
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.85.4149/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.85.4149/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/THCA-TP/3539289/THCA-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/THCA-TP/3353070/THCA-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=424, in cluster file=500, common to both=424
[1]  10 424
[1] "CN_CNMF"
[1] 3
  1   2   3 
 25 333  63 
  1   2   3 
 25 333  63 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
122  61 241 
  1   2   3 
122  61 241 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
53 72 73 
 1  2  3 
53 72 73 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3 
84 30 84 
 1  2  3 
84 30 84 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3   4 
120  51 104 138 
  1   2   3   4 
120  51 104 138 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3   4 
 81 169 104  59 
  1   2   3   4 
 81 169 104  59 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
105 134 134 
  1   2   3 
105 134 134 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 92 149 132 
  1   2   3 
 92 149 132 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
  1   2   3 
103 143 127 
  1   2   3 
103 143 127 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
  1   2   3 
148  95 130 
  1   2   3 
148  95 130 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "RADIATIONTHERAPY"                      
[10] "HISTOLOGICALTYPE"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "RADIATIONEXPOSURE"                     
[13] "DISTANT.METASTASIS"                    
[14] "EXTRATHYROIDAL.EXTENSION"              
[15] "LYMPH.NODE.METASTASIS"                 
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "TUMOR.STAGECODE"                       
[19] "NEOPLASM.DISEASESTAGE"                 
[20] "MULTIFOCALITY"                         
[21] "TUMOR.SIZE"                            
[22] "BATCHNUMBER"                           

Input Data has 22 rows and 424 columns.

[1] "Batch" "22"   
[1] "Last Follow UP"
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 
         479          356          232          182          197          251 
TCGA-BJ-A0ZA TCGA-BJ-A0ZB TCGA-BJ-A0ZC TCGA-BJ-A0ZE TCGA-BJ-A0ZF TCGA-BJ-A0ZG 
         264          122          183          237          210          230 
TCGA-BJ-A0ZH TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 
          22          152           85           13          235          246 
TCGA-BJ-A28R TCGA-BJ-A28T TCGA-BJ-A28V TCGA-BJ-A28X TCGA-BJ-A28Z TCGA-BJ-A290 
         148           84          155          532           37          626 
TCGA-BJ-A3PR TCGA-BJ-A3PT TCGA-BJ-A3PU TCGA-BJ-A45C TCGA-CE-A13K TCGA-CE-A27D 
         244          367          305          174           16            3 
TCGA-CE-A3MD TCGA-CE-A3ME TCGA-CE-A481 TCGA-CE-A482 TCGA-CE-A483 TCGA-CE-A484 
           6            7            3            2            3           12 
TCGA-CE-A485 TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A2OL TCGA-DE-A3KN 
           3          402          231          952          161          286 
TCGA-DE-A4M8 TCGA-DE-A4M9 TCGA-DE-A4MA TCGA-DE-A4MB TCGA-DE-A4MC TCGA-DE-A4MD 
         185          148          506          352          529          365 
TCGA-DJ-A13M TCGA-DJ-A13O TCGA-DJ-A13P TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13T 
         274          215         4199           92          265          758 
TCGA-DJ-A13U TCGA-DJ-A13V TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QD TCGA-DJ-A1QE 
         393          362          454          243          334         3041 
TCGA-DJ-A1QF TCGA-DJ-A1QG TCGA-DJ-A1QH TCGA-DJ-A1QI TCGA-DJ-A1QL TCGA-DJ-A1QM 
         549          212          243          151          212           30 
TCGA-DJ-A1QN TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PP 
         273           31          181          304          242          152 
TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PU TCGA-DJ-A2PV 
         623          318           59          292          312          242 
TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q0 TCGA-DJ-A2Q1 
         234          153          267          256          247          284 
TCGA-DJ-A2Q2 TCGA-DJ-A2Q3 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 
         206          280          287          301          262          291 
TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A2QB TCGA-DJ-A2QC TCGA-DJ-A3UK 
         215          315          378          330          304          251 
TCGA-DJ-A3UM TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UP TCGA-DJ-A3UQ TCGA-DJ-A3UR 
         524          380          480          167          277          721 
TCGA-DJ-A3US TCGA-DJ-A3UT TCGA-DJ-A3UU TCGA-DJ-A3UV TCGA-DJ-A3UW TCGA-DJ-A3UX 
         630          469          538          590         1308          345 
TCGA-DJ-A3UY TCGA-DJ-A3UZ TCGA-DJ-A3V0 TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V4 
         405          388          761          225          540          443 
TCGA-DJ-A3V5 TCGA-DJ-A3V6 TCGA-DJ-A3V7 TCGA-DJ-A3V8 TCGA-DJ-A3V9 TCGA-DJ-A3VA 
         239          454          299          259          217          363 
TCGA-DJ-A3VB TCGA-DJ-A3VD TCGA-DJ-A3VE TCGA-DJ-A3VF TCGA-DJ-A3VG TCGA-DJ-A3VJ 
         341          350          134          235          253          528 
TCGA-DJ-A3VM TCGA-DJ-A4UL TCGA-DJ-A4UQ TCGA-DJ-A4UR TCGA-DJ-A4UT TCGA-DJ-A4UW 
         481          363          328          334          371          287 
TCGA-DJ-A4V0 TCGA-DJ-A4V2 TCGA-DJ-A4V4 TCGA-DJ-A4V5 TCGA-DO-A1JZ TCGA-DO-A1K0 
         284           94          102          491         1225           93 
TCGA-DO-A2HM TCGA-E3-A3DY TCGA-E3-A3DZ TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E2 
          70          945          367         1544         1222         1421 
TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A2JQ TCGA-E8-A3X7 
         635          427           34           11           NA           45 
TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A417 TCGA-E8-A418 
          10            7            5           22            8           45 
TCGA-E8-A419 TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A434 TCGA-E8-A436 TCGA-E8-A437 
          NA           16            5            7           35          234 
TCGA-E8-A438 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CO 
         210           12           12           NA         3955           NA 
TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3CX 
        3656           NA           NA         4422         1154         2214 
TCGA-EL-A3CZ TCGA-EL-A3D1 TCGA-EL-A3GO TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR 
        1605         2259         1196           43          918         3128 
TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GV TCGA-EL-A3GW TCGA-EL-A3GX TCGA-EL-A3GY 
        1616         3773         1211         1133         2700          847 
TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 
          NA           NA         1176         1604         3862         3912 
TCGA-EL-A3MW TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3N3 TCGA-EL-A3T0 
        2842           NA           NA          370         4484         3976 
TCGA-EL-A3T1 TCGA-EL-A3T2 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 
        3941          988         3556         2987         1256         2901 
TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZH TCGA-EL-A3ZK 
          NA         1650         2519         2352         2402          957 
TCGA-EL-A3ZL TCGA-EL-A3ZP TCGA-EL-A3ZQ TCGA-EL-A3ZR TCGA-EL-A3ZS TCGA-EL-A3ZT 
        1530         1323         1385         1465          214         1357 
TCGA-EL-A4JV TCGA-EL-A4JX TCGA-EL-A4K1 TCGA-EL-A4K2 TCGA-EL-A4K4 TCGA-EL-A4K6 
        1393         1398          596          594         1022          874 
TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KD TCGA-EL-A4KG TCGA-EL-A4KH TCGA-EL-A4KI 
           4         1149          911          405          361          264 
TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A1CV TCGA-EM-A1CW TCGA-EM-A1YA 
         580          153          214           NA          245          217 
TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22I TCGA-EM-A22J 
         284         1421         1209          650           81          207 
TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22M TCGA-EM-A22N TCGA-EM-A22O TCGA-EM-A22P 
         202          138          106          209          189          174 
TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CM TCGA-EM-A2CN 
         192          348          249          209          357          344 
TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CS TCGA-EM-A2CT 
         183           90          199          218          284          319 
TCGA-EM-A2CU TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OX TCGA-EM-A2OY TCGA-EM-A2OZ 
         176          353          219           88          347          284 
TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P2 TCGA-EM-A2P3 TCGA-EM-A3AI TCGA-EM-A3AJ 
         191          194          224           10          201          397 
TCGA-EM-A3AK TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AP TCGA-EM-A3AQ TCGA-EM-A3AR 
         282          341          336          161          262          207 
TCGA-EM-A3FJ TCGA-EM-A3FQ TCGA-EM-A3O8 TCGA-EM-A3OB TCGA-EM-A3SU TCGA-ET-A25G 
         506          150           15           71          267         1088 
TCGA-ET-A25I TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25N 
          10          903          589          450          375           75 
TCGA-ET-A25O TCGA-ET-A25P TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A2MZ 
         135           15          621         1643          579          373 
TCGA-ET-A2N0 TCGA-ET-A2N1 TCGA-ET-A2N3 TCGA-ET-A2N4 TCGA-ET-A2N5 TCGA-ET-A39I 
         133          449          198           43         1182            9 
TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39L TCGA-ET-A39M TCGA-ET-A39N TCGA-ET-A39O 
         362         2058           59         2266         2535         1309 
TCGA-ET-A39P TCGA-ET-A39R TCGA-ET-A39S TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BO 
         406         1413           20          237           51          177 
TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV 
         127           74          168          752           39           56 
TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DP TCGA-ET-A3DQ TCGA-ET-A3DR 
          72          137         2095         1536         1366           65 
TCGA-ET-A3DS TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A3DV TCGA-ET-A3DW TCGA-ET-A40P 
           9          145          138         3424          751           98 
TCGA-ET-A40Q TCGA-ET-A40R TCGA-ET-A40S TCGA-ET-A40T TCGA-ET-A4KN TCGA-ET-A4KQ 
         218          146          152           64          122           59 
TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 
        1565         1442          374         1346          751         1333 
TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A239 TCGA-FE-A23A 
        3130         2031         2292         1215           NA         1907 
TCGA-FE-A3PA TCGA-FE-A3PB TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB 
        2872         2589         1868         1913         1401          124 
TCGA-FK-A3SD TCGA-FK-A3SE TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB TCGA-FY-A2QD 
          27          669           28         1463         2772           38 
TCGA-FY-A3BL TCGA-FY-A3I4 TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NN TCGA-FY-A3NP 
          35           34           50           30           NA           18 
TCGA-FY-A3ON TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A3R8 TCGA-FY-A3R9 TCGA-FY-A3RA 
          46           23            1          141           66          278 
TCGA-FY-A3TY TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A3YR TCGA-FY-A40K TCGA-FY-A40L 
          NA           23           29          208          126          199 
TCGA-FY-A40M TCGA-FY-A40N TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A2K9 TCGA-H2-A3RH 
         138           27          206          106          145          148 
TCGA-H2-A3RI TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U2 
          90           67           88         1070          939           80 
TCGA-IM-A3U3 TCGA-IM-A41Z TCGA-IM-A420 TCGA-J8-A3NZ TCGA-J8-A3O0 TCGA-J8-A3O1 
          99          293           90           68          392          415 
TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YE TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A3YH 
          41          968          846          751          678          174 
TCGA-J8-A42S TCGA-J8-A4HW TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41I TCGA-KS-A41J 
          75           79            6         3680          485          477 
TCGA-KS-A41L TCGA-KS-A4I1 TCGA-KS-A4I3 TCGA-KS-A4I5 TCGA-KS-A4I7 TCGA-KS-A4I9 
        2637          182          366          204          376          530 
TCGA-KS-A4IB TCGA-KS-A4IC TCGA-KS-A4ID TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET 
        1963          447          623           18          361           34 
TCGA-L6-A4EU TCGA-MK-A4N6 TCGA-MK-A4N7 TCGA-MK-A4N9 
          22          505          440          265 
Variable 1:'AGE':	nDistinctValues=72,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=325,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=17,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'RADIATIONEXPOSURE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'DISTANT.METASTASIS':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'EXTRATHYROIDAL.EXTENSION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'LYMPH.NODE.METASTASIS':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=31,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TUMOR.STAGECODE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NEOPLASM.DISEASESTAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'MULTIFOCALITY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'TUMOR.SIZE':	nDistinctValues=68,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 22:'BATCH.NUMBER':	nDistinctValues=18,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "HISTOLOGICAL.TYPE"                     
 [4] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [5] "RADIATIONEXPOSURE"                     
 [6] "DISTANT.METASTASIS"                    
 [7] "EXTRATHYROIDAL.EXTENSION"              
 [8] "LYMPH.NODE.METASTASIS"                 
 [9] "COMPLETENESS.OF.RESECTION"             
[10] "NUMBER.OF.LYMPH.NODES"                 
[11] "TUMOR.STAGECODE"                       
[12] "NEOPLASM.DISEASESTAGE"                 
[13] "MULTIFOCALITY"                         
[14] "TUMOR.SIZE"                            
[1] "TUMOR.?STAGE" "11"          
[1] "stage2"
vv
 T1 T1A T1B  T2  T3  T4 T4A  TX 
 37  16  65 146 139   8  10   3 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 424 columns, 1 survival variables, and 14 non-survival variables.
AGE, nv=72, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
RADIATIONEXPOSURE, nv=2, binary=FALSE, numeric=FALSE
DISTANT.METASTASIS, nv=3, binary=FALSE, numeric=FALSE
EXTRATHYROIDAL.EXTENSION, nv=4, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=5, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=31, binary=FALSE, numeric=TRUE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=6, binary=FALSE, numeric=FALSE
MULTIFOCALITY, nv=2, binary=FALSE, numeric=FALSE
TUMOR.SIZE, nv=68, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1  23   2
  subtype2 320   8
  subtype3  63   0
subtype1 subtype2 subtype3 
      25      328       63 
subtype1 subtype2 subtype3 
       2        8        0 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A190 TCGA-BJ-A192 TCGA-BJ-A290 TCGA-DE-A4MB TCGA-DJ-A2PV 
       15.75         0.43         8.09        20.58        11.57         7.96 
TCGA-DJ-A2Q0 TCGA-E8-A432 TCGA-EL-A3GP TCGA-EL-A3T9 TCGA-EL-A4KI TCGA-EM-A1YC 
        8.12         0.53         1.41         5.72         8.68        46.72 
TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22N TCGA-EM-A2CO TCGA-EM-A2OY TCGA-EM-A3AI 
       39.75        21.37         6.87         6.02        11.41         6.61 
TCGA-ET-A2MZ TCGA-ET-A39M TCGA-ET-A39N TCGA-FE-A231 TCGA-FE-A239 TCGA-FY-A3I5 
       12.26        74.50        83.34        12.30        33.63         1.64 
TCGA-FY-A3NM 
        0.99 

$subtype2
TCGA-BJ-A0Z0 TCGA-BJ-A0Z3 TCGA-BJ-A0Z9 TCGA-BJ-A0ZA TCGA-BJ-A0ZB TCGA-BJ-A0ZC 
       11.70         5.98         8.25         8.68         4.01         6.02 
TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A191 TCGA-BJ-A28R TCGA-BJ-A28T 
        7.79         7.56         5.00         7.73         4.87         2.76 
TCGA-BJ-A28V TCGA-BJ-A28X TCGA-BJ-A28Z TCGA-BJ-A3PR TCGA-BJ-A3PU TCGA-BJ-A45C 
        5.10        17.49         1.22         8.02        10.03         5.72 
TCGA-CE-A13K TCGA-CE-A27D TCGA-CE-A3MD TCGA-CE-A3ME TCGA-CE-A481 TCGA-CE-A482 
        0.53         0.10         0.20         0.23         0.10         0.07 
TCGA-CE-A483 TCGA-CE-A485 TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A2OL TCGA-DE-A3KN 
        0.10         0.10         7.59        31.30         5.29         9.40 
TCGA-DE-A4M9 TCGA-DE-A4MA TCGA-DE-A4MC TCGA-DE-A4MD TCGA-DJ-A13O TCGA-DJ-A13P 
        4.87        16.64        17.39        12.00         7.07       138.05 
TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13U TCGA-DJ-A13V TCGA-DJ-A13W TCGA-DJ-A13X 
        3.02         8.71        12.92        11.90        14.93         7.99 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QH TCGA-DJ-A1QI TCGA-DJ-A1QL 
       10.98        99.98        18.05         7.99         4.96         6.97 
TCGA-DJ-A1QM TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PP 
        0.99         1.02         5.95         9.99         7.96         5.00 
TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PT TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX 
       20.48        10.45         9.60        10.26         7.69         5.03 
TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q2 TCGA-DJ-A2Q3 TCGA-DJ-A2Q4 
        8.78         8.42         9.34         6.77         9.21         9.44 
TCGA-DJ-A2Q5 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QC TCGA-DJ-A3UM 
        9.90         8.61         7.07        10.36         9.99        17.23 
TCGA-DJ-A3UQ TCGA-DJ-A3UR TCGA-DJ-A3US TCGA-DJ-A3UT TCGA-DJ-A3UU TCGA-DJ-A3UV 
        9.11        23.70        20.71        15.42        17.69        19.40 
TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY TCGA-DJ-A3UZ TCGA-DJ-A3V0 TCGA-DJ-A3V2 
       43.00        11.34        13.32        12.76        25.02         7.40 
TCGA-DJ-A3V3 TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V6 TCGA-DJ-A3V7 TCGA-DJ-A3V8 
       17.75        14.56         7.86        14.93         9.83         8.52 
TCGA-DJ-A3V9 TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VD TCGA-DJ-A3VE TCGA-DJ-A3VF 
        7.13        11.93        11.21        11.51         4.41         7.73 
TCGA-DJ-A3VG TCGA-DJ-A3VJ TCGA-DJ-A4UL TCGA-DJ-A4UQ TCGA-DJ-A4UT TCGA-DJ-A4UW 
        8.32        17.36        11.93        10.78        12.20         9.44 
TCGA-DJ-A4V0 TCGA-DJ-A4V2 TCGA-DJ-A4V4 TCGA-DJ-A4V5 TCGA-DO-A1JZ TCGA-DO-A1K0 
        9.34         3.09         3.35        16.14        40.27         3.06 
TCGA-DO-A2HM TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 
        2.30        31.07        50.76        40.18        46.72        20.88 
TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 
        1.12         0.36         1.48         0.33         0.23         0.16 
TCGA-E8-A416 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A433 TCGA-E8-A436 TCGA-E8-A437 
        0.72         0.26         1.48         0.16         1.15         7.69 
TCGA-E8-A438 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CO 
        6.90         0.39         0.39        26.73       130.03        97.74 
TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3CX 
      120.20         7.66        45.53       145.38        37.94        72.79 
TCGA-EL-A3CZ TCGA-EL-A3GO TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GS TCGA-EL-A3GU 
       52.77        39.32        30.18       102.84        53.13       124.04 
TCGA-EL-A3GV TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3H4 
       39.81        88.77        27.85        49.32        33.47        38.66 
TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3MY TCGA-EL-A3MZ 
       52.73       126.97       128.61        93.44        17.49        52.47 
TCGA-EL-A3N2 TCGA-EL-A3N3 TCGA-EL-A3T0 TCGA-EL-A3T1 TCGA-EL-A3T3 TCGA-EL-A3T6 
       12.16       147.42       130.72       129.57       116.91        98.20 
TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TA TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZH 
       41.29        95.38        54.25        82.82        77.33        78.97 
TCGA-EL-A3ZK TCGA-EL-A3ZP TCGA-EL-A3ZQ TCGA-EL-A3ZS TCGA-EL-A3ZT TCGA-EL-A4JX 
       31.46        43.50        45.53         7.04        44.61        45.96 
TCGA-EL-A4K1 TCGA-EL-A4K2 TCGA-EL-A4K4 TCGA-EL-A4K7 TCGA-EL-A4KD TCGA-EL-A4KG 
       19.59        19.53        33.60         0.13        29.95        13.32 
TCGA-EL-A4KH TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB 
       11.87         5.03         7.04         8.05         7.13         9.34 
TCGA-EM-A22I TCGA-EM-A22J TCGA-EM-A22O TCGA-EM-A22Q TCGA-EM-A2CK TCGA-EM-A2CL 
        2.66         6.81         6.21         6.31         8.19         6.87 
TCGA-EM-A2CN TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CS TCGA-EM-A2CT TCGA-EM-A2CU 
       11.31         2.96         6.54         9.34        10.49         5.79 
TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OX TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A2P1 
       11.61         7.20         2.89         9.34         6.28         6.38 
TCGA-EM-A2P2 TCGA-EM-A2P3 TCGA-EM-A3AJ TCGA-EM-A3AK TCGA-EM-A3AN TCGA-EM-A3AO 
        7.36         0.33        13.05         9.27        11.21        11.05 
TCGA-EM-A3AQ TCGA-EM-A3AR TCGA-EM-A3FJ TCGA-EM-A3FQ TCGA-EM-A3O8 TCGA-EM-A3OB 
        8.61         6.81        16.64         4.93         0.49         2.33 
TCGA-EM-A3SU TCGA-ET-A25G TCGA-ET-A25I TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25M 
        8.78        35.77         0.33        29.69        19.36        12.33 
TCGA-ET-A25N TCGA-ET-A25P TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A2N0 
        2.47         0.49        20.42        54.02        19.04         4.37 
TCGA-ET-A2N1 TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39J TCGA-ET-A39K 
       14.76         6.51        38.86         0.30        11.90        67.66 
TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39R TCGA-ET-A39S TCGA-ET-A39T TCGA-ET-A3BN 
       43.04        13.35        46.45         0.66         7.79         1.68 
TCGA-ET-A3BO TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV 
        5.82         2.43         5.52        24.72         1.28         1.84 
TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DP TCGA-ET-A3DQ TCGA-ET-A3DR 
        2.37         4.50        68.88        50.50        44.91         2.14 
TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A3DV TCGA-ET-A3DW TCGA-ET-A40Q TCGA-ET-A40R 
        4.77         4.54       112.57        24.69         7.17         4.80 
TCGA-ET-A40S TCGA-ET-A4KN TCGA-ET-A4KQ TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A232 
        5.00         4.01         1.94        51.45        47.41        44.25 
TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A238 TCGA-FE-A23A 
       24.69        43.82       102.90        66.77        39.95        62.70 
TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB TCGA-FK-A3SD 
       94.42        61.41        62.89        46.06         4.08         0.89 
TCGA-FK-A3SE TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB TCGA-FY-A2QD TCGA-FY-A3BL 
       21.99         0.92        48.10        91.13         1.25         1.15 
TCGA-FY-A3I4 TCGA-FY-A3ON TCGA-FY-A3R6 TCGA-FY-A3R8 TCGA-FY-A3R9 TCGA-FY-A3RA 
        1.12         1.51         0.76         4.64         2.17         9.14 
TCGA-FY-A3YR TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A40M TCGA-FY-A40N TCGA-H2-A26U 
        6.84         4.14         6.54         4.54         0.89         3.48 
TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-H2-A3RI TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB 
        4.77         4.87         2.96         2.20         2.89        35.18 
TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A420 TCGA-J8-A3NZ TCGA-J8-A3O1 TCGA-J8-A3O2 
       30.87         2.63         2.96         2.24        13.64         1.35 
TCGA-J8-A3YE TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A42S TCGA-J8-A4HW TCGA-J8-A4HY 
       27.81        24.69        22.29         2.47         2.60         0.20 
TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A41L TCGA-KS-A4I1 TCGA-KS-A4I3 TCGA-KS-A4I5 
      120.99        15.68        86.70         5.98        12.03         6.71 
TCGA-KS-A4I9 TCGA-KS-A4IC TCGA-KS-A4ID TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET 
       17.42        14.70        20.48         0.59        11.87         1.12 
TCGA-L6-A4EU TCGA-MK-A4N6 TCGA-MK-A4N7 TCGA-MK-A4N9 
        0.72        16.60        14.47         8.71 

$subtype3
TCGA-BJ-A0Z2 TCGA-BJ-A0Z5 TCGA-BJ-A0ZH TCGA-BJ-A18Y TCGA-BJ-A3PT TCGA-CE-A484 
        7.63         6.48         0.72         2.79        12.07         0.39 
TCGA-DE-A0XZ TCGA-DE-A4M8 TCGA-DJ-A13M TCGA-DJ-A13T TCGA-DJ-A1QG TCGA-DJ-A1QN 
       13.22         6.08         9.01        24.92         6.97         8.98 
TCGA-DJ-A2PS TCGA-DJ-A2Q7 TCGA-DJ-A2QA TCGA-DJ-A2QB TCGA-DJ-A3UK TCGA-DJ-A3UN 
        1.94         9.57        12.43        10.85         8.25        12.49 
TCGA-DJ-A3UO TCGA-DJ-A3UP TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-E3-A3DZ TCGA-E3-A3E5 
       15.78         5.49        15.81        10.98        12.07        14.04 
TCGA-E8-A434 TCGA-EL-A3D1 TCGA-EL-A3GW TCGA-EL-A3T2 TCGA-EL-A3ZL TCGA-EL-A3ZR 
        0.23        74.27        37.25        32.48        50.30        48.16 
TCGA-EL-A4JV TCGA-EL-A4K6 TCGA-EL-A4K9 TCGA-EM-A1CS TCGA-EM-A22K TCGA-EM-A22L 
       45.80        28.73        37.78        19.07         6.64         4.54 
TCGA-EM-A22M TCGA-EM-A22P TCGA-EM-A2CJ TCGA-EM-A2CM TCGA-EM-A3AP TCGA-ET-A25L 
        3.48         5.72        11.44        11.74         5.29        14.79 
TCGA-ET-A25O TCGA-ET-A2N4 TCGA-ET-A39L TCGA-ET-A3BP TCGA-ET-A3DS TCGA-ET-A40P 
        4.44         1.41         1.94         4.18         0.30         3.22 
TCGA-ET-A40T TCGA-FE-A237 TCGA-FE-A3PB TCGA-FY-A3R7 TCGA-FY-A3W9 TCGA-FY-A3WA 
        2.10        75.35        85.12         0.03         0.76         0.95 
TCGA-GE-A2C6 TCGA-IM-A3U3 TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A3YD TCGA-J8-A3YH 
        6.77         3.25         9.63        12.89        31.82         5.72 
TCGA-KS-A41I TCGA-KS-A4I7 TCGA-KS-A4IB 
       15.95        12.36        64.54 

subtype1 subtype2 subtype3 
    0.43     0.07     0.03 
subtype1 subtype2 subtype3 
   83.34   147.42    85.12 
subtype1 subtype2 subtype3 
    8.68     9.34     9.57 
[1] "0.4 - 83.3 (8.7)"  "0.1 - 147.4 (9.3)" "0.0 - 85.1 (9.6)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[259] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[283] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[301] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[325] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[331] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[337] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[343] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[361] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[367] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[391] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[397] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[259] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[283] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[301] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[325] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[331] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[337] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[343] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[361] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[367] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[391] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[397] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [25] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[247] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[259] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[283] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[289] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[301] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[325] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[331] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[337] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[343] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[361] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[367] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[391] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[397] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype2" "subtype2"
D1V2, continuous
D1V3, binary
          cls
clus         0   1
  subtype1  16   9
  subtype2 248  85
  subtype3  50  13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   16    9
  subtype2  248   85
  subtype3   50   13
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       16      248       50
  MALE          9       85       13
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              0                                            16
  subtype2              5                                           241
  subtype3              1                                            39
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                      8
  subtype2                                                                     57
  subtype3                                                                     19
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                  30
  subtype3                                                                   4
D1V4, multiclass
D1V5, binary
          cls
clus         0   1
  subtype1   2  23
  subtype2  11 322
  subtype3   1  62
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   23
  subtype2   11  322
  subtype3    1   62
     clus
vv    subtype1 subtype2 subtype3
  NO         2       11        1
  YES       23      322       62
D1V6, binary
          cls
clus         0   1
  subtype1  22   1
  subtype2 282  15
  subtype3  59   0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22    1
  subtype2  282   15
  subtype3   59    0
     clus
vv    subtype1 subtype2 subtype3
  NO        22      282       59
  YES        1       15        0
          vv
clus        M0  M1  MX
  subtype1   8   0  17
  subtype2 194   6 132
  subtype3  33   2  28
D1V7, multiclass
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1            6                       0   18                   1
  subtype2           94                      13  210                   0
  subtype3           13                       0   47                   0
D1V8, multiclass
          vv
clus        N0  N1 N1A N1B  NX
  subtype1  15   1   2   2   5
  subtype2 144  41  69  48  31
  subtype3  33   7  10  10   3
D1V9, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1  19   2   0   3
  subtype2 264  31   2  16
  subtype3  48   4   0   7
D1V10, multiclass
D1V11, continuous
D1V12, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1       4       10         8        1         2         0
  subtype2     196       28        74        0        28         4
  subtype3      37        6        12        1         6         1
D1V13, multiclass
D1V14, binary
          cls
clus         0   1
  subtype1  10  15
  subtype2 139 187
  subtype3  32  29
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   15
  subtype2  139  187
  subtype3   32   29
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       10      139       32
  UNIFOCAL         15      187       29
D1V15, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2        0   1
  subtype1 118   3
  subtype2  56   2
  subtype3 235   5
subtype1 subtype2 subtype3 
     121       58      240 
subtype1 subtype2 subtype3 
       3        2        5 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       15.75        11.70         7.63         8.68         6.02         7.79 
TCGA-BJ-A0ZF TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 
        6.90         7.56         2.79         0.43         7.73         8.09 
TCGA-BJ-A28V TCGA-BJ-A3PT TCGA-BJ-A45C TCGA-CE-A3ME TCGA-CE-A484 TCGA-DE-A2OL 
        5.10        12.07         5.72         0.23         0.39         5.29 
TCGA-DE-A4M9 TCGA-DJ-A13M TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL 
        4.87         9.01         8.71        14.93         6.97         6.97 
TCGA-DJ-A1QM TCGA-DJ-A2PP TCGA-DJ-A2PS TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB 
        0.99         5.00         1.94         8.12         6.77        10.85 
TCGA-DJ-A3UP TCGA-DJ-A3UT TCGA-DJ-A3UV TCGA-DJ-A3UX TCGA-DJ-A3UY TCGA-DJ-A3UZ 
        5.49        15.42        19.40        11.34        13.32        12.76 
TCGA-DJ-A3VG TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-E3-A3DZ TCGA-E8-A413 TCGA-E8-A415 
        8.32        15.81        10.98        12.07         0.33         0.16 
TCGA-E8-A416 TCGA-E8-A434 TCGA-EL-A3CZ TCGA-EL-A3GO TCGA-EL-A3GW TCGA-EL-A3H1 
        0.72         0.23        52.77        39.32        37.25        49.32 
TCGA-EL-A3H2 TCGA-EL-A3T0 TCGA-EL-A3T2 TCGA-EL-A3ZG TCGA-EL-A3ZH TCGA-EL-A3ZR 
       33.47       130.72        32.48        77.33        78.97        48.16 
TCGA-EL-A4JV TCGA-EL-A4K2 TCGA-EL-A4K6 TCGA-EL-A4KI TCGA-EM-A1CW TCGA-EM-A1YA 
       45.80        19.53        28.73         8.68         8.05         7.13 
TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K 
        9.34        46.72        39.75        21.37         6.81         6.64 
TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL 
        4.54         6.87         6.31        11.44         8.19         6.87 
TCGA-EM-A2CM TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT 
       11.74        11.31         6.02         6.54         7.17        10.49 
TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AP 
       11.61         7.20        11.41         7.36         6.61         5.29 
TCGA-EM-A3AR TCGA-EM-A3O8 TCGA-EM-A3OB TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N1 
        6.81         0.49         2.33         0.33         0.49        14.76 
TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A3DS 
        6.51        38.86         0.30         1.94        83.34         0.30 
TCGA-ET-A3DV TCGA-ET-A40P TCGA-ET-A4KQ TCGA-FE-A239 TCGA-FK-A3SD TCGA-FY-A2QD 
      112.57         3.22         1.94        33.63         0.89         1.25 
TCGA-FY-A3I4 TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R7 TCGA-FY-A3R9 
        1.12         1.64         0.99         0.59         0.03         2.17 
TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A40M TCGA-FY-A40N TCGA-H2-A2K9 TCGA-H2-A3RH 
        0.76         0.95         4.54         0.89         4.77         4.87 
TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A3YD TCGA-J8-A3YE TCGA-KS-A41I TCGA-KS-A41L 
        9.63        12.89        31.82        27.81        15.95        86.70 
TCGA-KS-A4I3 
       12.03 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0ZJ TCGA-BJ-A28T TCGA-BJ-A28X TCGA-BJ-A28Z TCGA-BJ-A3PR 
        5.98         5.00         2.76        17.49         1.22         8.02 
TCGA-CE-A27D TCGA-CE-A481 TCGA-CE-A485 TCGA-DE-A4M8 TCGA-DJ-A13O TCGA-DJ-A13R 
        0.10         0.10         0.10         6.08         7.07         3.02 
TCGA-DJ-A2PT TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q5 TCGA-DJ-A2Q9 TCGA-DJ-A3US 
        9.60         9.34         9.21         9.90        10.36        20.71 
TCGA-DJ-A3UW TCGA-DJ-A3VD TCGA-DJ-A3VF TCGA-DJ-A4UT TCGA-DJ-A4V0 TCGA-DO-A2HM 
       43.00        11.51         7.73        12.20         9.34         2.30 
TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A414 TCGA-E8-A44M TCGA-EL-A3CO TCGA-EL-A3CV 
        1.12         0.36         0.23         0.39        97.74        37.94 
TCGA-EL-A3N3 TCGA-EL-A3T6 TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3ZS TCGA-EL-A4JX 
      147.42        98.20         5.72        54.25         7.04        45.96 
TCGA-EM-A22M TCGA-EM-A22P TCGA-EM-A2CP TCGA-EM-A2P1 TCGA-EM-A3AJ TCGA-EM-A3FQ 
        3.48         5.72         2.96         6.38        13.05         4.93 
TCGA-ET-A39M TCGA-ET-A39R TCGA-ET-A3BV TCGA-ET-A3DO TCGA-ET-A3DQ TCGA-ET-A3DT 
       74.50        46.45         1.84        68.88        44.91         4.77 
TCGA-ET-A3DU TCGA-ET-A40S TCGA-ET-A4KN TCGA-FE-A230 TCGA-FE-A23A TCGA-FY-A3R6 
        4.54         5.00         4.01        47.41        62.70         0.76 
TCGA-GE-A2C6 TCGA-H2-A26U TCGA-IM-A3EB TCGA-KS-A4ID 
        6.77         3.48        35.18        20.48 

$subtype3
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-BJ-A290 
        6.48         8.25         4.01         0.72         4.87        20.58 
TCGA-BJ-A3PU TCGA-CE-A13K TCGA-CE-A3MD TCGA-CE-A482 TCGA-CE-A483 TCGA-DE-A0XZ 
       10.03         0.53         0.20         0.07         0.10        13.22 
TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN TCGA-DE-A4MA TCGA-DE-A4MB TCGA-DE-A4MC 
        7.59        31.30         9.40        16.64        11.57        17.39 
TCGA-DE-A4MD TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A13V TCGA-DJ-A13X 
       12.00       138.05        24.92        12.92        11.90         7.99 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QH TCGA-DJ-A1QI TCGA-DJ-A1QN 
       10.98        99.98        18.05         7.99         4.96         8.98 
TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR 
        1.02         5.95         9.99         7.96        20.48        10.45 
TCGA-DJ-A2PU TCGA-DJ-A2PV TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2PY TCGA-DJ-A2PZ 
       10.26         7.96         7.69         5.03         8.78         8.42 
TCGA-DJ-A2Q4 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 TCGA-DJ-A2Q8 TCGA-DJ-A2QA TCGA-DJ-A2QC 
        9.44         8.61         9.57         7.07        12.43         9.99 
TCGA-DJ-A3UK TCGA-DJ-A3UM TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UQ TCGA-DJ-A3UR 
        8.25        17.23        12.49        15.78         9.11        23.70 
TCGA-DJ-A3UU TCGA-DJ-A3V0 TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V4 TCGA-DJ-A3V5 
       17.69        25.02         7.40        17.75        14.56         7.86 
TCGA-DJ-A3V6 TCGA-DJ-A3V7 TCGA-DJ-A3V8 TCGA-DJ-A3V9 TCGA-DJ-A3VA TCGA-DJ-A3VB 
       14.93         9.83         8.52         7.13        11.93        11.21 
TCGA-DJ-A3VE TCGA-DJ-A3VJ TCGA-DJ-A4UL TCGA-DJ-A4UQ TCGA-DJ-A4UW TCGA-DJ-A4V2 
        4.41        17.36        11.93        10.78         9.44         3.09 
TCGA-DJ-A4V4 TCGA-DJ-A4V5 TCGA-DO-A1JZ TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E0 
        3.35        16.14        40.27         3.06        31.07        50.76 
TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A3X7 TCGA-E8-A417 
       40.18        46.72        20.88        14.04         1.48         0.26 
TCGA-E8-A418 TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A438 
        1.48         0.53         0.16         1.15         7.69         6.90 
TCGA-E8-A44K TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS 
        0.39        26.73       130.03       120.20         7.66        45.53 
TCGA-EL-A3CU TCGA-EL-A3CX TCGA-EL-A3D1 TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR 
      145.38        72.79        74.27         1.41        30.18       102.84 
TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GV TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 
       53.13       124.04        39.81        88.77        27.85        38.66 
TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3MY TCGA-EL-A3MZ 
       52.73       126.97       128.61        93.44        17.49        52.47 
TCGA-EL-A3N2 TCGA-EL-A3T1 TCGA-EL-A3T3 TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TB 
       12.16       129.57       116.91        41.29        95.38        82.82 
TCGA-EL-A3ZK TCGA-EL-A3ZL TCGA-EL-A3ZP TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EL-A4K1 
       31.46        50.30        43.50        45.53        44.61        19.59 
TCGA-EL-A4K4 TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KD TCGA-EL-A4KG TCGA-EL-A4KH 
       33.60         0.13        37.78        29.95        13.32        11.87 
TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A22I TCGA-EM-A22O TCGA-EM-A2CS 
       19.07         5.03         7.04         2.66         6.21         9.34 
TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A2P3 TCGA-EM-A3AK 
        5.79         2.89         9.34         6.28         0.33         9.27 
TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3SU TCGA-ET-A25G 
       11.21        11.05         8.61        16.64         8.78        35.77 
TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25N TCGA-ET-A25O 
       29.69        19.36        14.79        12.33         2.47         4.44 
TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A2MZ TCGA-ET-A2N0 TCGA-ET-A2N4 
       20.42        54.02        19.04        12.26         4.37         1.41 
TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39S TCGA-ET-A39T 
       11.90        67.66        43.04        13.35         0.66         7.79 
TCGA-ET-A3BN TCGA-ET-A3BO TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BT 
        1.68         5.82         4.18         2.43         5.52        24.72 
TCGA-ET-A3BU TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DP TCGA-ET-A3DR TCGA-ET-A3DW 
        1.28         2.37         4.50        50.50         2.14        24.69 
TCGA-ET-A40Q TCGA-ET-A40R TCGA-ET-A40T TCGA-FE-A22Z TCGA-FE-A231 TCGA-FE-A232 
        7.17         4.80         2.10        51.45        12.30        44.25 
TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A238 
       24.69        43.82       102.90        66.77        75.35        39.95 
TCGA-FE-A3PA TCGA-FE-A3PB TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB 
       94.42        85.12        61.41        62.89        46.06         4.08 
TCGA-FK-A3SE TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB TCGA-FY-A3BL TCGA-FY-A3ON 
       21.99         0.92        48.10        91.13         1.15         1.51 
TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A3YR TCGA-FY-A40K TCGA-FY-A40L TCGA-H2-A3RI 
        4.64         9.14         6.84         4.14         6.54         2.96 
TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-IM-A420 
        2.20         2.89        30.87         2.63         3.25         2.96 
TCGA-J8-A3NZ TCGA-J8-A3O1 TCGA-J8-A3O2 TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A3YH 
        2.24        13.64         1.35        24.69        22.29         5.72 
TCGA-J8-A42S TCGA-J8-A4HW TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A4I1 
        2.47         2.60         0.20       120.99        15.68         5.98 
TCGA-KS-A4I5 TCGA-KS-A4I7 TCGA-KS-A4I9 TCGA-KS-A4IB TCGA-KS-A4IC TCGA-L6-A4EP 
        6.71        12.36        17.42        64.54        14.70         0.59 
TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-L6-A4EU TCGA-MK-A4N6 TCGA-MK-A4N7 TCGA-MK-A4N9 
       11.87         1.12         0.72        16.60        14.47         8.71 

subtype1 subtype2 subtype3 
    0.03     0.10     0.07 
subtype1 subtype2 subtype3 
  130.72   147.42   145.38 
subtype1 subtype2 subtype3 
   7.560    7.055   11.720 
[1] "0.0 - 130.7 (7.6)"  "0.1 - 147.4 (7.1)"  "0.1 - 145.4 (11.7)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[109] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[175] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[199] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[217] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[259] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[265] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[271] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[283] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[295] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[307] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[313] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[319] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[331] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[355] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[361] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[373] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[379] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[385] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[391] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[403] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[409] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[415] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[109] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[175] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[199] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[217] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[259] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[265] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[271] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[283] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[295] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[307] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[313] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[319] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[331] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[355] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[361] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[373] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[379] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[385] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[391] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[403] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[409] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[415] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [31] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[109] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[175] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[181] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[199] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[217] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[259] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[265] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[271] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[283] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[295] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[307] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[313] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[319] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[331] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[355] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[361] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[373] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[379] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[385] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[391] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[403] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[409] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[415] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
D2V2, continuous
D2V3, binary
          cls
clus         0   1
  subtype1  93  29
  subtype2  46  15
  subtype3 177  64
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   93   29
  subtype2   46   15
  subtype3  177   64
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       93       46      177
  MALE         29       15       64
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              3                                            56
  subtype2              1                                            49
  subtype3              3                                           191
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     62
  subtype2                                                                      5
  subtype3                                                                     19
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                   6
  subtype3                                                                  28
D2V4, multiclass
D2V5, binary
          cls
clus         0   1
  subtype1   1 121
  subtype2   2  59
  subtype3  11 230
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1  121
  subtype2    2   59
  subtype3   11  230
     clus
vv    subtype1 subtype2 subtype3
  NO         1        2       11
  YES      121       59      230
D2V6, binary
          cls
clus         0   1
  subtype1 101   6
  subtype2  53   2
  subtype3 211   8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  101    6
  subtype2   53    2
  subtype3  211    8
     clus
vv    subtype1 subtype2 subtype3
  NO       101       53      211
  YES        6        2        8
          vv
clus        M0  M1  MX
  subtype1  57   3  61
  subtype2  35   0  26
  subtype3 145   5  91
D2V7, multiclass
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           17                       0   97                   0
  subtype2           14                       0   44                   1
  subtype3           82                      13  137                   0
D2V8, multiclass
          vv
clus       N0 N1 N1A N1B NX
  subtype1 83  7   8   6 18
  subtype2 27  6  14  11  3
  subtype3 85 36  59  43 18
D2V9, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 100   6   0   7
  subtype2  44   7   0   4
  subtype3 190  24   2  15
D2V10, multiclass
D2V11, continuous
D2V12, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      67       26        22        1         2         2
  subtype2      38        3        14        1         5         0
  subtype3     133       17        58        0        29         3
D2V13, multiclass
D2V14, binary
          cls
clus         0   1
  subtype1  49  71
  subtype2  26  33
  subtype3 107 129
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   49   71
  subtype2   26   33
  subtype3  107  129
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       49       26      107
  UNIFOCAL         71       33      129
D2V15, continuous

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 51  2
  subtype2 69  3
  subtype3 67  4
subtype1 subtype2 subtype3 
      53       72       71 
subtype1 subtype2 subtype3 
       2        3        4 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z3 TCGA-BJ-A0ZA TCGA-BJ-A0ZC 
       15.75        11.70         7.63         5.98         8.68         6.02 
TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-DE-A3KN 
        7.79         7.56         5.00         2.79         0.43         9.40 
TCGA-DJ-A13M TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QM TCGA-DJ-A2PN 
        9.01        14.93         7.99        18.05         0.99         9.99 
TCGA-DJ-A2PO TCGA-DJ-A2PV TCGA-DJ-A2PZ TCGA-DJ-A2Q2 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 
        7.96         7.96         8.42         6.77         8.61         9.57 
TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-E3-A3DZ TCGA-EL-A3CN TCGA-EL-A3CO 
       10.36        12.43         9.99        12.07       130.03        97.74 
TCGA-EL-A3CP TCGA-EL-A3CU TCGA-EL-A3CZ TCGA-EL-A3GV TCGA-EL-A3H1 TCGA-EM-A1CW 
      120.20       145.38        52.77        39.81        49.32         8.05 
TCGA-EM-A1YD TCGA-EM-A22L TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CQ 
       39.75         4.54        11.44         8.19         6.87         6.54 
TCGA-EM-A2CU TCGA-EM-A2OV TCGA-EM-A3AJ TCGA-EM-A3AN TCGA-EM-A3AP TCGA-ET-A2N5 
        5.79        11.61        13.05        11.21         5.29        38.86 
TCGA-ET-A39I TCGA-ET-A3BP TCGA-ET-A3DP TCGA-FY-A2QD TCGA-J8-A3O0 
        0.30         4.18        50.50         1.25        12.89 

$subtype2
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A192 TCGA-BJ-A28R TCGA-BJ-A290 
        6.48         8.25         4.01         8.09         4.87        20.58 
TCGA-CE-A3ME TCGA-DE-A0Y2 TCGA-DJ-A13O TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A1QD 
        0.23         7.59         7.07         3.02         8.71        10.98 
TCGA-DJ-A1QE TCGA-DJ-A1QG TCGA-DJ-A1QO TCGA-DJ-A2PP TCGA-DJ-A2PY TCGA-DJ-A2Q0 
       99.98         6.97         1.02         5.00         8.78         8.12 
TCGA-DJ-A2Q8 TCGA-DJ-A2QB TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E1 TCGA-E3-A3E3 
        7.07        10.85         3.06        31.07        40.18        20.88 
TCGA-E3-A3E5 TCGA-E8-A2EA TCGA-EL-A3CM TCGA-EL-A3CS TCGA-EL-A3CV TCGA-EL-A3GS 
       14.04         0.36        26.73        45.53        37.94        53.13 
TCGA-EL-A3GU TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3MW 
      124.04        27.85        38.66        52.73       126.97        93.44 
TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3N3 TCGA-EM-A1CT TCGA-EM-A1YA TCGA-EM-A1YB 
       52.47        12.16       147.42         5.03         7.13         9.34 
TCGA-EM-A1YC TCGA-EM-A22I TCGA-EM-A22J TCGA-EM-A22O TCGA-EM-A2CM TCGA-EM-A2CO 
       46.72         2.66         6.81         6.21        11.74         6.02 
TCGA-EM-A2OY TCGA-EM-A2P1 TCGA-ET-A25G TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25O 
       11.41         6.38        35.77        14.79        12.33         4.44 
TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A39P TCGA-ET-A39T TCGA-ET-A3BT TCGA-ET-A3DO 
       19.04         4.37        13.35         7.79        24.72        68.88 
TCGA-ET-A3DW TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A234 
       24.69        51.45        47.41        12.30        44.25        43.82 
TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A23A TCGA-FY-A3BL TCGA-IM-A3EB TCGA-J8-A3NZ 
       66.77        75.35        62.70         1.15        35.18         2.24 

$subtype3
TCGA-BJ-A0ZF TCGA-BJ-A191 TCGA-BJ-A28T TCGA-BJ-A28V TCGA-BJ-A28Z TCGA-CE-A13K 
        6.90         7.73         2.76         5.10         1.22         0.53 
TCGA-CE-A27D TCGA-CE-A3MD TCGA-DE-A2OL TCGA-DJ-A13V TCGA-DJ-A1QI TCGA-DJ-A1QL 
        0.10         0.20         5.29        11.90         4.96         6.97 
TCGA-DJ-A1QN TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PS TCGA-DJ-A2PU TCGA-DJ-A2PW 
        8.98        20.48        10.45         1.94        10.26         7.69 
TCGA-DJ-A2Q1 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DO-A1JZ TCGA-E3-A3E0 TCGA-EL-A3CR 
        9.34         9.44         9.90        40.27        50.76         7.66 
TCGA-EL-A3CX TCGA-EL-A3D1 TCGA-EL-A3GO TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR 
       72.79        74.27        39.32         1.41        30.18       102.84 
TCGA-EL-A3GW TCGA-EL-A3GX TCGA-EL-A3H2 TCGA-EL-A3H8 TCGA-EL-A3MY TCGA-EM-A1CU 
       37.25        88.77        33.47       128.61        17.49         7.04 
TCGA-EM-A1YE TCGA-EM-A22M TCGA-EM-A22Q TCGA-EM-A2CN TCGA-EM-A2CP TCGA-EM-A2CR 
       21.37         3.48         6.31        11.31         2.96         7.17 
TCGA-EM-A2CS TCGA-EM-A3AI TCGA-EM-A3AO TCGA-EM-A3FJ TCGA-ET-A2MZ TCGA-ET-A2N1 
        9.34         6.61        11.05        16.64        12.26        14.76 
TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39L TCGA-ET-A39M TCGA-ET-A39N TCGA-ET-A39R 
        1.41        11.90         1.94        74.50        83.34        46.45 
TCGA-ET-A3BN TCGA-ET-A3BS TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3BW TCGA-ET-A3BX 
        1.68         5.52         1.28         1.84         2.37         4.50 
TCGA-ET-A3DS TCGA-ET-A3DT TCGA-ET-A3DV TCGA-FE-A233 TCGA-FE-A235 TCGA-FE-A239 
        0.30         4.77       112.57        24.69       102.90        33.63 
TCGA-FY-A3ON TCGA-GE-A2C6 TCGA-H2-A2K9 TCGA-IM-A3ED TCGA-J8-A3O1 
        1.51         6.77         4.77        30.87        13.64 

subtype1 subtype2 subtype3 
    0.30     0.23     0.10 
subtype1 subtype2 subtype3 
  145.38   147.42   128.61 
subtype1 subtype2 subtype3 
    9.01    12.23     9.34 
[1] "0.3 - 145.4 (9.0)"  "0.2 - 147.4 (12.2)" "0.1 - 128.6 (9.3)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype3" "subtype2" "subtype1" "subtype3"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 37 16
  subtype2 52 20
  subtype3 49 24
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37   16
  subtype2   52   20
  subtype3   49   24
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       37       52       49
  MALE         16       20       24
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              0                                            29
  subtype2              2                                            47
  subtype3              2                                            57
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     23
  subtype2                                                                     14
  subtype3                                                                     13
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                   9
  subtype3                                                                   1
D3V4, multiclass
D3V5, binary
          cls
clus        0  1
  subtype1  0 53
  subtype2  9 63
  subtype3  4 69
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   53
  subtype2    9   63
  subtype3    4   69
     clus
vv    subtype1 subtype2 subtype3
  NO         0        9        4
  YES       53       63       69
D3V6, binary
          cls
clus        0  1
  subtype1 47  1
  subtype2 60  4
  subtype3 60  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   47    1
  subtype2   60    4
  subtype3   60    4
     clus
vv    subtype1 subtype2 subtype3
  NO        47       60       60
  YES        1        4        4
          vv
clus       M0 M1 MX
  subtype1 32  1 19
  subtype2 36  1 35
  subtype3 32  2 39
D3V7, multiclass
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE
  subtype1           11                       0   42
  subtype2           24                       7   38
  subtype3           13                       1   54
D3V8, multiclass
          vv
clus       N0 N1 N1A N1B NX
  subtype1 32  0   9   5  7
  subtype2 26 14  11  12  9
  subtype3 29  7  17   9 11
D3V9, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 41  5  1  5
  subtype2 54  9  0  4
  subtype3 57  3  0  4
D3V10, multiclass
D3V11, continuous
D3V12, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVC
  subtype1      26       10        13         1         1
  subtype2      26       13        21        12         0
  subtype3      49        9        10         3         2
D3V13, multiclass
D3V14, binary
          cls
clus        0  1
  subtype1 31 19
  subtype2 23 47
  subtype3 33 37
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   31   19
  subtype2   23   47
  subtype3   33   37
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       31       23       33
  UNIFOCAL         19       47       37
D3V15, continuous

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 79  5
  subtype2 27  3
  subtype3 81  1
subtype1 subtype2 subtype3 
      84       30       82 
subtype1 subtype2 subtype3 
       5        3        1 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z3 TCGA-BJ-A0ZA TCGA-BJ-A0ZC 
       15.75        11.70         7.63         5.98         8.68         6.02 
TCGA-BJ-A0ZE TCGA-BJ-A0ZF TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 
        7.79         6.90         7.56         5.00         2.79         0.43 
TCGA-BJ-A28V TCGA-DE-A2OL TCGA-DE-A3KN TCGA-DJ-A13M TCGA-DJ-A13O TCGA-DJ-A13W 
        5.10         5.29         9.40         9.01         7.07        14.93 
TCGA-DJ-A13X TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PQ 
        7.99         6.97         0.99         9.99         7.96        20.48 
TCGA-DJ-A2PS TCGA-DJ-A2PV TCGA-DJ-A2PZ TCGA-DJ-A2Q2 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 
        1.94         7.96         8.42         6.77         8.61         9.57 
TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-E3-A3DZ TCGA-EL-A3CN TCGA-EL-A3CO 
       10.36        12.43         9.99        12.07       130.03        97.74 
TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3CZ TCGA-EL-A3GO 
      120.20         7.66       145.38        37.94        52.77        39.32 
TCGA-EL-A3GQ TCGA-EL-A3GV TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EM-A1CT 
       30.18        39.81        37.25        49.32        33.47         5.03 
TCGA-EM-A1CW TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22L TCGA-EM-A22Q TCGA-EM-A2CJ 
        8.05        39.75        21.37         4.54         6.31        11.44 
TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR 
        8.19         6.87        11.31         2.96         6.54         7.17 
TCGA-EM-A2CU TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AN TCGA-EM-A3AP TCGA-EM-A3FJ 
        5.79         6.61        13.05        11.21         5.29        16.64 
TCGA-ET-A25M TCGA-ET-A2MZ TCGA-ET-A2N1 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L 
       12.33        12.26        14.76        38.86         0.30         1.94 
TCGA-ET-A39N TCGA-ET-A39P TCGA-ET-A3BP TCGA-ET-A3DP TCGA-ET-A3DS TCGA-ET-A3DV 
       83.34        13.35         4.18        50.50         0.30       112.57 
TCGA-FE-A232 TCGA-FE-A236 TCGA-FE-A239 TCGA-FY-A2QD TCGA-H2-A2K9 TCGA-J8-A3O0 
       44.25        66.77        33.63         1.25         4.77        12.89 

$subtype2
TCGA-BJ-A192 TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A1QG TCGA-DJ-A2PP TCGA-DJ-A2Q0 
        8.09         3.02         8.71         6.97         5.00         8.12 
TCGA-DJ-A2QB TCGA-E3-A3DY TCGA-E3-A3E5 TCGA-EL-A3CM TCGA-EL-A3CS TCGA-EL-A3MZ 
       10.85        31.07        14.04        26.73        45.53        52.47 
TCGA-EL-A3N3 TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A22I TCGA-EM-A22J 
      147.42         7.13         9.34        46.72         2.66         6.81 
TCGA-EM-A2CM TCGA-EM-A2CO TCGA-EM-A2OV TCGA-EM-A2OY TCGA-ET-A25O TCGA-ET-A2MY 
       11.74         6.02        11.61        11.41         4.44        19.04 
TCGA-ET-A2N0 TCGA-ET-A39T TCGA-ET-A3BT TCGA-FE-A231 TCGA-FE-A237 TCGA-FY-A3BL 
        4.37         7.79        24.72        12.30        75.35         1.15 

$subtype3
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A191 TCGA-BJ-A28R TCGA-BJ-A28T 
        6.48         8.25         4.01         7.73         4.87         2.76 
TCGA-BJ-A28Z TCGA-BJ-A290 TCGA-CE-A13K TCGA-CE-A27D TCGA-CE-A3MD TCGA-CE-A3ME 
        1.22        20.58         0.53         0.10         0.20         0.23 
TCGA-DE-A0Y2 TCGA-DJ-A13V TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QI 
        7.59        11.90        10.98        99.98        18.05         4.96 
TCGA-DJ-A1QN TCGA-DJ-A1QO TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PY 
        8.98         1.02        10.45        10.26         7.69         8.78 
TCGA-DJ-A2Q1 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q8 TCGA-DO-A1JZ TCGA-DO-A1K0 
        9.34         9.44         9.90         7.07        40.27         3.06 
TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E3 TCGA-E8-A2EA TCGA-EL-A3CX TCGA-EL-A3D1 
       50.76        40.18        20.88         0.36        72.79        74.27 
TCGA-EL-A3GP TCGA-EL-A3GR TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GX TCGA-EL-A3GY 
        1.41       102.84        53.13       124.04        88.77        27.85 
TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3MY 
       38.66        52.73       126.97       128.61        93.44        17.49 
TCGA-EL-A3N2 TCGA-EM-A1CU TCGA-EM-A22M TCGA-EM-A22O TCGA-EM-A2CS TCGA-EM-A2P1 
       12.16         7.04         3.48         6.21         9.34         6.38 
TCGA-EM-A3AO TCGA-ET-A25G TCGA-ET-A25L TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39M 
       11.05        35.77        14.79         1.41        11.90        74.50 
TCGA-ET-A39R TCGA-ET-A3BN TCGA-ET-A3BS TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3BW 
       46.45         1.68         5.52         1.28         1.84         2.37 
TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DT TCGA-ET-A3DW TCGA-FE-A22Z TCGA-FE-A230 
        4.50        68.88         4.77        24.69        51.45        47.41 
TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A23A TCGA-FY-A3ON TCGA-GE-A2C6 
       24.69        43.82       102.90        62.70         1.51         6.77 
TCGA-IM-A3EB TCGA-IM-A3ED TCGA-J8-A3NZ TCGA-J8-A3O1 
       35.18        30.87         2.24        13.64 

subtype1 subtype2 subtype3 
    0.30     1.15     0.10 
subtype1 subtype2 subtype3 
  145.38   147.42   128.61 
subtype1 subtype2 subtype3 
   9.205   10.095   10.355 
[1] "0.3 - 145.4 (9.2)"  "1.1 - 147.4 (10.1)" "0.1 - 128.6 (10.4)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[133] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[139] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[133] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[139] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [67] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[133] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[139] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype1" "subtype3"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 55 29
  subtype2 22  8
  subtype3 61 23
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   55   29
  subtype2   22    8
  subtype3   61   23
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       55       22       61
  MALE         29        8       23
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              1                                            49
  subtype2              2                                            13
  subtype3              1                                            71
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     32
  subtype2                                                                     14
  subtype3                                                                      4
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   2
  subtype2                                                                   1
  subtype3                                                                   8
D4V4, multiclass
D4V5, binary
          cls
clus        0  1
  subtype1  3 81
  subtype2  2 28
  subtype3  8 76
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   81
  subtype2    2   28
  subtype3    8   76
     clus
vv    subtype1 subtype2 subtype3
  NO         3        2        8
  YES       81       28       76
D4V6, binary
          cls
clus        0  1
  subtype1 75  2
  subtype2 24  4
  subtype3 68  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   75    2
  subtype2   24    4
  subtype3   68    3
     clus
vv    subtype1 subtype2 subtype3
  NO        75       24       68
  YES        2        4        3
          vv
clus       M0 M1 MX
  subtype1 41  2 40
  subtype2 12  0 18
  subtype3 47  2 35
D4V7, multiclass
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE
  subtype1           16                       0   66
  subtype2            7                       2   21
  subtype3           25                       6   47
D4V8, multiclass
          vv
clus       N0 N1 N1A N1B NX
  subtype1 49  2  12  10 11
  subtype2 13  2   3   5  7
  subtype3 25 17  22  11  9
D4V9, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 65  8  1  6
  subtype2 24  2  0  4
  subtype3 63  7  0  3
D4V10, multiclass
D4V11, continuous
D4V12, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVC
  subtype1      45       15        18         2         2
  subtype2       7        8        10         5         0
  subtype3      49        9        16         9         1
D4V13, multiclass
D4V14, binary
          cls
clus        0  1
  subtype1 39 42
  subtype2 11 18
  subtype3 37 43
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   42
  subtype2   11   18
  subtype3   37   43
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       39       11       37
  UNIFOCAL         42       18       43
D4V15, continuous

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2        0   1
  subtype1 117   3
  subtype2  48   1
  subtype3 102   0
  subtype4 131   6
subtype1 subtype2 subtype3 subtype4 
     120       49      102      137 
subtype1 subtype2 subtype3 subtype4 
       3        1        0        6 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       15.75        11.70         7.63         8.68         6.02         7.79 
TCGA-BJ-A0ZF TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 
        6.90         7.56         2.79         0.43         7.73         8.09 
TCGA-BJ-A28V TCGA-BJ-A3PT TCGA-BJ-A45C TCGA-CE-A484 TCGA-DE-A2OL TCGA-DE-A4M9 
        5.10        12.07         5.72         0.39         5.29         4.87 
TCGA-DJ-A13M TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL 
        9.01         3.02         8.71        14.93         6.97         6.97 
TCGA-DJ-A1QM TCGA-DJ-A2PP TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP 
        0.99         5.00         8.12         6.77        10.85         5.49 
TCGA-DJ-A3UT TCGA-DJ-A3UV TCGA-DJ-A3UZ TCGA-DJ-A3V4 TCGA-DJ-A3VG TCGA-DJ-A3VM 
       15.42        19.40        12.76        14.56         8.32        15.81 
TCGA-DJ-A4UR TCGA-E3-A3DZ TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A434 TCGA-EL-A3CX 
       10.98        12.07         0.16         0.72         0.23        72.79 
TCGA-EL-A3CZ TCGA-EL-A3GO TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3T0 
       52.77        39.32        37.25        49.32        33.47       130.72 
TCGA-EL-A3T2 TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 TCGA-EL-A4K6 
       32.48        78.97        48.16        45.80        19.53        28.73 
TCGA-EL-A4KD TCGA-EL-A4KI TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC 
       29.95         8.68         8.05         7.13         9.34        46.72 
TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N 
       39.75        21.37         6.81         6.64         4.54         6.87 
TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CM TCGA-EM-A2CN 
        6.31        11.44         8.19         6.87        11.74        11.31 
TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT TCGA-EM-A2OV 
        6.02         2.96         6.54         7.17        10.49        11.61 
TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AP 
        7.20        11.41         7.36         6.61        13.05         5.29 
TCGA-EM-A3AR TCGA-EM-A3O8 TCGA-EM-A3OB TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N3 
        6.81         0.49         2.33         0.33         0.49         6.51 
TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A39S TCGA-ET-A3DR 
       38.86         0.30         1.94        83.34         0.66         2.14 
TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P TCGA-ET-A4KQ TCGA-FE-A239 TCGA-FK-A3SD 
        0.30       112.57         3.22         1.94        33.63         0.89 
TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R7 TCGA-FY-A3R9 
        1.25         1.64         0.99         0.59         0.03         2.17 
TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A40M TCGA-FY-A40N TCGA-H2-A2K9 TCGA-H2-A3RH 
        0.76         0.95         4.54         0.89         4.77         4.87 
TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A3YD TCGA-J8-A4HY TCGA-KS-A41I TCGA-KS-A41L 
        9.63        12.89        31.82         0.20        15.95        86.70 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0ZJ TCGA-BJ-A28T TCGA-BJ-A28X TCGA-BJ-A28Z TCGA-BJ-A3PR 
        5.98         5.00         2.76        17.49         1.22         8.02 
TCGA-CE-A27D TCGA-CE-A481 TCGA-CE-A485 TCGA-DJ-A13O TCGA-DJ-A2PX TCGA-DJ-A2Q1 
        0.10         0.10         0.10         7.07         5.03         9.34 
TCGA-DJ-A2Q3 TCGA-DJ-A2Q9 TCGA-DJ-A3US TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3VD 
        9.21        10.36        20.71        43.00        11.34        11.51 
TCGA-DJ-A4UT TCGA-DJ-A4UW TCGA-DJ-A4V0 TCGA-DO-A2HM TCGA-E8-A2EA TCGA-E8-A413 
       12.20         9.44         9.34         2.30         0.36         0.33 
TCGA-E8-A414 TCGA-E8-A44M TCGA-EL-A3CO TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3GP 
        0.23         0.39        97.74       145.38        37.94         1.41 
TCGA-EL-A3H5 TCGA-EL-A3TA TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EM-A22P TCGA-EM-A2P1 
       52.73        54.25        43.50         7.04         5.72         6.38 
TCGA-EM-A3FQ TCGA-ET-A39R TCGA-ET-A3BO TCGA-ET-A3DQ TCGA-ET-A3DT TCGA-ET-A40R 
        4.93        46.45         5.82        44.91         4.77         4.80 
TCGA-ET-A40S TCGA-FE-A3PB TCGA-FY-A3R6 TCGA-GE-A2C6 TCGA-H2-A26U TCGA-J8-A3O2 
        5.00        85.12         0.76         6.77         3.48         1.35 
TCGA-KS-A4ID 
       20.48 

$subtype3
TCGA-BJ-A0Z5 TCGA-BJ-A290 TCGA-CE-A13K TCGA-CE-A3MD TCGA-CE-A482 TCGA-DE-A0XZ 
        6.48        20.58         0.53         0.20         0.07        13.22 
TCGA-DE-A3KN TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13V TCGA-DJ-A13X TCGA-DJ-A1QF 
        9.40       138.05        24.92        11.90         7.99        18.05 
TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PS 
        4.96         8.98         7.96        20.48        10.45         1.94 
TCGA-DJ-A2PU TCGA-DJ-A2PV TCGA-DJ-A2PW TCGA-DJ-A2Q5 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 
       10.26         7.96         7.69         9.90         8.61         9.57 
TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UR 
       12.43         9.99         8.25        12.49        15.78        23.70 
TCGA-DJ-A3UU TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V9 TCGA-DJ-A3VA TCGA-DJ-A3VE 
       17.69         7.40        17.75         7.13        11.93         4.41 
TCGA-DJ-A4UL TCGA-DO-A1JZ TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E2 TCGA-E3-A3E5 
       11.93        40.27        31.07        50.76        46.72        14.04 
TCGA-E8-A432 TCGA-E8-A438 TCGA-EL-A3CP TCGA-EL-A3GQ TCGA-EL-A3GV TCGA-EL-A3MW 
        0.53         6.90       120.20        30.18        39.81        93.44 
TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZL TCGA-EL-A3ZQ 
       41.29        95.38        82.82        77.33        50.30        45.53 
TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KH TCGA-EM-A1CS TCGA-EM-A2CS TCGA-EM-A2CU 
        0.13        37.78        11.87        19.07         9.34         5.79 
TCGA-EM-A2OX TCGA-EM-A3AK TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ 
        2.89         9.27        11.21        11.05         8.61        16.64 
TCGA-ET-A25K TCGA-ET-A25O TCGA-ET-A2MZ TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39K 
       19.36         4.44        12.26         1.41        11.90        67.66 
TCGA-ET-A39M TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BW TCGA-ET-A3DP 
       74.50         4.18         2.43         5.52         2.37        50.50 
TCGA-ET-A40T TCGA-FE-A235 TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 
        2.10       102.90        94.42        61.41        62.89        46.06 
TCGA-FK-A3SB TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB TCGA-FY-A40K TCGA-H2-A3RI 
        4.08         0.92        48.10        91.13         4.14         2.96 
TCGA-J8-A3YH TCGA-J8-A42S TCGA-KS-A41F TCGA-KS-A4I1 TCGA-KS-A4I5 TCGA-KS-A4I7 
        5.72         2.47       120.99         5.98         6.71        12.36 
TCGA-KS-A4IB TCGA-KS-A4IC TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-MK-A4N7 TCGA-MK-A4N9 
       64.54        14.70        11.87         1.12        14.47         8.71 

$subtype4
TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-BJ-A3PU TCGA-CE-A3ME 
        8.25         4.01         0.72         4.87        10.03         0.23 
TCGA-CE-A483 TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A4MC TCGA-DE-A4MD TCGA-DJ-A13U 
        0.10         7.59        31.30        17.39        12.00        12.92 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QH TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN 
       10.98        99.98         7.99         1.02         5.95         9.99 
TCGA-DJ-A2PT TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q4 TCGA-DJ-A3UM TCGA-DJ-A3UQ 
        9.60         8.78         8.42         9.44        17.23         9.11 
TCGA-DJ-A3UY TCGA-DJ-A3V0 TCGA-DJ-A3V5 TCGA-DJ-A3V6 TCGA-DJ-A3V7 TCGA-DJ-A3V8 
       13.32        25.02         7.86        14.93         9.83         8.52 
TCGA-DJ-A3VB TCGA-DJ-A3VF TCGA-DJ-A3VJ TCGA-DJ-A4UQ TCGA-DJ-A4V2 TCGA-DJ-A4V4 
       11.21         7.73        17.36        10.78         3.09         3.35 
TCGA-DJ-A4V5 TCGA-DO-A1K0 TCGA-E3-A3E1 TCGA-E3-A3E3 TCGA-E8-A242 TCGA-E8-A3X7 
       16.14         3.06        40.18        20.88         1.12         1.48 
TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A433 TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A44K 
        0.26         1.48         0.16         1.15         7.69         0.39 
TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3GR TCGA-EL-A3GS 
       26.73       130.03         7.66        45.53       102.84        53.13 
TCGA-EL-A3GU TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H7 TCGA-EL-A3H8 
      124.04        88.77        27.85        38.66       126.97       128.61 
TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3N3 TCGA-EL-A3T1 TCGA-EL-A3T3 
       17.49        52.47        12.16       147.42       129.57       116.91 
TCGA-EL-A3T6 TCGA-EL-A3T9 TCGA-EL-A3ZK TCGA-EL-A3ZT TCGA-EL-A4JX TCGA-EL-A4K1 
       98.20         5.72        31.46        44.61        45.96        19.59 
TCGA-EL-A4K4 TCGA-EL-A4KG TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A22I TCGA-EM-A22O 
       33.60        13.32         5.03         7.04         2.66         6.21 
TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A2P3 TCGA-EM-A3SU TCGA-ET-A25G TCGA-ET-A25J 
        9.34         6.28         0.33         8.78        35.77        29.69 
TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25N TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY 
       14.79        12.33         2.47        20.42        54.02        19.04 
TCGA-ET-A2N0 TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BT 
        4.37        43.04        13.35         7.79         1.68        24.72 
TCGA-ET-A3BU TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DW TCGA-ET-A40Q TCGA-ET-A4KN 
        1.28         4.50        68.88        24.69         7.17         4.01 
TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A236 
       51.45        47.41        12.30        24.69        43.82        66.77 
TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A23A TCGA-FK-A3SE TCGA-FY-A3BL TCGA-FY-A3I4 
       75.35        39.95        62.70        21.99         1.15         1.12 
TCGA-FY-A3ON TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A3YR TCGA-FY-A40L TCGA-H2-A421 
        1.51         4.64         9.14         6.84         6.54         2.20 
TCGA-H2-A422 TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-IM-A420 
        2.89        35.18        30.87         2.63         3.25         2.96 
TCGA-J8-A3NZ TCGA-J8-A3O1 TCGA-J8-A3YE TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A4HW 
        2.24        13.64        27.81        24.69        22.29         2.60 
TCGA-KS-A41J TCGA-KS-A4I3 TCGA-KS-A4I9 TCGA-L6-A4EU TCGA-MK-A4N6 
       15.68        12.03        17.42         0.72        16.60 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.10     0.07     0.10 
subtype1 subtype2 subtype3 subtype4 
  130.72   145.38   138.05   147.42 
subtype1 subtype2 subtype3 subtype4 
   7.280    6.770   11.885   12.000 
[1] "0.0 - 130.7 (7.3)"  "0.1 - 145.4 (6.8)"  "0.1 - 138.1 (11.9)"
[4] "0.1 - 147.4 (12.0)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype4" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype4" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
 [31] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype1"
 [37] "subtype2" "subtype3" "subtype4" "subtype4" "subtype1" "subtype3"
 [43] "subtype1" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [55] "subtype3" "subtype4" "subtype4" "subtype3" "subtype1" "subtype4"
 [61] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
 [67] "subtype4" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype4" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [79] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype4"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [91] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
 [97] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[103] "subtype2" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
[109] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[115] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype4"
[121] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
[127] "subtype2" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[133] "subtype3" "subtype4" "subtype2" "subtype3" "subtype1" "subtype3"
[139] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[151] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[157] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[163] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[169] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
[175] "subtype4" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[181] "subtype1" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
[187] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[193] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[199] "subtype2" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[205] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype1"
[211] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
[217] "subtype3" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[223] "subtype4" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype4" "subtype2" "subtype1" "subtype1" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[253] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[259] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[265] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[271] "subtype1" "subtype4" "subtype4" "subtype1" "subtype4" "subtype3"
[277] "subtype4" "subtype4" "subtype4" "subtype3" "subtype1" "subtype4"
[283] "subtype4" "subtype4" "subtype3" "subtype4" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[295] "subtype1" "subtype4" "subtype4" "subtype2" "subtype1" "subtype4"
[301] "subtype4" "subtype2" "subtype3" "subtype3" "subtype3" "subtype4"
[307] "subtype4" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
[313] "subtype1" "subtype1" "subtype2" "subtype1" "subtype4" "subtype1"
[319] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype1"
[325] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[331] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype3"
[337] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[343] "subtype4" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
[349] "subtype4" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
[355] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
[361] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
[367] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[373] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[379] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[385] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[391] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[397] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
[403] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype4" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype4" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
 [31] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype1"
 [37] "subtype2" "subtype3" "subtype4" "subtype4" "subtype1" "subtype3"
 [43] "subtype1" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [55] "subtype3" "subtype4" "subtype4" "subtype3" "subtype1" "subtype4"
 [61] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
 [67] "subtype4" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype4" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [79] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype4"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [91] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
 [97] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[103] "subtype2" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
[109] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[115] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype4"
[121] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
[127] "subtype2" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[133] "subtype3" "subtype4" "subtype2" "subtype3" "subtype1" "subtype3"
[139] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[151] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[157] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[163] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[169] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
[175] "subtype4" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[181] "subtype1" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
[187] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[193] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[199] "subtype2" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[205] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype1"
[211] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
[217] "subtype3" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[223] "subtype4" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype4" "subtype2" "subtype1" "subtype1" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[253] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[259] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[265] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[271] "subtype1" "subtype4" "subtype4" "subtype1" "subtype4" "subtype3"
[277] "subtype4" "subtype4" "subtype4" "subtype3" "subtype1" "subtype4"
[283] "subtype4" "subtype4" "subtype3" "subtype4" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[295] "subtype1" "subtype4" "subtype4" "subtype2" "subtype1" "subtype4"
[301] "subtype4" "subtype2" "subtype3" "subtype3" "subtype3" "subtype4"
[307] "subtype4" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
[313] "subtype1" "subtype1" "subtype2" "subtype1" "subtype4" "subtype1"
[319] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype1"
[325] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[331] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype3"
[337] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[343] "subtype4" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
[349] "subtype4" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
[355] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
[361] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
[367] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[373] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[379] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[385] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[391] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[397] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
[403] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype4" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype4" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype1" "subtype4" "subtype1" "subtype3" "subtype2"
 [31] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype1"
 [37] "subtype2" "subtype3" "subtype4" "subtype4" "subtype1" "subtype3"
 [43] "subtype1" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [55] "subtype3" "subtype4" "subtype4" "subtype3" "subtype1" "subtype4"
 [61] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
 [67] "subtype4" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype4" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [79] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype4"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [91] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
 [97] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[103] "subtype2" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
[109] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[115] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype4"
[121] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
[127] "subtype2" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[133] "subtype3" "subtype4" "subtype2" "subtype3" "subtype1" "subtype3"
[139] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype2"
[145] "subtype4" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[151] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[157] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype2"
[163] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[169] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype4"
[175] "subtype4" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[181] "subtype1" "subtype4" "subtype2" "subtype4" "subtype4" "subtype3"
[187] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[193] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype4"
[199] "subtype2" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[205] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype1"
[211] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
[217] "subtype3" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[223] "subtype4" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype4" "subtype2" "subtype1" "subtype1" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[253] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[259] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[265] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[271] "subtype1" "subtype4" "subtype4" "subtype1" "subtype4" "subtype3"
[277] "subtype4" "subtype4" "subtype4" "subtype3" "subtype1" "subtype4"
[283] "subtype4" "subtype4" "subtype3" "subtype4" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[295] "subtype1" "subtype4" "subtype4" "subtype2" "subtype1" "subtype4"
[301] "subtype4" "subtype2" "subtype3" "subtype3" "subtype3" "subtype4"
[307] "subtype4" "subtype3" "subtype4" "subtype4" "subtype3" "subtype2"
[313] "subtype1" "subtype1" "subtype2" "subtype1" "subtype4" "subtype1"
[319] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype1"
[325] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[331] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype3"
[337] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[343] "subtype4" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
[349] "subtype4" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
[355] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
[361] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
[367] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[373] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
[379] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[385] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype1"
[391] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[397] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
[403] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
D5V2, continuous
D5V3, binary
          cls
clus         0   1
  subtype1  90  30
  subtype2  38  13
  subtype3  78  26
  subtype4 101  37
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   90   30
  subtype2   38   13
  subtype3   78   26
  subtype4  101   37
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       90       38       78      101
  MALE         30       13       26       37
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              3                                            52
  subtype2              1                                            41
  subtype3              1                                            86
  subtype4              2                                           107
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     64
  subtype2                                                                      4
  subtype3                                                                     15
  subtype4                                                                      3
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                   5
  subtype3                                                                   2
  subtype4                                                                  26
D5V4, multiclass
D5V5, binary
          cls
clus         0   1
  subtype1   1 119
  subtype2   0  51
  subtype3   2 102
  subtype4  10 128
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1  119
  subtype2    0   51
  subtype3    2  102
  subtype4   10  128
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        2       10
  YES      119       51      102      128
D5V6, binary
          cls
clus         0   1
  subtype1 102   6
  subtype2  44   1
  subtype3  89   4
  subtype4 119   5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  102    6
  subtype2   44    1
  subtype3   89    4
  subtype4  119    5
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO       102       44       89      119
  YES        6        1        4        5
          vv
clus       M0 M1 MX
  subtype1 52  3 64
  subtype2 36  0 15
  subtype3 63  2 39
  subtype4 80  3 55
D5V7, multiclass
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           16                       1   97                   0
  subtype2           12                       2   35                   0
  subtype3           27                       0   74                   0
  subtype4           55                      10   64                   1
D5V8, multiclass
          vv
clus       N0 N1 N1A N1B NX
  subtype1 81  6   8   7 18
  subtype2 21  5  14  11  0
  subtype3 43 10  29  15  7
  subtype4 46 27  26  26 13
D5V9, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1  99   6   0   7
  subtype2  34   7   0   5
  subtype3  85   7   1   6
  subtype4 107  15   1   8
D5V10, multiclass
D5V11, continuous
D5V12, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      65       25        22        1         3         2
  subtype2      36        2         9        0         4         0
  subtype3      59       12        22        0         9         1
  subtype4      72        7        37        1        19         2
D5V13, multiclass
D5V14, binary
          cls
clus        0  1
  subtype1 51 67
  subtype2 24 25
  subtype3 55 46
  subtype4 47 89
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   51   67
  subtype2   24   25
  subtype3   55   46
  subtype4   47   89
            clus
vv           subtype1 subtype2 subtype3 subtype4
  MULTIFOCAL       51       24       55       47
  UNIFOCAL         67       25       46       89
D5V15, continuous

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2        0   1
  subtype1  80   0
  subtype2 160   6
  subtype3 101   3
  subtype4  57   1
subtype1 subtype2 subtype3 subtype4 
      80      166      104       58 
subtype1 subtype2 subtype3 subtype4 
       0        6        3        1 
$subtype1
TCGA-BJ-A290 TCGA-CE-A13K TCGA-CE-A3MD TCGA-CE-A481 TCGA-CE-A482 TCGA-DE-A3KN 
       20.58         0.53         0.20         0.10         0.07         9.40 
TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13V TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QI 
      138.05        24.92        11.90         7.99        18.05         4.96 
TCGA-DJ-A1QN TCGA-DJ-A2PQ TCGA-DJ-A2PU TCGA-DJ-A2PV TCGA-DJ-A2PW TCGA-DJ-A2Q7 
        8.98        20.48        10.26         7.96         7.69         9.57 
TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UR TCGA-DJ-A3V9 
        9.99         8.25        12.49        15.78        23.70         7.13 
TCGA-DJ-A4UL TCGA-DO-A1JZ TCGA-E3-A3E0 TCGA-E3-A3E5 TCGA-E8-A432 TCGA-E8-A438 
       11.93        40.27        50.76        14.04         0.53         6.90 
TCGA-EL-A3CP TCGA-EL-A3GQ TCGA-EL-A3GV TCGA-EL-A3MW TCGA-EL-A3T7 TCGA-EL-A3T8 
      120.20        30.18        39.81        93.44        41.29        95.38 
TCGA-EL-A3TB TCGA-EL-A3ZL TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KD TCGA-EL-A4KH 
       82.82        50.30         0.13        37.78        29.95        11.87 
TCGA-EM-A1CS TCGA-EM-A2CS TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A3AK TCGA-EM-A3AN 
       19.07         9.34         5.79         2.89         9.27        11.21 
TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-ET-A25K TCGA-ET-A25O TCGA-ET-A2MZ 
       11.05         8.61        16.64        19.36         4.44        12.26 
TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BW 
        1.41        11.90        67.66         4.18         2.43         2.37 
TCGA-ET-A3DP TCGA-FE-A235 TCGA-FE-A3PA TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB 
       50.50       102.90        94.42        62.89        46.06         4.08 
TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB TCGA-FY-A40K TCGA-J8-A3YH TCGA-J8-A42S 
        0.92        48.10        91.13         4.14         5.72         2.47 
TCGA-KS-A41F TCGA-KS-A4I1 TCGA-KS-A4I5 TCGA-KS-A4I7 TCGA-L6-A4EQ TCGA-L6-A4ET 
      120.99         5.98         6.71        12.36        11.87         1.12 
TCGA-MK-A4N7 TCGA-MK-A4N9 
       14.47         8.71 

$subtype2
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-BJ-A28X 
        6.48         8.25         4.01         0.72         4.87        17.49 
TCGA-BJ-A3PR TCGA-BJ-A3PU TCGA-CE-A3ME TCGA-CE-A483 TCGA-DE-A0Y2 TCGA-DE-A0Y3 
        8.02        10.03         0.23         0.10         7.59        31.30 
TCGA-DE-A4MC TCGA-DE-A4MD TCGA-DJ-A13U TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QH 
       17.39        12.00        12.92        10.98        99.98         7.99 
TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PR TCGA-DJ-A2PT 
        1.02         5.95         9.99         7.96        10.45         9.60 
TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q4 TCGA-DJ-A2Q6 
        8.78         8.42         9.34         9.21         9.44         8.61 
TCGA-DJ-A2Q9 TCGA-DJ-A3UM TCGA-DJ-A3UQ TCGA-DJ-A3UW TCGA-DJ-A3V0 TCGA-DJ-A3V5 
       10.36        17.23         9.11        43.00        25.02         7.86 
TCGA-DJ-A3V6 TCGA-DJ-A3V7 TCGA-DJ-A3V8 TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VD 
       14.93         9.83         8.52        11.93        11.21        11.51 
TCGA-DJ-A3VE TCGA-DJ-A3VF TCGA-DJ-A3VJ TCGA-DJ-A4V2 TCGA-DJ-A4V5 TCGA-DO-A1K0 
        4.41         7.73        17.36         3.09        16.14         3.06 
TCGA-DO-A2HM TCGA-E3-A3DY TCGA-E3-A3E1 TCGA-E3-A3E3 TCGA-E8-A242 TCGA-E8-A2EA 
        2.30        31.07        40.18        20.88         1.12         0.36 
TCGA-E8-A3X7 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A433 TCGA-E8-A44K TCGA-EL-A3CM 
        1.48         0.26         1.48         0.16         0.39        26.73 
TCGA-EL-A3CN TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3GP 
      130.03         7.66        45.53       145.38        37.94         1.41 
TCGA-EL-A3GR TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 
      102.84        53.13       124.04        88.77        27.85        38.66 
TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N2 
       52.73       126.97       128.61        17.49        52.47        12.16 
TCGA-EL-A3N3 TCGA-EL-A3T1 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T9 TCGA-EL-A3ZG 
      147.42       129.57       116.91        98.20         5.72        77.33 
TCGA-EL-A3ZK TCGA-EL-A3ZP TCGA-EL-A3ZT TCGA-EL-A4JX TCGA-EL-A4K1 TCGA-EL-A4K4 
       31.46        43.50        44.61        45.96        19.59        33.60 
TCGA-EL-A4KG TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A22I TCGA-EM-A22O TCGA-EM-A22P 
       13.32         5.03         7.04         2.66         6.21         5.72 
TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P3 TCGA-EM-A3FQ TCGA-EM-A3SU 
        9.34         6.28         6.38         0.33         4.93         8.78 
TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25N TCGA-ET-A25R 
       35.77        29.69        14.79        12.33         2.47        20.42 
TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39T TCGA-ET-A3BN 
       54.02        19.04        43.04        13.35         7.79         1.68 
TCGA-ET-A3BO TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DR 
        5.82        24.72         1.28         4.50        68.88         2.14 
TCGA-ET-A3DW TCGA-ET-A40Q TCGA-ET-A40S TCGA-ET-A4KN TCGA-FE-A22Z TCGA-FE-A230 
       24.69         7.17         5.00         4.01        51.45        47.41 
TCGA-FE-A231 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A238 
       12.30        24.69        43.82        66.77        75.35        39.95 
TCGA-FE-A23A TCGA-FE-A3PB TCGA-FE-A3PC TCGA-FK-A3SE TCGA-FY-A3BL TCGA-FY-A3I4 
       62.70        85.12        61.41        21.99         1.15         1.12 
TCGA-FY-A3ON TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A3YR TCGA-FY-A40L TCGA-GE-A2C6 
        1.51         4.64         9.14         6.84         6.54         6.77 
TCGA-H2-A26U TCGA-H2-A3RI TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB TCGA-IM-A3ED 
        3.48         2.96         2.20         2.89        35.18        30.87 
TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-IM-A420 TCGA-J8-A3NZ TCGA-J8-A3O1 TCGA-J8-A3YE 
        2.63         3.25         2.96         2.24        13.64        27.81 
TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A4HW TCGA-KS-A41J TCGA-KS-A4I3 TCGA-KS-A4I9 
       24.69        22.29         2.60        15.68        12.03        17.42 
TCGA-KS-A4IB TCGA-KS-A4IC TCGA-L6-A4EU TCGA-MK-A4N6 
       64.54        14.70         0.72        16.60 

$subtype3
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       15.75        11.70         7.63         8.68         6.02         7.79 
TCGA-BJ-A0ZF TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 
        6.90         7.56         2.79         0.43         7.73         8.09 
TCGA-BJ-A28V TCGA-BJ-A3PT TCGA-BJ-A45C TCGA-CE-A484 TCGA-DE-A2OL TCGA-DE-A4M9 
        5.10        12.07         5.72         0.39         5.29         4.87 
TCGA-DJ-A13M TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A2PP 
        9.01         8.71        14.93         6.97         6.97         5.00 
TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3UT TCGA-DJ-A3VG 
        8.12         6.77        10.85         5.49        15.42         8.32 
TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-E3-A3DZ TCGA-E8-A416 TCGA-EL-A3CX TCGA-EL-A3CZ 
       15.81        10.98        12.07         0.72        72.79        52.77 
TCGA-EL-A3GO TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3T2 TCGA-EL-A3ZH 
       39.32        37.25        49.32        33.47        32.48        78.97 
TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 TCGA-EL-A4K6 TCGA-EL-A4KI TCGA-EM-A1CW 
       48.16        45.80        19.53        28.73         8.68         8.05 
TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22J 
        7.13         9.34        46.72        39.75        21.37         6.81 
TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK 
        6.64         4.54         6.87         6.31        11.44         8.19 
TCGA-EM-A2CL TCGA-EM-A2CM TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CQ TCGA-EM-A2CR 
        6.87        11.74        11.31         6.02         6.54         7.17 
TCGA-EM-A2CT TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI 
       10.49        11.61         7.20        11.41         7.36         6.61 
TCGA-EM-A3AJ TCGA-EM-A3AP TCGA-EM-A3O8 TCGA-EM-A3OB TCGA-ET-A25I TCGA-ET-A25P 
       13.05         5.29         0.49         2.33         0.33         0.49 
TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A3DS 
        6.51        38.86         0.30         1.94        83.34         0.30 
TCGA-ET-A3DV TCGA-ET-A40P TCGA-ET-A4KQ TCGA-FE-A239 TCGA-FK-A3SD TCGA-FY-A2QD 
      112.57         3.22         1.94        33.63         0.89         1.25 
TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA 
        1.64         0.99         0.59         2.17         0.76         0.95 
TCGA-FY-A40M TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A4HY 
        4.54         4.77         4.87         9.63        12.89         0.20 
TCGA-KS-A41I TCGA-KS-A41L 
       15.95        86.70 

$subtype4
TCGA-BJ-A0Z3 TCGA-BJ-A0ZJ TCGA-BJ-A28T TCGA-BJ-A28Z TCGA-CE-A27D TCGA-CE-A485 
        5.98         5.00         2.76         1.22         0.10         0.10 
TCGA-DE-A0XZ TCGA-DJ-A13O TCGA-DJ-A13R TCGA-DJ-A1QM TCGA-DJ-A2PS TCGA-DJ-A2PX 
       13.22         7.07         3.02         0.99         1.94         5.03 
TCGA-DJ-A2Q5 TCGA-DJ-A2QA TCGA-DJ-A3US TCGA-DJ-A3UU TCGA-DJ-A3UV TCGA-DJ-A3UX 
        9.90        12.43        20.71        17.69        19.40        11.34 
TCGA-DJ-A3UY TCGA-DJ-A3UZ TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V4 TCGA-DJ-A4UQ 
       13.32        12.76         7.40        17.75        14.56        10.78 
TCGA-DJ-A4UT TCGA-DJ-A4UW TCGA-DJ-A4V0 TCGA-DJ-A4V4 TCGA-E3-A3E2 TCGA-E8-A413 
       12.20         9.44         9.34         3.35        46.72         0.33 
TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A434 TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A44M 
        0.23         0.16         0.23         1.15         7.69         0.39 
TCGA-EL-A3CO TCGA-EL-A3T0 TCGA-EL-A3TA TCGA-EL-A3ZQ TCGA-EL-A3ZS TCGA-EM-A2CP 
       97.74       130.72        54.25        45.53         7.04         2.96 
TCGA-EM-A3AR TCGA-ET-A2N0 TCGA-ET-A39M TCGA-ET-A39R TCGA-ET-A39S TCGA-ET-A3BS 
        6.81         4.37        74.50        46.45         0.66         5.52 
TCGA-ET-A3DQ TCGA-ET-A3DT TCGA-ET-A40R TCGA-ET-A40T TCGA-FY-A3R6 TCGA-FY-A3R7 
       44.91         4.77         4.80         2.10         0.76         0.03 
TCGA-FY-A40N TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-KS-A4ID 
        0.89         1.35        31.82        20.48 

subtype1 subtype2 subtype3 subtype4 
    0.07     0.10     0.20     0.03 
subtype1 subtype2 subtype3 subtype4 
  138.05   147.42   112.57   130.72 
subtype1 subtype2 subtype3 subtype4 
  11.870   11.095    7.595    6.925 
[1] "0.1 - 138.1 (11.9)" "0.1 - 147.4 (11.1)" "0.2 - 112.6 (7.6)" 
[4] "0.0 - 130.7 (6.9)" 
  [1] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype2" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype4"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [37] "subtype4" "subtype4" "subtype2" "subtype2" "subtype3" "subtype1"
 [43] "subtype3" "subtype2" "subtype2" "subtype3" "subtype4" "subtype1"
 [49] "subtype4" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype4" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype4"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
 [79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype4" "subtype2" "subtype1" "subtype2" "subtype4" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype2" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[109] "subtype4" "subtype4" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype1" "subtype4" "subtype3"
[127] "subtype4" "subtype4" "subtype4" "subtype2" "subtype4" "subtype2"
[133] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[139] "subtype2" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype4" "subtype4" "subtype4" "subtype3" "subtype2"
[151] "subtype2" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
[157] "subtype1" "subtype2" "subtype4" "subtype2" "subtype2" "subtype4"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[199] "subtype4" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[205] "subtype2" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[223] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[247] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[253] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[259] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[277] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[283] "subtype2" "subtype2" "subtype1" "subtype4" "subtype3" "subtype1"
[289] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[295] "subtype3" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[301] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype2"
[307] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype4"
[313] "subtype2" "subtype3" "subtype4" "subtype3" "subtype2" "subtype3"
[319] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
[325] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[331] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[337] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[343] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[349] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[355] "subtype4" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[361] "subtype2" "subtype1" "subtype2" "subtype3" "subtype4" "subtype2"
[367] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[373] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[379] "subtype2" "subtype3" "subtype2" "subtype4" "subtype4" "subtype2"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[391] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[397] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[403] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype2" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype4"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [37] "subtype4" "subtype4" "subtype2" "subtype2" "subtype3" "subtype1"
 [43] "subtype3" "subtype2" "subtype2" "subtype3" "subtype4" "subtype1"
 [49] "subtype4" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype4" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype4"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
 [79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype4" "subtype2" "subtype1" "subtype2" "subtype4" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype2" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[109] "subtype4" "subtype4" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype1" "subtype4" "subtype3"
[127] "subtype4" "subtype4" "subtype4" "subtype2" "subtype4" "subtype2"
[133] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[139] "subtype2" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype4" "subtype4" "subtype4" "subtype3" "subtype2"
[151] "subtype2" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
[157] "subtype1" "subtype2" "subtype4" "subtype2" "subtype2" "subtype4"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[199] "subtype4" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[205] "subtype2" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[223] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[247] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[253] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[259] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[277] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[283] "subtype2" "subtype2" "subtype1" "subtype4" "subtype3" "subtype1"
[289] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[295] "subtype3" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[301] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype2"
[307] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype4"
[313] "subtype2" "subtype3" "subtype4" "subtype3" "subtype2" "subtype3"
[319] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
[325] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[331] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[337] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[343] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[349] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[355] "subtype4" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[361] "subtype2" "subtype1" "subtype2" "subtype3" "subtype4" "subtype2"
[367] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[373] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[379] "subtype2" "subtype3" "subtype2" "subtype4" "subtype4" "subtype2"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[391] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[397] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[403] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype2" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype4" "subtype3" "subtype2" "subtype4" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype4"
 [31] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [37] "subtype4" "subtype4" "subtype2" "subtype2" "subtype3" "subtype1"
 [43] "subtype3" "subtype2" "subtype2" "subtype3" "subtype4" "subtype1"
 [49] "subtype4" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype4" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype4"
 [73] "subtype2" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
 [79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype4" "subtype2" "subtype1" "subtype2" "subtype4" "subtype3"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [97] "subtype2" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[109] "subtype4" "subtype4" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype1" "subtype4" "subtype3"
[127] "subtype4" "subtype4" "subtype4" "subtype2" "subtype4" "subtype2"
[133] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[139] "subtype2" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype4" "subtype4" "subtype4" "subtype3" "subtype2"
[151] "subtype2" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
[157] "subtype1" "subtype2" "subtype4" "subtype2" "subtype2" "subtype4"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[199] "subtype4" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[205] "subtype2" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[223] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[247] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[253] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[259] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[277] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[283] "subtype2" "subtype2" "subtype1" "subtype4" "subtype3" "subtype1"
[289] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[295] "subtype3" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[301] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype2"
[307] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype4"
[313] "subtype2" "subtype3" "subtype4" "subtype3" "subtype2" "subtype3"
[319] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
[325] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[331] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[337] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[343] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[349] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[355] "subtype4" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[361] "subtype2" "subtype1" "subtype2" "subtype3" "subtype4" "subtype2"
[367] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[373] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[379] "subtype2" "subtype3" "subtype2" "subtype4" "subtype4" "subtype2"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[391] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[397] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[403] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
D6V2, continuous
D6V3, binary
          cls
clus         0   1
  subtype1  63  18
  subtype2 120  49
  subtype3  78  26
  subtype4  46  13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   63   18
  subtype2  120   49
  subtype3   78   26
  subtype4   46   13
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       63      120       78       46
  MALE         18       49       26       13
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              0                                            68
  subtype2              3                                           133
  subtype3              3                                            41
  subtype4              1                                            44
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     12
  subtype2                                                                      4
  subtype3                                                                     60
  subtype4                                                                     10
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                  29
  subtype3                                                                   0
  subtype4                                                                   4
D6V4, multiclass
D6V5, binary
          cls
clus         0   1
  subtype1   2  79
  subtype2  10 159
  subtype3   1 103
  subtype4   0  59
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   79
  subtype2   10  159
  subtype3    1  103
  subtype4    0   59
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         2       10        1        0
  YES       79      159      103       59
D6V6, binary
          cls
clus         0   1
  subtype1  72   1
  subtype2 146   7
  subtype3  90   4
  subtype4  46   4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   72    1
  subtype2  146    7
  subtype3   90    4
  subtype4   46    4
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        72      146       90       46
  YES        1        7        4        4
          vv
clus       M0 M1 MX
  subtype1 47  2 32
  subtype2 99  3 67
  subtype3 42  3 58
  subtype4 43  0 16
D6V7, multiclass
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           20                       0   59                   0
  subtype2           66                      12   81                   1
  subtype3           11                       1   86                   0
  subtype4           13                       0   44                   0
D6V8, multiclass
          vv
clus       N0 N1 N1A N1B NX
  subtype1 36  9  17  13  6
  subtype2 53 31  41  32 12
  subtype3 73  4   3   6 18
  subtype4 29  4  16   8  2
D6V9, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1  67   6   1   4
  subtype2 127  19   1  11
  subtype3  84   6   0   7
  subtype4  47   4   0   4
D6V10, multiclass
D6V11, continuous
D6V12, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      45       10        16        0         8         1
  subtype2      93        9        44        1        20         2
  subtype3      55       25        16        1         3         2
  subtype4      39        2        14        0         4         0
D6V13, multiclass
D6V14, binary
          cls
clus         0   1
  subtype1  43  36
  subtype2  62 104
  subtype3  43  59
  subtype4  29  28
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   43   36
  subtype2   62  104
  subtype3   43   59
  subtype4   29   28
            clus
vv           subtype1 subtype2 subtype3 subtype4
  MULTIFOCAL       43       62       43       29
  UNIFOCAL         36      104       59       28
D6V15, continuous

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1 102   3
  subtype2 131   0
  subtype3 125   7
subtype1 subtype2 subtype3 
     105      131      132 
subtype1 subtype2 subtype3 
       3        0        7 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z9 TCGA-BJ-A0ZA TCGA-BJ-A0ZC 
       15.75        11.70         7.63         8.25         8.68         6.02 
TCGA-BJ-A0ZE TCGA-BJ-A0ZF TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 
        7.79         6.90         7.56         2.79         0.43         7.73 
TCGA-BJ-A192 TCGA-BJ-A28V TCGA-BJ-A45C TCGA-CE-A3ME TCGA-CE-A484 TCGA-DE-A2OL 
        8.09         5.10         5.72         0.23         0.39         5.29 
TCGA-DJ-A13M TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL 
        9.01         3.02         8.71        14.93         6.97         6.97 
TCGA-DJ-A2PP TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3US 
        5.00         8.12         6.77        10.85         5.49        20.71 
TCGA-DJ-A3UT TCGA-DJ-A3VG TCGA-DJ-A3VM TCGA-DO-A1JZ TCGA-E3-A3DZ TCGA-E3-A3E5 
       15.42         8.32        15.81        40.27        12.07        14.04 
TCGA-EL-A3CX TCGA-EL-A3CZ TCGA-EL-A3GO TCGA-EL-A3GS TCGA-EL-A3GW TCGA-EL-A3H1 
       72.79        52.77        39.32        53.13        37.25        49.32 
TCGA-EL-A3H2 TCGA-EL-A3T2 TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EM-A1CW TCGA-EM-A1YA 
       33.47        32.48        78.97        48.16         8.05         7.13 
TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L 
        9.34        46.72        21.37         6.81         6.64         4.54 
TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CM 
        6.87         6.31        11.44         8.19         6.87        11.74 
TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT 
       11.31         6.02         2.96         6.54         7.17        10.49 
TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AJ 
       11.61         7.20        11.41         7.36         6.61        13.05 
TCGA-EM-A3AP TCGA-EM-A3O8 TCGA-EM-A3OB TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2MX 
        5.29         0.49         2.33         0.33         0.49        54.02 
TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A3BW 
        6.51        38.86         0.30         1.94        83.34         2.37 
TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P TCGA-FE-A236 TCGA-FE-A239 TCGA-FE-A3PD 
        0.30       112.57         3.22        66.77        33.63        62.89 
TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R9 
        0.89         1.25         1.64         0.99         0.59         2.17 
TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 
        0.76         0.95         4.77         4.87         9.63        12.89 
TCGA-J8-A3O1 TCGA-KS-A41I TCGA-KS-A41L 
       13.64        15.95        86.70 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0ZH TCGA-BJ-A0ZJ TCGA-BJ-A28R TCGA-BJ-A28Z 
        5.98         6.48         0.72         5.00         4.87         1.22 
TCGA-BJ-A290 TCGA-BJ-A3PU TCGA-CE-A13K TCGA-CE-A482 TCGA-CE-A483 TCGA-DE-A0XZ 
       20.58        10.03         0.53         0.07         0.10        13.22 
TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13U 
        7.59        31.30         9.40       138.05        24.92        12.92 
TCGA-DJ-A13X TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR 
        7.99         4.96         8.98         7.96        20.48        10.45 
TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q7 
       10.26         7.69         5.03         9.44         9.90         9.57 
TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UR TCGA-DJ-A3V2 
        9.99         8.25        12.49        15.78        23.70         7.40 
TCGA-DJ-A3V3 TCGA-DJ-A3V7 TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VE TCGA-DO-A1K0 
       17.75         9.83        11.93        11.21         4.41         3.06 
TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E8-A417 
       31.07        50.76        40.18        46.72        20.88         0.26 
TCGA-E8-A418 TCGA-E8-A438 TCGA-EL-A3GV TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 
        1.48         6.90        39.81        88.77        27.85        38.66 
TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3N2 TCGA-EL-A3N3 TCGA-EL-A3T1 TCGA-EL-A3T3 
      128.61        93.44        12.16       147.42       129.57       116.91 
TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZQ 
       98.20        41.29        95.38        82.82        77.33        45.53 
TCGA-EL-A3ZT TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A22I TCGA-EM-A22M TCGA-EM-A22O 
       44.61        19.07         5.03         2.66         3.48         6.21 
TCGA-EM-A2CS TCGA-EM-A2OZ TCGA-EM-A3AK TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ 
        9.34         9.34         9.27        11.21        11.05         8.61 
TCGA-EM-A3FJ TCGA-EM-A3SU TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25N 
       16.64         8.78        35.77        29.69        19.36         2.47 
TCGA-ET-A25O TCGA-ET-A25R TCGA-ET-A2MY TCGA-ET-A2MZ TCGA-ET-A2N1 TCGA-ET-A2N4 
        4.44        20.42        19.04        12.26        14.76         1.41 
TCGA-ET-A39K TCGA-ET-A39M TCGA-ET-A39O TCGA-ET-A39R TCGA-ET-A39T TCGA-ET-A3BO 
       67.66        74.50        43.04        46.45         7.79         5.82 
TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DW 
        4.18         2.43         5.52         4.50        68.88        24.69 
TCGA-ET-A40R TCGA-ET-A40S TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 
        4.80         5.00        47.41        12.30        44.25        24.69 
TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A23A TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FK-A3SB 
       43.82       102.90        62.70        94.42        61.41         4.08 
TCGA-FK-A3SG TCGA-FY-A3BL TCGA-FY-A3ON TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A40N 
        0.92         1.15         1.51         4.64         9.14         0.89 
TCGA-H2-A3RI TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB TCGA-IM-A3U3 TCGA-IM-A420 
        2.96         2.20         2.89        35.18         3.25         2.96 
TCGA-J8-A3NZ TCGA-J8-A3YE TCGA-J8-A3YH TCGA-KS-A41F TCGA-KS-A41J 
        2.24        27.81         5.72       120.99        15.68 

$subtype3
TCGA-BJ-A0ZB TCGA-BJ-A28T TCGA-BJ-A28X TCGA-BJ-A3PR TCGA-BJ-A3PT TCGA-CE-A27D 
        4.01         2.76        17.49         8.02        12.07         0.10 
TCGA-CE-A3MD TCGA-CE-A481 TCGA-DJ-A13O TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF 
        0.20         0.10         7.07        10.98        99.98        18.05 
TCGA-DJ-A1QH TCGA-DJ-A1QM TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PS 
        7.99         0.99         1.02         5.95         9.99         1.94 
TCGA-DJ-A2PT TCGA-DJ-A2PV TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 
        9.60         7.96         8.78         8.42         9.34         9.21 
TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A3UM TCGA-DJ-A3UQ 
        8.61         7.07        10.36        12.43        17.23         9.11 
TCGA-DJ-A3UU TCGA-DJ-A3UV TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY TCGA-DJ-A3UZ 
       17.69        19.40        43.00        11.34        13.32        12.76 
TCGA-DJ-A3V0 TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V6 TCGA-DJ-A3V8 TCGA-DJ-A3V9 
       25.02        14.56         7.86        14.93         8.52         7.13 
TCGA-DJ-A3VD TCGA-DJ-A3VF TCGA-DJ-A3VJ TCGA-DO-A2HM TCGA-E8-A242 TCGA-E8-A2EA 
       11.51         7.73        17.36         2.30         1.12         0.36 
TCGA-E8-A3X7 TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A432 
        1.48         0.33         0.23         0.16         0.72         0.53 
TCGA-E8-A433 TCGA-E8-A434 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM TCGA-EL-A3CN 
        0.16         0.23         0.39         0.39        26.73       130.03 
TCGA-EL-A3CO TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CU TCGA-EL-A3CV 
       97.74       120.20         7.66        45.53       145.38        37.94 
TCGA-EL-A3D1 TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GU TCGA-EL-A3H5 
       74.27         1.41        30.18       102.84       124.04        52.73 
TCGA-EL-A3H7 TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3T0 TCGA-EL-A3T9 TCGA-EL-A3TA 
      126.97        17.49        52.47       130.72         5.72        54.25 
TCGA-EL-A3ZK TCGA-EL-A3ZL TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EM-A1CU TCGA-EM-A1YD 
       31.46        50.30        43.50         7.04         7.04        39.75 
TCGA-EM-A22P TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P3 
        5.72         5.79         2.89         6.28         6.38         0.33 
TCGA-EM-A3AR TCGA-EM-A3FQ TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A2N0 TCGA-ET-A39J 
        6.81         4.93        14.79        12.33         4.37        11.90 
TCGA-ET-A39P TCGA-ET-A39S TCGA-ET-A3BN TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV 
       13.35         0.66         1.68        24.72         1.28         1.84 
TCGA-ET-A3DP TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A40Q 
       50.50        44.91         2.14         4.77         4.54         7.17 
TCGA-ET-A40T TCGA-FE-A22Z TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A3PB TCGA-FK-A3S3 
        2.10        51.45        75.35        39.95        85.12        46.06 
TCGA-FK-A3SE TCGA-FK-A3SH TCGA-FY-A3I4 TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A3YR 
       21.99        48.10         1.12         0.76         0.03         6.84 
TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A40M TCGA-GE-A2C6 TCGA-H2-A26U TCGA-IM-A3ED 
        4.14         6.54         4.54         6.77         3.48        30.87 
TCGA-IM-A3U2 TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A42S 
        2.63         1.35        31.82        24.69        22.29         2.47 

subtype1 subtype2 subtype3 
    0.23     0.07     0.03 
subtype1 subtype2 subtype3 
  112.57   147.42   145.38 
subtype1 subtype2 subtype3 
    7.73    10.45     8.47 
[1] "0.2 - 112.6 (7.7)"  "0.1 - 147.4 (10.4)" "0.0 - 145.4 (8.5)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[253] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[271] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[289] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[295] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[313] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[319] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[325] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[331] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[361] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[367] "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[253] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[271] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[289] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[295] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[313] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[319] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[325] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[331] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[361] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[367] "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[253] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[271] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[289] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[295] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[313] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[319] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[325] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[331] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[361] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[367] "subtype2" "subtype1"
D7V2, continuous
D7V3, binary
          cls
clus         0   1
  subtype1  78  27
  subtype2  98  36
  subtype3 103  31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   78   27
  subtype2   98   36
  subtype3  103   31
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       78       98      103
  MALE         27       36       31
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              3                                            40
  subtype2              1                                           111
  subtype3              2                                           103
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     61
  subtype2                                                                     12
  subtype3                                                                      9
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                  10
  subtype3                                                                  20
D7V4, multiclass
D7V5, binary
          cls
clus         0   1
  subtype1   3 102
  subtype2   8 126
  subtype3   3 131
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3  102
  subtype2    8  126
  subtype3    3  131
     clus
vv    subtype1 subtype2 subtype3
  NO         3        8        3
  YES      102      126      131
D7V6, binary
          cls
clus         0   1
  subtype1  90   4
  subtype2 112   6
  subtype3 116   6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   90    4
  subtype2  112    6
  subtype3  116    6
     clus
vv    subtype1 subtype2 subtype3
  NO        90      112      116
  YES        4        6        6
          vv
clus       M0 M1 MX
  subtype1 42  2 60
  subtype2 69  3 62
  subtype3 84  1 49
D7V7, multiclass
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           10                       0   89                   0
  subtype2           39                       2   86                   0
  subtype3           47                      10   73                   1
D7V8, multiclass
          vv
clus       N0 N1 N1A N1B NX
  subtype1 72  5   4   6 18
  subtype2 53 17  39  15 10
  subtype3 51 16  32  28  7
D7V9, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1  83   7   0   8
  subtype2 108   7   1   8
  subtype3 102  16   1   8
D7V10, multiclass
D7V11, continuous
D7V12, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      59       23        16        0         3         2
  subtype2      81       14        28        0        10         1
  subtype3      70        6        39        1        16         1
D7V13, multiclass
D7V14, binary
          cls
clus        0  1
  subtype1 45 58
  subtype2 59 69
  subtype3 61 72
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   45   58
  subtype2   59   69
  subtype3   61   72
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       45       59       61
  UNIFOCAL         58       69       72
D7V15, continuous

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1  89   3
  subtype2 139   7
  subtype3 130   0
subtype1 subtype2 subtype3 
      92      146      130 
subtype1 subtype2 subtype3 
       3        7        0 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZC TCGA-BJ-A0ZE TCGA-BJ-A0ZF 
       15.75        11.70         7.63         6.02         7.79         6.90 
TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28V TCGA-BJ-A45C 
        2.79         0.43         7.73         8.09         5.10         5.72 
TCGA-CE-A484 TCGA-DE-A2OL TCGA-DJ-A13M TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13W 
        0.39         5.29         9.01         3.02         8.71        14.93 
TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A2PP TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB 
        6.97         6.97         5.00         8.12         6.77        10.85 
TCGA-DJ-A3UP TCGA-DJ-A3US TCGA-DJ-A3UT TCGA-DJ-A3VG TCGA-DJ-A3VM TCGA-E3-A3DZ 
        5.49        20.71        15.42         8.32        15.81        12.07 
TCGA-EL-A3CX TCGA-EL-A3GO TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3T2 
       72.79        39.32        37.25        49.32        33.47        32.48 
TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC 
       78.97        48.16         8.05         7.13         9.34        46.72 
TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q 
       21.37         6.81         6.64         4.54         6.87         6.31 
TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CM TCGA-EM-A2CN TCGA-EM-A2CO 
       11.44         8.19         6.87        11.74        11.31         6.02 
TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT TCGA-EM-A2OV TCGA-EM-A2OW 
        2.96         6.54         7.17        10.49        11.61         7.20 
TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AP TCGA-EM-A3O8 TCGA-EM-A3OB 
       11.41         7.36         6.61         5.29         0.49         2.33 
TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N1 TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I 
        0.33         0.49        14.76         6.51        38.86         0.30 
TCGA-ET-A39N TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P TCGA-FE-A239 TCGA-FK-A3SD 
       83.34         0.30       112.57         3.22        33.63         0.89 
TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R9 TCGA-FY-A3W9 
        1.25         1.64         0.99         0.59         2.17         0.76 
TCGA-FY-A3WA TCGA-FY-A40M TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 
        0.95         4.54         4.77         4.87         9.63        12.89 
TCGA-KS-A41I TCGA-KS-A41L 
       15.95        86.70 

$subtype2
TCGA-BJ-A0ZB TCGA-BJ-A0ZG TCGA-BJ-A28T TCGA-BJ-A28X TCGA-BJ-A28Z TCGA-BJ-A3PR 
        4.01         7.56         2.76        17.49         1.22         8.02 
TCGA-BJ-A3PT TCGA-BJ-A3PU TCGA-CE-A27D TCGA-CE-A3MD TCGA-CE-A481 TCGA-DJ-A13O 
       12.07        10.03         0.10         0.20         0.10         7.07 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QH TCGA-DJ-A1QM TCGA-DJ-A1QO TCGA-DJ-A1QQ 
       10.98        99.98         7.99         0.99         1.02         5.95 
TCGA-DJ-A2PN TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PV TCGA-DJ-A2PY TCGA-DJ-A2PZ 
        9.99         1.94         9.60         7.96         8.78         8.42 
TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QA 
        9.34         9.21         8.61         7.07        10.36        12.43 
TCGA-DJ-A3UM TCGA-DJ-A3UQ TCGA-DJ-A3UU TCGA-DJ-A3UV TCGA-DJ-A3UW TCGA-DJ-A3UX 
       17.23         9.11        17.69        19.40        43.00        11.34 
TCGA-DJ-A3UY TCGA-DJ-A3UZ TCGA-DJ-A3V0 TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V6 
       13.32        12.76        25.02        14.56         7.86        14.93 
TCGA-DJ-A3V8 TCGA-DJ-A3V9 TCGA-DJ-A3VB TCGA-DJ-A3VD TCGA-DJ-A3VF TCGA-DJ-A3VJ 
        8.52         7.13        11.21        11.51         7.73        17.36 
TCGA-DO-A2HM TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 TCGA-E8-A413 TCGA-E8-A414 
        2.30         1.12         0.36         1.48         0.33         0.23 
TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A434 TCGA-E8-A44K 
        0.16         0.72         0.53         0.16         0.23         0.39 
TCGA-E8-A44M TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CO TCGA-EL-A3CP TCGA-EL-A3CR 
        0.39        26.73       130.03        97.74       120.20         7.66 
TCGA-EL-A3CS TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3D1 TCGA-EL-A3GP TCGA-EL-A3GQ 
       45.53       145.38        37.94        74.27         1.41        30.18 
TCGA-EL-A3GR TCGA-EL-A3GU TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3MY TCGA-EL-A3MZ 
      102.84       124.04        52.73       126.97        17.49        52.47 
TCGA-EL-A3N3 TCGA-EL-A3T0 TCGA-EL-A3T1 TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3ZK 
      147.42       130.72       129.57         5.72        54.25        31.46 
TCGA-EL-A3ZL TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EM-A1CU TCGA-EM-A1YD TCGA-EM-A22I 
       50.30        43.50         7.04         7.04        39.75         2.66 
TCGA-EM-A22M TCGA-EM-A22P TCGA-EM-A2CU TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P3 
        3.48         5.72         5.79         6.28         6.38         0.33 
TCGA-EM-A3AR TCGA-EM-A3SU TCGA-ET-A25G TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25R 
        6.81         8.78        35.77        14.79        12.33        20.42 
TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A39M TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39S 
       19.04         4.37        74.50        43.04        13.35         0.66 
TCGA-ET-A3BN TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3DO TCGA-ET-A3DQ 
        1.68        24.72         1.28         1.84        68.88        44.91 
TCGA-ET-A3DR TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A40Q TCGA-ET-A40T TCGA-FE-A22Z 
        2.14         4.77         4.54         7.17         2.10        51.45 
TCGA-FE-A234 TCGA-FE-A237 TCGA-FE-A3PB TCGA-FK-A3SB TCGA-FK-A3SE TCGA-FK-A3SH 
       43.82        75.35        85.12         4.08        21.99        48.10 
TCGA-FY-A3I4 TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A3R8 TCGA-FY-A3YR TCGA-FY-A40K 
        1.12         0.76         0.03         4.64         6.84         4.14 
TCGA-FY-A40L TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A421 TCGA-IM-A3EB TCGA-IM-A3U2 
        6.54         6.77         3.48         2.20        35.18         2.63 
TCGA-IM-A3U3 TCGA-IM-A420 TCGA-J8-A3NZ TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YF 
        3.25         2.96         2.24         1.35        31.82        24.69 
TCGA-J8-A3YG TCGA-J8-A42S 
       22.29         2.47 

$subtype3
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZA TCGA-BJ-A0ZH TCGA-BJ-A0ZJ 
        5.98         6.48         8.25         8.68         0.72         5.00 
TCGA-BJ-A28R TCGA-BJ-A290 TCGA-CE-A13K TCGA-CE-A3ME TCGA-CE-A482 TCGA-CE-A483 
        4.87        20.58         0.53         0.23         0.07         0.10 
TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN TCGA-DJ-A13P TCGA-DJ-A13T 
       13.22         7.59        31.30         9.40       138.05        24.92 
TCGA-DJ-A13U TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A2PO 
       12.92         7.99        18.05         4.96         8.98         7.96 
TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2Q4 
       20.48        10.45        10.26         7.69         5.03         9.44 
TCGA-DJ-A2Q5 TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO 
        9.90         9.57         9.99         8.25        12.49        15.78 
TCGA-DJ-A3UR TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V7 TCGA-DJ-A3VA TCGA-DJ-A3VE 
       23.70         7.40        17.75         9.83        11.93         4.41 
TCGA-DO-A1JZ TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E2 
       40.27         3.06        31.07        50.76        40.18        46.72 
TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A438 TCGA-EL-A3CZ 
       20.88        14.04         0.26         1.48         6.90        52.77 
TCGA-EL-A3GS TCGA-EL-A3GV TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H8 
       53.13        39.81        88.77        27.85        38.66       128.61 
TCGA-EL-A3MW TCGA-EL-A3N2 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 
       93.44        12.16       116.91        98.20        41.29        95.38 
TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EM-A1CS TCGA-EM-A1CT 
       82.82        77.33        45.53        44.61        19.07         5.03 
TCGA-EM-A22O TCGA-EM-A2CS TCGA-EM-A2OX TCGA-EM-A2OZ TCGA-EM-A3AJ TCGA-EM-A3AK 
        6.21         9.34         2.89         9.34        13.05         9.27 
TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3FQ TCGA-ET-A25J 
       11.21        11.05         8.61        16.64         4.93        29.69 
TCGA-ET-A25K TCGA-ET-A25N TCGA-ET-A25O TCGA-ET-A2MX TCGA-ET-A2MZ TCGA-ET-A2N4 
       19.36         2.47         4.44        54.02        12.26         1.41 
TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39L TCGA-ET-A39R TCGA-ET-A39T TCGA-ET-A3BO 
       11.90        67.66         1.94        46.45         7.79         5.82 
TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DP 
        4.18         2.43         5.52         2.37         4.50        50.50 
TCGA-ET-A3DW TCGA-ET-A40R TCGA-ET-A40S TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 
       24.69         4.80         5.00        47.41        12.30        44.25 
TCGA-FE-A233 TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A238 TCGA-FE-A23A TCGA-FE-A3PA 
       24.69       102.90        66.77        39.95        62.70        94.42 
TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SG TCGA-FY-A3BL TCGA-FY-A3ON 
       61.41        62.89        46.06         0.92         1.15         1.51 
TCGA-FY-A3RA TCGA-FY-A40N TCGA-H2-A3RI TCGA-H2-A422 TCGA-IM-A3ED TCGA-J8-A3O1 
        9.14         0.89         2.96         2.89        30.87        13.64 
TCGA-J8-A3YE TCGA-J8-A3YH TCGA-KS-A41F TCGA-KS-A41J 
       27.81         5.72       120.99        15.68 

subtype1 subtype2 subtype3 
    0.30     0.03     0.07 
subtype1 subtype2 subtype3 
  112.57   147.42   138.05 
subtype1 subtype2 subtype3 
   7.185    8.470   11.915 
[1] "0.3 - 112.6 (7.2)"  "0.0 - 147.4 (8.5)"  "0.1 - 138.1 (11.9)"
  [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[115] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[253] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[259] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[277] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[283] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[289] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[295] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[307] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[313] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[319] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[325] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[331] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[343] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[349] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[361] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[367] "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[115] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[253] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[259] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[277] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[283] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[289] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[295] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[307] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[313] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[319] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[325] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[331] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[343] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[349] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[361] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[367] "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[115] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[193] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[253] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[259] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[277] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[283] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[289] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[295] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[307] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[313] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[319] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[325] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[331] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[343] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[349] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[361] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[367] "subtype3" "subtype1"
D8V2, continuous
D8V3, binary
          cls
clus         0   1
  subtype1  70  22
  subtype2 113  36
  subtype3  96  36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   70   22
  subtype2  113   36
  subtype3   96   36
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       70      113       96
  MALE         22       36       36
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              3                                            32
  subtype2              1                                           114
  subtype3              2                                           108
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     57
  subtype2                                                                      9
  subtype3                                                                     16
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   0
  subtype2                                                                  25
  subtype3                                                                   6
D8V4, multiclass
D8V5, binary
          cls
clus         0   1
  subtype1   1  91
  subtype2   3 146
  subtype3  10 122
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   91
  subtype2    3  146
  subtype3   10  122
     clus
vv    subtype1 subtype2 subtype3
  NO         1        3       10
  YES       91      146      122
D8V6, binary
          cls
clus         0   1
  subtype1  79   4
  subtype2 128   7
  subtype3 111   5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   79    4
  subtype2  128    7
  subtype3  111    5
     clus
vv    subtype1 subtype2 subtype3
  NO        79      128      111
  YES        4        7        5
          vv
clus       M0 M1 MX
  subtype1 36  2 53
  subtype2 92  1 56
  subtype3 67  3 62
D8V7, multiclass
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1            8                       0   79                   0
  subtype2           56                      10   78                   1
  subtype3           32                       2   91                   0
D8V8, multiclass
          vv
clus       N0 N1 N1A N1B NX
  subtype1 67  3   2   4 16
  subtype2 54 18  40  26 11
  subtype3 55 17  33  19  8
D8V9, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1  77   3   0   6
  subtype2 112  17   1  10
  subtype3 104  10   1   8
D8V10, multiclass
D8V11, continuous
D8V12, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      49       21        16        0         2         2
  subtype2      77        6        48        1        15         1
  subtype3      84       16        19        0        12         1
D8V13, multiclass
D8V14, binary
          cls
clus        0  1
  subtype1 40 51
  subtype2 63 84
  subtype3 62 64
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   40   51
  subtype2   63   84
  subtype3   62   64
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       40       63       62
  UNIFOCAL         51       84       64
D8V15, continuous

Clustering(9) Variable = MIRSEQ_MATURE_CNMF
D9V1, survival
          sevent
clus2        0   1
  subtype1 100   3
  subtype2 140   0
  subtype3 118   7
subtype1 subtype2 subtype3 
     103      140      125 
subtype1 subtype2 subtype3 
       3        0        7 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       15.75        11.70         7.63         8.68         6.02         7.79 
TCGA-BJ-A0ZF TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 
        6.90         7.56         2.79         0.43         7.73         8.09 
TCGA-BJ-A28V TCGA-BJ-A45C TCGA-CE-A484 TCGA-DE-A2OL TCGA-DJ-A13M TCGA-DJ-A13R 
        5.10         5.72         0.39         5.29         9.01         3.02 
TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A2PP TCGA-DJ-A2Q0 
        8.71        14.93         6.97         6.97         5.00         8.12 
TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3US TCGA-DJ-A3UT TCGA-DJ-A3VG 
        6.77        10.85         5.49        20.71        15.42         8.32 
TCGA-DJ-A3VM TCGA-DO-A1JZ TCGA-E3-A3DZ TCGA-E3-A3E0 TCGA-E3-A3E5 TCGA-EL-A3CX 
       15.81        40.27        12.07        50.76        14.04        72.79 
TCGA-EL-A3CZ TCGA-EL-A3GO TCGA-EL-A3GS TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 
       52.77        39.32        53.13        37.25        49.32        33.47 
TCGA-EL-A3T2 TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB 
       32.48        78.97        48.16         8.05         7.13         9.34 
TCGA-EM-A1YC TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N 
       46.72        21.37         6.81         6.64         4.54         6.87 
TCGA-EM-A22O TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CM 
        6.21         6.31        11.44         8.19         6.87        11.74 
TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT 
       11.31         6.02         2.96         6.54         7.17        10.49 
TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AJ 
       11.61         7.20        11.41         7.36         6.61        13.05 
TCGA-EM-A3AP TCGA-EM-A3O8 TCGA-EM-A3OB TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N1 
        5.29         0.49         2.33         0.33         0.49        14.76 
TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A3BW 
        6.51        38.86         0.30         1.94        83.34         2.37 
TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P TCGA-FE-A239 TCGA-FK-A3SD TCGA-FY-A2QD 
        0.30       112.57         3.22        33.63         0.89         1.25 
TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA 
        1.64         0.99         0.59         2.17         0.76         0.95 
TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A3O1 TCGA-KS-A41I 
        4.77         4.87         9.63        12.89        13.64        15.95 
TCGA-KS-A41L 
       86.70 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZH TCGA-BJ-A0ZJ TCGA-BJ-A28R 
        5.98         6.48         8.25         0.72         5.00         4.87 
TCGA-BJ-A28Z TCGA-BJ-A290 TCGA-BJ-A3PU TCGA-CE-A13K TCGA-CE-A3ME TCGA-CE-A482 
        1.22        20.58        10.03         0.53         0.23         0.07 
TCGA-CE-A483 TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN TCGA-DJ-A13P 
        0.10        13.22         7.59        31.30         9.40       138.05 
TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A13X TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A1QO 
       24.92        12.92         7.99         4.96         8.98         1.02 
TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW 
        9.99         7.96        20.48        10.45        10.26         7.69 
TCGA-DJ-A2PX TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UK 
        5.03         9.44         9.90         9.57         9.99         8.25 
TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UR TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V7 
       12.49        15.78        23.70         7.40        17.75         9.83 
TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VE TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E2 
       11.93        11.21         4.41         3.06        31.07        46.72 
TCGA-E3-A3E3 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A438 TCGA-EL-A3CN TCGA-EL-A3CP 
       20.88         0.26         1.48         6.90       130.03       120.20 
TCGA-EL-A3GV TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H8 TCGA-EL-A3MW 
       39.81        88.77        27.85        38.66       128.61        93.44 
TCGA-EL-A3N2 TCGA-EL-A3T1 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 
       12.16       129.57       116.91        98.20        41.29        95.38 
TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EM-A1CS TCGA-EM-A1CT 
       82.82        77.33        45.53        44.61        19.07         5.03 
TCGA-EM-A22I TCGA-EM-A22M TCGA-EM-A2CS TCGA-EM-A2OZ TCGA-EM-A3AK TCGA-EM-A3AN 
        2.66         3.48         9.34         9.34         9.27        11.21 
TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3SU TCGA-ET-A25G TCGA-ET-A25J 
       11.05         8.61        16.64         8.78        35.77        29.69 
TCGA-ET-A25K TCGA-ET-A25N TCGA-ET-A25O TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY 
       19.36         2.47         4.44        20.42        54.02        19.04 
TCGA-ET-A2MZ TCGA-ET-A2N4 TCGA-ET-A39K TCGA-ET-A39M TCGA-ET-A39O TCGA-ET-A39R 
       12.26         1.41        67.66        74.50        43.04        46.45 
TCGA-ET-A39T TCGA-ET-A3BO TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BU 
        7.79         5.82         4.18         2.43         5.52         1.28 
TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DP TCGA-ET-A3DT TCGA-ET-A3DW TCGA-ET-A40R 
        4.50        68.88        50.50         4.77        24.69         4.80 
TCGA-ET-A40S TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 
        5.00        47.41        12.30        44.25        24.69        43.82 
TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A238 TCGA-FE-A23A TCGA-FE-A3PA TCGA-FE-A3PC 
      102.90        66.77        39.95        62.70        94.42        61.41 
TCGA-FE-A3PD TCGA-FK-A3SB TCGA-FK-A3SG TCGA-FY-A3BL TCGA-FY-A3ON TCGA-FY-A3R8 
       62.89         4.08         0.92         1.15         1.51         4.64 
TCGA-FY-A3RA TCGA-FY-A40N TCGA-H2-A3RI TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB 
        9.14         0.89         2.96         2.20         2.89        35.18 
TCGA-IM-A3ED TCGA-IM-A3U3 TCGA-IM-A420 TCGA-J8-A3NZ TCGA-J8-A3YE TCGA-J8-A3YH 
       30.87         3.25         2.96         2.24        27.81         5.72 
TCGA-KS-A41F TCGA-KS-A41J 
      120.99        15.68 

$subtype3
TCGA-BJ-A0ZB TCGA-BJ-A28T TCGA-BJ-A28X TCGA-BJ-A3PR TCGA-BJ-A3PT TCGA-CE-A27D 
        4.01         2.76        17.49         8.02        12.07         0.10 
TCGA-CE-A3MD TCGA-CE-A481 TCGA-DJ-A13O TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF 
        0.20         0.10         7.07        10.98        99.98        18.05 
TCGA-DJ-A1QH TCGA-DJ-A1QM TCGA-DJ-A1QQ TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PV 
        7.99         0.99         5.95         1.94         9.60         7.96 
TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 
        8.78         8.42         9.34         9.21         8.61         7.07 
TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A3UM TCGA-DJ-A3UQ TCGA-DJ-A3UU TCGA-DJ-A3UV 
       10.36        12.43        17.23         9.11        17.69        19.40 
TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY TCGA-DJ-A3UZ TCGA-DJ-A3V0 TCGA-DJ-A3V4 
       43.00        11.34        13.32        12.76        25.02        14.56 
TCGA-DJ-A3V5 TCGA-DJ-A3V6 TCGA-DJ-A3V8 TCGA-DJ-A3V9 TCGA-DJ-A3VD TCGA-DJ-A3VF 
        7.86        14.93         8.52         7.13        11.51         7.73 
TCGA-DJ-A3VJ TCGA-DO-A2HM TCGA-E3-A3E1 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 
       17.36         2.30        40.18         1.12         0.36         1.48 
TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A432 TCGA-E8-A433 
        0.33         0.23         0.16         0.72         0.53         0.16 
TCGA-E8-A434 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM TCGA-EL-A3CO TCGA-EL-A3CR 
        0.23         0.39         0.39        26.73        97.74         7.66 
TCGA-EL-A3CS TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3D1 TCGA-EL-A3GP TCGA-EL-A3GQ 
       45.53       145.38        37.94        74.27         1.41        30.18 
TCGA-EL-A3GR TCGA-EL-A3GU TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3MY TCGA-EL-A3MZ 
      102.84       124.04        52.73       126.97        17.49        52.47 
TCGA-EL-A3N3 TCGA-EL-A3T0 TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3ZK TCGA-EL-A3ZL 
      147.42       130.72         5.72        54.25        31.46        50.30 
TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EM-A1CU TCGA-EM-A1YD TCGA-EM-A22P TCGA-EM-A2CU 
       43.50         7.04         7.04        39.75         5.72         5.79 
TCGA-EM-A2OX TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P3 TCGA-EM-A3AR TCGA-EM-A3FQ 
        2.89         6.28         6.38         0.33         6.81         4.93 
TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A2N0 TCGA-ET-A39J TCGA-ET-A39P TCGA-ET-A39S 
       14.79        12.33         4.37        11.90        13.35         0.66 
TCGA-ET-A3BN TCGA-ET-A3BT TCGA-ET-A3BV TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DU 
        1.68        24.72         1.84        44.91         2.14         4.54 
TCGA-ET-A40Q TCGA-ET-A40T TCGA-FE-A22Z TCGA-FE-A237 TCGA-FE-A3PB TCGA-FK-A3S3 
        7.17         2.10        51.45        75.35        85.12        46.06 
TCGA-FK-A3SE TCGA-FK-A3SH TCGA-FY-A3I4 TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A3YR 
       21.99        48.10         1.12         0.76         0.03         6.84 
TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A40M TCGA-GE-A2C6 TCGA-H2-A26U TCGA-IM-A3U2 
        4.14         6.54         4.54         6.77         3.48         2.63 
TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A42S 
        1.35        31.82        24.69        22.29         2.47 

subtype1 subtype2 subtype3 
    0.30     0.07     0.03 
subtype1 subtype2 subtype3 
  112.57   138.05   147.42 
subtype1 subtype2 subtype3 
   7.630   10.355    8.420 
[1] "0.3 - 112.6 (7.6)"  "0.1 - 138.1 (10.4)" "0.0 - 147.4 (8.4)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[253] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[271] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[289] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[295] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[313] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[319] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[325] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[331] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[361] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[367] "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[253] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[271] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[289] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[295] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[313] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[319] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[325] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[331] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[361] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[367] "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[217] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[229] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[253] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[271] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[289] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[295] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[313] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[319] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[325] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[331] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[361] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[367] "subtype2" "subtype1"
D9V2, continuous
D9V3, binary
          cls
clus         0   1
  subtype1  77  26
  subtype2 104  39
  subtype3  98  29
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   77   26
  subtype2  104   39
  subtype3   98   29
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       77      104       98
  MALE         26       39       29
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              3                                            40
  subtype2              1                                           116
  subtype3              2                                            98
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     60
  subtype2                                                                     14
  subtype3                                                                      8
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   0
  subtype2                                                                  12
  subtype3                                                                  19
D9V4, multiclass
D9V5, binary
          cls
clus         0   1
  subtype1   2 101
  subtype2  10 133
  subtype3   2 125
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  101
  subtype2   10  133
  subtype3    2  125
     clus
vv    subtype1 subtype2 subtype3
  NO         2       10        2
  YES      101      133      125
D9V6, binary
          cls
clus         0   1
  subtype1  90   4
  subtype2 120   6
  subtype3 108   6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   90    4
  subtype2  120    6
  subtype3  108    6
     clus
vv    subtype1 subtype2 subtype3
  NO        90      120      108
  YES        4        6        6
          vv
clus       M0 M1 MX
  subtype1 41  2 59
  subtype2 72  3 68
  subtype3 82  1 44
D9V7, multiclass
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1            9                       1   88                   0
  subtype2           42                       1   92                   0
  subtype3           45                      10   68                   1
D9V8, multiclass
          vv
clus       N0 N1 N1A N1B NX
  subtype1 70  4   5   6 18
  subtype2 59 18  40  15 11
  subtype3 47 16  30  28  6
D9V9, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1  82   7   0   8
  subtype2 114   7   2   9
  subtype3  97  16   0   7
D9V10, multiclass
D9V11, continuous
D9V12, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      57       22        16        0         4         2
  subtype2      88       16        28        0         9         1
  subtype3      65        5        39        1        16         1
D9V13, multiclass
D9V14, binary
          cls
clus        0  1
  subtype1 45 55
  subtype2 63 75
  subtype3 57 69
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   45   55
  subtype2   63   75
  subtype3   57   69
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       45       63       57
  UNIFOCAL         55       75       69
D9V15, continuous

Clustering(10) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1 138   7
  subtype2  92   3
  subtype3 128   0
subtype1 subtype2 subtype3 
     145       95      128 
subtype1 subtype2 subtype3 
       7        3        0 
$subtype1
TCGA-BJ-A0ZB TCGA-BJ-A0ZG TCGA-BJ-A28T TCGA-BJ-A28X TCGA-BJ-A28Z TCGA-BJ-A3PR 
        4.01         7.56         2.76        17.49         1.22         8.02 
TCGA-BJ-A3PT TCGA-CE-A27D TCGA-CE-A3MD TCGA-CE-A481 TCGA-DJ-A13O TCGA-DJ-A1QD 
       12.07         0.10         0.20         0.10         7.07        10.98 
TCGA-DJ-A1QE TCGA-DJ-A1QH TCGA-DJ-A1QM TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN 
       99.98         7.99         0.99         1.02         5.95         9.99 
TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PV TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q1 
        1.94         9.60         7.96         8.78         8.42         9.34 
TCGA-DJ-A2Q3 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A3UM 
        9.21         8.61         7.07        10.36        12.43        17.23 
TCGA-DJ-A3UQ TCGA-DJ-A3UU TCGA-DJ-A3UV TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY 
        9.11        17.69        19.40        43.00        11.34        13.32 
TCGA-DJ-A3UZ TCGA-DJ-A3V0 TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V6 TCGA-DJ-A3V8 
       12.76        25.02        14.56         7.86        14.93         8.52 
TCGA-DJ-A3V9 TCGA-DJ-A3VD TCGA-DJ-A3VF TCGA-DJ-A3VJ TCGA-DO-A2HM TCGA-E8-A242 
        7.13        11.51         7.73        17.36         2.30         1.12 
TCGA-E8-A2EA TCGA-E8-A3X7 TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 
        0.36         1.48         0.33         0.23         0.16         0.72 
TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A434 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM 
        0.53         0.16         0.23         0.39         0.39        26.73 
TCGA-EL-A3CN TCGA-EL-A3CO TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CU 
      130.03        97.74       120.20         7.66        45.53       145.38 
TCGA-EL-A3CV TCGA-EL-A3D1 TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GU 
       37.94        74.27         1.41        30.18       102.84       124.04 
TCGA-EL-A3GV TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 TCGA-EL-A3MY TCGA-EL-A3MZ 
       39.81        52.73       126.97       128.61        17.49        52.47 
TCGA-EL-A3N3 TCGA-EL-A3T0 TCGA-EL-A3T1 TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3ZK 
      147.42       130.72       129.57         5.72        54.25        31.46 
TCGA-EL-A3ZL TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EM-A1YD TCGA-EM-A22I TCGA-EM-A22P 
       50.30        43.50         7.04        39.75         2.66         5.72 
TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P3 TCGA-EM-A3AK 
        5.79         2.89         6.28         6.38         0.33         9.27 
TCGA-EM-A3AR TCGA-EM-A3FQ TCGA-ET-A25G TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25R 
        6.81         4.93        35.77        14.79        12.33        20.42 
TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39R TCGA-ET-A39S 
       19.04         4.37        43.04        13.35        46.45         0.66 
TCGA-ET-A3BN TCGA-ET-A3BQ TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3DO 
        1.68         2.43        24.72         1.28         1.84        68.88 
TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DU TCGA-ET-A40Q TCGA-ET-A40T TCGA-FE-A22Z 
       44.91         2.14         4.54         7.17         2.10        51.45 
TCGA-FE-A234 TCGA-FE-A237 TCGA-FE-A3PB TCGA-FK-A3SE TCGA-FK-A3SH TCGA-FY-A3I4 
       43.82        75.35        85.12        21.99        48.10         1.12 
TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A3R8 TCGA-FY-A3YR TCGA-FY-A40K TCGA-FY-A40L 
        0.76         0.03         4.64         6.84         4.14         6.54 
TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A421 TCGA-IM-A3EB TCGA-IM-A3U2 TCGA-IM-A3U3 
        6.77         3.48         2.20        35.18         2.63         3.25 
TCGA-IM-A420 TCGA-J8-A3NZ TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YF TCGA-J8-A3YG 
        2.96         2.24         1.35        31.82        24.69        22.29 
TCGA-J8-A42S 
        2.47 

$subtype2
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       15.75        11.70         7.63         8.68         6.02         7.79 
TCGA-BJ-A0ZF TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28V 
        6.90         2.79         0.43         7.73         8.09         5.10 
TCGA-BJ-A45C TCGA-CE-A484 TCGA-DE-A2OL TCGA-DJ-A13M TCGA-DJ-A13R TCGA-DJ-A13S 
        5.72         0.39         5.29         9.01         3.02         8.71 
TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A2PP TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 
       14.93         6.97         6.97         5.00         8.12         6.77 
TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3US TCGA-DJ-A3UT TCGA-DJ-A3VG TCGA-DJ-A3VM 
       10.85         5.49        20.71        15.42         8.32        15.81 
TCGA-E3-A3DZ TCGA-EL-A3CX TCGA-EL-A3CZ TCGA-EL-A3GO TCGA-EL-A3GW TCGA-EL-A3H1 
       12.07        72.79        52.77        39.32        37.25        49.32 
TCGA-EL-A3H2 TCGA-EL-A3T2 TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EM-A1CW TCGA-EM-A1YA 
       33.47        32.48        78.97        48.16         8.05         7.13 
TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L 
        9.34        46.72        21.37         6.81         6.64         4.54 
TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CM 
        6.87         6.31        11.44         8.19         6.87        11.74 
TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT 
       11.31         6.02         2.96         6.54         7.17        10.49 
TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AJ 
       11.61         7.20        11.41         7.36         6.61        13.05 
TCGA-EM-A3AP TCGA-EM-A3O8 TCGA-EM-A3OB TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N3 
        5.29         0.49         2.33         0.33         0.49         6.51 
TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39N TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P 
       38.86         0.30        83.34         0.30       112.57         3.22 
TCGA-FE-A239 TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP 
       33.63         0.89         1.25         1.64         0.99         0.59 
TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A40N TCGA-H2-A2K9 TCGA-H2-A3RH 
        2.17         0.76         0.95         0.89         4.77         4.87 
TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A3O1 TCGA-KS-A41I TCGA-KS-A41L 
        9.63        12.89        13.64        15.95        86.70 

$subtype3
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZH TCGA-BJ-A0ZJ TCGA-BJ-A28R 
        5.98         6.48         8.25         0.72         5.00         4.87 
TCGA-BJ-A290 TCGA-BJ-A3PU TCGA-CE-A13K TCGA-CE-A3ME TCGA-CE-A482 TCGA-CE-A483 
       20.58        10.03         0.53         0.23         0.07         0.10 
TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN TCGA-DJ-A13P TCGA-DJ-A13T 
       13.22         7.59        31.30         9.40       138.05        24.92 
TCGA-DJ-A13U TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A2PO 
       12.92         7.99        18.05         4.96         8.98         7.96 
TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2Q4 
       20.48        10.45        10.26         7.69         5.03         9.44 
TCGA-DJ-A2Q5 TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO 
        9.90         9.57         9.99         8.25        12.49        15.78 
TCGA-DJ-A3UR TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V7 TCGA-DJ-A3VA TCGA-DJ-A3VB 
       23.70         7.40        17.75         9.83        11.93        11.21 
TCGA-DJ-A3VE TCGA-DO-A1JZ TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E1 
        4.41        40.27         3.06        31.07        50.76        40.18 
TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A438 
       46.72        20.88        14.04         0.26         1.48         6.90 
TCGA-EL-A3GS TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3MW TCGA-EL-A3N2 
       53.13        88.77        27.85        38.66        93.44        12.16 
TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TB TCGA-EL-A3ZG 
      116.91        98.20        41.29        95.38        82.82        77.33 
TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A22M 
       45.53        44.61        19.07         5.03         7.04         3.48 
TCGA-EM-A22O TCGA-EM-A2CS TCGA-EM-A2OZ TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ 
        6.21         9.34         9.34        11.21        11.05         8.61 
TCGA-EM-A3FJ TCGA-EM-A3SU TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25N TCGA-ET-A25O 
       16.64         8.78        29.69        19.36         2.47         4.44 
TCGA-ET-A2MX TCGA-ET-A2MZ TCGA-ET-A2N1 TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39K 
       54.02        12.26        14.76         1.41        11.90        67.66 
TCGA-ET-A39L TCGA-ET-A39M TCGA-ET-A39T TCGA-ET-A3BO TCGA-ET-A3BP TCGA-ET-A3BS 
        1.94        74.50         7.79         5.82         4.18         5.52 
TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DP TCGA-ET-A3DT TCGA-ET-A3DW TCGA-ET-A40R 
        2.37         4.50        50.50         4.77        24.69         4.80 
TCGA-ET-A40S TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A235 
        5.00        47.41        12.30        44.25        24.69       102.90 
TCGA-FE-A236 TCGA-FE-A238 TCGA-FE-A23A TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FE-A3PD 
       66.77        39.95        62.70        94.42        61.41        62.89 
TCGA-FK-A3S3 TCGA-FK-A3SB TCGA-FK-A3SG TCGA-FY-A3BL TCGA-FY-A3ON TCGA-FY-A3RA 
       46.06         4.08         0.92         1.15         1.51         9.14 
TCGA-FY-A40M TCGA-H2-A3RI TCGA-H2-A422 TCGA-IM-A3ED TCGA-J8-A3YE TCGA-J8-A3YH 
        4.54         2.96         2.89        30.87        27.81         5.72 
TCGA-KS-A41F TCGA-KS-A41J 
      120.99        15.68 

subtype1 subtype2 subtype3 
    0.03     0.30     0.07 
subtype1 subtype2 subtype3 
  147.42   112.57   138.05 
subtype1 subtype2 subtype3 
    8.52     7.36    11.13 
[1] "0.0 - 147.4 (8.5)"  "0.3 - 112.6 (7.4)"  "0.1 - 138.1 (11.1)"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [79] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[109] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[163] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[187] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[235] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[247] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[253] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[259] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[271] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[283] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[295] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[307] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[313] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[319] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[325] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[331] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[337] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[343] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[349] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[355] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[361] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[367] "subtype3" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [79] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[109] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[163] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[187] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[235] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[247] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[253] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[259] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[271] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[283] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[295] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[307] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[313] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[319] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[325] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[331] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[337] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[343] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[349] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[355] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[361] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[367] "subtype3" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [61] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [79] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[109] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[163] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[187] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[235] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[247] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[253] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[259] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[271] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[283] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[295] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[307] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[313] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[319] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[325] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[331] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[337] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[343] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[349] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[355] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[361] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[367] "subtype3" "subtype2"
D10V2, continuous
D10V3, binary
          cls
clus         0   1
  subtype1 116  32
  subtype2  72  23
  subtype3  91  39
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  116   32
  subtype2   72   23
  subtype3   91   39
        clus
vv       subtype1 subtype2 subtype3
  FEMALE      116       72       91
  MALE         32       23       39
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                           113
  subtype2              3                                            33
  subtype3              1                                           108
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                      9
  subtype2                                                                     59
  subtype3                                                                     14
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                  24
  subtype2                                                                   0
  subtype3                                                                   7
D10V4, multiclass
D10V5, binary
          cls
clus         0   1
  subtype1   3 145
  subtype2   1  94
  subtype3  10 120
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3  145
  subtype2    1   94
  subtype3   10  120
     clus
vv    subtype1 subtype2 subtype3
  NO         3        1       10
  YES      145       94      120
D10V6, binary
          cls
clus         0   1
  subtype1 129   6
  subtype2  82   4
  subtype3 107   6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  129    6
  subtype2   82    4
  subtype3  107    6
     clus
vv    subtype1 subtype2 subtype3
  NO       129       82      107
  YES        6        4        6
          vv
clus       M0 M1 MX
  subtype1 91  1 56
  subtype2 39  2 53
  subtype3 65  3 62
D10V7, multiclass
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           55                      10   78                   1
  subtype2            8                       0   82                   0
  subtype3           33                       2   88                   0
D10V8, multiclass
          vv
clus       N0 N1 N1A N1B NX
  subtype1 57 19  35  27 10
  subtype2 68  3   3   5 16
  subtype3 51 16  37  17  9
D10V9, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 112  17   1  10
  subtype2  78   5   0   6
  subtype3 103   8   1   8
D10V10, multiclass
D10V11, continuous
D10V12, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      76        6        47        1        16         1
  subtype2      52       22        15        0         2         2
  subtype3      82       15        21        0        11         1
D10V13, multiclass
D10V14, binary
          cls
clus        0  1
  subtype1 64 82
  subtype2 41 53
  subtype3 60 64
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   64   82
  subtype2   41   53
  subtype3   60   64
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       64       41       60
  UNIFOCAL         82       53       64
D10V15, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                     "HISTOLOGICAL.TYPE" 
                                      V5 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V6 
                     "RADIATIONEXPOSURE" 
                                      V7 
                    "DISTANT.METASTASIS" 
                                      V8 
              "EXTRATHYROIDAL.EXTENSION" 
                                      V9 
                 "LYMPH.NODE.METASTASIS" 
                                     V10 
             "COMPLETENESS.OF.RESECTION" 
                                     V11 
                 "NUMBER.OF.LYMPH.NODES" 
                                     V12 
                       "TUMOR.STAGECODE" 
                                     V13 
                 "NEOPLASM.DISEASESTAGE" 
                                     V14 
                         "MULTIFOCALITY" 
                                     V15 
                            "TUMOR.SIZE" 
> q(save="no")
