21.1) CNV`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-FX-A2QS TCGA-HB-A43Z 
       12.85        24.49        18.51        46.68         0.46         4.14 
TCGA-IS-A3KA 
       13.58 

$`AMP PEAK 13(XQ21.1) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 
        2.04        27.19        42.44        31.56         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
       53.26        43.04         0.10         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-IW-A3M5 TCGA-KF-A41W 
        4.54         5.88         5.95 

      AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE 
                         0.46                          0.07 
      AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE 
                        46.68                         53.26 
      AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE 
                        13.58                          8.55 
[1] "0.5 - 46.7 (13.6)" "0.1 - 53.3 (8.6)" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "AMP PEAK 13(XQ21.1) CNV"       "AMP PEAK 13(XQ21.1) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "AMP PEAK 13(XQ21.1) CNV"       "AMP PEAK 13(XQ21.1) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK 13(XQ21.1) CNV" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "AMP PEAK 13(XQ21.1) CNV"       "AMP PEAK 13(XQ21.1) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "AMP PEAK 13(XQ21.1) CNV"       "AMP PEAK 13(XQ21.1) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "AMP PEAK 13(XQ21.1) CNV"       "AMP PEAK 13(XQ21.1) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK 13(XQ21.1) CNV" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "AMP PEAK 13(XQ21.1) CNV"       "AMP PEAK 13(XQ21.1) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "AMP PEAK 13(XQ21.1) CNV"       "AMP PEAK 13(XQ21.1) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "AMP PEAK 13(XQ21.1) CNV"       "AMP PEAK 13(XQ21.1) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "AMP PEAK 13(XQ21.1) CNV" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "AMP PEAK 13(XQ21.1) CNV"       "AMP PEAK 13(XQ21.1) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"AMP PEAK 13(XQ21.1) WILD-TYPE" "AMP PEAK 13(XQ21.1) WILD-TYPE" 
[1] "hr=" "1.7"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(XQ21.1) CNV          3    4
  AMP PEAK 13(XQ21.1) WILD-TYPE    7    8
        clus
vv       AMP PEAK 13(XQ21.1) CNV AMP PEAK 13(XQ21.1) WILD-TYPE
  FEMALE                       3                             7
  MALE                         4                             8

Clustering(14) Variable = Del Peak  1(1p36.32)
D14V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.32) CNV        4  1
  DEL PEAK  1(1P36.32) WILD-TYPE 12  5
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                             5                             17 
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                             1                              5 
$`DEL PEAK  1(1P36.32) CNV`
TCGA-DX-A1KX TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z TCGA-IS-A3KA 
       27.19         0.07         0.07         4.14        13.58 

$`DEL PEAK  1(1P36.32) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
        2.04        12.85        24.49        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A2QS 
       31.56         8.55         9.70        53.26        43.04         0.46 
TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IW-A3M5 TCGA-KF-A41W 
        0.10        26.89         4.54         5.88         5.95 

      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                          0.07                           0.10 
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                         27.19                          53.26 
      DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE 
                          4.14                          12.85 
[1] "0.1 - 27.2 (4.1)"  "0.1 - 53.3 (12.8)"
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK  1(1P36.32) WILD-TYPE"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK  1(1P36.32) CNV"       "DEL PEAK  1(1P36.32) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
[1] "hr=" "1.1"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) CNV          5    0
  DEL PEAK  1(1P36.32) WILD-TYPE    5   12
        clus
vv       DEL PEAK  1(1P36.32) CNV DEL PEAK  1(1P36.32) WILD-TYPE
  FEMALE                        5                              5
  MALE                          0                             12

Clustering(15) Variable = Del Peak  2(1p32.3)
D15V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(1P32.3) CNV        5  1
  DEL PEAK  2(1P32.3) WILD-TYPE 11  5
      DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE 
                            6                            16 
      DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE 
                            1                             5 
$`DEL PEAK  2(1P32.3) CNV`
TCGA-DX-A1KX TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-FX-A3RE TCGA-FX-A48G TCGA-IS-A3KA 
       27.19        46.68        42.44         0.07         0.07        13.58 

$`DEL PEAK  2(1P32.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 TCGA-DX-A2IZ 
        2.04        12.85        24.49        18.51        31.56         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-HB-A2OT 
        9.70        53.26        43.04         0.46         0.10        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IW-A3M5 TCGA-KF-A41W 
        4.54         4.14         5.88         5.95 

      DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE 
                         0.07                          0.10 
      DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE 
                        46.68                         53.26 
      DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE 
                       20.385                         9.125 
[1] "0.1 - 46.7 (20.4)" "0.1 - 53.3 (9.1)" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK  2(1P32.3) WILD-TYPE"       "DEL PEAK  2(1P32.3) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK  2(1P32.3) WILD-TYPE"       "DEL PEAK  2(1P32.3) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK  2(1P32.3) CNV" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK  2(1P32.3) CNV"       "DEL PEAK  2(1P32.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK  2(1P32.3) WILD-TYPE"       "DEL PEAK  2(1P32.3) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK  2(1P32.3) WILD-TYPE"       "DEL PEAK  2(1P32.3) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK  2(1P32.3) WILD-TYPE"       "DEL PEAK  2(1P32.3) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK  2(1P32.3) CNV" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK  2(1P32.3) CNV"       "DEL PEAK  2(1P32.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK  2(1P32.3) WILD-TYPE"       "DEL PEAK  2(1P32.3) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK  2(1P32.3) WILD-TYPE"       "DEL PEAK  2(1P32.3) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK  2(1P32.3) WILD-TYPE"       "DEL PEAK  2(1P32.3) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK  2(1P32.3) CNV" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK  2(1P32.3) CNV"       "DEL PEAK  2(1P32.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK  2(1P32.3) WILD-TYPE"       "DEL PEAK  2(1P32.3) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK  2(1P32.3) WILD-TYPE" "DEL PEAK  2(1P32.3) WILD-TYPE" 
[1] "hr=" "2.4"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P32.3) CNV          4    2
  DEL PEAK  2(1P32.3) WILD-TYPE    6   10
        clus
vv       DEL PEAK  2(1P32.3) CNV DEL PEAK  2(1P32.3) WILD-TYPE
  FEMALE                       4                             6
  MALE                         2                            10

Clustering(16) Variable = Del Peak  3(1q44)
D16V1, survival
                             sevent
clus2                         0 1
  DEL PEAK  3(1Q44) CNV       8 4
  DEL PEAK  3(1Q44) WILD-TYPE 8 2
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                         12                          10 
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                          4                           2 
$`DEL PEAK  3(1Q44) CNV`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       27.19        12.85        24.49        18.51        46.68        42.44 
TCGA-FX-A2QS TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IS-A3KA TCGA-KF-A41W 
        0.46         0.07        26.89         4.54        13.58         5.95 

$`DEL PEAK  3(1Q44) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
        2.04        31.56         8.55         9.70        53.26        43.04 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A43Z TCGA-IW-A3M5 
        0.10         0.07         4.14         5.88 

      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                       0.07                        0.07 
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                      46.68                       53.26 
      DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE 
                     16.045                       7.215 
[1] "0.1 - 46.7 (16.0)" "0.1 - 53.3 (7.2)" 
                 TCGA-DX-A1KW                  TCGA-DX-A1KX 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-DX-A1KY                  TCGA-DX-A1KZ 
      "DEL PEAK  3(1Q44) CNV"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-DX-A1L0                  TCGA-DX-A1L1 
      "DEL PEAK  3(1Q44) CNV"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-DX-A1L2                  TCGA-DX-A1L3 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A2IZ                  TCGA-DX-A2J0 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A2J1                  TCGA-DX-A2J4 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FX-A2QS                  TCGA-FX-A3NJ 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FX-A3RE                  TCGA-FX-A48G 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-HB-A2OT                  TCGA-HB-A3YV 
      "DEL PEAK  3(1Q44) CNV"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-HB-A43Z                  TCGA-IS-A3KA 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-IW-A3M5                  TCGA-KF-A41W 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-DX-A1KW                  TCGA-DX-A1KX 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-DX-A1KY                  TCGA-DX-A1KZ 
      "DEL PEAK  3(1Q44) CNV"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-DX-A1L0                  TCGA-DX-A1L1 
      "DEL PEAK  3(1Q44) CNV"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-DX-A1L2                  TCGA-DX-A1L3 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A2IZ                  TCGA-DX-A2J0 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A2J1                  TCGA-DX-A2J4 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FX-A2QS                  TCGA-FX-A3NJ 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FX-A3RE                  TCGA-FX-A48G 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-HB-A2OT                  TCGA-HB-A3YV 
      "DEL PEAK  3(1Q44) CNV"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-HB-A43Z                  TCGA-IS-A3KA 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-IW-A3M5                  TCGA-KF-A41W 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-DX-A1KW                  TCGA-DX-A1KX 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-DX-A1KY                  TCGA-DX-A1KZ 
      "DEL PEAK  3(1Q44) CNV"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-DX-A1L0                  TCGA-DX-A1L1 
      "DEL PEAK  3(1Q44) CNV"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-DX-A1L2                  TCGA-DX-A1L3 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A2IZ                  TCGA-DX-A2J0 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-DX-A2J1                  TCGA-DX-A2J4 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FX-A2QS                  TCGA-FX-A3NJ 
      "DEL PEAK  3(1Q44) CNV" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FX-A3RE                  TCGA-FX-A48G 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-HB-A2OT                  TCGA-HB-A3YV 
      "DEL PEAK  3(1Q44) CNV"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-HB-A43Z                  TCGA-IS-A3KA 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
                 TCGA-IW-A3M5                  TCGA-KF-A41W 
"DEL PEAK  3(1Q44) WILD-TYPE"       "DEL PEAK  3(1Q44) CNV" 
[1] "hr=" "1"  
D16V2, continuous
D16V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q44) CNV          6    6
  DEL PEAK  3(1Q44) WILD-TYPE    4    6
        clus
vv       DEL PEAK  3(1Q44) CNV DEL PEAK  3(1Q44) WILD-TYPE
  FEMALE                     6                           4
  MALE                       6                           6

Clustering(17) Variable = Del Peak  4(2q37.3)
D17V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(2Q37.3) CNV        6  4
  DEL PEAK  4(2Q37.3) WILD-TYPE 10  2
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                           10                            12 
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                            4                             2 
$`DEL PEAK  4(2Q37.3) CNV`
TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-FX-A3RE TCGA-FX-A48G 
       12.85        18.51        46.68        42.44         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IS-A3KA TCGA-KF-A41W 
       26.89         4.54        13.58         5.95 

$`DEL PEAK  4(2Q37.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 
        2.04        27.19        24.49        31.56         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-HB-A43Z TCGA-IW-A3M5 
       53.26        43.04         0.46         0.10         4.14         5.88 

      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                         0.07                          0.10 
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                        46.68                         53.26 
      DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE 
                       13.215                         9.125 
[1] "0.1 - 46.7 (13.2)" "0.1 - 53.3 (9.1)" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "DEL PEAK  4(2Q37.3) CNV" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "DEL PEAK  4(2Q37.3) CNV"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK  4(2Q37.3) CNV" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK  4(2Q37.3) CNV"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK  4(2Q37.3) CNV"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK  4(2Q37.3) WILD-TYPE"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK  4(2Q37.3) WILD-TYPE"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "DEL PEAK  4(2Q37.3) CNV" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "DEL PEAK  4(2Q37.3) CNV"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK  4(2Q37.3) CNV" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK  4(2Q37.3) CNV"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK  4(2Q37.3) CNV"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK  4(2Q37.3) WILD-TYPE"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK  4(2Q37.3) WILD-TYPE"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "DEL PEAK  4(2Q37.3) CNV" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "DEL PEAK  4(2Q37.3) CNV"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK  4(2Q37.3) CNV" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK  4(2Q37.3) CNV"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK  4(2Q37.3) CNV"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK  4(2Q37.3) WILD-TYPE"       "DEL PEAK  4(2Q37.3) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK  4(2Q37.3) WILD-TYPE"       "DEL PEAK  4(2Q37.3) CNV" 
[1] "hr=" "2.1"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q37.3) CNV          5    5
  DEL PEAK  4(2Q37.3) WILD-TYPE    5    7
        clus
vv       DEL PEAK  4(2Q37.3) CNV DEL PEAK  4(2Q37.3) WILD-TYPE
  FEMALE                       5                             5
  MALE                         5                             7

Clustering(18) Variable = Del Peak  5(3p21.31)
D18V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  5(3P21.31) CNV        3  4
  DEL PEAK  5(3P21.31) WILD-TYPE 13  2
      DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE 
                             7                             15 
      DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE 
                             4                              2 
$`DEL PEAK  5(3P21.31) CNV`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-FX-A3RE TCGA-HB-A3YV 
       27.19        12.85        18.51        42.44         0.07         4.54 
TCGA-IW-A3M5 
        5.88 

$`DEL PEAK  5(3P21.31) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 
        2.04        24.49        46.68        31.56         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A2OT 
       53.26        43.04         0.46         0.10         0.07        26.89 
TCGA-HB-A43Z TCGA-IS-A3KA TCGA-KF-A41W 
        4.14        13.58         5.95 

      DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE 
                          0.07                           0.07 
      DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE 
                         42.44                          53.26 
      DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE 
                         12.85                           9.70 
[1] "0.1 - 42.4 (12.8)" "0.1 - 53.3 (9.7)" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK  5(3P21.31) WILD-TYPE"       "DEL PEAK  5(3P21.31) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK  5(3P21.31) WILD-TYPE"       "DEL PEAK  5(3P21.31) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK  5(3P21.31) WILD-TYPE"       "DEL PEAK  5(3P21.31) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK  5(3P21.31) WILD-TYPE"       "DEL PEAK  5(3P21.31) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK  5(3P21.31) WILD-TYPE"       "DEL PEAK  5(3P21.31) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK  5(3P21.31) WILD-TYPE"       "DEL PEAK  5(3P21.31) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK  5(3P21.31) WILD-TYPE" "DEL PEAK  5(3P21.31) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK  5(3P21.31) CNV" "DEL PEAK  5(3P21.31) WILD-TYPE" 
[1] "hr=" "3.9"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  5(3P21.31) CNV          3    4
  DEL PEAK  5(3P21.31) WILD-TYPE    7    8
        clus
vv       DEL PEAK  5(3P21.31) CNV DEL PEAK  5(3P21.31) WILD-TYPE
  FEMALE                        3                              7
  MALE                          4                              8

Clustering(19) Variable = Del Peak  6(3q25.1)
D19V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(3Q25.1) CNV        6  3
  DEL PEAK  6(3Q25.1) WILD-TYPE 10  3
      DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE 
                            9                            13 
      DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE 
                            3                             3 
$`DEL PEAK  6(3Q25.1) CNV`
TCGA-DX-A1KW TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-FX-A2QS TCGA-FX-A3RE 
        2.04        18.51        46.68        42.44         0.46         0.07 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IW-A3M5 
        4.54         4.14         5.88 

$`DEL PEAK  6(3Q25.1) WILD-TYPE`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 
       27.19        12.85        24.49        31.56         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A2OT TCGA-IS-A3KA 
       53.26        43.04         0.10         0.07        26.89        13.58 
TCGA-KF-A41W 
        5.95 

      DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE 
                         0.07                          0.07 
      DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE 
                        46.68                         53.26 
      DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE 
                         4.54                         13.58 
[1] "0.1 - 46.7 (4.5)"  "0.1 - 53.3 (13.6)"
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK  6(3Q25.1) WILD-TYPE" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "DEL PEAK  6(3Q25.1) CNV"       "DEL PEAK  6(3Q25.1) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK  6(3Q25.1) WILD-TYPE" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  6(3Q25.1) WILD-TYPE" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"DEL PEAK  6(3Q25.1) WILD-TYPE"       "DEL PEAK  6(3Q25.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK  6(3Q25.1) WILD-TYPE" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "DEL PEAK  6(3Q25.1) CNV"       "DEL PEAK  6(3Q25.1) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK  6(3Q25.1) WILD-TYPE" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  6(3Q25.1) WILD-TYPE" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"DEL PEAK  6(3Q25.1) WILD-TYPE"       "DEL PEAK  6(3Q25.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK  6(3Q25.1) WILD-TYPE" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "DEL PEAK  6(3Q25.1) CNV"       "DEL PEAK  6(3Q25.1) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK  6(3Q25.1) WILD-TYPE" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  6(3Q25.1) WILD-TYPE" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"DEL PEAK  6(3Q25.1) WILD-TYPE"       "DEL PEAK  6(3Q25.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK  6(3Q25.1) CNV" "DEL PEAK  6(3Q25.1) WILD-TYPE" 
[1] "hr=" "2.5"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(3Q25.1) CNV          4    5
  DEL PEAK  6(3Q25.1) WILD-TYPE    6    7
        clus
vv       DEL PEAK  6(3Q25.1) CNV DEL PEAK  6(3Q25.1) WILD-TYPE
  FEMALE                       4                             6
  MALE                         5                             7

Clustering(20) Variable = Del Peak  7(4q35.1)
D20V1, survival
                               sevent
clus2                           0 1
  DEL PEAK  7(4Q35.1) CNV       7 3
  DEL PEAK  7(4Q35.1) WILD-TYPE 9 3
      DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE 
                           10                            12 
      DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE 
                            3                             3 
$`DEL PEAK  7(4Q35.1) CNV`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A2IZ TCGA-FX-A2QS TCGA-HB-A2OT 
       27.19        12.85        46.68         8.55         0.46        26.89 
TCGA-HB-A43Z TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-KF-A41W 
        4.14        13.58         5.88         5.95 

$`DEL PEAK  7(4Q35.1) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2J0 
        2.04        24.49        18.51        42.44        31.56         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV 
       53.26        43.04         0.10         0.07         0.07         4.54 

      DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE 
                         0.46                          0.07 
      DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE 
                        46.68                         53.26 
      DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE 
                       10.700                        14.105 
[1] "0.5 - 46.7 (10.7)" "0.1 - 53.3 (14.1)"
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK  7(4Q35.1) WILD-TYPE"       "DEL PEAK  7(4Q35.1) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "DEL PEAK  7(4Q35.1) CNV" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK  7(4Q35.1) WILD-TYPE"       "DEL PEAK  7(4Q35.1) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"DEL PEAK  7(4Q35.1) WILD-TYPE" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
      "DEL PEAK  7(4Q35.1) CNV" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  7(4Q35.1) WILD-TYPE" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK  7(4Q35.1) CNV" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"DEL PEAK  7(4Q35.1) WILD-TYPE" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK  7(4Q35.1) CNV" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "DEL PEAK  7(4Q35.1) CNV"       "DEL PEAK  7(4Q35.1) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK  7(4Q35.1) CNV"       "DEL PEAK  7(4Q35.1) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK  7(4Q35.1) WILD-TYPE"       "DEL PEAK  7(4Q35.1) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "DEL PEAK  7(4Q35.1) CNV" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK  7(4Q35.1) WILD-TYPE"       "DEL PEAK  7(4Q35.1) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"DEL PEAK  7(4Q35.1) WILD-TYPE" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
      "DEL PEAK  7(4Q35.1) CNV" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  7(4Q35.1) WILD-TYPE" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK  7(4Q35.1) CNV" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"DEL PEAK  7(4Q35.1) WILD-TYPE" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK  7(4Q35.1) CNV" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "DEL PEAK  7(4Q35.1) CNV"       "DEL PEAK  7(4Q35.1) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK  7(4Q35.1) CNV"       "DEL PEAK  7(4Q35.1) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK  7(4Q35.1) WILD-TYPE"       "DEL PEAK  7(4Q35.1) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "DEL PEAK  7(4Q35.1) CNV" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK  7(4Q35.1) WILD-TYPE"       "DEL PEAK  7(4Q35.1) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"DEL PEAK  7(4Q35.1) WILD-TYPE" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
      "DEL PEAK  7(4Q35.1) CNV" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  7(4Q35.1) WILD-TYPE" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK  7(4Q35.1) CNV" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"DEL PEAK  7(4Q35.1) WILD-TYPE" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK  7(4Q35.1) CNV" "DEL PEAK  7(4Q35.1) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "DEL PEAK  7(4Q35.1) CNV"       "DEL PEAK  7(4Q35.1) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK  7(4Q35.1) CNV"       "DEL PEAK  7(4Q35.1) CNV" 
[1] "hr=" "1.3"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q35.1) CNV          7    3
  DEL PEAK  7(4Q35.1) WILD-TYPE    3    9
        clus
vv       DEL PEAK  7(4Q35.1) CNV DEL PEAK  7(4Q35.1) WILD-TYPE
  FEMALE                       7                             3
  MALE                         3                             9

Clustering(21) Variable = Del Peak  8(5q23.3)
D21V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(5Q23.3) CNV        4  0
  DEL PEAK  8(5Q23.3) WILD-TYPE 12  6
      DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE 
                            4                            18 
      DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE 
                            0                             6 
$`DEL PEAK  8(5Q23.3) CNV`
TCGA-FX-A2QS TCGA-FX-A48G TCGA-HB-A2OT TCGA-KF-A41W 
        0.46         0.07        26.89         5.95 

$`DEL PEAK  8(5Q23.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
        2.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       42.44        31.56         8.55         9.70        53.26        43.04 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IS-A3KA TCGA-IW-A3M5 
        0.10         0.07         4.54         4.14        13.58         5.88 

      DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE 
                         0.07                          0.07 
      DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE 
                        26.89                         53.26 
      DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE 
                        3.205                        13.215 
[1] "0.1 - 26.9 (3.2)"  "0.1 - 53.3 (13.2)"
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK  8(5Q23.3) CNV" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"DEL PEAK  8(5Q23.3) WILD-TYPE"       "DEL PEAK  8(5Q23.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK  8(5Q23.3) CNV" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK  8(5Q23.3) WILD-TYPE"       "DEL PEAK  8(5Q23.3) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK  8(5Q23.3) CNV" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"DEL PEAK  8(5Q23.3) WILD-TYPE"       "DEL PEAK  8(5Q23.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK  8(5Q23.3) CNV" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK  8(5Q23.3) WILD-TYPE"       "DEL PEAK  8(5Q23.3) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK  8(5Q23.3) CNV" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"DEL PEAK  8(5Q23.3) WILD-TYPE"       "DEL PEAK  8(5Q23.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK  8(5Q23.3) CNV" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK  8(5Q23.3) WILD-TYPE" "DEL PEAK  8(5Q23.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK  8(5Q23.3) WILD-TYPE"       "DEL PEAK  8(5Q23.3) CNV" 
[1] "hr="     "2.2e+08"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(5Q23.3) CNV          4    0
  DEL PEAK  8(5Q23.3) WILD-TYPE    6   12
        clus
vv       DEL PEAK  8(5Q23.3) CNV DEL PEAK  8(5Q23.3) WILD-TYPE
  FEMALE                       4                             6
  MALE                         0                            12

Clustering(22) Variable = Del Peak  9(6q15)
D22V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  9(6Q15) CNV        3  1
  DEL PEAK  9(6Q15) WILD-TYPE 13  5
      DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE 
                          4                          18 
      DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE 
                          1                           5 
$`DEL PEAK  9(6Q15) CNV`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-FX-A3RE TCGA-HB-A43Z 
       12.85        24.49         0.07         4.14 

$`DEL PEAK  9(6Q15) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
        2.04        27.19        18.51        46.68        42.44        31.56 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3NJ 
        8.55         9.70        53.26        43.04         0.46         0.10 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-KF-A41W 
        0.07        26.89         4.54        13.58         5.88         5.95 

      DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE 
                       0.07                        0.07 
      DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE 
                      24.49                       53.26 
      DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE 
                      8.495                      11.640 
[1] "0.1 - 24.5 (8.5)"  "0.1 - 53.3 (11.6)"
                 TCGA-DX-A1KW                  TCGA-DX-A1KX 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A1KY                  TCGA-DX-A1KZ 
      "DEL PEAK  9(6Q15) CNV"       "DEL PEAK  9(6Q15) CNV" 
                 TCGA-DX-A1L0                  TCGA-DX-A1L1 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A1L2                  TCGA-DX-A1L3 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A2IZ                  TCGA-DX-A2J0 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A2J1                  TCGA-DX-A2J4 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-FX-A2QS                  TCGA-FX-A3NJ 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-FX-A3RE                  TCGA-FX-A48G 
      "DEL PEAK  9(6Q15) CNV" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-HB-A2OT                  TCGA-HB-A3YV 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-HB-A43Z                  TCGA-IS-A3KA 
      "DEL PEAK  9(6Q15) CNV" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-IW-A3M5                  TCGA-KF-A41W 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A1KW                  TCGA-DX-A1KX 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A1KY                  TCGA-DX-A1KZ 
      "DEL PEAK  9(6Q15) CNV"       "DEL PEAK  9(6Q15) CNV" 
                 TCGA-DX-A1L0                  TCGA-DX-A1L1 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A1L2                  TCGA-DX-A1L3 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A2IZ                  TCGA-DX-A2J0 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A2J1                  TCGA-DX-A2J4 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-FX-A2QS                  TCGA-FX-A3NJ 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-FX-A3RE                  TCGA-FX-A48G 
      "DEL PEAK  9(6Q15) CNV" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-HB-A2OT                  TCGA-HB-A3YV 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-HB-A43Z                  TCGA-IS-A3KA 
      "DEL PEAK  9(6Q15) CNV" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-IW-A3M5                  TCGA-KF-A41W 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A1KW                  TCGA-DX-A1KX 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A1KY                  TCGA-DX-A1KZ 
      "DEL PEAK  9(6Q15) CNV"       "DEL PEAK  9(6Q15) CNV" 
                 TCGA-DX-A1L0                  TCGA-DX-A1L1 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A1L2                  TCGA-DX-A1L3 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A2IZ                  TCGA-DX-A2J0 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-DX-A2J1                  TCGA-DX-A2J4 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-FX-A2QS                  TCGA-FX-A3NJ 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-FX-A3RE                  TCGA-FX-A48G 
      "DEL PEAK  9(6Q15) CNV" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-HB-A2OT                  TCGA-HB-A3YV 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-HB-A43Z                  TCGA-IS-A3KA 
      "DEL PEAK  9(6Q15) CNV" "DEL PEAK  9(6Q15) WILD-TYPE" 
                 TCGA-IW-A3M5                  TCGA-KF-A41W 
"DEL PEAK  9(6Q15) WILD-TYPE" "DEL PEAK  9(6Q15) WILD-TYPE" 
[1] "hr=" "1.3"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  9(6Q15) CNV          2    2
  DEL PEAK  9(6Q15) WILD-TYPE    8   10
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  FEMALE                     2                           8
  MALE                       2                          10

Clustering(23) Variable = Del Peak 10(7q36.3)
D23V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(7Q36.3) CNV        3  3
  DEL PEAK 10(7Q36.3) WILD-TYPE 13  3
      DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE 
                            6                            16 
      DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE 
                            3                             3 
$`DEL PEAK 10(7Q36.3) CNV`
TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IW-A3M5 
       27.19        18.51        42.44         4.54         4.14         5.88 

$`DEL PEAK 10(7Q36.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A2IZ 
        2.04        12.85        24.49        46.68        31.56         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
        9.70        53.26        43.04         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-IS-A3KA TCGA-KF-A41W 
        0.07        26.89        13.58         5.95 

      DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE 
                         4.14                          0.07 
      DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE 
                        42.44                         53.26 
      DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE 
                       12.195                        11.275 
[1] "4.1 - 42.4 (12.2)" "0.1 - 53.3 (11.3)"
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK 10(7Q36.3) WILD-TYPE"       "DEL PEAK 10(7Q36.3) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "DEL PEAK 10(7Q36.3) CNV" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK 10(7Q36.3) CNV" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"DEL PEAK 10(7Q36.3) WILD-TYPE"       "DEL PEAK 10(7Q36.3) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "DEL PEAK 10(7Q36.3) CNV" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK 10(7Q36.3) CNV" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK 10(7Q36.3) WILD-TYPE"       "DEL PEAK 10(7Q36.3) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "DEL PEAK 10(7Q36.3) CNV" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK 10(7Q36.3) CNV" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"DEL PEAK 10(7Q36.3) WILD-TYPE"       "DEL PEAK 10(7Q36.3) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "DEL PEAK 10(7Q36.3) CNV" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK 10(7Q36.3) CNV" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK 10(7Q36.3) WILD-TYPE"       "DEL PEAK 10(7Q36.3) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "DEL PEAK 10(7Q36.3) CNV" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK 10(7Q36.3) CNV" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"DEL PEAK 10(7Q36.3) WILD-TYPE" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"DEL PEAK 10(7Q36.3) WILD-TYPE"       "DEL PEAK 10(7Q36.3) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "DEL PEAK 10(7Q36.3) CNV" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK 10(7Q36.3) CNV" "DEL PEAK 10(7Q36.3) WILD-TYPE" 
[1] "hr=" "2.5"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(7Q36.3) CNV          3    3
  DEL PEAK 10(7Q36.3) WILD-TYPE    7    9
        clus
vv       DEL PEAK 10(7Q36.3) CNV DEL PEAK 10(7Q36.3) WILD-TYPE
  FEMALE                       3                             7
  MALE                         3                             9

Clustering(24) Variable = Del Peak 11(8p23.2)
D24V1, survival
                               sevent
clus2                           0 1
  DEL PEAK 11(8P23.2) CNV       7 1
  DEL PEAK 11(8P23.2) WILD-TYPE 9 5
      DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE 
                            8                            14 
      DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE 
                            1                             5 
$`DEL PEAK 11(8P23.2) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-FX-A2QS 
        2.04        27.19        12.85        24.49        42.44         0.46 
TCGA-FX-A3RE TCGA-HB-A43Z 
        0.07         4.14 

$`DEL PEAK 11(8P23.2) WILD-TYPE`
TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
       18.51        46.68        31.56         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IS-A3KA 
       43.04         0.10         0.07        26.89         4.54        13.58 
TCGA-IW-A3M5 TCGA-KF-A41W 
        5.88         5.95 

      DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE 
                         0.07                          0.07 
      DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE 
                        42.44                         53.26 
      DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE 
                        8.495                        11.640 
[1] "0.1 - 42.4 (8.5)"  "0.1 - 53.3 (11.6)"
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
      "DEL PEAK 11(8P23.2) CNV"       "DEL PEAK 11(8P23.2) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "DEL PEAK 11(8P23.2) CNV"       "DEL PEAK 11(8P23.2) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK 11(8P23.2) CNV" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK 11(8P23.2) CNV" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK 11(8P23.2) CNV" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "DEL PEAK 11(8P23.2) CNV" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
      "DEL PEAK 11(8P23.2) CNV"       "DEL PEAK 11(8P23.2) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "DEL PEAK 11(8P23.2) CNV"       "DEL PEAK 11(8P23.2) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK 11(8P23.2) CNV" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK 11(8P23.2) CNV" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK 11(8P23.2) CNV" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "DEL PEAK 11(8P23.2) CNV" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
      "DEL PEAK 11(8P23.2) CNV"       "DEL PEAK 11(8P23.2) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "DEL PEAK 11(8P23.2) CNV"       "DEL PEAK 11(8P23.2) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK 11(8P23.2) CNV" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK 11(8P23.2) CNV" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK 11(8P23.2) CNV" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
      "DEL PEAK 11(8P23.2) CNV" "DEL PEAK 11(8P23.2) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK 11(8P23.2) WILD-TYPE" "DEL PEAK 11(8P23.2) WILD-TYPE" 
[1] "hr=" "2.2"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(8P23.2) CNV          4    4
  DEL PEAK 11(8P23.2) WILD-TYPE    6    8
        clus
vv       DEL PEAK 11(8P23.2) CNV DEL PEAK 11(8P23.2) WILD-TYPE
  FEMALE                       4                             6
  MALE                         4                             8

Clustering(25) Variable = Del Peak 12(9p21.3)
D25V1, survival
                               sevent
clus2                           0 1
  DEL PEAK 12(9P21.3) CNV       9 3
  DEL PEAK 12(9P21.3) WILD-TYPE 7 3
      DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE 
                           12                            10 
      DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE 
                            3                             3 
$`DEL PEAK 12(9P21.3) CNV`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       27.19        12.85        24.49        18.51        46.68        42.44 
TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-IW-A3M5 TCGA-KF-A41W 
        0.46         0.07         0.07        26.89         5.88         5.95 

$`DEL PEAK 12(9P21.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
        2.04        31.56         8.55         9.70        53.26        43.04 
TCGA-FX-A3NJ TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IS-A3KA 
        0.10         4.54         4.14        13.58 

      DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE 
                         0.07                          0.10 
      DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE 
                        46.68                         53.26 
      DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE 
                       15.680                         9.125 
[1] "0.1 - 46.7 (15.7)" "0.1 - 53.3 (9.1)" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK 12(9P21.3) WILD-TYPE"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "DEL PEAK 12(9P21.3) CNV"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "DEL PEAK 12(9P21.3) CNV"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK 12(9P21.3) CNV" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK 12(9P21.3) CNV" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK 12(9P21.3) CNV"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK 12(9P21.3) CNV" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK 12(9P21.3) CNV"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK 12(9P21.3) WILD-TYPE"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "DEL PEAK 12(9P21.3) CNV"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "DEL PEAK 12(9P21.3) CNV"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK 12(9P21.3) CNV" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK 12(9P21.3) CNV" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK 12(9P21.3) CNV"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK 12(9P21.3) CNV" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK 12(9P21.3) CNV"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK 12(9P21.3) WILD-TYPE"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
      "DEL PEAK 12(9P21.3) CNV"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
      "DEL PEAK 12(9P21.3) CNV"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK 12(9P21.3) CNV" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK 12(9P21.3) CNV" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK 12(9P21.3) CNV"       "DEL PEAK 12(9P21.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK 12(9P21.3) CNV" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK 12(9P21.3) WILD-TYPE" "DEL PEAK 12(9P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK 12(9P21.3) CNV"       "DEL PEAK 12(9P21.3) CNV" 
[1] "hr=" "1.6"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(9P21.3) CNV          7    5
  DEL PEAK 12(9P21.3) WILD-TYPE    3    7
        clus
vv       DEL PEAK 12(9P21.3) CNV DEL PEAK 12(9P21.3) WILD-TYPE
  FEMALE                       7                             3
  MALE                         5                             7

Clustering(26) Variable = Del Peak 13(9q34.3)
D26V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 13(9Q34.3) CNV        2  3
  DEL PEAK 13(9Q34.3) WILD-TYPE 14  3
      DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE 
                            5                            17 
      DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE 
                            3                             3 
$`DEL PEAK 13(9Q34.3) CNV`
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IS-A3KA TCGA-IW-A3M5 
        0.07        26.89         4.54        13.58         5.88 

$`DEL PEAK 13(9Q34.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
        2.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       42.44        31.56         8.55         9.70        53.26        43.04 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A43Z TCGA-KF-A41W 
        0.46         0.10         0.07         4.14         5.95 

      DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE 
                         0.07                          0.07 
      DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE 
                        26.89                         53.26 
      DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE 
                         5.88                         12.85 
[1] "0.1 - 26.9 (5.9)"  "0.1 - 53.3 (12.8)"
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"DEL PEAK 13(9Q34.3) WILD-TYPE"       "DEL PEAK 13(9Q34.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK 13(9Q34.3) CNV"       "DEL PEAK 13(9Q34.3) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK 13(9Q34.3) WILD-TYPE"       "DEL PEAK 13(9Q34.3) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK 13(9Q34.3) CNV" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"DEL PEAK 13(9Q34.3) WILD-TYPE"       "DEL PEAK 13(9Q34.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK 13(9Q34.3) CNV"       "DEL PEAK 13(9Q34.3) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK 13(9Q34.3) WILD-TYPE"       "DEL PEAK 13(9Q34.3) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK 13(9Q34.3) CNV" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
"DEL PEAK 13(9Q34.3) WILD-TYPE" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
"DEL PEAK 13(9Q34.3) WILD-TYPE"       "DEL PEAK 13(9Q34.3) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK 13(9Q34.3) CNV"       "DEL PEAK 13(9Q34.3) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK 13(9Q34.3) WILD-TYPE"       "DEL PEAK 13(9Q34.3) CNV" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
      "DEL PEAK 13(9Q34.3) CNV" "DEL PEAK 13(9Q34.3) WILD-TYPE" 
[1] "hr=" "4.5"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(9Q34.3) CNV          4    1
  DEL PEAK 13(9Q34.3) WILD-TYPE    6   11
        clus
vv       DEL PEAK 13(9Q34.3) CNV DEL PEAK 13(9Q34.3) WILD-TYPE
  FEMALE                       4                             6
  MALE                         1                            11

Clustering(27) Variable = Del Peak 14(10p15.3)
D27V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 14(10P15.3) CNV       8 3
  DEL PEAK 14(10P15.3) WILD-TYPE 8 3
      DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE 
                            11                             11 
      DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE 
                             3                              3 
$`DEL PEAK 14(10P15.3) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-FX-A2QS TCGA-FX-A3RE 
        2.04        27.19        18.51        42.44         0.46         0.07 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IW-A3M5 TCGA-KF-A41W 
       26.89         4.54         4.14         5.88         5.95 

$`DEL PEAK 14(10P15.3) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 
       12.85        24.49        46.68        31.56         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-FX-A48G TCGA-IS-A3KA 
       53.26        43.04         0.10         0.07        13.58 

      DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE 
                          0.07                           0.07 
      DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE 
                         42.44                          53.26 
      DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE 
                          5.88                          13.58 
[1] "0.1 - 42.4 (5.9)"  "0.1 - 53.3 (13.6)"
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 14(10P15.3) CNV"       "DEL PEAK 14(10P15.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 14(10P15.3) WILD-TYPE" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 14(10P15.3) WILD-TYPE" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 14(10P15.3) WILD-TYPE" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 14(10P15.3) CNV"       "DEL PEAK 14(10P15.3) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 14(10P15.3) CNV"       "DEL PEAK 14(10P15.3) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 14(10P15.3) CNV"       "DEL PEAK 14(10P15.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 14(10P15.3) WILD-TYPE" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 14(10P15.3) WILD-TYPE" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 14(10P15.3) WILD-TYPE" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 14(10P15.3) CNV"       "DEL PEAK 14(10P15.3) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 14(10P15.3) CNV"       "DEL PEAK 14(10P15.3) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 14(10P15.3) CNV"       "DEL PEAK 14(10P15.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 14(10P15.3) WILD-TYPE" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 14(10P15.3) WILD-TYPE" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 14(10P15.3) WILD-TYPE" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 14(10P15.3) CNV"       "DEL PEAK 14(10P15.3) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 14(10P15.3) CNV" "DEL PEAK 14(10P15.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 14(10P15.3) CNV"       "DEL PEAK 14(10P15.3) CNV" 
[1] "hr=" "1.5"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(10P15.3) CNV          7    4
  DEL PEAK 14(10P15.3) WILD-TYPE    3    8
        clus
vv       DEL PEAK 14(10P15.3) CNV DEL PEAK 14(10P15.3) WILD-TYPE
  FEMALE                        7                              3
  MALE                          4                              8

Clustering(28) Variable = Del Peak 15(11p15.5)
D28V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 15(11P15.5) CNV       8 3
  DEL PEAK 15(11P15.5) WILD-TYPE 8 3
      DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE 
                            11                             11 
      DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE 
                             3                              3 
$`DEL PEAK 15(11P15.5) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A2J0 TCGA-FX-A3RE 
        2.04        27.19        24.49        42.44         9.70         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IW-A3M5 
        0.07        26.89         4.54         4.14         5.88 

$`DEL PEAK 15(11P15.5) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J1 
       12.85        18.51        46.68        31.56         8.55        53.26 
TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-IS-A3KA TCGA-KF-A41W 
       43.04         0.46         0.10        13.58         5.95 

      DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE 
                          0.07                           0.10 
      DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE 
                         42.44                          53.26 
      DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE 
                          5.88                          13.58 
[1] "0.1 - 42.4 (5.9)"  "0.1 - 53.3 (13.6)"
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 15(11P15.5) CNV"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 15(11P15.5) WILD-TYPE"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"DEL PEAK 15(11P15.5) WILD-TYPE" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK 15(11P15.5) CNV" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 15(11P15.5) WILD-TYPE"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 15(11P15.5) WILD-TYPE" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 15(11P15.5) WILD-TYPE" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK 15(11P15.5) CNV"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 15(11P15.5) CNV"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 15(11P15.5) CNV" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 15(11P15.5) CNV" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 15(11P15.5) CNV"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 15(11P15.5) WILD-TYPE"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"DEL PEAK 15(11P15.5) WILD-TYPE" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK 15(11P15.5) CNV" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 15(11P15.5) WILD-TYPE"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 15(11P15.5) WILD-TYPE" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 15(11P15.5) WILD-TYPE" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK 15(11P15.5) CNV"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 15(11P15.5) CNV"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 15(11P15.5) CNV" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 15(11P15.5) CNV" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 15(11P15.5) CNV"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 15(11P15.5) WILD-TYPE"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"DEL PEAK 15(11P15.5) WILD-TYPE" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK 15(11P15.5) CNV" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 15(11P15.5) WILD-TYPE"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 15(11P15.5) WILD-TYPE" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 15(11P15.5) WILD-TYPE" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK 15(11P15.5) CNV"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 15(11P15.5) CNV"       "DEL PEAK 15(11P15.5) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 15(11P15.5) CNV" "DEL PEAK 15(11P15.5) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 15(11P15.5) CNV" "DEL PEAK 15(11P15.5) WILD-TYPE" 
[1] "hr=" "1.4"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(11P15.5) CNV          6    5
  DEL PEAK 15(11P15.5) WILD-TYPE    4    7
        clus
vv       DEL PEAK 15(11P15.5) CNV DEL PEAK 15(11P15.5) WILD-TYPE
  FEMALE                        6                              4
  MALE                          5                              7

Clustering(29) Variable = Del Peak 16(11q22.3)
D29V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 16(11Q22.3) CNV        6  5
  DEL PEAK 16(11Q22.3) WILD-TYPE 10  1
      DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE 
                            11                             11 
      DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE 
                             5                              1 
$`DEL PEAK 16(11Q22.3) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A2J0 TCGA-DX-A2J1 
        2.04        27.19        24.49        18.51         9.70        53.26 
TCGA-FX-A2QS TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IS-A3KA TCGA-IW-A3M5 
        0.46        26.89         4.54        13.58         5.88 

$`DEL PEAK 16(11Q22.3) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J4 
       12.85        46.68        42.44        31.56         8.55        43.04 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z TCGA-KF-A41W 
        0.10         0.07         0.07         4.14         5.95 

      DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE 
                          0.46                           0.07 
      DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE 
                         53.26                          46.68 
      DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE 
                         13.58                           8.55 
[1] "0.5 - 53.3 (13.6)" "0.1 - 46.7 (8.6)" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 16(11Q22.3) CNV"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 16(11Q22.3) WILD-TYPE"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 16(11Q22.3) CNV" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 16(11Q22.3) WILD-TYPE" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 16(11Q22.3) WILD-TYPE"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
      "DEL PEAK 16(11Q22.3) CNV" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 16(11Q22.3) CNV" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 16(11Q22.3) WILD-TYPE" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 16(11Q22.3) CNV"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 16(11Q22.3) WILD-TYPE"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 16(11Q22.3) CNV" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 16(11Q22.3) CNV"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 16(11Q22.3) WILD-TYPE"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 16(11Q22.3) CNV" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 16(11Q22.3) WILD-TYPE" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 16(11Q22.3) WILD-TYPE"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
      "DEL PEAK 16(11Q22.3) CNV" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 16(11Q22.3) CNV" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 16(11Q22.3) WILD-TYPE" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 16(11Q22.3) CNV"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 16(11Q22.3) WILD-TYPE"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 16(11Q22.3) CNV" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 16(11Q22.3) CNV"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 16(11Q22.3) WILD-TYPE"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 16(11Q22.3) CNV" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 16(11Q22.3) WILD-TYPE" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 16(11Q22.3) WILD-TYPE"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
      "DEL PEAK 16(11Q22.3) CNV" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 16(11Q22.3) CNV" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 16(11Q22.3) WILD-TYPE" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 16(11Q22.3) CNV"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 16(11Q22.3) WILD-TYPE"       "DEL PEAK 16(11Q22.3) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 16(11Q22.3) CNV" "DEL PEAK 16(11Q22.3) WILD-TYPE" 
[1] "hr=" "3.9"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(11Q22.3) CNV          5    6
  DEL PEAK 16(11Q22.3) WILD-TYPE    5    6
        clus
vv       DEL PEAK 16(11Q22.3) CNV DEL PEAK 16(11Q22.3) WILD-TYPE
  FEMALE                        5                              5
  MALE                          6                              6

Clustering(30) Variable = Del Peak 17(11q25)
D30V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 17(11Q25) CNV        6  6
  DEL PEAK 17(11Q25) WILD-TYPE 10  0
      DEL PEAK 17(11Q25) CNV DEL PEAK 17(11Q25) WILD-TYPE 
                          12                           10 
      DEL PEAK 17(11Q25) CNV DEL PEAK 17(11Q25) WILD-TYPE 
                           6                            0 
$`DEL PEAK 17(11Q25) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A2J0 
        2.04        27.19        12.85        24.49        18.51         9.70 
TCGA-DX-A2J1 TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-KF-A41W 
       53.26        26.89         4.54        13.58         5.88         5.95 

$`DEL PEAK 17(11Q25) WILD-TYPE`
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J4 TCGA-FX-A2QS 
       46.68        42.44        31.56         8.55        43.04         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z 
        0.10         0.07         0.07         4.14 

      DEL PEAK 17(11Q25) CNV DEL PEAK 17(11Q25) WILD-TYPE 
                        2.04                         0.07 
      DEL PEAK 17(11Q25) CNV DEL PEAK 17(11Q25) WILD-TYPE 
                       53.26                        46.68 
      DEL PEAK 17(11Q25) CNV DEL PEAK 17(11Q25) WILD-TYPE 
                      13.215                        6.345 
[1] "2.0 - 53.3 (13.2)" "0.1 - 46.7 (6.3)" 
                  TCGA-DX-A1KW                   TCGA-DX-A1KX 
      "DEL PEAK 17(11Q25) CNV"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-DX-A1KY                   TCGA-DX-A1KZ 
      "DEL PEAK 17(11Q25) CNV"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-DX-A1L0                   TCGA-DX-A1L1 
      "DEL PEAK 17(11Q25) CNV" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-DX-A1L2                   TCGA-DX-A1L3 
"DEL PEAK 17(11Q25) WILD-TYPE" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-DX-A2IZ                   TCGA-DX-A2J0 
"DEL PEAK 17(11Q25) WILD-TYPE"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-DX-A2J1                   TCGA-DX-A2J4 
      "DEL PEAK 17(11Q25) CNV" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-FX-A2QS                   TCGA-FX-A3NJ 
"DEL PEAK 17(11Q25) WILD-TYPE" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-FX-A3RE                   TCGA-FX-A48G 
"DEL PEAK 17(11Q25) WILD-TYPE" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-HB-A2OT                   TCGA-HB-A3YV 
      "DEL PEAK 17(11Q25) CNV"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-HB-A43Z                   TCGA-IS-A3KA 
"DEL PEAK 17(11Q25) WILD-TYPE"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-IW-A3M5                   TCGA-KF-A41W 
      "DEL PEAK 17(11Q25) CNV"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-DX-A1KW                   TCGA-DX-A1KX 
      "DEL PEAK 17(11Q25) CNV"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-DX-A1KY                   TCGA-DX-A1KZ 
      "DEL PEAK 17(11Q25) CNV"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-DX-A1L0                   TCGA-DX-A1L1 
      "DEL PEAK 17(11Q25) CNV" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-DX-A1L2                   TCGA-DX-A1L3 
"DEL PEAK 17(11Q25) WILD-TYPE" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-DX-A2IZ                   TCGA-DX-A2J0 
"DEL PEAK 17(11Q25) WILD-TYPE"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-DX-A2J1                   TCGA-DX-A2J4 
      "DEL PEAK 17(11Q25) CNV" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-FX-A2QS                   TCGA-FX-A3NJ 
"DEL PEAK 17(11Q25) WILD-TYPE" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-FX-A3RE                   TCGA-FX-A48G 
"DEL PEAK 17(11Q25) WILD-TYPE" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-HB-A2OT                   TCGA-HB-A3YV 
      "DEL PEAK 17(11Q25) CNV"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-HB-A43Z                   TCGA-IS-A3KA 
"DEL PEAK 17(11Q25) WILD-TYPE"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-IW-A3M5                   TCGA-KF-A41W 
      "DEL PEAK 17(11Q25) CNV"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-DX-A1KW                   TCGA-DX-A1KX 
      "DEL PEAK 17(11Q25) CNV"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-DX-A1KY                   TCGA-DX-A1KZ 
      "DEL PEAK 17(11Q25) CNV"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-DX-A1L0                   TCGA-DX-A1L1 
      "DEL PEAK 17(11Q25) CNV" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-DX-A1L2                   TCGA-DX-A1L3 
"DEL PEAK 17(11Q25) WILD-TYPE" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-DX-A2IZ                   TCGA-DX-A2J0 
"DEL PEAK 17(11Q25) WILD-TYPE"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-DX-A2J1                   TCGA-DX-A2J4 
      "DEL PEAK 17(11Q25) CNV" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-FX-A2QS                   TCGA-FX-A3NJ 
"DEL PEAK 17(11Q25) WILD-TYPE" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-FX-A3RE                   TCGA-FX-A48G 
"DEL PEAK 17(11Q25) WILD-TYPE" "DEL PEAK 17(11Q25) WILD-TYPE" 
                  TCGA-HB-A2OT                   TCGA-HB-A3YV 
      "DEL PEAK 17(11Q25) CNV"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-HB-A43Z                   TCGA-IS-A3KA 
"DEL PEAK 17(11Q25) WILD-TYPE"       "DEL PEAK 17(11Q25) CNV" 
                  TCGA-IW-A3M5                   TCGA-KF-A41W 
      "DEL PEAK 17(11Q25) CNV"       "DEL PEAK 17(11Q25) CNV" 
[1] "hr="     "1.1e+09"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 17(11Q25) CNV          5    7
  DEL PEAK 17(11Q25) WILD-TYPE    5    5
        clus
vv       DEL PEAK 17(11Q25) CNV DEL PEAK 17(11Q25) WILD-TYPE
  FEMALE                      5                            5
  MALE                        7                            5

Clustering(31) Variable = Del Peak 18(12p12.3)
D31V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(12P12.3) CNV        5  2
  DEL PEAK 18(12P12.3) WILD-TYPE 11  4
      DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE 
                             7                             15 
      DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE 
                             2                              4 
$`DEL PEAK 18(12P12.3) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A2J0 TCGA-FX-A3NJ 
        2.04        27.19        18.51        46.68         9.70         0.10 
TCGA-KF-A41W 
        5.95 

$`DEL PEAK 18(12P12.3) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J1 
       12.85        24.49        42.44        31.56         8.55        53.26 
TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV 
       43.04         0.46         0.07         0.07        26.89         4.54 
TCGA-HB-A43Z TCGA-IS-A3KA TCGA-IW-A3M5 
        4.14        13.58         5.88 

      DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE 
                          0.10                           0.07 
      DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE 
                         46.68                          53.26 
      DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE 
                          9.70                          12.85 
[1] "0.1 - 46.7 (9.7)"  "0.1 - 53.3 (12.8)"
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 18(12P12.3) CNV"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 18(12P12.3) CNV"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 18(12P12.3) WILD-TYPE"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 18(12P12.3) WILD-TYPE"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"DEL PEAK 18(12P12.3) WILD-TYPE"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 18(12P12.3) CNV"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 18(12P12.3) CNV"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 18(12P12.3) WILD-TYPE"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 18(12P12.3) WILD-TYPE"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"DEL PEAK 18(12P12.3) WILD-TYPE"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 18(12P12.3) CNV"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 18(12P12.3) CNV"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 18(12P12.3) WILD-TYPE"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 18(12P12.3) WILD-TYPE"       "DEL PEAK 18(12P12.3) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 18(12P12.3) WILD-TYPE" "DEL PEAK 18(12P12.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"DEL PEAK 18(12P12.3) WILD-TYPE"       "DEL PEAK 18(12P12.3) CNV" 
[1] "hr=" "1.1"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(12P12.3) CNV          2    5
  DEL PEAK 18(12P12.3) WILD-TYPE    8    7
        clus
vv       DEL PEAK 18(12P12.3) CNV DEL PEAK 18(12P12.3) WILD-TYPE
  FEMALE                        2                              8
  MALE                          5                              7

Clustering(32) Variable = Del Peak 19(13q14.2)
D32V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(13Q14.2) CNV       10  5
  DEL PEAK 19(13Q14.2) WILD-TYPE  6  1
      DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE 
                            15                              7 
      DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE 
                             5                              1 
$`DEL PEAK 19(13Q14.2) CNV`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A2J0 
       27.19        12.85        24.49        18.51        46.68         9.70 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV 
        0.46         0.10         0.07         0.07        26.89         4.54 
TCGA-HB-A43Z TCGA-IS-A3KA TCGA-KF-A41W 
        4.14        13.58         5.95 

$`DEL PEAK 19(13Q14.2) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 
        2.04        42.44        31.56         8.55        53.26        43.04 
TCGA-IW-A3M5 
        5.88 

      DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE 
                          0.07                           2.04 
      DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE 
                         46.68                          53.26 
      DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE 
                          9.70                          31.56 
[1] "0.1 - 46.7 (9.7)"  "2.0 - 53.3 (31.6)"
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK 19(13Q14.2) WILD-TYPE"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 19(13Q14.2) WILD-TYPE" "DEL PEAK 19(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 19(13Q14.2) WILD-TYPE"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 19(13Q14.2) WILD-TYPE" "DEL PEAK 19(13Q14.2) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"DEL PEAK 19(13Q14.2) WILD-TYPE"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK 19(13Q14.2) WILD-TYPE"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 19(13Q14.2) WILD-TYPE" "DEL PEAK 19(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 19(13Q14.2) WILD-TYPE"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 19(13Q14.2) WILD-TYPE" "DEL PEAK 19(13Q14.2) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"DEL PEAK 19(13Q14.2) WILD-TYPE"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK 19(13Q14.2) WILD-TYPE"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 19(13Q14.2) WILD-TYPE" "DEL PEAK 19(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 19(13Q14.2) WILD-TYPE"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 19(13Q14.2) WILD-TYPE" "DEL PEAK 19(13Q14.2) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 19(13Q14.2) CNV"       "DEL PEAK 19(13Q14.2) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"DEL PEAK 19(13Q14.2) WILD-TYPE"       "DEL PEAK 19(13Q14.2) CNV" 
[1] "hr=" "3.2"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(13Q14.2) CNV          8    7
  DEL PEAK 19(13Q14.2) WILD-TYPE    2    5
        clus
vv       DEL PEAK 19(13Q14.2) CNV DEL PEAK 19(13Q14.2) WILD-TYPE
  FEMALE                        8                              2
  MALE                          7                              5

Clustering(33) Variable = Del Peak 20(13q34)
D33V1, survival
                              sevent
clus2                          0 1
  DEL PEAK 20(13Q34) CNV       9 3
  DEL PEAK 20(13Q34) WILD-TYPE 7 3
      DEL PEAK 20(13Q34) CNV DEL PEAK 20(13Q34) WILD-TYPE 
                          12                           10 
      DEL PEAK 20(13Q34) CNV DEL PEAK 20(13Q34) WILD-TYPE 
                           3                            3 
$`DEL PEAK 20(13Q34) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A2J0 
        2.04        27.19        24.49        18.51        46.68         9.70 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-KF-A41W 
        0.07         0.07        26.89         4.54         4.14         5.95 

$`DEL PEAK 20(13Q34) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 
       12.85        42.44        31.56         8.55        53.26        43.04 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-IS-A3KA TCGA-IW-A3M5 
        0.46         0.10        13.58         5.88 

      DEL PEAK 20(13Q34) CNV DEL PEAK 20(13Q34) WILD-TYPE 
                        0.07                         0.10 
      DEL PEAK 20(13Q34) CNV DEL PEAK 20(13Q34) WILD-TYPE 
                       46.68                        53.26 
      DEL PEAK 20(13Q34) CNV DEL PEAK 20(13Q34) WILD-TYPE 
                       7.825                       13.215 
[1] "0.1 - 46.7 (7.8)"  "0.1 - 53.3 (13.2)"
                  TCGA-DX-A1KW                   TCGA-DX-A1KX 
      "DEL PEAK 20(13Q34) CNV"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A1KY                   TCGA-DX-A1KZ 
"DEL PEAK 20(13Q34) WILD-TYPE"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A1L0                   TCGA-DX-A1L1 
      "DEL PEAK 20(13Q34) CNV"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A1L2                   TCGA-DX-A1L3 
"DEL PEAK 20(13Q34) WILD-TYPE" "DEL PEAK 20(13Q34) WILD-TYPE" 
                  TCGA-DX-A2IZ                   TCGA-DX-A2J0 
"DEL PEAK 20(13Q34) WILD-TYPE"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A2J1                   TCGA-DX-A2J4 
"DEL PEAK 20(13Q34) WILD-TYPE" "DEL PEAK 20(13Q34) WILD-TYPE" 
                  TCGA-FX-A2QS                   TCGA-FX-A3NJ 
"DEL PEAK 20(13Q34) WILD-TYPE" "DEL PEAK 20(13Q34) WILD-TYPE" 
                  TCGA-FX-A3RE                   TCGA-FX-A48G 
      "DEL PEAK 20(13Q34) CNV"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-HB-A2OT                   TCGA-HB-A3YV 
      "DEL PEAK 20(13Q34) CNV"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-HB-A43Z                   TCGA-IS-A3KA 
      "DEL PEAK 20(13Q34) CNV" "DEL PEAK 20(13Q34) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-KF-A41W 
"DEL PEAK 20(13Q34) WILD-TYPE"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A1KW                   TCGA-DX-A1KX 
      "DEL PEAK 20(13Q34) CNV"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A1KY                   TCGA-DX-A1KZ 
"DEL PEAK 20(13Q34) WILD-TYPE"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A1L0                   TCGA-DX-A1L1 
      "DEL PEAK 20(13Q34) CNV"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A1L2                   TCGA-DX-A1L3 
"DEL PEAK 20(13Q34) WILD-TYPE" "DEL PEAK 20(13Q34) WILD-TYPE" 
                  TCGA-DX-A2IZ                   TCGA-DX-A2J0 
"DEL PEAK 20(13Q34) WILD-TYPE"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A2J1                   TCGA-DX-A2J4 
"DEL PEAK 20(13Q34) WILD-TYPE" "DEL PEAK 20(13Q34) WILD-TYPE" 
                  TCGA-FX-A2QS                   TCGA-FX-A3NJ 
"DEL PEAK 20(13Q34) WILD-TYPE" "DEL PEAK 20(13Q34) WILD-TYPE" 
                  TCGA-FX-A3RE                   TCGA-FX-A48G 
      "DEL PEAK 20(13Q34) CNV"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-HB-A2OT                   TCGA-HB-A3YV 
      "DEL PEAK 20(13Q34) CNV"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-HB-A43Z                   TCGA-IS-A3KA 
      "DEL PEAK 20(13Q34) CNV" "DEL PEAK 20(13Q34) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-KF-A41W 
"DEL PEAK 20(13Q34) WILD-TYPE"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A1KW                   TCGA-DX-A1KX 
      "DEL PEAK 20(13Q34) CNV"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A1KY                   TCGA-DX-A1KZ 
"DEL PEAK 20(13Q34) WILD-TYPE"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A1L0                   TCGA-DX-A1L1 
      "DEL PEAK 20(13Q34) CNV"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A1L2                   TCGA-DX-A1L3 
"DEL PEAK 20(13Q34) WILD-TYPE" "DEL PEAK 20(13Q34) WILD-TYPE" 
                  TCGA-DX-A2IZ                   TCGA-DX-A2J0 
"DEL PEAK 20(13Q34) WILD-TYPE"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-DX-A2J1                   TCGA-DX-A2J4 
"DEL PEAK 20(13Q34) WILD-TYPE" "DEL PEAK 20(13Q34) WILD-TYPE" 
                  TCGA-FX-A2QS                   TCGA-FX-A3NJ 
"DEL PEAK 20(13Q34) WILD-TYPE" "DEL PEAK 20(13Q34) WILD-TYPE" 
                  TCGA-FX-A3RE                   TCGA-FX-A48G 
      "DEL PEAK 20(13Q34) CNV"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-HB-A2OT                   TCGA-HB-A3YV 
      "DEL PEAK 20(13Q34) CNV"       "DEL PEAK 20(13Q34) CNV" 
                  TCGA-HB-A43Z                   TCGA-IS-A3KA 
      "DEL PEAK 20(13Q34) CNV" "DEL PEAK 20(13Q34) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-KF-A41W 
"DEL PEAK 20(13Q34) WILD-TYPE"       "DEL PEAK 20(13Q34) CNV" 
[1] "hr=" "1"  
D33V2, continuous
D33V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 20(13Q34) CNV          6    6
  DEL PEAK 20(13Q34) WILD-TYPE    4    6
        clus
vv       DEL PEAK 20(13Q34) CNV DEL PEAK 20(13Q34) WILD-TYPE
  FEMALE                      6                            4
  MALE                        6                            6

Clustering(34) Variable = Del Peak 21(14q24.1)
D34V1, survival
                                sevent
clus2                            0 1
  DEL PEAK 21(14Q24.1) CNV       9 3
  DEL PEAK 21(14Q24.1) WILD-TYPE 7 3
      DEL PEAK 21(14Q24.1) CNV DEL PEAK 21(14Q24.1) WILD-TYPE 
                            12                             10 
      DEL PEAK 21(14Q24.1) CNV DEL PEAK 21(14Q24.1) WILD-TYPE 
                             3                              3 
$`DEL PEAK 21(14Q24.1) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 
        2.04        27.19        12.85        24.49        18.51        42.44 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z TCGA-IW-A3M5 
        0.46         0.10         0.07         0.07         4.14         5.88 

$`DEL PEAK 21(14Q24.1) WILD-TYPE`
TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       46.68        31.56         8.55         9.70        53.26        43.04 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IS-A3KA TCGA-KF-A41W 
       26.89         4.54        13.58         5.95 

      DEL PEAK 21(14Q24.1) CNV DEL PEAK 21(14Q24.1) WILD-TYPE 
                          0.07                           4.54 
      DEL PEAK 21(14Q24.1) CNV DEL PEAK 21(14Q24.1) WILD-TYPE 
                         42.44                          53.26 
      DEL PEAK 21(14Q24.1) CNV DEL PEAK 21(14Q24.1) WILD-TYPE 
                         5.010                         20.235 
[1] "0.1 - 42.4 (5.0)"  "4.5 - 53.3 (20.2)"
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 21(14Q24.1) CNV"       "DEL PEAK 21(14Q24.1) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
      "DEL PEAK 21(14Q24.1) CNV"       "DEL PEAK 21(14Q24.1) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 21(14Q24.1) CNV" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK 21(14Q24.1) CNV" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 21(14Q24.1) WILD-TYPE" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 21(14Q24.1) WILD-TYPE" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 21(14Q24.1) CNV"       "DEL PEAK 21(14Q24.1) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK 21(14Q24.1) CNV"       "DEL PEAK 21(14Q24.1) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK 21(14Q24.1) WILD-TYPE" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 21(14Q24.1) CNV" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 21(14Q24.1) CNV" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 21(14Q24.1) CNV"       "DEL PEAK 21(14Q24.1) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
      "DEL PEAK 21(14Q24.1) CNV"       "DEL PEAK 21(14Q24.1) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 21(14Q24.1) CNV" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK 21(14Q24.1) CNV" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 21(14Q24.1) WILD-TYPE" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 21(14Q24.1) WILD-TYPE" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 21(14Q24.1) CNV"       "DEL PEAK 21(14Q24.1) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK 21(14Q24.1) CNV"       "DEL PEAK 21(14Q24.1) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK 21(14Q24.1) WILD-TYPE" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 21(14Q24.1) CNV" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 21(14Q24.1) CNV" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 21(14Q24.1) CNV"       "DEL PEAK 21(14Q24.1) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
      "DEL PEAK 21(14Q24.1) CNV"       "DEL PEAK 21(14Q24.1) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 21(14Q24.1) CNV" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK 21(14Q24.1) CNV" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 21(14Q24.1) WILD-TYPE" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 21(14Q24.1) WILD-TYPE" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 21(14Q24.1) CNV"       "DEL PEAK 21(14Q24.1) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
      "DEL PEAK 21(14Q24.1) CNV"       "DEL PEAK 21(14Q24.1) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK 21(14Q24.1) WILD-TYPE" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 21(14Q24.1) CNV" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 21(14Q24.1) CNV" "DEL PEAK 21(14Q24.1) WILD-TYPE" 
[1] "hr=" "1.4"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(14Q24.1) CNV          6    6
  DEL PEAK 21(14Q24.1) WILD-TYPE    4    6
        clus
vv       DEL PEAK 21(14Q24.1) CNV DEL PEAK 21(14Q24.1) WILD-TYPE
  FEMALE                        6                              4
  MALE                          6                              6

Clustering(35) Variable = Del Peak 22(17p13.1)
D35V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 22(17P13.1) CNV        4  1
  DEL PEAK 22(17P13.1) WILD-TYPE 12  5
      DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE 
                             5                             17 
      DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE 
                             1                              5 
$`DEL PEAK 22(17P13.1) CNV`
TCGA-DX-A1KZ TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-IW-A3M5 TCGA-KF-A41W 
       24.49         0.10        26.89         5.88         5.95 

$`DEL PEAK 22(17P13.1) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
        2.04        27.19        12.85        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A2QS 
       31.56         8.55         9.70        53.26        43.04         0.46 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IS-A3KA 
        0.07         0.07         4.54         4.14        13.58 

      DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE 
                          0.10                           0.07 
      DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE 
                         26.89                          53.26 
      DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE 
                          5.95                          12.85 
[1] "0.1 - 26.9 (6.0)"  "0.1 - 53.3 (12.8)"
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 22(17P13.1) WILD-TYPE"       "DEL PEAK 22(17P13.1) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 22(17P13.1) WILD-TYPE"       "DEL PEAK 22(17P13.1) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 22(17P13.1) CNV" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 22(17P13.1) CNV"       "DEL PEAK 22(17P13.1) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 22(17P13.1) WILD-TYPE"       "DEL PEAK 22(17P13.1) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 22(17P13.1) WILD-TYPE"       "DEL PEAK 22(17P13.1) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 22(17P13.1) CNV" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 22(17P13.1) CNV"       "DEL PEAK 22(17P13.1) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 22(17P13.1) WILD-TYPE"       "DEL PEAK 22(17P13.1) CNV" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 22(17P13.1) WILD-TYPE"       "DEL PEAK 22(17P13.1) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 22(17P13.1) CNV" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 22(17P13.1) WILD-TYPE" "DEL PEAK 22(17P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 22(17P13.1) CNV"       "DEL PEAK 22(17P13.1) CNV" 
[1] "hr=" "1.4"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(17P13.1) CNV          3    2
  DEL PEAK 22(17P13.1) WILD-TYPE    7   10
        clus
vv       DEL PEAK 22(17P13.1) CNV DEL PEAK 22(17P13.1) WILD-TYPE
  FEMALE                        3                              7
  MALE                          2                             10

Clustering(36) Variable = Del Peak 23(17q25.3)
D36V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(17Q25.3) CNV        4  2
  DEL PEAK 23(17Q25.3) WILD-TYPE 12  4
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                             6                             16 
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                             2                              4 
$`DEL PEAK 23(17Q25.3) CNV`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-FX-A3NJ TCGA-IS-A3KA TCGA-KF-A41W 
        2.04        27.19        18.51         0.10        13.58         5.95 

$`DEL PEAK 23(17Q25.3) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ 
       12.85        24.49        46.68        42.44        31.56         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G 
        9.70        53.26        43.04         0.46         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IW-A3M5 
       26.89         4.54         4.14         5.88 

      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                          0.10                           0.07 
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                         27.19                          53.26 
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                         9.765                         11.275 
[1] "0.1 - 27.2 (9.8)"  "0.1 - 53.3 (11.3)"
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 23(17Q25.3) CNV"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 23(17Q25.3) CNV"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
      "DEL PEAK 23(17Q25.3) CNV"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 23(17Q25.3) CNV" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
"DEL PEAK 23(17Q25.3) WILD-TYPE"       "DEL PEAK 23(17Q25.3) CNV" 
[1] "hr=" "1.4"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(17Q25.3) CNV          3    3
  DEL PEAK 23(17Q25.3) WILD-TYPE    7    9
        clus
vv       DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE
  FEMALE                        3                              7
  MALE                          3                              9

Clustering(37) Variable = Del Peak 24(19p13.3)
D37V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(19P13.3) CNV        3  2
  DEL PEAK 24(19P13.3) WILD-TYPE 13  4
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                             5                             17 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                             2                              4 
$`DEL PEAK 24(19P13.3) CNV`
TCGA-FX-A48G TCGA-HB-A43Z TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-KF-A41W 
        0.07         4.14        13.58         5.88         5.95 

$`DEL PEAK 24(19P13.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
        2.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       42.44        31.56         8.55         9.70        53.26        43.04 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT TCGA-HB-A3YV 
        0.46         0.10         0.07        26.89         4.54 

      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                          0.07                           0.07 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                         13.58                          53.26 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                          5.88                          18.51 
[1] "0.1 - 13.6 (5.9)"  "0.1 - 53.3 (18.5)"
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 24(19P13.3) CNV"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 24(19P13.3) CNV"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 24(19P13.3) CNV"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 24(19P13.3) CNV"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 24(19P13.3) WILD-TYPE"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
      "DEL PEAK 24(19P13.3) CNV"       "DEL PEAK 24(19P13.3) CNV" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 24(19P13.3) CNV"       "DEL PEAK 24(19P13.3) CNV" 
[1] "hr=" "4.6"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) CNV          5    0
  DEL PEAK 24(19P13.3) WILD-TYPE    5   12
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  FEMALE                        5                              5
  MALE                          0                             12

Clustering(38) Variable = Del Peak 25(19q13.33)
D38V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 25(19Q13.33) CNV        6  4
  DEL PEAK 25(19Q13.33) WILD-TYPE 10  2
      DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE 
                             10                              12 
      DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE 
                              4                               2 
$`DEL PEAK 25(19Q13.33) CNV`
TCGA-DX-A1KW TCGA-DX-A1L0 TCGA-DX-A2J0 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G 
        2.04        18.51         9.70         0.46         0.07         0.07 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IS-A3KA TCGA-KF-A41W 
        4.54         4.14        13.58         5.95 

$`DEL PEAK 25(19Q13.33) WILD-TYPE`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       27.19        12.85        24.49        46.68        42.44        31.56 
TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-IW-A3M5 
        8.55        53.26        43.04         0.10        26.89         5.88 

      DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE 
                           0.07                            0.10 
      DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE 
                          18.51                           53.26 
      DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE 
                           4.34                           27.04 
[1] "0.1 - 18.5 (4.3)"  "0.1 - 53.3 (27.0)"
                     TCGA-DX-A1KW                      TCGA-DX-A1KX 
      "DEL PEAK 25(19Q13.33) CNV" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1KY                      TCGA-DX-A1KZ 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1L0                      TCGA-DX-A1L1 
      "DEL PEAK 25(19Q13.33) CNV" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1L2                      TCGA-DX-A1L3 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A2IZ                      TCGA-DX-A2J0 
"DEL PEAK 25(19Q13.33) WILD-TYPE"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-DX-A2J1                      TCGA-DX-A2J4 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FX-A2QS                      TCGA-FX-A3NJ 
      "DEL PEAK 25(19Q13.33) CNV" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FX-A3RE                      TCGA-FX-A48G 
      "DEL PEAK 25(19Q13.33) CNV"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-HB-A2OT                      TCGA-HB-A3YV 
"DEL PEAK 25(19Q13.33) WILD-TYPE"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-HB-A43Z                      TCGA-IS-A3KA 
      "DEL PEAK 25(19Q13.33) CNV"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-IW-A3M5                      TCGA-KF-A41W 
"DEL PEAK 25(19Q13.33) WILD-TYPE"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-DX-A1KW                      TCGA-DX-A1KX 
      "DEL PEAK 25(19Q13.33) CNV" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1KY                      TCGA-DX-A1KZ 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1L0                      TCGA-DX-A1L1 
      "DEL PEAK 25(19Q13.33) CNV" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1L2                      TCGA-DX-A1L3 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A2IZ                      TCGA-DX-A2J0 
"DEL PEAK 25(19Q13.33) WILD-TYPE"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-DX-A2J1                      TCGA-DX-A2J4 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FX-A2QS                      TCGA-FX-A3NJ 
      "DEL PEAK 25(19Q13.33) CNV" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FX-A3RE                      TCGA-FX-A48G 
      "DEL PEAK 25(19Q13.33) CNV"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-HB-A2OT                      TCGA-HB-A3YV 
"DEL PEAK 25(19Q13.33) WILD-TYPE"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-HB-A43Z                      TCGA-IS-A3KA 
      "DEL PEAK 25(19Q13.33) CNV"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-IW-A3M5                      TCGA-KF-A41W 
"DEL PEAK 25(19Q13.33) WILD-TYPE"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-DX-A1KW                      TCGA-DX-A1KX 
      "DEL PEAK 25(19Q13.33) CNV" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1KY                      TCGA-DX-A1KZ 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1L0                      TCGA-DX-A1L1 
      "DEL PEAK 25(19Q13.33) CNV" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A1L2                      TCGA-DX-A1L3 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DX-A2IZ                      TCGA-DX-A2J0 
"DEL PEAK 25(19Q13.33) WILD-TYPE"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-DX-A2J1                      TCGA-DX-A2J4 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FX-A2QS                      TCGA-FX-A3NJ 
      "DEL PEAK 25(19Q13.33) CNV" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FX-A3RE                      TCGA-FX-A48G 
      "DEL PEAK 25(19Q13.33) CNV"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-HB-A2OT                      TCGA-HB-A3YV 
"DEL PEAK 25(19Q13.33) WILD-TYPE"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-HB-A43Z                      TCGA-IS-A3KA 
      "DEL PEAK 25(19Q13.33) CNV"       "DEL PEAK 25(19Q13.33) CNV" 
                     TCGA-IW-A3M5                      TCGA-KF-A41W 
"DEL PEAK 25(19Q13.33) WILD-TYPE"       "DEL PEAK 25(19Q13.33) CNV" 
[1] "hr=" "7.6"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(19Q13.33) CNV          6    4
  DEL PEAK 25(19Q13.33) WILD-TYPE    4    8
        clus
vv       DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE
  FEMALE                         6                               4
  MALE                           4                               8

Clustering(39) Variable = Del Peak 26(21q22.3)
D39V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(21Q22.3) CNV        5  3
  DEL PEAK 26(21Q22.3) WILD-TYPE 11  3
      DEL PEAK 26(21Q22.3) CNV DEL PEAK 26(21Q22.3) WILD-TYPE 
                             8                             14 
      DEL PEAK 26(21Q22.3) CNV DEL PEAK 26(21Q22.3) WILD-TYPE 
                             3                              3 
$`DEL PEAK 26(21Q22.3) CNV`
TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A2J0 TCGA-FX-A2QS TCGA-HB-A2OT 
       27.19        18.51        42.44         9.70         0.46        26.89 
TCGA-IW-A3M5 TCGA-KF-A41W 
        5.88         5.95 

$`DEL PEAK 26(21Q22.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A2IZ 
        2.04        12.85        24.49        46.68        31.56         8.55 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV 
       53.26        43.04         0.10         0.07         0.07         4.54 
TCGA-HB-A43Z TCGA-IS-A3KA 
        4.14        13.58 

      DEL PEAK 26(21Q22.3) CNV DEL PEAK 26(21Q22.3) WILD-TYPE 
                          0.46                           0.07 
      DEL PEAK 26(21Q22.3) CNV DEL PEAK 26(21Q22.3) WILD-TYPE 
                         42.44                          53.26 
      DEL PEAK 26(21Q22.3) CNV DEL PEAK 26(21Q22.3) WILD-TYPE 
                        14.105                         10.700 
[1] "0.5 - 42.4 (14.1)" "0.1 - 53.3 (10.7)"
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK 26(21Q22.3) WILD-TYPE"       "DEL PEAK 26(21Q22.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 26(21Q22.3) WILD-TYPE" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 26(21Q22.3) CNV" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK 26(21Q22.3) CNV" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 26(21Q22.3) WILD-TYPE"       "DEL PEAK 26(21Q22.3) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 26(21Q22.3) WILD-TYPE" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 26(21Q22.3) CNV" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 26(21Q22.3) WILD-TYPE" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 26(21Q22.3) CNV" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 26(21Q22.3) WILD-TYPE" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 26(21Q22.3) CNV"       "DEL PEAK 26(21Q22.3) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK 26(21Q22.3) WILD-TYPE"       "DEL PEAK 26(21Q22.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 26(21Q22.3) WILD-TYPE" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 26(21Q22.3) CNV" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK 26(21Q22.3) CNV" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 26(21Q22.3) WILD-TYPE"       "DEL PEAK 26(21Q22.3) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 26(21Q22.3) WILD-TYPE" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 26(21Q22.3) CNV" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 26(21Q22.3) WILD-TYPE" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 26(21Q22.3) CNV" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 26(21Q22.3) WILD-TYPE" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 26(21Q22.3) CNV"       "DEL PEAK 26(21Q22.3) CNV" 
                    TCGA-DX-A1KW                     TCGA-DX-A1KX 
"DEL PEAK 26(21Q22.3) WILD-TYPE"       "DEL PEAK 26(21Q22.3) CNV" 
                    TCGA-DX-A1KY                     TCGA-DX-A1KZ 
"DEL PEAK 26(21Q22.3) WILD-TYPE" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1L0                     TCGA-DX-A1L1 
      "DEL PEAK 26(21Q22.3) CNV" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1L2                     TCGA-DX-A1L3 
      "DEL PEAK 26(21Q22.3) CNV" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2IZ                     TCGA-DX-A2J0 
"DEL PEAK 26(21Q22.3) WILD-TYPE"       "DEL PEAK 26(21Q22.3) CNV" 
                    TCGA-DX-A2J1                     TCGA-DX-A2J4 
"DEL PEAK 26(21Q22.3) WILD-TYPE" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-FX-A2QS                     TCGA-FX-A3NJ 
      "DEL PEAK 26(21Q22.3) CNV" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-FX-A3RE                     TCGA-FX-A48G 
"DEL PEAK 26(21Q22.3) WILD-TYPE" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-HB-A2OT                     TCGA-HB-A3YV 
      "DEL PEAK 26(21Q22.3) CNV" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-HB-A43Z                     TCGA-IS-A3KA 
"DEL PEAK 26(21Q22.3) WILD-TYPE" "DEL PEAK 26(21Q22.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-KF-A41W 
      "DEL PEAK 26(21Q22.3) CNV"       "DEL PEAK 26(21Q22.3) CNV" 
[1] "hr=" "1.4"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(21Q22.3) CNV          5    3
  DEL PEAK 26(21Q22.3) WILD-TYPE    5    9
        clus
vv       DEL PEAK 26(21Q22.3) CNV DEL PEAK 26(21Q22.3) WILD-TYPE
  FEMALE                        5                              5
  MALE                          3                              9

Clustering(40) Variable = Del Peak 27(Xq21.1)
D40V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 27(XQ21.1) CNV        6  2
  DEL PEAK 27(XQ21.1) WILD-TYPE 10  4
      DEL PEAK 27(XQ21.1) CNV DEL PEAK 27(XQ21.1) WILD-TYPE 
                            8                            14 
      DEL PEAK 27(XQ21.1) CNV DEL PEAK 27(XQ21.1) WILD-TYPE 
                            2                             4 
$`DEL PEAK 27(XQ21.1) CNV`
TCGA-DX-A1KX TCGA-DX-A1L2 TCGA-DX-A2J0 TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G 
       27.19        42.44         9.70         0.46         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A3YV 
       26.89         4.54 

$`DEL PEAK 27(XQ21.1) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 
        2.04        12.85        24.49        18.51        46.68        31.56 
TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-FX-A3NJ TCGA-HB-A43Z TCGA-IS-A3KA 
        8.55        53.26        43.04         0.10         4.14        13.58 
TCGA-IW-A3M5 TCGA-KF-A41W 
        5.88         5.95 

      DEL PEAK 27(XQ21.1) CNV DEL PEAK 27(XQ21.1) WILD-TYPE 
                         0.07                          0.10 
      DEL PEAK 27(XQ21.1) CNV DEL PEAK 27(XQ21.1) WILD-TYPE 
                        42.44                         53.26 
      DEL PEAK 27(XQ21.1) CNV DEL PEAK 27(XQ21.1) WILD-TYPE 
                        7.120                        13.215 
[1] "0.1 - 42.4 (7.1)"  "0.1 - 53.3 (13.2)"
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK 27(XQ21.1) WILD-TYPE"       "DEL PEAK 27(XQ21.1) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK 27(XQ21.1) CNV" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 27(XQ21.1) WILD-TYPE"       "DEL PEAK 27(XQ21.1) CNV" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK 27(XQ21.1) CNV" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK 27(XQ21.1) CNV"       "DEL PEAK 27(XQ21.1) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK 27(XQ21.1) CNV"       "DEL PEAK 27(XQ21.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK 27(XQ21.1) WILD-TYPE"       "DEL PEAK 27(XQ21.1) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK 27(XQ21.1) CNV" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 27(XQ21.1) WILD-TYPE"       "DEL PEAK 27(XQ21.1) CNV" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK 27(XQ21.1) CNV" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK 27(XQ21.1) CNV"       "DEL PEAK 27(XQ21.1) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK 27(XQ21.1) CNV"       "DEL PEAK 27(XQ21.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KW                    TCGA-DX-A1KX 
"DEL PEAK 27(XQ21.1) WILD-TYPE"       "DEL PEAK 27(XQ21.1) CNV" 
                   TCGA-DX-A1KY                    TCGA-DX-A1KZ 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L0                    TCGA-DX-A1L1 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L2                    TCGA-DX-A1L3 
      "DEL PEAK 27(XQ21.1) CNV" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2IZ                    TCGA-DX-A2J0 
"DEL PEAK 27(XQ21.1) WILD-TYPE"       "DEL PEAK 27(XQ21.1) CNV" 
                   TCGA-DX-A2J1                    TCGA-DX-A2J4 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A2QS                    TCGA-FX-A3NJ 
      "DEL PEAK 27(XQ21.1) CNV" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A3RE                    TCGA-FX-A48G 
      "DEL PEAK 27(XQ21.1) CNV"       "DEL PEAK 27(XQ21.1) CNV" 
                   TCGA-HB-A2OT                    TCGA-HB-A3YV 
      "DEL PEAK 27(XQ21.1) CNV"       "DEL PEAK 27(XQ21.1) CNV" 
                   TCGA-HB-A43Z                    TCGA-IS-A3KA 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-KF-A41W 
"DEL PEAK 27(XQ21.1) WILD-TYPE" "DEL PEAK 27(XQ21.1) WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 27(XQ21.1) CNV          5    3
  DEL PEAK 27(XQ21.1) WILD-TYPE    5    9
        clus
vv       DEL PEAK 27(XQ21.1) CNV DEL PEAK 27(XQ21.1) WILD-TYPE
  FEMALE                       5                             5
  MALE                         3                             9

Clustering(41) Variable = Del Peak 28(Xq28)
D41V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 28(XQ28) CNV        5  5
  DEL PEAK 28(XQ28) WILD-TYPE 11  1
      DEL PEAK 28(XQ28) CNV DEL PEAK 28(XQ28) WILD-TYPE 
                         10                          12 
      DEL PEAK 28(XQ28) CNV DEL PEAK 28(XQ28) WILD-TYPE 
                          5                           1 
$`DEL PEAK 28(XQ28) CNV`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A2J0 
       12.85        24.49        18.51        46.68        42.44         9.70 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IS-A3KA 
        0.07        26.89         4.54        13.58 

$`DEL PEAK 28(XQ28) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L3 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 
        2.04        27.19        31.56         8.55        53.26        43.04 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A43Z TCGA-IW-A3M5 TCGA-KF-A41W 
        0.46         0.10         0.07         4.14         5.88         5.95 

      DEL PEAK 28(XQ28) CNV DEL PEAK 28(XQ28) WILD-TYPE 
                       0.07                        0.07 
      DEL PEAK 28(XQ28) CNV DEL PEAK 28(XQ28) WILD-TYPE 
                      46.68                       53.26 
      DEL PEAK 28(XQ28) CNV DEL PEAK 28(XQ28) WILD-TYPE 
                     16.045                       5.915 
[1] "0.1 - 46.7 (16.0)" "0.1 - 53.3 (5.9)" 
                 TCGA-DX-A1KW                  TCGA-DX-A1KX 
"DEL PEAK 28(XQ28) WILD-TYPE" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DX-A1KY                  TCGA-DX-A1KZ 
      "DEL PEAK 28(XQ28) CNV"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-DX-A1L0                  TCGA-DX-A1L1 
      "DEL PEAK 28(XQ28) CNV"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-DX-A1L2                  TCGA-DX-A1L3 
      "DEL PEAK 28(XQ28) CNV" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DX-A2IZ                  TCGA-DX-A2J0 
"DEL PEAK 28(XQ28) WILD-TYPE"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-DX-A2J1                  TCGA-DX-A2J4 
"DEL PEAK 28(XQ28) WILD-TYPE" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FX-A2QS                  TCGA-FX-A3NJ 
"DEL PEAK 28(XQ28) WILD-TYPE" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FX-A3RE                  TCGA-FX-A48G 
"DEL PEAK 28(XQ28) WILD-TYPE"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-HB-A2OT                  TCGA-HB-A3YV 
      "DEL PEAK 28(XQ28) CNV"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-HB-A43Z                  TCGA-IS-A3KA 
"DEL PEAK 28(XQ28) WILD-TYPE"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-IW-A3M5                  TCGA-KF-A41W 
"DEL PEAK 28(XQ28) WILD-TYPE" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DX-A1KW                  TCGA-DX-A1KX 
"DEL PEAK 28(XQ28) WILD-TYPE" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DX-A1KY                  TCGA-DX-A1KZ 
      "DEL PEAK 28(XQ28) CNV"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-DX-A1L0                  TCGA-DX-A1L1 
      "DEL PEAK 28(XQ28) CNV"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-DX-A1L2                  TCGA-DX-A1L3 
      "DEL PEAK 28(XQ28) CNV" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DX-A2IZ                  TCGA-DX-A2J0 
"DEL PEAK 28(XQ28) WILD-TYPE"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-DX-A2J1                  TCGA-DX-A2J4 
"DEL PEAK 28(XQ28) WILD-TYPE" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FX-A2QS                  TCGA-FX-A3NJ 
"DEL PEAK 28(XQ28) WILD-TYPE" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FX-A3RE                  TCGA-FX-A48G 
"DEL PEAK 28(XQ28) WILD-TYPE"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-HB-A2OT                  TCGA-HB-A3YV 
      "DEL PEAK 28(XQ28) CNV"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-HB-A43Z                  TCGA-IS-A3KA 
"DEL PEAK 28(XQ28) WILD-TYPE"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-IW-A3M5                  TCGA-KF-A41W 
"DEL PEAK 28(XQ28) WILD-TYPE" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DX-A1KW                  TCGA-DX-A1KX 
"DEL PEAK 28(XQ28) WILD-TYPE" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DX-A1KY                  TCGA-DX-A1KZ 
      "DEL PEAK 28(XQ28) CNV"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-DX-A1L0                  TCGA-DX-A1L1 
      "DEL PEAK 28(XQ28) CNV"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-DX-A1L2                  TCGA-DX-A1L3 
      "DEL PEAK 28(XQ28) CNV" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-DX-A2IZ                  TCGA-DX-A2J0 
"DEL PEAK 28(XQ28) WILD-TYPE"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-DX-A2J1                  TCGA-DX-A2J4 
"DEL PEAK 28(XQ28) WILD-TYPE" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FX-A2QS                  TCGA-FX-A3NJ 
"DEL PEAK 28(XQ28) WILD-TYPE" "DEL PEAK 28(XQ28) WILD-TYPE" 
                 TCGA-FX-A3RE                  TCGA-FX-A48G 
"DEL PEAK 28(XQ28) WILD-TYPE"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-HB-A2OT                  TCGA-HB-A3YV 
      "DEL PEAK 28(XQ28) CNV"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-HB-A43Z                  TCGA-IS-A3KA 
"DEL PEAK 28(XQ28) WILD-TYPE"       "DEL PEAK 28(XQ28) CNV" 
                 TCGA-IW-A3M5                  TCGA-KF-A41W 
"DEL PEAK 28(XQ28) WILD-TYPE" "DEL PEAK 28(XQ28) WILD-TYPE" 
[1] "hr=" "3.5"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 28(XQ28) CNV          3    7
  DEL PEAK 28(XQ28) WILD-TYPE    7    5
        clus
vv       DEL PEAK 28(XQ28) CNV DEL PEAK 28(XQ28) WILD-TYPE
  FEMALE                     3                           7
  MALE                       7                           5
           V1.D              V2              V3 
"Time to Death"           "AGE"        "GENDER" 
> q(save="no")
