		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	0 (0%)	476	3.2915e-06	0.00122	0.074376	1	0.015262	1	0.082642	1	0.011987	1	0.0010209	0.283	0.2243	1	0.20446	1	0.17669	1	0.21595	1
4p gain	0 (0%)	493	1.8464e-05	0.00655	0.018568	1	NA	NA	NA	NA	0.037836	1	0.02155	1	0.11167	1	0.097517	1	0.07186	1	0.10082	1
4q gain	0 (0%)	493	1.8464e-05	0.00655	0.018568	1	NA	NA	NA	NA	0.037836	1	0.02155	1	0.11167	1	0.097517	1	0.07186	1	0.10082	1
5p gain	0 (0%)	480	6.9657e-20	2.81e-17	0.000873	0.244	1	1	0.12522	1	0.0023544	0.607	0.00053814	0.156	0.0069104	1	0.0005414	0.156	0.0048744	1	0.00075033	0.211
5q gain	0 (0%)	483	2.602e-18	1.05e-15	4.0181e-05	0.0136	0.90108	1	0.02989	1	0.00016395	0.0518	4.7055e-05	0.0158	0.001456	0.392	0.00010604	0.0341	0.00099072	0.275	0.00011856	0.0379
7p gain	0 (0%)	480	1.5893e-22	6.42e-20	0.00016855	0.0531	1	1	0.01288	1	0.00041041	0.121	6.0524e-05	0.0199	0.0023192	0.601	0.00027181	0.0829	0.0013504	0.367	0.00041783	0.122
7q gain	0 (0%)	478	1.7604e-23	7.13e-21	3.6539e-05	0.0124	0.68867	1	0.002983	0.752	5.0592e-05	0.0168	6.1839e-06	0.00224	0.00028923	0.0879	2.8747e-05	0.00992	0.00019992	0.0622	3.5912e-05	0.0122
11p gain	0 (0%)	492	0.0013394	0.366	0.0042109	1	NA	NA	NA	NA	0.012677	1	0.005523	1	0.0022796	0.597	0.0013163	0.361	0.002103	0.555	0.0015024	0.403
11q gain	0 (0%)	493	0.0002043	0.0633	0.018568	1	NA	NA	NA	NA	0.037836	1	0.02155	1	0.007784	1	0.005026	1	0.0072995	1	0.005584	1
12p gain	0 (0%)	486	1.0266e-12	4.09e-10	2.8691e-06	0.00107	0.90108	1	0.02989	1	1.6038e-05	0.00577	2.1165e-06	0.000794	5.1942e-05	0.0172	1.6978e-05	0.00606	3.4295e-05	0.0118	2.0016e-05	0.00701
12q gain	0 (0%)	485	1.27e-12	5.04e-10	6.4843e-07	0.000248	0.90108	1	0.02989	1	4.4561e-06	0.00165	6.4863e-07	0.000248	1.638e-05	0.00588	4.848e-06	0.00179	6.1086e-06	0.00222	5.7595e-06	0.00211
13q gain	0 (0%)	494	0.00029424	0.0892	0.048893	1	NA	NA	NA	NA	0.10293	1	0.06564	1	NA	NA	NA	NA	NA	NA	NA	NA
14q gain	0 (0%)	489	5.0177e-09	1.95e-06	8.7584e-05	0.0285	1	1	0.25562	1	0.00032501	0.0975	0.00014844	0.0472	0.0046709	1	0.0022936	0.599	0.002907	0.735	0.0025574	0.65
16p gain	0 (0%)	485	5.5123e-14	2.21e-11	3.2107e-05	0.011	1	1	0.044488	1	0.00013226	0.0422	2.6942e-05	0.00935	0.00021395	0.0657	5.8815e-05	0.0194	8.2791e-05	0.0271	8.3543e-05	0.0272
16q gain	0 (0%)	487	5.6685e-13	2.26e-10	0.00022415	0.0686	0.85601	1	0.12945	1	0.0013145	0.361	0.00038956	0.115	0.0016904	0.448	0.00054668	0.157	0.00071275	0.201	0.00075817	0.212
17p gain	0 (0%)	485	1.9977e-09	7.81e-07	6.4843e-07	0.000248	0.7724	1	0.017869	1	4.4561e-06	0.00165	6.4863e-07	0.000248	5.1942e-05	0.0172	1.6978e-05	0.00606	3.4295e-05	0.0118	2.0016e-05	0.00701
17q gain	0 (0%)	484	3.8322e-09	1.49e-06	3.7333e-07	0.000143	0.79537	1	0.020579	1	1.5135e-06	0.000569	1.6021e-07	6.15e-05	1.638e-05	0.00588	4.848e-06	0.00179	6.1086e-06	0.00222	5.7595e-06	0.00211
18p gain	0 (0%)	494	0.0024459	0.629	0.048893	1	NA	NA	NA	NA	0.10293	1	0.06564	1	NA	NA	NA	NA	NA	NA	NA	NA
18q gain	0 (0%)	494	0.0024459	0.629	0.048893	1	NA	NA	NA	NA	0.10293	1	0.06564	1	NA	NA	NA	NA	NA	NA	NA	NA
19p gain	0 (0%)	493	1.8464e-05	0.00655	0.018568	1	NA	NA	NA	NA	0.037836	1	0.02155	1	0.026428	1	0.019063	1	0.025189	1	0.020622	1
19q gain	0 (0%)	492	1.1236e-06	0.000425	0.0042109	1	0.63557	1	0.055144	1	0.012677	1	0.005523	1	0.007784	1	0.005026	1	0.0072995	1	0.005584	1
20p gain	0 (0%)	488	1.1065e-11	4.37e-09	0.00070568	0.2	1	1	0.081715	1	0.0037415	0.939	0.0014423	0.391	0.012444	1	0.0061924	1	0.0057349	1	0.0064492	1
20q gain	0 (0%)	488	1.1065e-11	4.37e-09	0.00070568	0.2	1	1	0.081715	1	0.0037415	0.939	0.0014423	0.391	0.012444	1	0.0061924	1	0.0057349	1	0.0064492	1
21q gain	0 (0%)	494	0.0024459	0.629	0.048893	1	NA	NA	NA	NA	0.10293	1	0.06564	1	0.026428	1	0.019063	1	0.025189	1	0.020622	1
1p loss	0 (0%)	494	0.00029424	0.0892	0.55354	1	NA	NA	NA	NA	0.50251	1	0.18428	1	0.2996	1	0.27592	1	0.19962	1	0.28169	1
2p loss	0 (0%)	489	5.0177e-09	1.95e-06	8.7584e-05	0.0285	1	1	0.081715	1	0.00032501	0.0975	0.00014844	0.0472	5.5292e-05	0.0182	2.2703e-05	0.0079	4.8519e-05	0.0162	2.8131e-05	0.00973
2q loss	0 (0%)	490	3.7767e-09	1.47e-06	0.0003639	0.108	0.83694	1	0.05495	1	0.0015335	0.409	0.00053356	0.155	0.00019214	0.06	8.8476e-05	0.0286	0.00017146	0.0538	0.00010664	0.0342
3q loss	0 (0%)	494	0.00029424	0.0892	0.048893	1	NA	NA	NA	NA	0.10293	1	0.06564	1	0.026428	1	0.019063	1	0.025189	1	0.020622	1
6q loss	0 (0%)	494	0.021827	1	0.048893	1	NA	NA	NA	NA	0.10293	1	0.06564	1	0.026428	1	0.019063	1	0.025189	1	0.020622	1
8p loss	0 (0%)	493	1.8464e-05	0.00655	0.045744	1	NA	NA	NA	NA	0.037836	1	0.02155	1	0.007784	1	0.005026	1	0.0072995	1	0.005584	1
8q loss	0 (0%)	493	1.8464e-05	0.00655	0.045744	1	NA	NA	NA	NA	0.037836	1	0.02155	1	0.007784	1	0.005026	1	0.0072995	1	0.005584	1
9p loss	0 (0%)	485	1.0764e-11	4.26e-09	0.26674	1	0.55913	1	0.2062	1	0.091104	1	0.094379	1	0.18481	1	0.15941	1	0.14983	1	0.17644	1
9q loss	0 (0%)	480	1.5806e-13	6.32e-11	0.17701	1	0.21009	1	0.0044095	1	0.18984	1	0.13911	1	0.2355	1	0.22795	1	0.16829	1	0.24127	1
10p loss	0 (0%)	491	6.6228e-08	2.56e-05	0.094375	1	NA	NA	NA	NA	0.047873	1	0.014167	1	0.039885	1	0.033299	1	0.025144	1	0.034786	1
10q loss	0 (0%)	492	1.1236e-06	0.000425	0.17117	1	NA	NA	NA	NA	0.1044	1	0.041478	1	0.11167	1	0.097517	1	0.07186	1	0.10082	1
11p loss	0 (0%)	490	7.7423e-08	2.98e-05	0.011626	1	0.49868	1	1	1	0.0060271	1	0.014263	1	0.039885	1	0.033299	1	0.025144	1	0.034786	1
11q loss	0 (0%)	488	3.2424e-06	0.00121	0.014215	1	0.38774	1	0.79799	1	0.014323	1	0.01475	1	0.013813	1	0.0074995	1	0.0086168	1	0.011743	1
13q loss	0 (0%)	486	0.012252	1	0.022688	1	0.077855	1	1	1	0.020758	1	0.012932	1	0.0077405	1	0.016433	1	0.0086007	1	0.0023048	0.599
15q loss	0 (0%)	490	0.00046394	0.135	0.00226	0.594	0.45787	1	0.25562	1	0.0015335	0.409	0.00053356	0.155	0.00066375	0.189	0.00034244	0.102	0.00060228	0.172	0.00040159	0.118
17p loss	0 (0%)	490	0.0011815	0.326	1	1	1	1	1	1	0.79034	1	0.75525	1	0.51802	1	0.49856	1	0.79911	1	0.49959	1
18p loss	0 (0%)	493	0.0002043	0.0633	0.18642	1	1	1	0.36851	1	0.22381	1	0.081366	1	0.074254	1	0.067089	1	0.10943	1	0.068103	1
18q loss	0 (0%)	493	0.0002043	0.0633	0.18642	1	1	1	0.36851	1	0.22381	1	0.081366	1	0.074254	1	0.067089	1	0.10943	1	0.068103	1
19p loss	0 (0%)	493	0.13197	1	0.018568	1	0.28073	1	0.36851	1	0.037836	1	0.02155	1	0.007784	1	0.005026	1	0.0072995	1	0.005584	1
21q loss	0 (0%)	491	0.00019167	0.06	0.094375	1	0.38423	1	0.055144	1	0.20933	1	0.22229	1	0.039885	1	0.033299	1	0.025144	1	0.034786	1
22q loss	0 (0%)	431	6.79e-58	2.76e-55	4.4549e-05	0.015	0.11409	1	0.083458	1	2.2619e-11	8.89e-09	2.5877e-11	1.01e-08	4.327e-05	0.0146	9.5128e-06	0.00343	3.9323e-05	0.0133	4.8495e-06	0.00179
