This pipeline computes the correlation between significant copy number variation (cnv) genes and molecular subtypes.
Testing the association between copy number variation of 98 peak regions and 12 molecular subtypes across 492 patients, 703 significant findings detected with Q value < 0.25.
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Amp Peak 1(1p35.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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Amp Peak 2(1p34.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 3(1p22.3) cnvs correlated to 'CN_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 4(1q21.3) cnvs correlated to 'CN_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 5(1q22) cnvs correlated to 'CN_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 6(1q42.3) cnvs correlated to 'CN_CNMF'.
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Amp Peak 7(2p23.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 8(2q13) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 9(3p25.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 10(3p14.1) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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Amp Peak 11(3q26.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 12(3q26.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 13(4p16.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 14(5p15.33) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 15(5q35.3) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 16(6p24.2) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 17(6q25.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 18(7q22.1) cnvs correlated to 'CN_CNMF'.
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Amp Peak 19(8p11.21) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 20(8q24.21) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 21(8q24.21) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 22(9p24.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 23(9q34.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 24(10q22.2) cnvs correlated to 'CN_CNMF'.
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Amp Peak 25(11p11.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 26(11q13.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 27(12p12.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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Amp Peak 28(12q13.11) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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Amp Peak 29(12q13.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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Amp Peak 30(13q34) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 31(14q24.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 32(14q32.33) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 33(16p11.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 34(17q11.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 35(17q12) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 36(17q25.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 37(18p11.31) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 38(18q11.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 39(19p13.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 40(19p13.11) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 41(19q12) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 42(20p13) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 43(20q11.21) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 44(20q13.12) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 45(20q13.33) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 46(22q12.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 47(Xp11.23) cnvs correlated to 'CN_CNMF'.
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Amp Peak 48(Xq28) cnvs correlated to 'CN_CNMF'.
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Del Peak 1(1p36.21) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 2(1p36.11) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 4(2p25.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 5(2q22.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 6(2q37.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 7(3p14.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 8(3q13.31) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 9(4p16.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 10(4p15.31) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 11(4q22.1) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 12(4q34.3) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 13(5q11.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 14(6q26) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 15(7p22.3) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 16(7q11.22) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 17(7q31.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 18(7q36.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 19(8p23.2) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 20(9p23) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 21(9q34.11) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 22(10q23.31) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 23(11p15.5) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 24(11q14.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 25(11q25) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 26(12q23.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 27(12q24.33) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 28(13q11) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 29(13q14.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 30(14q13.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 31(15q15.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 32(15q23) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 33(16p13.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 34(16q21) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 35(16q23.1) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 36(17p13.3) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 37(17p12) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 38(17p11.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 39(17q11.2) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 40(17q21.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 41(18q23) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 42(19p13.3) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 43(19p12) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 44(19q13.43) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 45(20p12.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 46(22q11.1) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 47(22q12.1) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 48(22q13.31) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
Del Peak 49(22q13.32) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
Del Peak 50(Xp21.1) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 98 regions and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by Q value < 0.25, 703 significant findings detected.
|
Molecular subtypes |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
| nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Chi-square test | Fisher's exact test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
| Amp Peak 11(3q26 2) | 0 (0%) | 337 |
5.91e-05 (0.0311) |
5.43e-05 (0.0287) |
3.77e-61 (4.36e-58) |
1.73e-17 (1.73e-14) |
0.000353 (0.166) |
0.0154 (1.00) |
1.91e-25 (2.08e-22) |
3.67e-25 (3.99e-22) |
5.62e-26 (6.15e-23) |
3.4e-24 (3.69e-21) |
5.96e-07 (0.000388) |
1.37e-08 (1e-05) |
| Del Peak 21(9q34 11) | 0 (0%) | 370 |
2.35e-05 (0.0132) |
1.13e-06 (0.000726) |
5.04e-52 (5.78e-49) |
1.53e-11 (1.29e-08) |
0.000384 (0.18) |
0.0316 (1.00) |
1.13e-17 (1.13e-14) |
4.84e-24 (5.23e-21) |
5.09e-18 (5.14e-15) |
1.85e-16 (1.79e-13) |
6.64e-05 (0.0347) |
6.75e-05 (0.0353) |
| Del Peak 42(19p13 3) | 0 (0%) | 351 |
9.09e-06 (0.00536) |
1.96e-07 (0.000131) |
6e-78 (6.94e-75) |
2.44e-30 (2.7e-27) |
8.99e-06 (0.00531) |
0.0146 (1.00) |
4.05e-36 (4.56e-33) |
1.96e-36 (2.2e-33) |
2.67e-35 (3e-32) |
4.55e-37 (5.13e-34) |
3.39e-12 (2.95e-09) |
4.52e-14 (4.16e-11) |
| Amp Peak 12(3q26 2) | 0 (0%) | 348 |
0.000342 (0.162) |
0.000377 (0.178) |
8.96e-60 (1.03e-56) |
7.58e-19 (7.84e-16) |
0.0015 (0.622) |
0.0249 (1.00) |
1.89e-25 (2.06e-22) |
7.53e-26 (8.23e-23) |
1.1e-23 (1.19e-20) |
9.82e-25 (1.07e-21) |
2.64e-08 (1.89e-05) |
5.76e-11 (4.74e-08) |
| Amp Peak 16(6p24 2) | 0 (0%) | 391 |
0.00296 (1.00) |
0.000377 (0.178) |
1.36e-39 (1.54e-36) |
1.83e-11 (1.54e-08) |
0.000177 (0.0863) |
0.059 (1.00) |
6.92e-16 (6.64e-13) |
1.49e-14 (1.39e-11) |
1.26e-16 (1.22e-13) |
4.77e-15 (4.5e-12) |
7.41e-06 (0.00443) |
2.23e-06 (0.00139) |
| Amp Peak 36(17q25 1) | 0 (0%) | 402 |
0.000187 (0.091) |
1.94e-05 (0.0112) |
4.44e-41 (5.02e-38) |
1.15e-11 (9.87e-09) |
0.00741 (1.00) |
0.193 (1.00) |
2.59e-12 (2.27e-09) |
3.88e-13 (3.48e-10) |
5.61e-17 (5.53e-14) |
7.58e-18 (7.59e-15) |
5.34e-05 (0.0284) |
2.61e-07 (0.000174) |
| Amp Peak 39(19p13 2) | 0 (0%) | 408 |
2.35e-05 (0.0132) |
1.13e-06 (0.000726) |
2.95e-46 (3.36e-43) |
1.36e-09 (1.05e-06) |
0.15 (1.00) |
0.0408 (1.00) |
1.09e-18 (1.12e-15) |
1.76e-18 (1.8e-15) |
1.03e-18 (1.06e-15) |
1.45e-14 (1.35e-11) |
0.000407 (0.19) |
8.24e-05 (0.0425) |
| Del Peak 37(17p12) | 0 (0%) | 371 |
0.000187 (0.091) |
1.94e-05 (0.0112) |
2.57e-58 (2.97e-55) |
1.65e-15 (1.57e-12) |
0.00125 (0.529) |
0.681 (1.00) |
2.64e-25 (2.87e-22) |
5.65e-29 (6.23e-26) |
1.12e-20 (1.17e-17) |
1.14e-18 (1.17e-15) |
1.22e-05 (0.00716) |
2.43e-06 (0.00151) |
| Del Peak 38(17p11 2) | 0 (0%) | 386 |
0.000111 (0.0559) |
7.26e-06 (0.00435) |
3.67e-52 (4.21e-49) |
1.5e-13 (1.36e-10) |
0.0247 (1.00) |
0.378 (1.00) |
1.28e-19 (1.33e-16) |
5.19e-24 (5.6e-21) |
1.15e-16 (1.12e-13) |
9.38e-14 (8.55e-11) |
4.03e-05 (0.0218) |
2.56e-05 (0.0143) |
| Del Peak 48(22q13 31) | 0 (0%) | 370 |
3.62e-06 (0.00222) |
1.54e-07 (0.000104) |
9.61e-55 (1.11e-51) |
3.82e-13 (3.43e-10) |
0.0018 (0.74) |
0.153 (1.00) |
8.88e-20 (9.25e-17) |
1.44e-23 (1.55e-20) |
4.73e-18 (4.8e-15) |
1.64e-18 (1.68e-15) |
4.47e-05 (0.0239) |
5.9e-06 (0.00355) |
| Del Peak 49(22q13 32) | 0 (0%) | 364 |
2.35e-05 (0.0132) |
1.13e-06 (0.000726) |
4.93e-53 (5.66e-50) |
1.57e-12 (1.39e-09) |
0.00148 (0.617) |
0.0786 (1.00) |
2.93e-18 (2.98e-15) |
1.21e-21 (1.28e-18) |
3.27e-17 (3.25e-14) |
7.13e-18 (7.16e-15) |
0.000218 (0.106) |
1.45e-05 (0.00845) |
| Amp Peak 20(8q24 21) | 0 (0%) | 304 |
0.0121 (1.00) |
0.0358 (1.00) |
1.54e-35 (1.73e-32) |
1.12e-06 (0.000721) |
8.75e-05 (0.045) |
0.504 (1.00) |
3.35e-09 (2.53e-06) |
1.26e-11 (1.08e-08) |
3.45e-11 (2.86e-08) |
4.25e-12 (3.7e-09) |
0.000232 (0.111) |
3.14e-05 (0.0173) |
| Amp Peak 21(8q24 21) | 0 (0%) | 296 |
0.00296 (1.00) |
0.00397 (1.00) |
8.36e-35 (9.38e-32) |
2.08e-05 (0.0119) |
7.26e-07 (0.000471) |
0.141 (1.00) |
1.82e-08 (1.31e-05) |
1.7e-11 (1.43e-08) |
6.82e-13 (6.07e-10) |
1.25e-11 (1.07e-08) |
0.000433 (0.201) |
8.93e-05 (0.0457) |
| Amp Peak 40(19p13 11) | 0 (0%) | 409 |
0.00381 (1.00) |
0.000454 (0.209) |
1.47e-45 (1.67e-42) |
1.04e-11 (8.95e-09) |
0.199 (1.00) |
0.309 (1.00) |
5e-17 (4.94e-14) |
5.37e-18 (5.41e-15) |
2.77e-18 (2.82e-15) |
3.22e-18 (3.27e-15) |
6.47e-06 (0.00388) |
2.99e-06 (0.00185) |
| Amp Peak 41(19q12) | 0 (0%) | 391 |
0.00518 (1.00) |
0.000132 (0.0656) |
9.02e-49 (1.03e-45) |
4.53e-17 (4.48e-14) |
0.00289 (1.00) |
0.212 (1.00) |
2.87e-21 (3.03e-18) |
2.66e-20 (2.79e-17) |
1.15e-26 (1.26e-23) |
2.06e-24 (2.23e-21) |
4.54e-07 (0.000298) |
7.11e-09 (5.28e-06) |
| Amp Peak 43(20q11 21) | 0 (0%) | 362 |
0.00253 (0.994) |
0.000132 (0.0656) |
6.65e-49 (7.6e-46) |
4.2e-12 (3.65e-09) |
0.00156 (0.645) |
0.205 (1.00) |
5.71e-16 (5.5e-13) |
1.02e-14 (9.52e-12) |
3.5e-19 (3.63e-16) |
2.62e-15 (2.49e-12) |
2.95e-05 (0.0163) |
1.45e-05 (0.00845) |
| Del Peak 11(4q22 1) | 0 (0%) | 393 |
0.00381 (1.00) |
0.000454 (0.209) |
1.04e-46 (1.18e-43) |
4.82e-18 (4.88e-15) |
0.0252 (1.00) |
0.102 (1.00) |
1.1e-16 (1.08e-13) |
1.16e-18 (1.2e-15) |
2.6e-24 (2.82e-21) |
6.82e-24 (7.35e-21) |
6.19e-09 (4.61e-06) |
2.17e-11 (1.81e-08) |
| Del Peak 12(4q34 3) | 0 (0%) | 377 |
0.00381 (1.00) |
0.000454 (0.209) |
1.43e-51 (1.64e-48) |
2.06e-15 (1.96e-12) |
0.0599 (1.00) |
0.521 (1.00) |
1.31e-18 (1.35e-15) |
8.83e-20 (9.21e-17) |
1.45e-21 (1.54e-18) |
3.27e-23 (3.51e-20) |
1.21e-10 (9.83e-08) |
5.25e-11 (4.33e-08) |
| Del Peak 15(7p22 3) | 0 (0%) | 424 |
0.000567 (0.257) |
4.17e-05 (0.0225) |
4.17e-31 (4.64e-28) |
2.48e-10 (1.97e-07) |
0.0312 (1.00) |
0.0935 (1.00) |
5.12e-14 (4.69e-11) |
4.07e-15 (3.85e-12) |
1.35e-14 (1.26e-11) |
1.5e-13 (1.36e-10) |
5.89e-05 (0.0311) |
1.01e-05 (0.00596) |
| Del Peak 19(8p23 2) | 0 (0%) | 389 |
0.00202 (0.814) |
0.000218 (0.106) |
1.03e-40 (1.17e-37) |
3.04e-21 (3.21e-18) |
0.0469 (1.00) |
0.378 (1.00) |
6.45e-17 (6.35e-14) |
5.05e-19 (5.22e-16) |
3.02e-26 (3.31e-23) |
6.04e-29 (6.66e-26) |
1.51e-11 (1.28e-08) |
9.41e-15 (8.84e-12) |
| Del Peak 32(15q23) | 0 (0%) | 392 |
0.00202 (0.814) |
0.000218 (0.106) |
7.28e-42 (8.25e-39) |
5.21e-18 (5.26e-15) |
0.104 (1.00) |
0.812 (1.00) |
1.46e-12 (1.29e-09) |
9.7e-15 (9.1e-12) |
1.26e-16 (1.22e-13) |
5.94e-18 (5.97e-15) |
7.18e-09 (5.32e-06) |
4.92e-09 (3.67e-06) |
| Del Peak 34(16q21) | 0 (0%) | 352 |
0.000771 (0.338) |
9.8e-05 (0.05) |
1.05e-56 (1.21e-53) |
5.49e-18 (5.53e-15) |
0.0797 (1.00) |
1 (1.00) |
9.4e-18 (9.41e-15) |
6.63e-16 (6.37e-13) |
1.85e-17 (1.84e-14) |
1.85e-18 (1.89e-15) |
4.79e-08 (3.36e-05) |
2.28e-08 (1.64e-05) |
| Del Peak 35(16q23 1) | 0 (0%) | 342 |
0.00296 (1.00) |
0.000377 (0.178) |
2.34e-57 (2.69e-54) |
4.58e-17 (4.53e-14) |
0.0275 (1.00) |
0.369 (1.00) |
7.07e-19 (7.32e-16) |
1.83e-14 (1.7e-11) |
1.7e-18 (1.74e-15) |
7.37e-21 (7.77e-18) |
1.66e-08 (1.21e-05) |
4.78e-10 (3.77e-07) |
| Del Peak 36(17p13 3) | 0 (0%) | 386 |
0.000771 (0.338) |
9.8e-05 (0.05) |
7.29e-49 (8.33e-46) |
2.14e-11 (1.79e-08) |
0.000824 (0.358) |
0.665 (1.00) |
7.12e-17 (7e-14) |
1.58e-19 (1.65e-16) |
1.4e-15 (1.34e-12) |
1.99e-12 (1.74e-09) |
0.000328 (0.155) |
0.000114 (0.057) |
| Del Peak 44(19q13 43) | 0 (0%) | 432 |
0.000771 (0.338) |
9.8e-05 (0.05) |
2.7e-23 (2.89e-20) |
4.19e-09 (3.14e-06) |
0.0782 (1.00) |
0.56 (1.00) |
1.28e-09 (9.95e-07) |
2.47e-09 (1.88e-06) |
1.68e-11 (1.41e-08) |
2.15e-14 (1.99e-11) |
1.81e-05 (0.0105) |
4.19e-06 (0.00254) |
| Amp Peak 1(1p35 2) | 0 (0%) | 442 |
0.151 (1.00) |
0.0272 (1.00) |
3.5e-20 (3.67e-17) |
4.46e-07 (0.000294) |
0.0001 (0.0505) |
0.267 (1.00) |
1.22e-09 (9.48e-07) |
8.4e-12 (7.23e-09) |
6.89e-08 (4.78e-05) |
2.68e-09 (2.03e-06) |
0.000421 (0.196) |
0.00648 (1.00) |
| Amp Peak 2(1p34 2) | 0 (0%) | 429 |
0.0129 (1.00) |
0.00193 (0.791) |
2.06e-28 (2.27e-25) |
1.13e-08 (8.28e-06) |
0.00924 (1.00) |
0.56 (1.00) |
7.8e-12 (6.73e-09) |
4.95e-14 (4.54e-11) |
1.27e-15 (1.21e-12) |
9.99e-16 (9.56e-13) |
4.1e-06 (0.0025) |
1.79e-06 (0.00113) |
| Amp Peak 7(2p23 2) | 0 (0%) | 381 |
0.682 (1.00) |
0.434 (1.00) |
5.04e-28 (5.55e-25) |
1.42e-10 (1.15e-07) |
0.00451 (1.00) |
0.558 (1.00) |
3.63e-06 (0.00222) |
5.02e-06 (0.00303) |
1.18e-09 (9.18e-07) |
3.91e-10 (3.09e-07) |
8.48e-06 (0.00504) |
1.23e-07 (8.39e-05) |
| Amp Peak 8(2q13) | 0 (0%) | 385 |
0.159 (1.00) |
0.0339 (1.00) |
2.77e-33 (3.1e-30) |
1.58e-12 (1.4e-09) |
0.0025 (0.983) |
0.153 (1.00) |
8.42e-11 (6.9e-08) |
1.53e-10 (1.23e-07) |
2.47e-18 (2.52e-15) |
1.16e-17 (1.16e-14) |
1.95e-08 (1.4e-05) |
1.48e-11 (1.26e-08) |
| Amp Peak 14(5p15 33) | 0 (0%) | 415 |
0.231 (1.00) |
0.0213 (1.00) |
4.71e-32 (5.25e-29) |
2.89e-12 (2.52e-09) |
0.221 (1.00) |
0.612 (1.00) |
3.21e-14 (2.96e-11) |
2.37e-12 (2.08e-09) |
2.73e-13 (2.46e-10) |
7.09e-14 (6.49e-11) |
1.51e-07 (0.000103) |
3.03e-08 (2.16e-05) |
| Amp Peak 22(9p24 2) | 0 (0%) | 435 |
0.129 (1.00) |
0.0606 (1.00) |
2.87e-22 (3.06e-19) |
4.96e-07 (0.000324) |
0.000874 (0.378) |
0.00457 (1.00) |
2.97e-09 (2.25e-06) |
1.17e-10 (9.5e-08) |
6.29e-12 (5.44e-09) |
1.84e-11 (1.54e-08) |
8.13e-05 (0.0421) |
1.03e-05 (0.00603) |
| Amp Peak 30(13q34) | 0 (0%) | 443 |
0.689 (1.00) |
0.272 (1.00) |
4.18e-20 (4.38e-17) |
1.92e-06 (0.00121) |
0.241 (1.00) |
0.0546 (1.00) |
8.41e-12 (7.24e-09) |
1.37e-07 (9.31e-05) |
4.78e-11 (3.95e-08) |
2.36e-10 (1.87e-07) |
0.00016 (0.0786) |
0.000115 (0.0573) |
| Amp Peak 34(17q11 2) | 0 (0%) | 429 |
0.151 (1.00) |
0.0272 (1.00) |
1.72e-26 (1.89e-23) |
1.71e-11 (1.44e-08) |
0.0201 (1.00) |
0.0052 (1.00) |
1.25e-10 (1.01e-07) |
4.81e-10 (3.78e-07) |
2.32e-16 (2.25e-13) |
1.28e-12 (1.14e-09) |
3.5e-06 (0.00214) |
4.33e-07 (0.000285) |
| Amp Peak 35(17q12) | 0 (0%) | 428 |
0.108 (1.00) |
0.0272 (1.00) |
5.56e-23 (5.95e-20) |
1.33e-12 (1.18e-09) |
0.0111 (1.00) |
0.438 (1.00) |
3.77e-13 (3.38e-10) |
2.74e-10 (2.17e-07) |
6.27e-16 (6.02e-13) |
8.88e-17 (8.69e-14) |
8.07e-06 (0.00481) |
1.03e-08 (7.56e-06) |
| Amp Peak 37(18p11 31) | 0 (0%) | 411 |
0.154 (1.00) |
0.0276 (1.00) |
2.43e-33 (2.72e-30) |
1.15e-11 (9.87e-09) |
0.0101 (1.00) |
0.0197 (1.00) |
1.45e-11 (1.23e-08) |
1.9e-13 (1.72e-10) |
1.28e-17 (1.27e-14) |
3.02e-19 (3.14e-16) |
1.12e-07 (7.7e-05) |
2.16e-10 (1.72e-07) |
| Amp Peak 38(18q11 2) | 0 (0%) | 430 |
0.108 (1.00) |
0.0272 (1.00) |
4.94e-27 (5.43e-24) |
3.98e-10 (3.14e-07) |
0.156 (1.00) |
0.0444 (1.00) |
1.17e-07 (7.99e-05) |
4.53e-08 (3.19e-05) |
2.27e-14 (2.1e-11) |
9.48e-17 (9.25e-14) |
1.68e-09 (1.29e-06) |
7.95e-12 (6.86e-09) |
| Amp Peak 42(20p13) | 0 (0%) | 388 |
0.151 (1.00) |
0.0272 (1.00) |
1.63e-33 (1.83e-30) |
1.54e-09 (1.19e-06) |
0.0828 (1.00) |
0.386 (1.00) |
3.74e-11 (3.1e-08) |
6.9e-11 (5.66e-08) |
1.52e-12 (1.34e-09) |
1.15e-10 (9.38e-08) |
0.000106 (0.0535) |
1.65e-05 (0.00958) |
| Amp Peak 44(20q13 12) | 0 (0%) | 356 |
0.0129 (1.00) |
0.00193 (0.791) |
2.71e-49 (3.1e-46) |
1.53e-13 (1.39e-10) |
0.00478 (1.00) |
0.105 (1.00) |
3.32e-15 (3.15e-12) |
5.03e-15 (4.74e-12) |
5.09e-18 (5.14e-15) |
9.74e-15 (9.13e-12) |
5.17e-05 (0.0275) |
3.54e-05 (0.0193) |
| Amp Peak 45(20q13 33) | 0 (0%) | 358 |
0.0243 (1.00) |
0.00409 (1.00) |
1.54e-46 (1.75e-43) |
1.26e-10 (1.02e-07) |
0.0674 (1.00) |
0.686 (1.00) |
5.7e-13 (5.09e-10) |
8.5e-14 (7.76e-11) |
5.18e-17 (5.11e-14) |
8.14e-13 (7.24e-10) |
0.000438 (0.203) |
0.000113 (0.057) |
| Amp Peak 46(22q12 2) | 0 (0%) | 438 |
0.379 (1.00) |
0.0902 (1.00) |
2.31e-18 (2.35e-15) |
2.13e-14 (1.98e-11) |
0.181 (1.00) |
0.0546 (1.00) |
6.35e-13 (5.66e-10) |
8.42e-11 (6.9e-08) |
1.93e-19 (2.01e-16) |
7.32e-18 (7.34e-15) |
2.63e-09 (2e-06) |
8.29e-09 (6.12e-06) |
| Del Peak 1(1p36 21) | 0 (0%) | 427 |
0.0243 (1.00) |
0.00409 (1.00) |
1.79e-23 (1.92e-20) |
3.39e-07 (0.000225) |
0.00518 (1.00) |
0.267 (1.00) |
1.55e-11 (1.31e-08) |
7.33e-09 (5.42e-06) |
5.45e-09 (4.07e-06) |
1.53e-10 (1.23e-07) |
2.44e-05 (0.0136) |
2.05e-05 (0.0117) |
| Del Peak 2(1p36 11) | 0 (0%) | 414 |
0.0515 (1.00) |
0.00755 (1.00) |
9.91e-33 (1.11e-29) |
5.91e-11 (4.86e-08) |
0.0339 (1.00) |
0.393 (1.00) |
1.96e-12 (1.72e-09) |
3.18e-11 (2.65e-08) |
1.66e-14 (1.54e-11) |
8.64e-16 (8.27e-13) |
3.01e-06 (0.00186) |
4.67e-08 (3.28e-05) |
| Del Peak 7(3p14 2) | 0 (0%) | 423 |
0.0515 (1.00) |
0.00755 (1.00) |
5.91e-31 (6.57e-28) |
1.99e-09 (1.52e-06) |
0.000952 (0.409) |
0.0197 (1.00) |
3.77e-15 (3.57e-12) |
1.8e-14 (1.67e-11) |
1.39e-13 (1.27e-10) |
1.98e-12 (1.74e-09) |
4.12e-05 (0.0222) |
2.6e-05 (0.0144) |
| Del Peak 9(4p16 3) | 0 (0%) | 405 |
0.0129 (1.00) |
0.00193 (0.791) |
1.41e-30 (1.57e-27) |
5.4e-12 (4.69e-09) |
0.0096 (1.00) |
0.244 (1.00) |
1.57e-10 (1.26e-07) |
9.13e-11 (7.46e-08) |
4.73e-15 (4.47e-12) |
6.11e-13 (5.45e-10) |
3.35e-05 (0.0183) |
7.51e-07 (0.000487) |
| Del Peak 10(4p15 31) | 0 (0%) | 402 |
0.0129 (1.00) |
0.00193 (0.791) |
4.15e-35 (4.66e-32) |
1.8e-13 (1.63e-10) |
0.0203 (1.00) |
0.346 (1.00) |
3.81e-11 (3.15e-08) |
4.36e-11 (3.61e-08) |
1.18e-18 (1.21e-15) |
3.21e-16 (3.1e-13) |
1.21e-06 (0.000768) |
1.45e-08 (1.06e-05) |
| Del Peak 13(5q11 2) | 0 (0%) | 392 |
0.0129 (1.00) |
0.00193 (0.791) |
8.55e-49 (9.76e-46) |
2.97e-16 (2.87e-13) |
0.000858 (0.372) |
0.01 (1.00) |
7.39e-17 (7.25e-14) |
3.24e-17 (3.22e-14) |
3.5e-19 (3.63e-16) |
3.56e-18 (3.61e-15) |
3.67e-07 (0.000242) |
3.8e-08 (2.69e-05) |
| Del Peak 14(6q26) | 0 (0%) | 448 |
0.379 (1.00) |
0.0902 (1.00) |
9.63e-15 (9.04e-12) |
4.33e-08 (3.05e-05) |
0.675 (1.00) |
0.301 (1.00) |
2.29e-06 (0.00143) |
7.75e-05 (0.0403) |
6.15e-08 (4.28e-05) |
1.36e-10 (1.1e-07) |
0.000131 (0.0651) |
2.28e-05 (0.0129) |
| Del Peak 18(7q36 3) | 0 (0%) | 435 |
0.333 (1.00) |
0.0623 (1.00) |
9.35e-30 (1.04e-26) |
1.66e-10 (1.33e-07) |
0.0187 (1.00) |
0.000655 (0.291) |
1.29e-18 (1.33e-15) |
5.93e-16 (5.71e-13) |
6.2e-15 (5.84e-12) |
1.81e-15 (1.72e-12) |
8.13e-05 (0.0421) |
2.85e-07 (0.00019) |
| Del Peak 22(10q23 31) | 0 (0%) | 422 |
0.137 (1.00) |
0.0194 (1.00) |
1.2e-29 (1.33e-26) |
4.54e-08 (3.19e-05) |
0.116 (1.00) |
0.796 (1.00) |
3.39e-07 (0.000225) |
1.88e-07 (0.000127) |
1.78e-10 (1.42e-07) |
3.84e-09 (2.89e-06) |
5.44e-06 (0.00328) |
0.000137 (0.0677) |
| Del Peak 23(11p15 5) | 0 (0%) | 399 |
0.379 (1.00) |
0.0902 (1.00) |
7.81e-40 (8.83e-37) |
8.12e-17 (7.96e-14) |
0.452 (1.00) |
0.309 (1.00) |
4.92e-14 (4.52e-11) |
4.77e-16 (4.6e-13) |
1.21e-16 (1.17e-13) |
8.65e-17 (8.47e-14) |
4.99e-06 (0.00302) |
2.23e-06 (0.00139) |
| Del Peak 25(11q25) | 0 (0%) | 408 |
4.75e-28 (5.23e-25) |
1.25e-13 (1.14e-10) |
0.134 (1.00) |
0.804 (1.00) |
3.31e-08 (2.35e-05) |
5.43e-12 (4.71e-09) |
1.14e-12 (1.01e-09) |
1.84e-13 (1.66e-10) |
1.17e-05 (0.00683) |
1.15e-07 (7.84e-05) |
||
| Del Peak 26(12q23 1) | 0 (0%) | 444 |
2.41e-20 (2.54e-17) |
1.72e-10 (1.37e-07) |
0.0349 (1.00) |
0.00949 (1.00) |
3.97e-07 (0.000262) |
1.13e-07 (7.71e-05) |
6.08e-10 (4.75e-07) |
3.6e-13 (3.24e-10) |
4.66e-06 (0.00282) |
1.42e-06 (0.000901) |
||
| Del Peak 27(12q24 33) | 0 (0%) | 433 |
1.03e-25 (1.13e-22) |
3.34e-11 (2.77e-08) |
0.0355 (1.00) |
0.106 (1.00) |
1.07e-11 (9.14e-09) |
2.32e-09 (1.77e-06) |
6.67e-13 (5.94e-10) |
2.94e-14 (2.72e-11) |
1.54e-06 (0.000977) |
1.18e-06 (0.000755) |
||
| Del Peak 30(14q13 1) | 0 (0%) | 430 |
0.00809 (1.00) |
0.00105 (0.448) |
1.28e-22 (1.37e-19) |
1.17e-10 (9.54e-08) |
0.0681 (1.00) |
0.106 (1.00) |
7.68e-09 (5.68e-06) |
1.63e-10 (1.31e-07) |
1.33e-09 (1.03e-06) |
6.18e-12 (5.35e-09) |
9.99e-05 (0.0505) |
6.28e-05 (0.033) |
| Del Peak 31(15q15 1) | 0 (0%) | 368 |
0.0129 (1.00) |
0.00193 (0.791) |
1.37e-55 (1.57e-52) |
2.5e-18 (2.54e-15) |
0.00247 (0.975) |
0.205 (1.00) |
3.76e-17 (3.73e-14) |
8.64e-22 (9.16e-19) |
1.16e-23 (1.24e-20) |
2.75e-22 (2.94e-19) |
1.28e-08 (9.4e-06) |
6.03e-10 (4.72e-07) |
| Del Peak 33(16p13 3) | 0 (0%) | 411 |
0.0129 (1.00) |
0.00193 (0.791) |
1.59e-37 (1.8e-34) |
1.44e-14 (1.35e-11) |
0.0547 (1.00) |
0.176 (1.00) |
8.49e-14 (7.76e-11) |
1.28e-11 (1.09e-08) |
4.79e-16 (4.62e-13) |
9.41e-17 (9.2e-14) |
8.62e-06 (0.00511) |
2.71e-07 (0.000181) |
| Del Peak 40(17q21 2) | 0 (0%) | 391 |
2.35e-05 (0.0132) |
1.13e-06 (0.000726) |
2.03e-48 (2.31e-45) |
1.57e-09 (1.21e-06) |
0.00327 (1.00) |
0.168 (1.00) |
1.38e-14 (1.29e-11) |
7.99e-19 (8.25e-16) |
1.7e-12 (1.49e-09) |
2.46e-11 (2.06e-08) |
0.00166 (0.683) |
0.00131 (0.549) |
| Del Peak 50(Xp21 1) | 0 (0%) | 411 |
0.000567 (0.257) |
4.17e-05 (0.0225) |
4.23e-33 (4.73e-30) |
3.02e-09 (2.28e-06) |
0.00541 (1.00) |
0.244 (1.00) |
1.34e-10 (1.08e-07) |
3.09e-11 (2.58e-08) |
7.15e-12 (6.18e-09) |
4.61e-13 (4.13e-10) |
0.000683 (0.303) |
2.01e-05 (0.0116) |
| Amp Peak 9(3p25 1) | 0 (0%) | 422 |
0.188 (1.00) |
0.247 (1.00) |
4.11e-24 (4.44e-21) |
3.3e-06 (0.00203) |
0.075 (1.00) |
0.438 (1.00) |
6.49e-08 (4.51e-05) |
1.78e-08 (1.29e-05) |
1.06e-06 (0.000683) |
1.45e-06 (0.000917) |
0.00268 (1.00) |
0.000449 (0.208) |
| Amp Peak 27(12p12 1) | 0 (0%) | 411 |
0.327 (1.00) |
0.683 (1.00) |
5.1e-15 (4.81e-12) |
9.11e-08 (6.27e-05) |
0.536 (1.00) |
0.659 (1.00) |
4.17e-05 (0.0225) |
2.11e-05 (0.0121) |
8.04e-08 (5.55e-05) |
1.05e-09 (8.19e-07) |
0.000155 (0.0761) |
0.000579 (0.259) |
| Amp Peak 28(12q13 11) | 0 (0%) | 413 |
0.377 (1.00) |
0.59 (1.00) |
6.74e-17 (6.63e-14) |
2.95e-08 (2.1e-05) |
0.449 (1.00) |
0.157 (1.00) |
2.19e-06 (0.00137) |
1.95e-06 (0.00123) |
1.61e-08 (1.17e-05) |
4.08e-09 (3.07e-06) |
3.87e-05 (0.021) |
0.00147 (0.613) |
| Amp Peak 29(12q13 2) | 0 (0%) | 405 |
0.181 (1.00) |
0.254 (1.00) |
1.75e-17 (1.74e-14) |
1.84e-07 (0.000124) |
0.315 (1.00) |
0.36 (1.00) |
1.66e-08 (1.2e-05) |
6.54e-08 (4.54e-05) |
2.24e-08 (1.61e-05) |
1.83e-10 (1.46e-07) |
5.74e-05 (0.0303) |
0.00285 (1.00) |
| Del Peak 16(7q11 22) | 0 (0%) | 453 |
3.24e-21 (3.42e-18) |
1.93e-07 (0.000129) |
0.0668 (1.00) |
0.00669 (1.00) |
4.89e-09 (3.66e-06) |
1.5e-09 (1.16e-06) |
2.32e-08 (1.66e-05) |
5.09e-08 (3.56e-05) |
0.0053 (1.00) |
0.000145 (0.0717) |
||
| Del Peak 17(7q31 1) | 0 (0%) | 444 |
0.137 (1.00) |
0.0194 (1.00) |
5.75e-27 (6.32e-24) |
2.21e-09 (1.68e-06) |
0.0899 (1.00) |
0.0192 (1.00) |
3.26e-14 (3e-11) |
3.17e-13 (2.86e-10) |
1.27e-11 (1.09e-08) |
1.47e-11 (1.25e-08) |
0.000687 (0.303) |
4.78e-05 (0.0255) |
| Del Peak 24(11q14 1) | 0 (0%) | 429 |
7.36e-22 (7.82e-19) |
1.96e-09 (1.5e-06) |
0.328 (1.00) |
0.393 (1.00) |
2.82e-08 (2.02e-05) |
2.31e-10 (1.84e-07) |
2.34e-10 (1.86e-07) |
1.32e-11 (1.12e-08) |
0.000759 (0.333) |
7.15e-07 (0.000465) |
||
| Del Peak 28(13q11) | 0 (0%) | 406 |
0.333 (1.00) |
0.158 (1.00) |
1.94e-29 (2.14e-26) |
3.17e-09 (2.4e-06) |
0.162 (1.00) |
0.126 (1.00) |
4.78e-07 (0.000314) |
1.7e-11 (1.43e-08) |
1.01e-09 (7.87e-07) |
3.6e-09 (2.72e-06) |
0.00291 (1.00) |
0.000388 (0.181) |
| Del Peak 39(17q11 2) | 0 (0%) | 396 |
0.000567 (0.257) |
4.17e-05 (0.0225) |
6.26e-44 (7.11e-41) |
9.34e-08 (6.42e-05) |
0.013 (1.00) |
0.647 (1.00) |
2.47e-14 (2.28e-11) |
4.51e-17 (4.47e-14) |
2.74e-10 (2.17e-07) |
5.88e-10 (4.61e-07) |
0.00263 (1.00) |
0.00292 (1.00) |
| Del Peak 41(18q23) | 0 (0%) | 401 |
0.617 (1.00) |
0.173 (1.00) |
6.45e-34 (7.23e-31) |
1.23e-11 (1.06e-08) |
0.0427 (1.00) |
0.0354 (1.00) |
4.88e-11 (4.02e-08) |
2.72e-13 (2.46e-10) |
1.6e-12 (1.41e-09) |
4.5e-14 (4.14e-11) |
0.00113 (0.478) |
3.02e-05 (0.0167) |
| Del Peak 46(22q11 1) | 0 (0%) | 411 |
0.00202 (0.814) |
0.000218 (0.106) |
2.26e-29 (2.5e-26) |
9.87e-05 (0.05) |
0.451 (1.00) |
0.796 (1.00) |
1.25e-07 (8.49e-05) |
1.85e-09 (1.42e-06) |
4.79e-07 (0.000314) |
5.37e-05 (0.0284) |
0.187 (1.00) |
0.0545 (1.00) |
| Del Peak 47(22q12 1) | 0 (0%) | 405 |
0.00202 (0.814) |
0.000218 (0.106) |
1.54e-31 (1.71e-28) |
1.84e-05 (0.0106) |
0.267 (1.00) |
0.627 (1.00) |
4.79e-09 (3.59e-06) |
1.31e-11 (1.11e-08) |
1.24e-08 (9.11e-06) |
1.54e-07 (0.000104) |
0.059 (1.00) |
0.023 (1.00) |
| Amp Peak 13(4p16 3) | 0 (0%) | 447 |
0.0515 (1.00) |
0.00755 (1.00) |
1.64e-21 (1.73e-18) |
0.000505 (0.23) |
0.0898 (1.00) |
0.00285 (1.00) |
5.2e-10 (4.08e-07) |
6.95e-11 (5.7e-08) |
6.4e-09 (4.76e-06) |
5.5e-08 (3.84e-05) |
0.00358 (1.00) |
0.00959 (1.00) |
| Amp Peak 17(6q25 1) | 0 (0%) | 416 |
0.284 (1.00) |
0.312 (1.00) |
7.52e-22 (7.98e-19) |
2.7e-06 (0.00167) |
0.318 (1.00) |
0.0698 (1.00) |
4.97e-07 (0.000324) |
1.03e-08 (7.59e-06) |
8.25e-06 (0.00491) |
8.96e-06 (0.00531) |
0.0196 (1.00) |
0.0511 (1.00) |
| Amp Peak 25(11p11 2) | 0 (0%) | 447 |
0.00202 (0.814) |
0.00755 (1.00) |
1.32e-16 (1.28e-13) |
5.34e-05 (0.0284) |
0.0122 (1.00) |
0.789 (1.00) |
2.37e-05 (0.0132) |
9.28e-05 (0.0474) |
1.16e-07 (7.93e-05) |
3.31e-06 (0.00203) |
0.0178 (1.00) |
0.000625 (0.278) |
| Amp Peak 26(11q13 2) | 0 (0%) | 424 |
0.00381 (1.00) |
0.00829 (1.00) |
5.92e-22 (6.3e-19) |
0.000168 (0.0823) |
0.0148 (1.00) |
1 (1.00) |
9.44e-06 (0.00556) |
5.58e-08 (3.89e-05) |
1.11e-07 (7.62e-05) |
5.46e-07 (0.000356) |
0.102 (1.00) |
0.019 (1.00) |
| Amp Peak 31(14q24 3) | 0 (0%) | 436 |
0.0605 (1.00) |
0.0951 (1.00) |
6.04e-18 (6.07e-15) |
3.15e-05 (0.0173) |
0.153 (1.00) |
0.393 (1.00) |
4.85e-08 (3.39e-05) |
1.14e-10 (9.32e-08) |
3.83e-08 (2.71e-05) |
1.56e-08 (1.13e-05) |
0.0542 (1.00) |
0.00238 (0.943) |
| Amp Peak 32(14q32 33) | 0 (0%) | 422 |
0.596 (1.00) |
0.468 (1.00) |
4.26e-22 (4.54e-19) |
9.51e-07 (0.000614) |
0.426 (1.00) |
0.789 (1.00) |
3.54e-05 (0.0193) |
4.77e-08 (3.35e-05) |
3.19e-08 (2.27e-05) |
2.09e-09 (1.59e-06) |
0.0349 (1.00) |
0.00578 (1.00) |
| Amp Peak 33(16p11 2) | 0 (0%) | 437 |
0.00809 (1.00) |
0.00105 (0.448) |
5.49e-21 (5.79e-18) |
3.15e-05 (0.0173) |
0.138 (1.00) |
0.126 (1.00) |
1.31e-09 (1.01e-06) |
1.78e-09 (1.37e-06) |
4.87e-10 (3.83e-07) |
3.63e-09 (2.74e-06) |
0.00373 (1.00) |
0.000819 (0.356) |
| Del Peak 5(2q22 1) | 0 (0%) | 448 |
0.00809 (1.00) |
0.00105 (0.448) |
2.7e-20 (2.83e-17) |
0.000159 (0.0781) |
0.0907 (1.00) |
0.0831 (1.00) |
1.55e-08 (1.13e-05) |
7.77e-08 (5.38e-05) |
1.62e-07 (0.00011) |
2.01e-05 (0.0115) |
0.00529 (1.00) |
0.06 (1.00) |
| Del Peak 6(2q37 3) | 0 (0%) | 443 |
7.94e-17 (7.79e-14) |
0.000128 (0.0635) |
0.276 (1.00) |
0.507 (1.00) |
1.36e-05 (0.00794) |
1.43e-06 (0.000906) |
0.000248 (0.118) |
0.000461 (0.211) |
0.0663 (1.00) |
0.103 (1.00) |
||
| Del Peak 20(9p23) | 0 (0%) | 427 |
0.379 (1.00) |
0.0902 (1.00) |
1.01e-22 (1.08e-19) |
1.65e-06 (0.00104) |
0.0369 (1.00) |
0.295 (1.00) |
1.93e-07 (0.000129) |
1.29e-09 (1e-06) |
8.17e-08 (5.63e-05) |
1.89e-06 (0.00119) |
0.0728 (1.00) |
0.0148 (1.00) |
| Del Peak 29(13q14 2) | 0 (0%) | 398 |
0.617 (1.00) |
0.301 (1.00) |
2.43e-32 (2.71e-29) |
4.08e-08 (2.88e-05) |
0.0746 (1.00) |
0.102 (1.00) |
1.16e-06 (0.000744) |
9.57e-11 (7.81e-08) |
3.77e-08 (2.68e-05) |
1.02e-08 (7.49e-06) |
0.0228 (1.00) |
0.00215 (0.855) |
| Del Peak 43(19p12) | 0 (0%) | 443 |
1.3e-15 (1.25e-12) |
9.09e-07 (0.000588) |
0.21 (1.00) |
0.507 (1.00) |
2.14e-05 (0.0122) |
3.98e-06 (0.00243) |
3.04e-06 (0.00187) |
1.98e-06 (0.00124) |
0.000921 (0.397) |
0.00244 (0.967) |
||
| Amp Peak 15(5q35 3) | 0 (0%) | 444 |
0.137 (1.00) |
0.0194 (1.00) |
8.67e-20 (9.05e-17) |
0.000594 (0.266) |
0.237 (1.00) |
0.731 (1.00) |
3.18e-07 (0.000211) |
6.98e-05 (0.0364) |
1.92e-07 (0.000129) |
2.69e-06 (0.00167) |
0.0117 (1.00) |
0.00129 (0.544) |
| Amp Peak 23(9q34 3) | 0 (0%) | 460 |
0.243 (1.00) |
0.158 (1.00) |
3.79e-12 (3.3e-09) |
8.04e-05 (0.0417) |
0.336 (1.00) |
0.507 (1.00) |
2.14e-05 (0.0122) |
3.98e-06 (0.00243) |
0.000604 (0.269) |
0.00012 (0.0598) |
0.0158 (1.00) |
0.0138 (1.00) |
| Amp Peak 3(1p22 3) | 0 (0%) | 411 |
0.0196 (1.00) |
0.0156 (1.00) |
1.91e-08 (1.38e-05) |
0.0162 (1.00) |
0.737 (1.00) |
0.28 (1.00) |
0.00612 (1.00) |
0.0107 (1.00) |
5.96e-06 (0.00358) |
2.27e-05 (0.0128) |
0.00286 (1.00) |
1.53e-05 (0.0089) |
| Amp Peak 4(1q21 3) | 0 (0%) | 272 |
0.0223 (1.00) |
0.0543 (1.00) |
1.7e-13 (1.54e-10) |
0.0153 (1.00) |
0.317 (1.00) |
0.135 (1.00) |
0.011 (1.00) |
0.0901 (1.00) |
2.19e-05 (0.0124) |
8.35e-05 (0.043) |
0.0856 (1.00) |
2.92e-05 (0.0162) |
| Amp Peak 5(1q22) | 0 (0%) | 260 |
0.0223 (1.00) |
0.0543 (1.00) |
4.26e-15 (4.03e-12) |
0.000575 (0.259) |
0.132 (1.00) |
0.179 (1.00) |
0.0112 (1.00) |
0.0445 (1.00) |
3.55e-05 (0.0193) |
2.29e-05 (0.0129) |
0.124 (1.00) |
3.79e-05 (0.0206) |
| Amp Peak 10(3p14 1) | 0 (0%) | 436 |
0.536 (1.00) |
1 (1.00) |
7.51e-20 (7.85e-17) |
0.000728 (0.321) |
0.0521 (1.00) |
0.373 (1.00) |
3.18e-05 (0.0174) |
2.55e-05 (0.0142) |
0.000503 (0.23) |
0.000576 (0.259) |
0.0456 (1.00) |
0.0115 (1.00) |
| Amp Peak 19(8p11 21) | 0 (0%) | 346 |
0.0106 (1.00) |
0.0143 (1.00) |
1.7e-23 (1.83e-20) |
0.00985 (1.00) |
0.00111 (0.471) |
0.719 (1.00) |
0.000553 (0.251) |
2.25e-05 (0.0127) |
6.37e-05 (0.0334) |
0.000301 (0.143) |
0.00903 (1.00) |
0.0124 (1.00) |
| Del Peak 4(2p25 3) | 0 (0%) | 468 |
6.48e-09 (4.81e-06) |
0.000516 (0.235) |
0.268 (1.00) |
0.652 (1.00) |
8.8e-05 (0.0452) |
0.000323 (0.153) |
0.00149 (0.619) |
0.00247 (0.975) |
0.343 (1.00) |
0.323 (1.00) |
||
| Del Peak 8(3q13 31) | 0 (0%) | 464 |
0.379 (1.00) |
0.0902 (1.00) |
1.44e-12 (1.27e-09) |
0.00495 (1.00) |
0.0559 (1.00) |
1 (1.00) |
0.000246 (0.117) |
0.000744 (0.327) |
2.07e-06 (0.00129) |
7.27e-06 (0.00435) |
0.0515 (1.00) |
0.0563 (1.00) |
| Amp Peak 6(1q42 3) | 0 (0%) | 289 |
0.0502 (1.00) |
0.186 (1.00) |
1.74e-07 (0.000117) |
0.221 (1.00) |
0.631 (1.00) |
0.0696 (1.00) |
0.0321 (1.00) |
0.0775 (1.00) |
0.00119 (0.503) |
0.359 (1.00) |
0.813 (1.00) |
0.00662 (1.00) |
| Amp Peak 18(7q22 1) | 0 (0%) | 410 |
0.678 (1.00) |
0.744 (1.00) |
5.12e-20 (5.36e-17) |
0.00698 (1.00) |
0.74 (1.00) |
1 (1.00) |
0.00365 (1.00) |
0.0317 (1.00) |
0.00153 (0.634) |
0.00391 (1.00) |
0.0641 (1.00) |
0.0384 (1.00) |
| Amp Peak 24(10q22 2) | 0 (0%) | 360 |
0.0321 (1.00) |
0.0871 (1.00) |
1.77e-08 (1.28e-05) |
0.328 (1.00) |
0.273 (1.00) |
0.414 (1.00) |
0.276 (1.00) |
0.0148 (1.00) |
0.325 (1.00) |
0.198 (1.00) |
0.224 (1.00) |
0.321 (1.00) |
| Amp Peak 47(Xp11 23) | 0 (0%) | 408 |
0.355 (1.00) |
0.683 (1.00) |
1.88e-25 (2.05e-22) |
0.00779 (1.00) |
0.783 (1.00) |
0.399 (1.00) |
0.155 (1.00) |
0.134 (1.00) |
0.000995 (0.427) |
0.00856 (1.00) |
0.0469 (1.00) |
0.0159 (1.00) |
| Amp Peak 48(Xq28) | 0 (0%) | 407 |
0.159 (1.00) |
0.0339 (1.00) |
4.98e-24 (5.38e-21) |
0.0237 (1.00) |
0.128 (1.00) |
0.535 (1.00) |
0.118 (1.00) |
0.202 (1.00) |
0.00332 (1.00) |
0.0421 (1.00) |
0.231 (1.00) |
0.395 (1.00) |
| Del Peak 45(20p12 1) | 0 (0%) | 462 |
1 (1.00) |
0.491 (1.00) |
0.000182 (0.0885) |
0.0756 (1.00) |
0.0877 (1.00) |
0.507 (1.00) |
0.101 (1.00) |
0.00996 (1.00) |
0.0183 (1.00) |
0.0258 (1.00) |
0.518 (1.00) |
0.202 (1.00) |
| Del Peak 3(1q43) | 0 (0%) | 483 |
0.00131 (0.55) |
0.155 (1.00) |
0.376 (1.00) |
0.00486 (1.00) |
0.0431 (1.00) |
0.172 (1.00) |
0.115 (1.00) |
0.408 (1.00) |
0.219 (1.00) |
P value = 3.5e-20 (Chi-square test), Q value = 3.7e-17
Table S1. Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 1(1P35.2) CNV | 0 | 7 | 42 | 1 | 0 |
| AMP PEAK 1(1P35.2) WILD-TYPE | 290 | 33 | 97 | 16 | 6 |
Figure S1. Get High-res Image Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.46e-07 (Fisher's exact test), Q value = 0.00029
Table S2. Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 1(1P35.2) CNV | 31 | 4 | 5 |
| AMP PEAK 1(1P35.2) WILD-TYPE | 112 | 80 | 145 |
Figure S2. Get High-res Image Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1e-04 (Chi-square test), Q value = 0.051
Table S3. Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 41 | 37 | 39 | 12 | 41 | 24 |
| AMP PEAK 1(1P35.2) CNV | 1 | 10 | 2 | 0 | 0 | 2 |
| AMP PEAK 1(1P35.2) WILD-TYPE | 40 | 27 | 37 | 12 | 41 | 22 |
Figure S3. Get High-res Image Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1.22e-09 (Fisher's exact test), Q value = 9.5e-07
Table S4. Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 1(1P35.2) CNV | 27 | 1 | 1 |
| AMP PEAK 1(1P35.2) WILD-TYPE | 115 | 106 | 112 |
Figure S4. Get High-res Image Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 8.4e-12 (Fisher's exact test), Q value = 7.2e-09
Table S5. Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 1(1P35.2) CNV | 0 | 0 | 0 | 29 |
| AMP PEAK 1(1P35.2) WILD-TYPE | 65 | 92 | 65 | 111 |
Figure S5. Get High-res Image Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.89e-08 (Fisher's exact test), Q value = 4.8e-05
Table S6. Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 1(1P35.2) CNV | 39 | 6 | 3 |
| AMP PEAK 1(1P35.2) WILD-TYPE | 168 | 138 | 129 |
Figure S6. Get High-res Image Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.68e-09 (Fisher's exact test), Q value = 2e-06
Table S7. Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 1(1P35.2) CNV | 5 | 2 | 2 | 39 |
| AMP PEAK 1(1P35.2) WILD-TYPE | 188 | 77 | 25 | 145 |
Figure S7. Get High-res Image Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000421 (Fisher's exact test), Q value = 0.2
Table S8. Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 1(1P35.2) CNV | 30 | 5 | 4 |
| AMP PEAK 1(1P35.2) WILD-TYPE | 139 | 111 | 70 |
Figure S8. Get High-res Image Gene #1: 'Amp Peak 1(1p35.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.06e-28 (Chi-square test), Q value = 2.3e-25
Table S9. Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 2(1P34.2) CNV | 1 | 5 | 56 | 1 | 0 |
| AMP PEAK 2(1P34.2) WILD-TYPE | 289 | 35 | 83 | 16 | 6 |
Figure S9. Get High-res Image Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.13e-08 (Fisher's exact test), Q value = 8.3e-06
Table S10. Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 2(1P34.2) CNV | 37 | 12 | 4 |
| AMP PEAK 2(1P34.2) WILD-TYPE | 106 | 72 | 146 |
Figure S10. Get High-res Image Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 7.8e-12 (Fisher's exact test), Q value = 6.7e-09
Table S11. Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 2(1P34.2) CNV | 34 | 2 | 1 |
| AMP PEAK 2(1P34.2) WILD-TYPE | 108 | 105 | 112 |
Figure S11. Get High-res Image Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.95e-14 (Fisher's exact test), Q value = 4.5e-11
Table S12. Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 2(1P34.2) CNV | 0 | 0 | 1 | 36 |
| AMP PEAK 2(1P34.2) WILD-TYPE | 65 | 92 | 64 | 104 |
Figure S12. Get High-res Image Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.27e-15 (Fisher's exact test), Q value = 1.2e-12
Table S13. Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 2(1P34.2) CNV | 55 | 4 | 2 |
| AMP PEAK 2(1P34.2) WILD-TYPE | 152 | 140 | 130 |
Figure S13. Get High-res Image Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 9.99e-16 (Fisher's exact test), Q value = 9.6e-13
Table S14. Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 2(1P34.2) CNV | 4 | 2 | 2 | 53 |
| AMP PEAK 2(1P34.2) WILD-TYPE | 189 | 77 | 25 | 131 |
Figure S14. Get High-res Image Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.1e-06 (Fisher's exact test), Q value = 0.0025
Table S15. Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 2(1P34.2) CNV | 39 | 4 | 8 |
| AMP PEAK 2(1P34.2) WILD-TYPE | 130 | 112 | 66 |
Figure S15. Get High-res Image Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.79e-06 (Fisher's exact test), Q value = 0.0011
Table S16. Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 2(1P34.2) CNV | 4 | 44 | 3 |
| AMP PEAK 2(1P34.2) WILD-TYPE | 113 | 153 | 42 |
Figure S16. Get High-res Image Gene #2: 'Amp Peak 2(1p34.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.91e-08 (Chi-square test), Q value = 1.4e-05
Table S17. Gene #3: 'Amp Peak 3(1p22.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 3(1P22.3) CNV | 30 | 5 | 39 | 2 | 5 |
| AMP PEAK 3(1P22.3) WILD-TYPE | 260 | 35 | 100 | 15 | 1 |
Figure S17. Get High-res Image Gene #3: 'Amp Peak 3(1p22.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5.96e-06 (Fisher's exact test), Q value = 0.0036
Table S18. Gene #3: 'Amp Peak 3(1p22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 3(1P22.3) CNV | 46 | 7 | 27 |
| AMP PEAK 3(1P22.3) WILD-TYPE | 161 | 137 | 105 |
Figure S18. Get High-res Image Gene #3: 'Amp Peak 3(1p22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.27e-05 (Fisher's exact test), Q value = 0.013
Table S19. Gene #3: 'Amp Peak 3(1p22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 3(1P22.3) CNV | 18 | 18 | 0 | 44 |
| AMP PEAK 3(1P22.3) WILD-TYPE | 175 | 61 | 27 | 140 |
Figure S19. Get High-res Image Gene #3: 'Amp Peak 3(1p22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.53e-05 (Fisher's exact test), Q value = 0.0089
Table S20. Gene #3: 'Amp Peak 3(1p22.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 3(1P22.3) CNV | 11 | 49 | 1 |
| AMP PEAK 3(1P22.3) WILD-TYPE | 106 | 148 | 44 |
Figure S20. Get High-res Image Gene #3: 'Amp Peak 3(1p22.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.7e-13 (Chi-square test), Q value = 1.5e-10
Table S21. Gene #4: 'Amp Peak 4(1q21.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 4(1Q21.3) CNV | 87 | 26 | 88 | 13 | 6 |
| AMP PEAK 4(1Q21.3) WILD-TYPE | 203 | 14 | 51 | 4 | 0 |
Figure S21. Get High-res Image Gene #4: 'Amp Peak 4(1q21.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.19e-05 (Fisher's exact test), Q value = 0.012
Table S22. Gene #4: 'Amp Peak 4(1q21.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 4(1Q21.3) CNV | 110 | 42 | 65 |
| AMP PEAK 4(1Q21.3) WILD-TYPE | 97 | 102 | 67 |
Figure S22. Get High-res Image Gene #4: 'Amp Peak 4(1q21.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 8.35e-05 (Fisher's exact test), Q value = 0.043
Table S23. Gene #4: 'Amp Peak 4(1q21.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 4(1Q21.3) CNV | 71 | 33 | 7 | 106 |
| AMP PEAK 4(1Q21.3) WILD-TYPE | 122 | 46 | 20 | 78 |
Figure S23. Get High-res Image Gene #4: 'Amp Peak 4(1q21.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.92e-05 (Fisher's exact test), Q value = 0.016
Table S24. Gene #4: 'Amp Peak 4(1q21.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 4(1Q21.3) CNV | 44 | 109 | 10 |
| AMP PEAK 4(1Q21.3) WILD-TYPE | 73 | 88 | 35 |
Figure S24. Get High-res Image Gene #4: 'Amp Peak 4(1q21.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4.26e-15 (Chi-square test), Q value = 4e-12
Table S25. Gene #5: 'Amp Peak 5(1q22)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 5(1Q22) CNV | 91 | 26 | 96 | 13 | 6 |
| AMP PEAK 5(1Q22) WILD-TYPE | 199 | 14 | 43 | 4 | 0 |
Figure S25. Get High-res Image Gene #5: 'Amp Peak 5(1q22)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.55e-05 (Fisher's exact test), Q value = 0.019
Table S26. Gene #5: 'Amp Peak 5(1q22)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 5(1Q22) CNV | 115 | 46 | 68 |
| AMP PEAK 5(1Q22) WILD-TYPE | 92 | 98 | 64 |
Figure S26. Get High-res Image Gene #5: 'Amp Peak 5(1q22)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.29e-05 (Fisher's exact test), Q value = 0.013
Table S27. Gene #5: 'Amp Peak 5(1q22)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 5(1Q22) CNV | 76 | 34 | 7 | 112 |
| AMP PEAK 5(1Q22) WILD-TYPE | 117 | 45 | 20 | 72 |
Figure S27. Get High-res Image Gene #5: 'Amp Peak 5(1q22)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.79e-05 (Fisher's exact test), Q value = 0.021
Table S28. Gene #5: 'Amp Peak 5(1q22)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 5(1Q22) CNV | 48 | 114 | 11 |
| AMP PEAK 5(1Q22) WILD-TYPE | 69 | 83 | 34 |
Figure S28. Get High-res Image Gene #5: 'Amp Peak 5(1q22)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.74e-07 (Chi-square test), Q value = 0.00012
Table S29. Gene #6: 'Amp Peak 6(1q42.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 6(1Q42.3) CNV | 90 | 24 | 72 | 11 | 6 |
| AMP PEAK 6(1Q42.3) WILD-TYPE | 200 | 16 | 67 | 6 | 0 |
Figure S29. Get High-res Image Gene #6: 'Amp Peak 6(1q42.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5.04e-28 (Chi-square test), Q value = 5.5e-25
Table S30. Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 7(2P23.2) CNV | 14 | 23 | 67 | 6 | 1 |
| AMP PEAK 7(2P23.2) WILD-TYPE | 276 | 17 | 72 | 11 | 5 |
Figure S30. Get High-res Image Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.42e-10 (Fisher's exact test), Q value = 1.1e-07
Table S31. Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 7(2P23.2) CNV | 59 | 13 | 14 |
| AMP PEAK 7(2P23.2) WILD-TYPE | 84 | 71 | 136 |
Figure S31. Get High-res Image Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.63e-06 (Fisher's exact test), Q value = 0.0022
Table S32. Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 7(2P23.2) CNV | 46 | 10 | 14 |
| AMP PEAK 7(2P23.2) WILD-TYPE | 96 | 97 | 99 |
Figure S32. Get High-res Image Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5.02e-06 (Fisher's exact test), Q value = 0.003
Table S33. Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 7(2P23.2) CNV | 8 | 7 | 9 | 46 |
| AMP PEAK 7(2P23.2) WILD-TYPE | 57 | 85 | 56 | 94 |
Figure S33. Get High-res Image Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.18e-09 (Fisher's exact test), Q value = 9.2e-07
Table S34. Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 7(2P23.2) CNV | 76 | 17 | 16 |
| AMP PEAK 7(2P23.2) WILD-TYPE | 131 | 127 | 116 |
Figure S34. Get High-res Image Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.91e-10 (Fisher's exact test), Q value = 3.1e-07
Table S35. Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 7(2P23.2) CNV | 22 | 10 | 5 | 72 |
| AMP PEAK 7(2P23.2) WILD-TYPE | 171 | 69 | 22 | 112 |
Figure S35. Get High-res Image Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 8.48e-06 (Fisher's exact test), Q value = 0.005
Table S36. Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 7(2P23.2) CNV | 51 | 10 | 23 |
| AMP PEAK 7(2P23.2) WILD-TYPE | 118 | 106 | 51 |
Figure S36. Get High-res Image Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.23e-07 (Fisher's exact test), Q value = 8.4e-05
Table S37. Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 7(2P23.2) CNV | 11 | 68 | 5 |
| AMP PEAK 7(2P23.2) WILD-TYPE | 106 | 129 | 40 |
Figure S37. Get High-res Image Gene #7: 'Amp Peak 7(2p23.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.77e-33 (Chi-square test), Q value = 3.1e-30
Table S38. Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 8(2Q13) CNV | 8 | 19 | 74 | 5 | 1 |
| AMP PEAK 8(2Q13) WILD-TYPE | 282 | 21 | 65 | 12 | 5 |
Figure S38. Get High-res Image Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.58e-12 (Fisher's exact test), Q value = 1.4e-09
Table S39. Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 8(2Q13) CNV | 58 | 16 | 9 |
| AMP PEAK 8(2Q13) WILD-TYPE | 85 | 68 | 141 |
Figure S39. Get High-res Image Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8.42e-11 (Fisher's exact test), Q value = 6.9e-08
Table S40. Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 8(2Q13) CNV | 50 | 7 | 8 |
| AMP PEAK 8(2Q13) WILD-TYPE | 92 | 100 | 105 |
Figure S40. Get High-res Image Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.53e-10 (Fisher's exact test), Q value = 1.2e-07
Table S41. Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 8(2Q13) CNV | 6 | 5 | 4 | 50 |
| AMP PEAK 8(2Q13) WILD-TYPE | 59 | 87 | 61 | 90 |
Figure S41. Get High-res Image Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.47e-18 (Fisher's exact test), Q value = 2.5e-15
Table S42. Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 8(2Q13) CNV | 85 | 10 | 10 |
| AMP PEAK 8(2Q13) WILD-TYPE | 122 | 134 | 122 |
Figure S42. Get High-res Image Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.16e-17 (Fisher's exact test), Q value = 1.2e-14
Table S43. Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 8(2Q13) CNV | 15 | 8 | 2 | 80 |
| AMP PEAK 8(2Q13) WILD-TYPE | 178 | 71 | 25 | 104 |
Figure S43. Get High-res Image Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.95e-08 (Fisher's exact test), Q value = 1.4e-05
Table S44. Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 8(2Q13) CNV | 54 | 6 | 21 |
| AMP PEAK 8(2Q13) WILD-TYPE | 115 | 110 | 53 |
Figure S44. Get High-res Image Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.48e-11 (Fisher's exact test), Q value = 1.3e-08
Table S45. Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 8(2Q13) CNV | 8 | 71 | 2 |
| AMP PEAK 8(2Q13) WILD-TYPE | 109 | 126 | 43 |
Figure S45. Get High-res Image Gene #8: 'Amp Peak 8(2q13)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4.11e-24 (Chi-square test), Q value = 4.4e-21
Table S46. Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 9(3P25.1) CNV | 4 | 5 | 50 | 9 | 2 |
| AMP PEAK 9(3P25.1) WILD-TYPE | 286 | 35 | 89 | 8 | 4 |
Figure S46. Get High-res Image Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.3e-06 (Fisher's exact test), Q value = 0.002
Table S47. Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 9(3P25.1) CNV | 35 | 14 | 7 |
| AMP PEAK 9(3P25.1) WILD-TYPE | 108 | 70 | 143 |
Figure S47. Get High-res Image Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 6.49e-08 (Fisher's exact test), Q value = 4.5e-05
Table S48. Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 9(3P25.1) CNV | 35 | 7 | 3 |
| AMP PEAK 9(3P25.1) WILD-TYPE | 107 | 100 | 110 |
Figure S48. Get High-res Image Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.78e-08 (Fisher's exact test), Q value = 1.3e-05
Table S49. Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 9(3P25.1) CNV | 0 | 3 | 8 | 34 |
| AMP PEAK 9(3P25.1) WILD-TYPE | 65 | 89 | 57 | 106 |
Figure S49. Get High-res Image Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.06e-06 (Fisher's exact test), Q value = 0.00068
Table S50. Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 9(3P25.1) CNV | 49 | 11 | 8 |
| AMP PEAK 9(3P25.1) WILD-TYPE | 158 | 133 | 124 |
Figure S50. Get High-res Image Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.45e-06 (Fisher's exact test), Q value = 0.00092
Table S51. Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 9(3P25.1) CNV | 12 | 6 | 5 | 45 |
| AMP PEAK 9(3P25.1) WILD-TYPE | 181 | 73 | 22 | 139 |
Figure S51. Get High-res Image Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000449 (Fisher's exact test), Q value = 0.21
Table S52. Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 9(3P25.1) CNV | 7 | 43 | 6 |
| AMP PEAK 9(3P25.1) WILD-TYPE | 110 | 154 | 39 |
Figure S52. Get High-res Image Gene #9: 'Amp Peak 9(3p25.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 7.51e-20 (Chi-square test), Q value = 7.8e-17
Table S53. Gene #10: 'Amp Peak 10(3p14.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 10(3P14.1) CNV | 4 | 5 | 35 | 10 | 2 |
| AMP PEAK 10(3P14.1) WILD-TYPE | 286 | 35 | 104 | 7 | 4 |
Figure S53. Get High-res Image Gene #10: 'Amp Peak 10(3p14.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.18e-05 (Fisher's exact test), Q value = 0.017
Table S54. Gene #10: 'Amp Peak 10(3p14.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 10(3P14.1) CNV | 25 | 7 | 2 |
| AMP PEAK 10(3P14.1) WILD-TYPE | 117 | 100 | 111 |
Figure S54. Get High-res Image Gene #10: 'Amp Peak 10(3p14.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.55e-05 (Fisher's exact test), Q value = 0.014
Table S55. Gene #10: 'Amp Peak 10(3p14.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 10(3P14.1) CNV | 0 | 3 | 7 | 24 |
| AMP PEAK 10(3P14.1) WILD-TYPE | 65 | 89 | 58 | 116 |
Figure S55. Get High-res Image Gene #10: 'Amp Peak 10(3p14.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.000503 (Fisher's exact test), Q value = 0.23
Table S56. Gene #10: 'Amp Peak 10(3p14.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 10(3P14.1) CNV | 37 | 11 | 7 |
| AMP PEAK 10(3P14.1) WILD-TYPE | 170 | 133 | 125 |
Figure S56. Get High-res Image Gene #10: 'Amp Peak 10(3p14.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5.91e-05 (Fisher's exact test), Q value = 0.031
Table S57. Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 14 | 17 | 12 | 10 |
| AMP PEAK 11(3Q26.2) CNV | 1 | 11 | 1 | 0 |
| AMP PEAK 11(3Q26.2) WILD-TYPE | 13 | 6 | 11 | 10 |
Figure S57. Get High-res Image Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 5.43e-05 (Fisher's exact test), Q value = 0.029
Table S58. Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| AMP PEAK 11(3Q26.2) CNV | 2 | 1 | 10 |
| AMP PEAK 11(3Q26.2) WILD-TYPE | 17 | 18 | 5 |
Figure S58. Get High-res Image Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 3.77e-61 (Chi-square test), Q value = 4.4e-58
Table S59. Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 11(3Q26.2) CNV | 13 | 10 | 116 | 12 | 4 |
| AMP PEAK 11(3Q26.2) WILD-TYPE | 277 | 30 | 23 | 5 | 2 |
Figure S59. Get High-res Image Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.73e-17 (Fisher's exact test), Q value = 1.7e-14
Table S60. Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 11(3Q26.2) CNV | 86 | 24 | 19 |
| AMP PEAK 11(3Q26.2) WILD-TYPE | 57 | 60 | 131 |
Figure S60. Get High-res Image Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.000353 (Chi-square test), Q value = 0.17
Table S61. Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 41 | 37 | 39 | 12 | 41 | 24 |
| AMP PEAK 11(3Q26.2) CNV | 11 | 15 | 4 | 1 | 1 | 6 |
| AMP PEAK 11(3Q26.2) WILD-TYPE | 30 | 22 | 35 | 11 | 40 | 18 |
Figure S61. Get High-res Image Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1.91e-25 (Fisher's exact test), Q value = 2.1e-22
Table S62. Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 11(3Q26.2) CNV | 80 | 12 | 4 |
| AMP PEAK 11(3Q26.2) WILD-TYPE | 62 | 95 | 109 |
Figure S62. Get High-res Image Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.67e-25 (Fisher's exact test), Q value = 4e-22
Table S63. Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 11(3Q26.2) CNV | 0 | 6 | 12 | 78 |
| AMP PEAK 11(3Q26.2) WILD-TYPE | 65 | 86 | 53 | 62 |
Figure S63. Get High-res Image Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5.62e-26 (Fisher's exact test), Q value = 6.1e-23
Table S64. Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 11(3Q26.2) CNV | 118 | 21 | 12 |
| AMP PEAK 11(3Q26.2) WILD-TYPE | 89 | 123 | 120 |
Figure S64. Get High-res Image Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.4e-24 (Fisher's exact test), Q value = 3.7e-21
Table S65. Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 11(3Q26.2) CNV | 25 | 10 | 7 | 109 |
| AMP PEAK 11(3Q26.2) WILD-TYPE | 168 | 69 | 20 | 75 |
Figure S65. Get High-res Image Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.96e-07 (Fisher's exact test), Q value = 0.00039
Table S66. Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 11(3Q26.2) CNV | 80 | 20 | 26 |
| AMP PEAK 11(3Q26.2) WILD-TYPE | 89 | 96 | 48 |
Figure S66. Get High-res Image Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.37e-08 (Fisher's exact test), Q value = 1e-05
Table S67. Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 11(3Q26.2) CNV | 19 | 95 | 12 |
| AMP PEAK 11(3Q26.2) WILD-TYPE | 98 | 102 | 33 |
Figure S67. Get High-res Image Gene #11: 'Amp Peak 11(3q26.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000342 (Fisher's exact test), Q value = 0.16
Table S68. Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 14 | 17 | 12 | 10 |
| AMP PEAK 12(3Q26.2) CNV | 1 | 10 | 1 | 0 |
| AMP PEAK 12(3Q26.2) WILD-TYPE | 13 | 7 | 11 | 10 |
Figure S68. Get High-res Image Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 0.000377 (Fisher's exact test), Q value = 0.18
Table S69. Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| AMP PEAK 12(3Q26.2) CNV | 2 | 1 | 9 |
| AMP PEAK 12(3Q26.2) WILD-TYPE | 17 | 18 | 6 |
Figure S69. Get High-res Image Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 8.96e-60 (Chi-square test), Q value = 1e-56
Table S70. Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 12(3Q26.2) CNV | 9 | 9 | 110 | 12 | 4 |
| AMP PEAK 12(3Q26.2) WILD-TYPE | 281 | 31 | 29 | 5 | 2 |
Figure S70. Get High-res Image Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 7.58e-19 (Fisher's exact test), Q value = 7.8e-16
Table S71. Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 12(3Q26.2) CNV | 84 | 20 | 16 |
| AMP PEAK 12(3Q26.2) WILD-TYPE | 59 | 64 | 134 |
Figure S71. Get High-res Image Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.89e-25 (Fisher's exact test), Q value = 2.1e-22
Table S72. Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 12(3Q26.2) CNV | 78 | 10 | 4 |
| AMP PEAK 12(3Q26.2) WILD-TYPE | 64 | 97 | 109 |
Figure S72. Get High-res Image Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 7.53e-26 (Fisher's exact test), Q value = 8.2e-23
Table S73. Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 12(3Q26.2) CNV | 0 | 5 | 10 | 77 |
| AMP PEAK 12(3Q26.2) WILD-TYPE | 65 | 87 | 55 | 63 |
Figure S73. Get High-res Image Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.1e-23 (Fisher's exact test), Q value = 1.2e-20
Table S74. Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 12(3Q26.2) CNV | 110 | 18 | 12 |
| AMP PEAK 12(3Q26.2) WILD-TYPE | 97 | 126 | 120 |
Figure S74. Get High-res Image Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 9.82e-25 (Fisher's exact test), Q value = 1.1e-21
Table S75. Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 12(3Q26.2) CNV | 20 | 9 | 7 | 104 |
| AMP PEAK 12(3Q26.2) WILD-TYPE | 173 | 70 | 20 | 80 |
Figure S75. Get High-res Image Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.64e-08 (Fisher's exact test), Q value = 1.9e-05
Table S76. Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 12(3Q26.2) CNV | 76 | 15 | 25 |
| AMP PEAK 12(3Q26.2) WILD-TYPE | 93 | 101 | 49 |
Figure S76. Get High-res Image Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 5.76e-11 (Fisher's exact test), Q value = 4.7e-08
Table S77. Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 12(3Q26.2) CNV | 15 | 93 | 8 |
| AMP PEAK 12(3Q26.2) WILD-TYPE | 102 | 104 | 37 |
Figure S77. Get High-res Image Gene #12: 'Amp Peak 12(3q26.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.64e-21 (Chi-square test), Q value = 1.7e-18
Table S78. Gene #13: 'Amp Peak 13(4p16.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 13(4P16.3) CNV | 2 | 1 | 42 | 0 | 0 |
| AMP PEAK 13(4P16.3) WILD-TYPE | 288 | 39 | 97 | 17 | 6 |
Figure S78. Get High-res Image Gene #13: 'Amp Peak 13(4p16.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.000505 (Fisher's exact test), Q value = 0.23
Table S79. Gene #13: 'Amp Peak 13(4p16.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 13(4P16.3) CNV | 21 | 10 | 4 |
| AMP PEAK 13(4P16.3) WILD-TYPE | 122 | 74 | 146 |
Figure S79. Get High-res Image Gene #13: 'Amp Peak 13(4p16.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 5.2e-10 (Fisher's exact test), Q value = 4.1e-07
Table S80. Gene #13: 'Amp Peak 13(4p16.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 13(4P16.3) CNV | 28 | 1 | 1 |
| AMP PEAK 13(4P16.3) WILD-TYPE | 114 | 106 | 112 |
Figure S80. Get High-res Image Gene #13: 'Amp Peak 13(4p16.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6.95e-11 (Fisher's exact test), Q value = 5.7e-08
Table S81. Gene #13: 'Amp Peak 13(4p16.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 13(4P16.3) CNV | 1 | 0 | 0 | 29 |
| AMP PEAK 13(4P16.3) WILD-TYPE | 64 | 92 | 65 | 111 |
Figure S81. Get High-res Image Gene #13: 'Amp Peak 13(4p16.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.4e-09 (Fisher's exact test), Q value = 4.8e-06
Table S82. Gene #13: 'Amp Peak 13(4p16.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 13(4P16.3) CNV | 37 | 4 | 2 |
| AMP PEAK 13(4P16.3) WILD-TYPE | 170 | 140 | 130 |
Figure S82. Get High-res Image Gene #13: 'Amp Peak 13(4p16.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5.5e-08 (Fisher's exact test), Q value = 3.8e-05
Table S83. Gene #13: 'Amp Peak 13(4p16.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 13(4P16.3) CNV | 5 | 2 | 1 | 35 |
| AMP PEAK 13(4P16.3) WILD-TYPE | 188 | 77 | 26 | 149 |
Figure S83. Get High-res Image Gene #13: 'Amp Peak 13(4p16.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.71e-32 (Chi-square test), Q value = 5.3e-29
Table S84. Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 14(5P15.33) CNV | 4 | 5 | 66 | 1 | 1 |
| AMP PEAK 14(5P15.33) WILD-TYPE | 286 | 35 | 73 | 16 | 5 |
Figure S84. Get High-res Image Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.89e-12 (Fisher's exact test), Q value = 2.5e-09
Table S85. Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 14(5P15.33) CNV | 47 | 12 | 4 |
| AMP PEAK 14(5P15.33) WILD-TYPE | 96 | 72 | 146 |
Figure S85. Get High-res Image Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.21e-14 (Fisher's exact test), Q value = 3e-11
Table S86. Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 14(5P15.33) CNV | 42 | 0 | 6 |
| AMP PEAK 14(5P15.33) WILD-TYPE | 100 | 107 | 107 |
Figure S86. Get High-res Image Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.37e-12 (Fisher's exact test), Q value = 2.1e-09
Table S87. Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 14(5P15.33) CNV | 3 | 0 | 4 | 41 |
| AMP PEAK 14(5P15.33) WILD-TYPE | 62 | 92 | 61 | 99 |
Figure S87. Get High-res Image Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.73e-13 (Fisher's exact test), Q value = 2.5e-10
Table S88. Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 14(5P15.33) CNV | 62 | 5 | 9 |
| AMP PEAK 14(5P15.33) WILD-TYPE | 145 | 139 | 123 |
Figure S88. Get High-res Image Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 7.09e-14 (Fisher's exact test), Q value = 6.5e-11
Table S89. Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 14(5P15.33) CNV | 7 | 6 | 4 | 59 |
| AMP PEAK 14(5P15.33) WILD-TYPE | 186 | 73 | 23 | 125 |
Figure S89. Get High-res Image Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.51e-07 (Fisher's exact test), Q value = 1e-04
Table S90. Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 14(5P15.33) CNV | 46 | 4 | 12 |
| AMP PEAK 14(5P15.33) WILD-TYPE | 123 | 112 | 62 |
Figure S90. Get High-res Image Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 3.03e-08 (Fisher's exact test), Q value = 2.2e-05
Table S91. Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 14(5P15.33) CNV | 3 | 51 | 8 |
| AMP PEAK 14(5P15.33) WILD-TYPE | 114 | 146 | 37 |
Figure S91. Get High-res Image Gene #14: 'Amp Peak 14(5p15.33)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 8.67e-20 (Chi-square test), Q value = 9.1e-17
Table S92. Gene #15: 'Amp Peak 15(5q35.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 15(5Q35.3) CNV | 2 | 3 | 42 | 0 | 1 |
| AMP PEAK 15(5Q35.3) WILD-TYPE | 288 | 37 | 97 | 17 | 5 |
Figure S92. Get High-res Image Gene #15: 'Amp Peak 15(5q35.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.18e-07 (Fisher's exact test), Q value = 0.00021
Table S93. Gene #15: 'Amp Peak 15(5q35.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 15(5Q35.3) CNV | 23 | 0 | 4 |
| AMP PEAK 15(5Q35.3) WILD-TYPE | 119 | 107 | 109 |
Figure S93. Get High-res Image Gene #15: 'Amp Peak 15(5q35.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6.98e-05 (Fisher's exact test), Q value = 0.036
Table S94. Gene #15: 'Amp Peak 15(5q35.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 15(5Q35.3) CNV | 2 | 0 | 5 | 20 |
| AMP PEAK 15(5Q35.3) WILD-TYPE | 63 | 92 | 60 | 120 |
Figure S94. Get High-res Image Gene #15: 'Amp Peak 15(5q35.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.92e-07 (Fisher's exact test), Q value = 0.00013
Table S95. Gene #15: 'Amp Peak 15(5q35.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 15(5Q35.3) CNV | 38 | 4 | 5 |
| AMP PEAK 15(5Q35.3) WILD-TYPE | 169 | 140 | 127 |
Figure S95. Get High-res Image Gene #15: 'Amp Peak 15(5q35.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.69e-06 (Fisher's exact test), Q value = 0.0017
Table S96. Gene #15: 'Amp Peak 15(5q35.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 15(5Q35.3) CNV | 8 | 4 | 0 | 35 |
| AMP PEAK 15(5Q35.3) WILD-TYPE | 185 | 75 | 27 | 149 |
Figure S96. Get High-res Image Gene #15: 'Amp Peak 15(5q35.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000377 (Fisher's exact test), Q value = 0.18
Table S97. Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| AMP PEAK 16(6P24.2) CNV | 1 | 2 | 9 |
| AMP PEAK 16(6P24.2) WILD-TYPE | 18 | 17 | 6 |
Figure S97. Get High-res Image Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.36e-39 (Chi-square test), Q value = 1.5e-36
Table S98. Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 16(6P24.2) CNV | 8 | 3 | 80 | 9 | 1 |
| AMP PEAK 16(6P24.2) WILD-TYPE | 282 | 37 | 59 | 8 | 5 |
Figure S98. Get High-res Image Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.83e-11 (Fisher's exact test), Q value = 1.5e-08
Table S99. Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 16(6P24.2) CNV | 57 | 17 | 10 |
| AMP PEAK 16(6P24.2) WILD-TYPE | 86 | 67 | 140 |
Figure S99. Get High-res Image Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.000177 (Chi-square test), Q value = 0.086
Table S100. Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 41 | 37 | 39 | 12 | 41 | 24 |
| AMP PEAK 16(6P24.2) CNV | 4 | 12 | 2 | 1 | 0 | 2 |
| AMP PEAK 16(6P24.2) WILD-TYPE | 37 | 25 | 37 | 11 | 41 | 22 |
Figure S100. Get High-res Image Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 6.92e-16 (Fisher's exact test), Q value = 6.6e-13
Table S101. Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 16(6P24.2) CNV | 52 | 7 | 2 |
| AMP PEAK 16(6P24.2) WILD-TYPE | 90 | 100 | 111 |
Figure S101. Get High-res Image Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.49e-14 (Fisher's exact test), Q value = 1.4e-11
Table S102. Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 16(6P24.2) CNV | 0 | 6 | 4 | 51 |
| AMP PEAK 16(6P24.2) WILD-TYPE | 65 | 86 | 61 | 89 |
Figure S102. Get High-res Image Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.26e-16 (Fisher's exact test), Q value = 1.2e-13
Table S103. Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 16(6P24.2) CNV | 79 | 11 | 8 |
| AMP PEAK 16(6P24.2) WILD-TYPE | 128 | 133 | 124 |
Figure S103. Get High-res Image Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 4.77e-15 (Fisher's exact test), Q value = 4.5e-12
Table S104. Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 16(6P24.2) CNV | 14 | 7 | 4 | 73 |
| AMP PEAK 16(6P24.2) WILD-TYPE | 179 | 72 | 23 | 111 |
Figure S104. Get High-res Image Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 7.41e-06 (Fisher's exact test), Q value = 0.0044
Table S105. Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 16(6P24.2) CNV | 54 | 10 | 19 |
| AMP PEAK 16(6P24.2) WILD-TYPE | 115 | 106 | 55 |
Figure S105. Get High-res Image Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.23e-06 (Fisher's exact test), Q value = 0.0014
Table S106. Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 16(6P24.2) CNV | 11 | 65 | 7 |
| AMP PEAK 16(6P24.2) WILD-TYPE | 106 | 132 | 38 |
Figure S106. Get High-res Image Gene #16: 'Amp Peak 16(6p24.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 7.52e-22 (Chi-square test), Q value = 8e-19
Table S107. Gene #17: 'Amp Peak 17(6q25.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 17(6Q25.1) CNV | 8 | 5 | 53 | 8 | 2 |
| AMP PEAK 17(6Q25.1) WILD-TYPE | 282 | 35 | 86 | 9 | 4 |
Figure S107. Get High-res Image Gene #17: 'Amp Peak 17(6q25.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.7e-06 (Fisher's exact test), Q value = 0.0017
Table S108. Gene #17: 'Amp Peak 17(6q25.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 17(6Q25.1) CNV | 43 | 11 | 12 |
| AMP PEAK 17(6Q25.1) WILD-TYPE | 100 | 73 | 138 |
Figure S108. Get High-res Image Gene #17: 'Amp Peak 17(6q25.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.97e-07 (Fisher's exact test), Q value = 0.00032
Table S109. Gene #17: 'Amp Peak 17(6q25.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 17(6Q25.1) CNV | 36 | 7 | 5 |
| AMP PEAK 17(6Q25.1) WILD-TYPE | 106 | 100 | 108 |
Figure S109. Get High-res Image Gene #17: 'Amp Peak 17(6q25.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.03e-08 (Fisher's exact test), Q value = 7.6e-06
Table S110. Gene #17: 'Amp Peak 17(6q25.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 17(6Q25.1) CNV | 0 | 5 | 6 | 37 |
| AMP PEAK 17(6Q25.1) WILD-TYPE | 65 | 87 | 59 | 103 |
Figure S110. Get High-res Image Gene #17: 'Amp Peak 17(6q25.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 8.25e-06 (Fisher's exact test), Q value = 0.0049
Table S111. Gene #17: 'Amp Peak 17(6q25.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 17(6Q25.1) CNV | 52 | 13 | 11 |
| AMP PEAK 17(6Q25.1) WILD-TYPE | 155 | 131 | 121 |
Figure S111. Get High-res Image Gene #17: 'Amp Peak 17(6q25.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 8.96e-06 (Fisher's exact test), Q value = 0.0053
Table S112. Gene #17: 'Amp Peak 17(6q25.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 17(6Q25.1) CNV | 16 | 8 | 3 | 49 |
| AMP PEAK 17(6Q25.1) WILD-TYPE | 177 | 71 | 24 | 135 |
Figure S112. Get High-res Image Gene #17: 'Amp Peak 17(6q25.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.12e-20 (Chi-square test), Q value = 5.4e-17
Table S113. Gene #18: 'Amp Peak 18(7q22.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 18(7Q22.1) CNV | 12 | 22 | 39 | 7 | 2 |
| AMP PEAK 18(7Q22.1) WILD-TYPE | 278 | 18 | 100 | 10 | 4 |
Figure S113. Get High-res Image Gene #18: 'Amp Peak 18(7q22.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.7e-23 (Chi-square test), Q value = 1.8e-20
Table S114. Gene #19: 'Amp Peak 19(8p11.21)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 19(8P11.21) CNV | 38 | 20 | 69 | 17 | 2 |
| AMP PEAK 19(8P11.21) WILD-TYPE | 252 | 20 | 70 | 0 | 4 |
Figure S114. Get High-res Image Gene #19: 'Amp Peak 19(8p11.21)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.25e-05 (Fisher's exact test), Q value = 0.013
Table S115. Gene #19: 'Amp Peak 19(8p11.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 19(8P11.21) CNV | 12 | 15 | 12 | 58 |
| AMP PEAK 19(8P11.21) WILD-TYPE | 53 | 77 | 53 | 82 |
Figure S115. Get High-res Image Gene #19: 'Amp Peak 19(8p11.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.37e-05 (Fisher's exact test), Q value = 0.033
Table S116. Gene #19: 'Amp Peak 19(8p11.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 19(8P11.21) CNV | 83 | 29 | 31 |
| AMP PEAK 19(8P11.21) WILD-TYPE | 124 | 115 | 101 |
Figure S116. Get High-res Image Gene #19: 'Amp Peak 19(8p11.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.000301 (Fisher's exact test), Q value = 0.14
Table S117. Gene #19: 'Amp Peak 19(8p11.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 19(8P11.21) CNV | 39 | 21 | 12 | 71 |
| AMP PEAK 19(8P11.21) WILD-TYPE | 154 | 58 | 15 | 113 |
Figure S117. Get High-res Image Gene #19: 'Amp Peak 19(8p11.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.54e-35 (Chi-square test), Q value = 1.7e-32
Table S118. Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 20(8Q24.21) CNV | 44 | 23 | 101 | 17 | 3 |
| AMP PEAK 20(8Q24.21) WILD-TYPE | 246 | 17 | 38 | 0 | 3 |
Figure S118. Get High-res Image Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.12e-06 (Fisher's exact test), Q value = 0.00072
Table S119. Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 20(8Q24.21) CNV | 83 | 34 | 42 |
| AMP PEAK 20(8Q24.21) WILD-TYPE | 60 | 50 | 108 |
Figure S119. Get High-res Image Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8.75e-05 (Chi-square test), Q value = 0.045
Table S120. Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 41 | 37 | 39 | 12 | 41 | 24 |
| AMP PEAK 20(8Q24.21) CNV | 12 | 14 | 8 | 2 | 2 | 14 |
| AMP PEAK 20(8Q24.21) WILD-TYPE | 29 | 23 | 31 | 10 | 39 | 10 |
Figure S120. Get High-res Image Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 3.35e-09 (Fisher's exact test), Q value = 2.5e-06
Table S121. Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 20(8Q24.21) CNV | 74 | 20 | 25 |
| AMP PEAK 20(8Q24.21) WILD-TYPE | 68 | 87 | 88 |
Figure S121. Get High-res Image Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.26e-11 (Fisher's exact test), Q value = 1.1e-08
Table S122. Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 20(8Q24.21) CNV | 13 | 15 | 13 | 78 |
| AMP PEAK 20(8Q24.21) WILD-TYPE | 52 | 77 | 52 | 62 |
Figure S122. Get High-res Image Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.45e-11 (Fisher's exact test), Q value = 2.9e-08
Table S123. Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 20(8Q24.21) CNV | 116 | 36 | 33 |
| AMP PEAK 20(8Q24.21) WILD-TYPE | 91 | 108 | 99 |
Figure S123. Get High-res Image Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 4.25e-12 (Fisher's exact test), Q value = 3.7e-09
Table S124. Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 20(8Q24.21) CNV | 43 | 23 | 12 | 107 |
| AMP PEAK 20(8Q24.21) WILD-TYPE | 150 | 56 | 15 | 77 |
Figure S124. Get High-res Image Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000232 (Fisher's exact test), Q value = 0.11
Table S125. Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 20(8Q24.21) CNV | 89 | 33 | 30 |
| AMP PEAK 20(8Q24.21) WILD-TYPE | 80 | 83 | 44 |
Figure S125. Get High-res Image Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 3.14e-05 (Fisher's exact test), Q value = 0.017
Table S126. Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 20(8Q24.21) CNV | 30 | 98 | 24 |
| AMP PEAK 20(8Q24.21) WILD-TYPE | 87 | 99 | 21 |
Figure S126. Get High-res Image Gene #20: 'Amp Peak 20(8q24.21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 8.36e-35 (Chi-square test), Q value = 9.4e-32
Table S127. Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 21(8Q24.21) CNV | 49 | 23 | 104 | 17 | 3 |
| AMP PEAK 21(8Q24.21) WILD-TYPE | 241 | 17 | 35 | 0 | 3 |
Figure S127. Get High-res Image Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.08e-05 (Fisher's exact test), Q value = 0.012
Table S128. Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 21(8Q24.21) CNV | 83 | 35 | 47 |
| AMP PEAK 21(8Q24.21) WILD-TYPE | 60 | 49 | 103 |
Figure S128. Get High-res Image Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 7.26e-07 (Chi-square test), Q value = 0.00047
Table S129. Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 41 | 37 | 39 | 12 | 41 | 24 |
| AMP PEAK 21(8Q24.21) CNV | 12 | 17 | 7 | 2 | 2 | 16 |
| AMP PEAK 21(8Q24.21) WILD-TYPE | 29 | 20 | 32 | 10 | 39 | 8 |
Figure S129. Get High-res Image Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1.82e-08 (Fisher's exact test), Q value = 1.3e-05
Table S130. Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 21(8Q24.21) CNV | 76 | 25 | 25 |
| AMP PEAK 21(8Q24.21) WILD-TYPE | 66 | 82 | 88 |
Figure S130. Get High-res Image Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.7e-11 (Fisher's exact test), Q value = 1.4e-08
Table S131. Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 21(8Q24.21) CNV | 13 | 20 | 12 | 81 |
| AMP PEAK 21(8Q24.21) WILD-TYPE | 52 | 72 | 53 | 59 |
Figure S131. Get High-res Image Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.82e-13 (Fisher's exact test), Q value = 6.1e-10
Table S132. Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 21(8Q24.21) CNV | 122 | 37 | 33 |
| AMP PEAK 21(8Q24.21) WILD-TYPE | 85 | 107 | 99 |
Figure S132. Get High-res Image Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.25e-11 (Fisher's exact test), Q value = 1.1e-08
Table S133. Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 21(8Q24.21) CNV | 47 | 23 | 13 | 109 |
| AMP PEAK 21(8Q24.21) WILD-TYPE | 146 | 56 | 14 | 75 |
Figure S133. Get High-res Image Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000433 (Fisher's exact test), Q value = 0.2
Table S134. Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 21(8Q24.21) CNV | 92 | 36 | 31 |
| AMP PEAK 21(8Q24.21) WILD-TYPE | 77 | 80 | 43 |
Figure S134. Get High-res Image Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 8.93e-05 (Fisher's exact test), Q value = 0.046
Table S135. Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 21(8Q24.21) CNV | 33 | 102 | 24 |
| AMP PEAK 21(8Q24.21) WILD-TYPE | 84 | 95 | 21 |
Figure S135. Get High-res Image Gene #21: 'Amp Peak 21(8q24.21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.87e-22 (Chi-square test), Q value = 3.1e-19
Table S136. Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 22(9P24.2) CNV | 5 | 3 | 49 | 0 | 0 |
| AMP PEAK 22(9P24.2) WILD-TYPE | 285 | 37 | 90 | 17 | 6 |
Figure S136. Get High-res Image Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.96e-07 (Fisher's exact test), Q value = 0.00032
Table S137. Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 22(9P24.2) CNV | 33 | 7 | 5 |
| AMP PEAK 22(9P24.2) WILD-TYPE | 110 | 77 | 145 |
Figure S137. Get High-res Image Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.97e-09 (Fisher's exact test), Q value = 2.3e-06
Table S138. Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 22(9P24.2) CNV | 32 | 2 | 3 |
| AMP PEAK 22(9P24.2) WILD-TYPE | 110 | 105 | 110 |
Figure S138. Get High-res Image Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.17e-10 (Fisher's exact test), Q value = 9.5e-08
Table S139. Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 22(9P24.2) CNV | 0 | 0 | 5 | 32 |
| AMP PEAK 22(9P24.2) WILD-TYPE | 65 | 92 | 60 | 108 |
Figure S139. Get High-res Image Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.29e-12 (Fisher's exact test), Q value = 5.4e-09
Table S140. Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 22(9P24.2) CNV | 48 | 2 | 6 |
| AMP PEAK 22(9P24.2) WILD-TYPE | 159 | 142 | 126 |
Figure S140. Get High-res Image Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.84e-11 (Fisher's exact test), Q value = 1.5e-08
Table S141. Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 22(9P24.2) CNV | 5 | 3 | 2 | 46 |
| AMP PEAK 22(9P24.2) WILD-TYPE | 188 | 76 | 25 | 138 |
Figure S141. Get High-res Image Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 8.13e-05 (Fisher's exact test), Q value = 0.042
Table S142. Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 22(9P24.2) CNV | 31 | 3 | 10 |
| AMP PEAK 22(9P24.2) WILD-TYPE | 138 | 113 | 64 |
Figure S142. Get High-res Image Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.03e-05 (Fisher's exact test), Q value = 0.006
Table S143. Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 22(9P24.2) CNV | 2 | 34 | 8 |
| AMP PEAK 22(9P24.2) WILD-TYPE | 115 | 163 | 37 |
Figure S143. Get High-res Image Gene #22: 'Amp Peak 22(9p24.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3.79e-12 (Chi-square test), Q value = 3.3e-09
Table S144. Gene #23: 'Amp Peak 23(9q34.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 23(9Q34.3) CNV | 3 | 1 | 28 | 0 | 0 |
| AMP PEAK 23(9Q34.3) WILD-TYPE | 287 | 39 | 111 | 17 | 6 |
Figure S144. Get High-res Image Gene #23: 'Amp Peak 23(9q34.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 8.04e-05 (Fisher's exact test), Q value = 0.042
Table S145. Gene #23: 'Amp Peak 23(9q34.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 23(9Q34.3) CNV | 17 | 5 | 1 |
| AMP PEAK 23(9Q34.3) WILD-TYPE | 126 | 79 | 149 |
Figure S145. Get High-res Image Gene #23: 'Amp Peak 23(9q34.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.14e-05 (Fisher's exact test), Q value = 0.012
Table S146. Gene #23: 'Amp Peak 23(9q34.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 23(9Q34.3) CNV | 20 | 1 | 3 |
| AMP PEAK 23(9Q34.3) WILD-TYPE | 122 | 106 | 110 |
Figure S146. Get High-res Image Gene #23: 'Amp Peak 23(9q34.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.98e-06 (Fisher's exact test), Q value = 0.0024
Table S147. Gene #23: 'Amp Peak 23(9q34.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 23(9Q34.3) CNV | 2 | 0 | 1 | 21 |
| AMP PEAK 23(9Q34.3) WILD-TYPE | 63 | 92 | 64 | 119 |
Figure S147. Get High-res Image Gene #23: 'Amp Peak 23(9q34.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00012 (Fisher's exact test), Q value = 0.06
Table S148. Gene #23: 'Amp Peak 23(9q34.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 23(9Q34.3) CNV | 3 | 3 | 0 | 22 |
| AMP PEAK 23(9Q34.3) WILD-TYPE | 190 | 76 | 27 | 162 |
Figure S148. Get High-res Image Gene #23: 'Amp Peak 23(9q34.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.77e-08 (Chi-square test), Q value = 1.3e-05
Table S149. Gene #24: 'Amp Peak 24(10q22.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 24(10Q22.2) CNV | 48 | 18 | 53 | 10 | 3 |
| AMP PEAK 24(10Q22.2) WILD-TYPE | 242 | 22 | 86 | 7 | 3 |
Figure S149. Get High-res Image Gene #24: 'Amp Peak 24(10q22.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.32e-16 (Chi-square test), Q value = 1.3e-13
Table S150. Gene #25: 'Amp Peak 25(11p11.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 25(11P11.2) CNV | 1 | 6 | 37 | 1 | 0 |
| AMP PEAK 25(11P11.2) WILD-TYPE | 289 | 34 | 102 | 16 | 6 |
Figure S150. Get High-res Image Gene #25: 'Amp Peak 25(11p11.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5.34e-05 (Fisher's exact test), Q value = 0.028
Table S151. Gene #25: 'Amp Peak 25(11p11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 25(11P11.2) CNV | 21 | 12 | 3 |
| AMP PEAK 25(11P11.2) WILD-TYPE | 122 | 72 | 147 |
Figure S151. Get High-res Image Gene #25: 'Amp Peak 25(11p11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.37e-05 (Fisher's exact test), Q value = 0.013
Table S152. Gene #25: 'Amp Peak 25(11p11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 25(11P11.2) CNV | 23 | 4 | 2 |
| AMP PEAK 25(11P11.2) WILD-TYPE | 119 | 103 | 111 |
Figure S152. Get High-res Image Gene #25: 'Amp Peak 25(11p11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 9.28e-05 (Fisher's exact test), Q value = 0.047
Table S153. Gene #25: 'Amp Peak 25(11p11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 25(11P11.2) CNV | 1 | 3 | 2 | 23 |
| AMP PEAK 25(11P11.2) WILD-TYPE | 64 | 89 | 63 | 117 |
Figure S153. Get High-res Image Gene #25: 'Amp Peak 25(11p11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.16e-07 (Fisher's exact test), Q value = 7.9e-05
Table S154. Gene #25: 'Amp Peak 25(11p11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 25(11P11.2) CNV | 36 | 6 | 2 |
| AMP PEAK 25(11P11.2) WILD-TYPE | 171 | 138 | 130 |
Figure S154. Get High-res Image Gene #25: 'Amp Peak 25(11p11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.31e-06 (Fisher's exact test), Q value = 0.002
Table S155. Gene #25: 'Amp Peak 25(11p11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 25(11P11.2) CNV | 7 | 2 | 2 | 33 |
| AMP PEAK 25(11P11.2) WILD-TYPE | 186 | 77 | 25 | 151 |
Figure S155. Get High-res Image Gene #25: 'Amp Peak 25(11p11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.92e-22 (Chi-square test), Q value = 6.3e-19
Table S156. Gene #26: 'Amp Peak 26(11q13.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 26(11Q13.2) CNV | 6 | 8 | 53 | 1 | 0 |
| AMP PEAK 26(11Q13.2) WILD-TYPE | 284 | 32 | 86 | 16 | 6 |
Figure S156. Get High-res Image Gene #26: 'Amp Peak 26(11q13.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.000168 (Fisher's exact test), Q value = 0.082
Table S157. Gene #26: 'Amp Peak 26(11q13.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 26(11Q13.2) CNV | 32 | 13 | 9 |
| AMP PEAK 26(11Q13.2) WILD-TYPE | 111 | 71 | 141 |
Figure S157. Get High-res Image Gene #26: 'Amp Peak 26(11q13.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 9.44e-06 (Fisher's exact test), Q value = 0.0056
Table S158. Gene #26: 'Amp Peak 26(11q13.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 26(11Q13.2) CNV | 32 | 7 | 5 |
| AMP PEAK 26(11Q13.2) WILD-TYPE | 110 | 100 | 108 |
Figure S158. Get High-res Image Gene #26: 'Amp Peak 26(11q13.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5.58e-08 (Fisher's exact test), Q value = 3.9e-05
Table S159. Gene #26: 'Amp Peak 26(11q13.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 26(11Q13.2) CNV | 1 | 6 | 2 | 35 |
| AMP PEAK 26(11Q13.2) WILD-TYPE | 64 | 86 | 63 | 105 |
Figure S159. Get High-res Image Gene #26: 'Amp Peak 26(11q13.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.11e-07 (Fisher's exact test), Q value = 7.6e-05
Table S160. Gene #26: 'Amp Peak 26(11q13.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 26(11Q13.2) CNV | 47 | 13 | 4 |
| AMP PEAK 26(11Q13.2) WILD-TYPE | 160 | 131 | 128 |
Figure S160. Get High-res Image Gene #26: 'Amp Peak 26(11q13.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5.46e-07 (Fisher's exact test), Q value = 0.00036
Table S161. Gene #26: 'Amp Peak 26(11q13.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 26(11Q13.2) CNV | 15 | 2 | 3 | 44 |
| AMP PEAK 26(11Q13.2) WILD-TYPE | 178 | 77 | 24 | 140 |
Figure S161. Get High-res Image Gene #26: 'Amp Peak 26(11q13.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.1e-15 (Chi-square test), Q value = 4.8e-12
Table S162. Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 27(12P12.1) CNV | 15 | 12 | 49 | 2 | 3 |
| AMP PEAK 27(12P12.1) WILD-TYPE | 275 | 28 | 90 | 15 | 3 |
Figure S162. Get High-res Image Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 9.11e-08 (Fisher's exact test), Q value = 6.3e-05
Table S163. Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 27(12P12.1) CNV | 44 | 13 | 9 |
| AMP PEAK 27(12P12.1) WILD-TYPE | 99 | 71 | 141 |
Figure S163. Get High-res Image Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.17e-05 (Fisher's exact test), Q value = 0.022
Table S164. Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 27(12P12.1) CNV | 33 | 9 | 6 |
| AMP PEAK 27(12P12.1) WILD-TYPE | 109 | 98 | 107 |
Figure S164. Get High-res Image Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.11e-05 (Fisher's exact test), Q value = 0.012
Table S165. Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 27(12P12.1) CNV | 1 | 8 | 6 | 33 |
| AMP PEAK 27(12P12.1) WILD-TYPE | 64 | 84 | 59 | 107 |
Figure S165. Get High-res Image Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 8.04e-08 (Fisher's exact test), Q value = 5.6e-05
Table S166. Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 27(12P12.1) CNV | 58 | 11 | 12 |
| AMP PEAK 27(12P12.1) WILD-TYPE | 149 | 133 | 120 |
Figure S166. Get High-res Image Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.05e-09 (Fisher's exact test), Q value = 8.2e-07
Table S167. Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 27(12P12.1) CNV | 19 | 5 | 0 | 57 |
| AMP PEAK 27(12P12.1) WILD-TYPE | 174 | 74 | 27 | 127 |
Figure S167. Get High-res Image Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000155 (Fisher's exact test), Q value = 0.076
Table S168. Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 27(12P12.1) CNV | 43 | 8 | 13 |
| AMP PEAK 27(12P12.1) WILD-TYPE | 126 | 108 | 61 |
Figure S168. Get High-res Image Gene #27: 'Amp Peak 27(12p12.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 6.74e-17 (Chi-square test), Q value = 6.6e-14
Table S169. Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 28(12Q13.11) CNV | 12 | 13 | 49 | 2 | 3 |
| AMP PEAK 28(12Q13.11) WILD-TYPE | 278 | 27 | 90 | 15 | 3 |
Figure S169. Get High-res Image Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.95e-08 (Fisher's exact test), Q value = 2.1e-05
Table S170. Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 28(12Q13.11) CNV | 42 | 15 | 7 |
| AMP PEAK 28(12Q13.11) WILD-TYPE | 101 | 69 | 143 |
Figure S170. Get High-res Image Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.19e-06 (Fisher's exact test), Q value = 0.0014
Table S171. Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 28(12Q13.11) CNV | 34 | 7 | 5 |
| AMP PEAK 28(12Q13.11) WILD-TYPE | 108 | 100 | 108 |
Figure S171. Get High-res Image Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.95e-06 (Fisher's exact test), Q value = 0.0012
Table S172. Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 28(12Q13.11) CNV | 1 | 6 | 5 | 34 |
| AMP PEAK 28(12Q13.11) WILD-TYPE | 64 | 86 | 60 | 106 |
Figure S172. Get High-res Image Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.61e-08 (Fisher's exact test), Q value = 1.2e-05
Table S173. Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 28(12Q13.11) CNV | 58 | 10 | 11 |
| AMP PEAK 28(12Q13.11) WILD-TYPE | 149 | 134 | 121 |
Figure S173. Get High-res Image Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 4.08e-09 (Fisher's exact test), Q value = 3.1e-06
Table S174. Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 28(12Q13.11) CNV | 16 | 6 | 1 | 56 |
| AMP PEAK 28(12Q13.11) WILD-TYPE | 177 | 73 | 26 | 128 |
Figure S174. Get High-res Image Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.87e-05 (Fisher's exact test), Q value = 0.021
Table S175. Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 28(12Q13.11) CNV | 41 | 6 | 13 |
| AMP PEAK 28(12Q13.11) WILD-TYPE | 128 | 110 | 61 |
Figure S175. Get High-res Image Gene #28: 'Amp Peak 28(12q13.11)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.75e-17 (Chi-square test), Q value = 1.7e-14
Table S176. Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 29(12Q13.2) CNV | 15 | 13 | 54 | 2 | 3 |
| AMP PEAK 29(12Q13.2) WILD-TYPE | 275 | 27 | 85 | 15 | 3 |
Figure S176. Get High-res Image Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.84e-07 (Fisher's exact test), Q value = 0.00012
Table S177. Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 29(12Q13.2) CNV | 46 | 13 | 11 |
| AMP PEAK 29(12Q13.2) WILD-TYPE | 97 | 71 | 139 |
Figure S177. Get High-res Image Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.66e-08 (Fisher's exact test), Q value = 1.2e-05
Table S178. Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 29(12Q13.2) CNV | 40 | 7 | 5 |
| AMP PEAK 29(12Q13.2) WILD-TYPE | 102 | 100 | 108 |
Figure S178. Get High-res Image Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6.54e-08 (Fisher's exact test), Q value = 4.5e-05
Table S179. Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 29(12Q13.2) CNV | 1 | 6 | 6 | 39 |
| AMP PEAK 29(12Q13.2) WILD-TYPE | 64 | 86 | 59 | 101 |
Figure S179. Get High-res Image Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.24e-08 (Fisher's exact test), Q value = 1.6e-05
Table S180. Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 29(12Q13.2) CNV | 61 | 14 | 10 |
| AMP PEAK 29(12Q13.2) WILD-TYPE | 146 | 130 | 122 |
Figure S180. Get High-res Image Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.83e-10 (Fisher's exact test), Q value = 1.5e-07
Table S181. Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 29(12Q13.2) CNV | 20 | 5 | 0 | 60 |
| AMP PEAK 29(12Q13.2) WILD-TYPE | 173 | 74 | 27 | 124 |
Figure S181. Get High-res Image Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.74e-05 (Fisher's exact test), Q value = 0.03
Table S182. Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 29(12Q13.2) CNV | 48 | 10 | 10 |
| AMP PEAK 29(12Q13.2) WILD-TYPE | 121 | 106 | 64 |
Figure S182. Get High-res Image Gene #29: 'Amp Peak 29(12q13.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4.18e-20 (Chi-square test), Q value = 4.4e-17
Table S183. Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 30(13Q34) CNV | 4 | 0 | 43 | 1 | 1 |
| AMP PEAK 30(13Q34) WILD-TYPE | 286 | 40 | 96 | 16 | 5 |
Figure S183. Get High-res Image Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.92e-06 (Fisher's exact test), Q value = 0.0012
Table S184. Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 30(13Q34) CNV | 30 | 10 | 4 |
| AMP PEAK 30(13Q34) WILD-TYPE | 113 | 74 | 146 |
Figure S184. Get High-res Image Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8.41e-12 (Fisher's exact test), Q value = 7.2e-09
Table S185. Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 30(13Q34) CNV | 31 | 2 | 0 |
| AMP PEAK 30(13Q34) WILD-TYPE | 111 | 105 | 113 |
Figure S185. Get High-res Image Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.37e-07 (Fisher's exact test), Q value = 9.3e-05
Table S186. Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 30(13Q34) CNV | 0 | 2 | 3 | 28 |
| AMP PEAK 30(13Q34) WILD-TYPE | 65 | 90 | 62 | 112 |
Figure S186. Get High-res Image Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.78e-11 (Fisher's exact test), Q value = 3.9e-08
Table S187. Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 30(13Q34) CNV | 43 | 4 | 2 |
| AMP PEAK 30(13Q34) WILD-TYPE | 164 | 140 | 130 |
Figure S187. Get High-res Image Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.36e-10 (Fisher's exact test), Q value = 1.9e-07
Table S188. Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 30(13Q34) CNV | 6 | 1 | 1 | 41 |
| AMP PEAK 30(13Q34) WILD-TYPE | 187 | 78 | 26 | 143 |
Figure S188. Get High-res Image Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00016 (Fisher's exact test), Q value = 0.079
Table S189. Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 30(13Q34) CNV | 29 | 3 | 11 |
| AMP PEAK 30(13Q34) WILD-TYPE | 140 | 113 | 63 |
Figure S189. Get High-res Image Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.000115 (Fisher's exact test), Q value = 0.057
Table S190. Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 30(13Q34) CNV | 4 | 36 | 3 |
| AMP PEAK 30(13Q34) WILD-TYPE | 113 | 161 | 42 |
Figure S190. Get High-res Image Gene #30: 'Amp Peak 30(13q34)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 6.04e-18 (Chi-square test), Q value = 6.1e-15
Table S191. Gene #31: 'Amp Peak 31(14q24.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 31(14Q24.3) CNV | 4 | 5 | 44 | 3 | 0 |
| AMP PEAK 31(14Q24.3) WILD-TYPE | 286 | 35 | 95 | 14 | 6 |
Figure S191. Get High-res Image Gene #31: 'Amp Peak 31(14q24.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.15e-05 (Fisher's exact test), Q value = 0.017
Table S192. Gene #31: 'Amp Peak 31(14q24.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 31(14Q24.3) CNV | 30 | 10 | 6 |
| AMP PEAK 31(14Q24.3) WILD-TYPE | 113 | 74 | 144 |
Figure S192. Get High-res Image Gene #31: 'Amp Peak 31(14q24.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.85e-08 (Fisher's exact test), Q value = 3.4e-05
Table S193. Gene #31: 'Amp Peak 31(14q24.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 31(14Q24.3) CNV | 29 | 5 | 1 |
| AMP PEAK 31(14Q24.3) WILD-TYPE | 113 | 102 | 112 |
Figure S193. Get High-res Image Gene #31: 'Amp Peak 31(14q24.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.14e-10 (Fisher's exact test), Q value = 9.3e-08
Table S194. Gene #31: 'Amp Peak 31(14q24.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 31(14Q24.3) CNV | 0 | 3 | 0 | 32 |
| AMP PEAK 31(14Q24.3) WILD-TYPE | 65 | 89 | 65 | 108 |
Figure S194. Get High-res Image Gene #31: 'Amp Peak 31(14q24.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.83e-08 (Fisher's exact test), Q value = 2.7e-05
Table S195. Gene #31: 'Amp Peak 31(14q24.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 31(14Q24.3) CNV | 43 | 7 | 4 |
| AMP PEAK 31(14Q24.3) WILD-TYPE | 164 | 137 | 128 |
Figure S195. Get High-res Image Gene #31: 'Amp Peak 31(14q24.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.56e-08 (Fisher's exact test), Q value = 1.1e-05
Table S196. Gene #31: 'Amp Peak 31(14q24.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 31(14Q24.3) CNV | 8 | 3 | 1 | 42 |
| AMP PEAK 31(14Q24.3) WILD-TYPE | 185 | 76 | 26 | 142 |
Figure S196. Get High-res Image Gene #31: 'Amp Peak 31(14q24.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.26e-22 (Chi-square test), Q value = 4.5e-19
Table S197. Gene #32: 'Amp Peak 32(14q32.33)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 32(14Q32.33) CNV | 6 | 6 | 54 | 4 | 0 |
| AMP PEAK 32(14Q32.33) WILD-TYPE | 284 | 34 | 85 | 13 | 6 |
Figure S197. Get High-res Image Gene #32: 'Amp Peak 32(14q32.33)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 9.51e-07 (Fisher's exact test), Q value = 0.00061
Table S198. Gene #32: 'Amp Peak 32(14q32.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 32(14Q32.33) CNV | 37 | 14 | 7 |
| AMP PEAK 32(14Q32.33) WILD-TYPE | 106 | 70 | 143 |
Figure S198. Get High-res Image Gene #32: 'Amp Peak 32(14q32.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.54e-05 (Fisher's exact test), Q value = 0.019
Table S199. Gene #32: 'Amp Peak 32(14q32.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 32(14Q32.33) CNV | 28 | 6 | 4 |
| AMP PEAK 32(14Q32.33) WILD-TYPE | 114 | 101 | 109 |
Figure S199. Get High-res Image Gene #32: 'Amp Peak 32(14q32.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.77e-08 (Fisher's exact test), Q value = 3.4e-05
Table S200. Gene #32: 'Amp Peak 32(14q32.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 32(14Q32.33) CNV | 1 | 3 | 2 | 32 |
| AMP PEAK 32(14Q32.33) WILD-TYPE | 64 | 89 | 63 | 108 |
Figure S200. Get High-res Image Gene #32: 'Amp Peak 32(14q32.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.19e-08 (Fisher's exact test), Q value = 2.3e-05
Table S201. Gene #32: 'Amp Peak 32(14q32.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 32(14Q32.33) CNV | 51 | 13 | 5 |
| AMP PEAK 32(14Q32.33) WILD-TYPE | 156 | 131 | 127 |
Figure S201. Get High-res Image Gene #32: 'Amp Peak 32(14q32.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.09e-09 (Fisher's exact test), Q value = 1.6e-06
Table S202. Gene #32: 'Amp Peak 32(14q32.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 32(14Q32.33) CNV | 13 | 3 | 2 | 51 |
| AMP PEAK 32(14Q32.33) WILD-TYPE | 180 | 76 | 25 | 133 |
Figure S202. Get High-res Image Gene #32: 'Amp Peak 32(14q32.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.49e-21 (Chi-square test), Q value = 5.8e-18
Table S203. Gene #33: 'Amp Peak 33(16p11.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 33(16P11.2) CNV | 2 | 6 | 46 | 1 | 0 |
| AMP PEAK 33(16P11.2) WILD-TYPE | 288 | 34 | 93 | 16 | 6 |
Figure S203. Get High-res Image Gene #33: 'Amp Peak 33(16p11.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.15e-05 (Fisher's exact test), Q value = 0.017
Table S204. Gene #33: 'Amp Peak 33(16p11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 33(16P11.2) CNV | 30 | 10 | 6 |
| AMP PEAK 33(16P11.2) WILD-TYPE | 113 | 74 | 144 |
Figure S204. Get High-res Image Gene #33: 'Amp Peak 33(16p11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.31e-09 (Fisher's exact test), Q value = 1e-06
Table S205. Gene #33: 'Amp Peak 33(16p11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 33(16P11.2) CNV | 32 | 1 | 4 |
| AMP PEAK 33(16P11.2) WILD-TYPE | 110 | 106 | 109 |
Figure S205. Get High-res Image Gene #33: 'Amp Peak 33(16p11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.78e-09 (Fisher's exact test), Q value = 1.4e-06
Table S206. Gene #33: 'Amp Peak 33(16p11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 33(16P11.2) CNV | 3 | 0 | 2 | 32 |
| AMP PEAK 33(16P11.2) WILD-TYPE | 62 | 92 | 63 | 108 |
Figure S206. Get High-res Image Gene #33: 'Amp Peak 33(16p11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.87e-10 (Fisher's exact test), Q value = 3.8e-07
Table S207. Gene #33: 'Amp Peak 33(16p11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 33(16P11.2) CNV | 44 | 4 | 4 |
| AMP PEAK 33(16P11.2) WILD-TYPE | 163 | 140 | 128 |
Figure S207. Get High-res Image Gene #33: 'Amp Peak 33(16p11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.63e-09 (Fisher's exact test), Q value = 2.7e-06
Table S208. Gene #33: 'Amp Peak 33(16p11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 33(16P11.2) CNV | 8 | 1 | 2 | 41 |
| AMP PEAK 33(16P11.2) WILD-TYPE | 185 | 78 | 25 | 143 |
Figure S208. Get High-res Image Gene #33: 'Amp Peak 33(16p11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.72e-26 (Chi-square test), Q value = 1.9e-23
Table S209. Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 34(17Q11.2) CNV | 4 | 1 | 55 | 2 | 1 |
| AMP PEAK 34(17Q11.2) WILD-TYPE | 286 | 39 | 84 | 15 | 5 |
Figure S209. Get High-res Image Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.71e-11 (Fisher's exact test), Q value = 1.4e-08
Table S210. Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 34(17Q11.2) CNV | 42 | 9 | 3 |
| AMP PEAK 34(17Q11.2) WILD-TYPE | 101 | 75 | 147 |
Figure S210. Get High-res Image Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.25e-10 (Fisher's exact test), Q value = 1e-07
Table S211. Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 34(17Q11.2) CNV | 31 | 2 | 1 |
| AMP PEAK 34(17Q11.2) WILD-TYPE | 111 | 105 | 112 |
Figure S211. Get High-res Image Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.81e-10 (Fisher's exact test), Q value = 3.8e-07
Table S212. Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 34(17Q11.2) CNV | 0 | 0 | 4 | 30 |
| AMP PEAK 34(17Q11.2) WILD-TYPE | 65 | 92 | 61 | 110 |
Figure S212. Get High-res Image Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.32e-16 (Fisher's exact test), Q value = 2.2e-13
Table S213. Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 34(17Q11.2) CNV | 55 | 2 | 3 |
| AMP PEAK 34(17Q11.2) WILD-TYPE | 152 | 142 | 129 |
Figure S213. Get High-res Image Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.28e-12 (Fisher's exact test), Q value = 1.1e-09
Table S214. Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 34(17Q11.2) CNV | 4 | 5 | 2 | 49 |
| AMP PEAK 34(17Q11.2) WILD-TYPE | 189 | 74 | 25 | 135 |
Figure S214. Get High-res Image Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.5e-06 (Fisher's exact test), Q value = 0.0021
Table S215. Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 34(17Q11.2) CNV | 37 | 3 | 11 |
| AMP PEAK 34(17Q11.2) WILD-TYPE | 132 | 113 | 63 |
Figure S215. Get High-res Image Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4.33e-07 (Fisher's exact test), Q value = 0.00029
Table S216. Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 34(17Q11.2) CNV | 4 | 45 | 2 |
| AMP PEAK 34(17Q11.2) WILD-TYPE | 113 | 152 | 43 |
Figure S216. Get High-res Image Gene #34: 'Amp Peak 34(17q11.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 5.56e-23 (Chi-square test), Q value = 6e-20
Table S217. Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 35(17Q12) CNV | 6 | 2 | 53 | 2 | 1 |
| AMP PEAK 35(17Q12) WILD-TYPE | 284 | 38 | 86 | 15 | 5 |
Figure S217. Get High-res Image Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.33e-12 (Fisher's exact test), Q value = 1.2e-09
Table S218. Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 35(17Q12) CNV | 42 | 8 | 2 |
| AMP PEAK 35(17Q12) WILD-TYPE | 101 | 76 | 148 |
Figure S218. Get High-res Image Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.77e-13 (Fisher's exact test), Q value = 3.4e-10
Table S219. Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 35(17Q12) CNV | 37 | 2 | 1 |
| AMP PEAK 35(17Q12) WILD-TYPE | 105 | 105 | 112 |
Figure S219. Get High-res Image Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.74e-10 (Fisher's exact test), Q value = 2.2e-07
Table S220. Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 35(17Q12) CNV | 0 | 1 | 5 | 34 |
| AMP PEAK 35(17Q12) WILD-TYPE | 65 | 91 | 60 | 106 |
Figure S220. Get High-res Image Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.27e-16 (Fisher's exact test), Q value = 6e-13
Table S221. Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 35(17Q12) CNV | 56 | 3 | 3 |
| AMP PEAK 35(17Q12) WILD-TYPE | 151 | 141 | 129 |
Figure S221. Get High-res Image Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 8.88e-17 (Fisher's exact test), Q value = 8.7e-14
Table S222. Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 35(17Q12) CNV | 5 | 2 | 0 | 55 |
| AMP PEAK 35(17Q12) WILD-TYPE | 188 | 77 | 27 | 129 |
Figure S222. Get High-res Image Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 8.07e-06 (Fisher's exact test), Q value = 0.0048
Table S223. Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 35(17Q12) CNV | 35 | 3 | 12 |
| AMP PEAK 35(17Q12) WILD-TYPE | 134 | 113 | 62 |
Figure S223. Get High-res Image Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.03e-08 (Fisher's exact test), Q value = 7.6e-06
Table S224. Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 35(17Q12) CNV | 3 | 46 | 1 |
| AMP PEAK 35(17Q12) WILD-TYPE | 114 | 151 | 44 |
Figure S224. Get High-res Image Gene #35: 'Amp Peak 35(17q12)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000187 (Fisher's exact test), Q value = 0.091
Table S225. Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 14 | 17 | 12 | 10 |
| AMP PEAK 36(17Q25.1) CNV | 0 | 9 | 1 | 0 |
| AMP PEAK 36(17Q25.1) WILD-TYPE | 14 | 8 | 11 | 10 |
Figure S225. Get High-res Image Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.94e-05 (Fisher's exact test), Q value = 0.011
Table S226. Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| AMP PEAK 36(17Q25.1) CNV | 1 | 0 | 9 |
| AMP PEAK 36(17Q25.1) WILD-TYPE | 18 | 19 | 6 |
Figure S226. Get High-res Image Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 4.44e-41 (Chi-square test), Q value = 5e-38
Table S227. Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 36(17Q25.1) CNV | 5 | 4 | 79 | 1 | 1 |
| AMP PEAK 36(17Q25.1) WILD-TYPE | 285 | 36 | 60 | 16 | 5 |
Figure S227. Get High-res Image Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.15e-11 (Fisher's exact test), Q value = 9.9e-09
Table S228. Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 36(17Q25.1) CNV | 48 | 16 | 5 |
| AMP PEAK 36(17Q25.1) WILD-TYPE | 95 | 68 | 145 |
Figure S228. Get High-res Image Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.59e-12 (Fisher's exact test), Q value = 2.3e-09
Table S229. Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 36(17Q25.1) CNV | 44 | 3 | 5 |
| AMP PEAK 36(17Q25.1) WILD-TYPE | 98 | 104 | 108 |
Figure S229. Get High-res Image Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.88e-13 (Fisher's exact test), Q value = 3.5e-10
Table S230. Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 36(17Q25.1) CNV | 1 | 1 | 6 | 44 |
| AMP PEAK 36(17Q25.1) WILD-TYPE | 64 | 91 | 59 | 96 |
Figure S230. Get High-res Image Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5.61e-17 (Fisher's exact test), Q value = 5.5e-14
Table S231. Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 36(17Q25.1) CNV | 72 | 9 | 5 |
| AMP PEAK 36(17Q25.1) WILD-TYPE | 135 | 135 | 127 |
Figure S231. Get High-res Image Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 7.58e-18 (Fisher's exact test), Q value = 7.6e-15
Table S232. Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 36(17Q25.1) CNV | 10 | 4 | 2 | 70 |
| AMP PEAK 36(17Q25.1) WILD-TYPE | 183 | 75 | 25 | 114 |
Figure S232. Get High-res Image Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.34e-05 (Fisher's exact test), Q value = 0.028
Table S233. Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 36(17Q25.1) CNV | 42 | 7 | 16 |
| AMP PEAK 36(17Q25.1) WILD-TYPE | 127 | 109 | 58 |
Figure S233. Get High-res Image Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.61e-07 (Fisher's exact test), Q value = 0.00017
Table S234. Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 36(17Q25.1) CNV | 7 | 55 | 3 |
| AMP PEAK 36(17Q25.1) WILD-TYPE | 110 | 142 | 42 |
Figure S234. Get High-res Image Gene #36: 'Amp Peak 36(17q25.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.43e-33 (Chi-square test), Q value = 2.7e-30
Table S235. Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 37(18P11.31) CNV | 5 | 5 | 69 | 2 | 0 |
| AMP PEAK 37(18P11.31) WILD-TYPE | 285 | 35 | 70 | 15 | 6 |
Figure S235. Get High-res Image Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.15e-11 (Fisher's exact test), Q value = 9.9e-09
Table S236. Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 37(18P11.31) CNV | 48 | 16 | 5 |
| AMP PEAK 37(18P11.31) WILD-TYPE | 95 | 68 | 145 |
Figure S236. Get High-res Image Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.45e-11 (Fisher's exact test), Q value = 1.2e-08
Table S237. Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 37(18P11.31) CNV | 41 | 4 | 3 |
| AMP PEAK 37(18P11.31) WILD-TYPE | 101 | 103 | 110 |
Figure S237. Get High-res Image Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.9e-13 (Fisher's exact test), Q value = 1.7e-10
Table S238. Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 37(18P11.31) CNV | 1 | 3 | 1 | 43 |
| AMP PEAK 37(18P11.31) WILD-TYPE | 64 | 89 | 64 | 97 |
Figure S238. Get High-res Image Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.28e-17 (Fisher's exact test), Q value = 1.3e-14
Table S239. Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 37(18P11.31) CNV | 69 | 7 | 4 |
| AMP PEAK 37(18P11.31) WILD-TYPE | 138 | 137 | 128 |
Figure S239. Get High-res Image Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.02e-19 (Fisher's exact test), Q value = 3.1e-16
Table S240. Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 37(18P11.31) CNV | 8 | 3 | 1 | 68 |
| AMP PEAK 37(18P11.31) WILD-TYPE | 185 | 76 | 26 | 116 |
Figure S240. Get High-res Image Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.12e-07 (Fisher's exact test), Q value = 7.7e-05
Table S241. Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 37(18P11.31) CNV | 45 | 4 | 18 |
| AMP PEAK 37(18P11.31) WILD-TYPE | 124 | 112 | 56 |
Figure S241. Get High-res Image Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.16e-10 (Fisher's exact test), Q value = 1.7e-07
Table S242. Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 37(18P11.31) CNV | 5 | 60 | 2 |
| AMP PEAK 37(18P11.31) WILD-TYPE | 112 | 137 | 43 |
Figure S242. Get High-res Image Gene #37: 'Amp Peak 37(18p11.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4.94e-27 (Chi-square test), Q value = 5.4e-24
Table S243. Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 38(18Q11.2) CNV | 3 | 3 | 55 | 1 | 0 |
| AMP PEAK 38(18Q11.2) WILD-TYPE | 287 | 37 | 84 | 16 | 6 |
Figure S243. Get High-res Image Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.98e-10 (Fisher's exact test), Q value = 3.1e-07
Table S244. Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 38(18Q11.2) CNV | 35 | 16 | 2 |
| AMP PEAK 38(18Q11.2) WILD-TYPE | 108 | 68 | 148 |
Figure S244. Get High-res Image Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.17e-07 (Fisher's exact test), Q value = 8e-05
Table S245. Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 38(18Q11.2) CNV | 28 | 2 | 3 |
| AMP PEAK 38(18Q11.2) WILD-TYPE | 114 | 105 | 110 |
Figure S245. Get High-res Image Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.53e-08 (Fisher's exact test), Q value = 3.2e-05
Table S246. Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 38(18Q11.2) CNV | 1 | 2 | 1 | 29 |
| AMP PEAK 38(18Q11.2) WILD-TYPE | 64 | 90 | 64 | 111 |
Figure S246. Get High-res Image Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.27e-14 (Fisher's exact test), Q value = 2.1e-11
Table S247. Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 38(18Q11.2) CNV | 54 | 3 | 4 |
| AMP PEAK 38(18Q11.2) WILD-TYPE | 153 | 141 | 128 |
Figure S247. Get High-res Image Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 9.48e-17 (Fisher's exact test), Q value = 9.3e-14
Table S248. Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 38(18Q11.2) CNV | 3 | 3 | 1 | 54 |
| AMP PEAK 38(18Q11.2) WILD-TYPE | 190 | 76 | 26 | 130 |
Figure S248. Get High-res Image Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.68e-09 (Fisher's exact test), Q value = 1.3e-06
Table S249. Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 38(18Q11.2) CNV | 37 | 0 | 13 |
| AMP PEAK 38(18Q11.2) WILD-TYPE | 132 | 116 | 61 |
Figure S249. Get High-res Image Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 7.95e-12 (Fisher's exact test), Q value = 6.9e-09
Table S250. Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 38(18Q11.2) CNV | 0 | 48 | 2 |
| AMP PEAK 38(18Q11.2) WILD-TYPE | 117 | 149 | 43 |
Figure S250. Get High-res Image Gene #38: 'Amp Peak 38(18q11.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.35e-05 (Fisher's exact test), Q value = 0.013
Table S251. Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 14 | 17 | 12 | 10 |
| AMP PEAK 39(19P13.2) CNV | 0 | 9 | 0 | 0 |
| AMP PEAK 39(19P13.2) WILD-TYPE | 14 | 8 | 12 | 10 |
Figure S251. Get High-res Image Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.13e-06 (Fisher's exact test), Q value = 0.00073
Table S252. Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| AMP PEAK 39(19P13.2) CNV | 0 | 0 | 9 |
| AMP PEAK 39(19P13.2) WILD-TYPE | 19 | 19 | 6 |
Figure S252. Get High-res Image Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.95e-46 (Chi-square test), Q value = 3.4e-43
Table S253. Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 39(19P13.2) CNV | 0 | 3 | 79 | 2 | 0 |
| AMP PEAK 39(19P13.2) WILD-TYPE | 290 | 37 | 60 | 15 | 6 |
Figure S253. Get High-res Image Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.36e-09 (Fisher's exact test), Q value = 1.1e-06
Table S254. Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 39(19P13.2) CNV | 45 | 20 | 7 |
| AMP PEAK 39(19P13.2) WILD-TYPE | 98 | 64 | 143 |
Figure S254. Get High-res Image Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.09e-18 (Fisher's exact test), Q value = 1.1e-15
Table S255. Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 39(19P13.2) CNV | 49 | 1 | 2 |
| AMP PEAK 39(19P13.2) WILD-TYPE | 93 | 106 | 111 |
Figure S255. Get High-res Image Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.76e-18 (Fisher's exact test), Q value = 1.8e-15
Table S256. Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 39(19P13.2) CNV | 1 | 0 | 2 | 49 |
| AMP PEAK 39(19P13.2) WILD-TYPE | 64 | 92 | 63 | 91 |
Figure S256. Get High-res Image Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.03e-18 (Fisher's exact test), Q value = 1.1e-15
Table S257. Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 39(19P13.2) CNV | 70 | 9 | 2 |
| AMP PEAK 39(19P13.2) WILD-TYPE | 137 | 135 | 130 |
Figure S257. Get High-res Image Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.45e-14 (Fisher's exact test), Q value = 1.4e-11
Table S258. Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 39(19P13.2) CNV | 11 | 3 | 4 | 63 |
| AMP PEAK 39(19P13.2) WILD-TYPE | 182 | 76 | 23 | 121 |
Figure S258. Get High-res Image Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000407 (Fisher's exact test), Q value = 0.19
Table S259. Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 39(19P13.2) CNV | 42 | 9 | 17 |
| AMP PEAK 39(19P13.2) WILD-TYPE | 127 | 107 | 57 |
Figure S259. Get High-res Image Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 8.24e-05 (Fisher's exact test), Q value = 0.042
Table S260. Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 39(19P13.2) CNV | 10 | 53 | 5 |
| AMP PEAK 39(19P13.2) WILD-TYPE | 107 | 144 | 40 |
Figure S260. Get High-res Image Gene #39: 'Amp Peak 39(19p13.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000454 (Fisher's exact test), Q value = 0.21
Table S261. Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| AMP PEAK 40(19P13.11) CNV | 1 | 0 | 7 |
| AMP PEAK 40(19P13.11) WILD-TYPE | 18 | 19 | 8 |
Figure S261. Get High-res Image Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.47e-45 (Chi-square test), Q value = 1.7e-42
Table S262. Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 40(19P13.11) CNV | 0 | 2 | 78 | 2 | 1 |
| AMP PEAK 40(19P13.11) WILD-TYPE | 290 | 38 | 61 | 15 | 5 |
Figure S262. Get High-res Image Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.04e-11 (Fisher's exact test), Q value = 9e-09
Table S263. Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 40(19P13.11) CNV | 48 | 17 | 5 |
| AMP PEAK 40(19P13.11) WILD-TYPE | 95 | 67 | 145 |
Figure S263. Get High-res Image Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 5e-17 (Fisher's exact test), Q value = 4.9e-14
Table S264. Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 40(19P13.11) CNV | 47 | 1 | 3 |
| AMP PEAK 40(19P13.11) WILD-TYPE | 95 | 106 | 110 |
Figure S264. Get High-res Image Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5.37e-18 (Fisher's exact test), Q value = 5.4e-15
Table S265. Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 40(19P13.11) CNV | 1 | 0 | 2 | 48 |
| AMP PEAK 40(19P13.11) WILD-TYPE | 64 | 92 | 63 | 92 |
Figure S265. Get High-res Image Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.77e-18 (Fisher's exact test), Q value = 2.8e-15
Table S266. Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 40(19P13.11) CNV | 70 | 8 | 3 |
| AMP PEAK 40(19P13.11) WILD-TYPE | 137 | 136 | 129 |
Figure S266. Get High-res Image Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.22e-18 (Fisher's exact test), Q value = 3.3e-15
Table S267. Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 40(19P13.11) CNV | 9 | 2 | 3 | 67 |
| AMP PEAK 40(19P13.11) WILD-TYPE | 184 | 77 | 24 | 117 |
Figure S267. Get High-res Image Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 6.47e-06 (Fisher's exact test), Q value = 0.0039
Table S268. Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 40(19P13.11) CNV | 42 | 6 | 19 |
| AMP PEAK 40(19P13.11) WILD-TYPE | 127 | 110 | 55 |
Figure S268. Get High-res Image Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.99e-06 (Fisher's exact test), Q value = 0.0018
Table S269. Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 40(19P13.11) CNV | 7 | 54 | 6 |
| AMP PEAK 40(19P13.11) WILD-TYPE | 110 | 143 | 39 |
Figure S269. Get High-res Image Gene #40: 'Amp Peak 40(19p13.11)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000132 (Fisher's exact test), Q value = 0.066
Table S270. Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| AMP PEAK 41(19Q12) CNV | 2 | 0 | 8 |
| AMP PEAK 41(19Q12) WILD-TYPE | 17 | 19 | 7 |
Figure S270. Get High-res Image Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 9.02e-49 (Chi-square test), Q value = 1e-45
Table S271. Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 41(19Q12) CNV | 4 | 4 | 89 | 4 | 0 |
| AMP PEAK 41(19Q12) WILD-TYPE | 286 | 36 | 50 | 13 | 6 |
Figure S271. Get High-res Image Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.53e-17 (Fisher's exact test), Q value = 4.5e-14
Table S272. Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 41(19Q12) CNV | 62 | 19 | 5 |
| AMP PEAK 41(19Q12) WILD-TYPE | 81 | 65 | 145 |
Figure S272. Get High-res Image Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.87e-21 (Fisher's exact test), Q value = 3e-18
Table S273. Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 41(19Q12) CNV | 56 | 2 | 2 |
| AMP PEAK 41(19Q12) WILD-TYPE | 86 | 105 | 111 |
Figure S273. Get High-res Image Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.66e-20 (Fisher's exact test), Q value = 2.8e-17
Table S274. Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 41(19Q12) CNV | 1 | 0 | 4 | 55 |
| AMP PEAK 41(19Q12) WILD-TYPE | 64 | 92 | 61 | 85 |
Figure S274. Get High-res Image Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.15e-26 (Fisher's exact test), Q value = 1.3e-23
Table S275. Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 41(19Q12) CNV | 87 | 8 | 2 |
| AMP PEAK 41(19Q12) WILD-TYPE | 120 | 136 | 130 |
Figure S275. Get High-res Image Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.06e-24 (Fisher's exact test), Q value = 2.2e-21
Table S276. Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 41(19Q12) CNV | 11 | 2 | 2 | 82 |
| AMP PEAK 41(19Q12) WILD-TYPE | 182 | 77 | 25 | 102 |
Figure S276. Get High-res Image Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.54e-07 (Fisher's exact test), Q value = 3e-04
Table S277. Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 41(19Q12) CNV | 52 | 8 | 23 |
| AMP PEAK 41(19Q12) WILD-TYPE | 117 | 108 | 51 |
Figure S277. Get High-res Image Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 7.11e-09 (Fisher's exact test), Q value = 5.3e-06
Table S278. Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 41(19Q12) CNV | 9 | 69 | 5 |
| AMP PEAK 41(19Q12) WILD-TYPE | 108 | 128 | 40 |
Figure S278. Get High-res Image Gene #41: 'Amp Peak 41(19q12)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.63e-33 (Chi-square test), Q value = 1.8e-30
Table S279. Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 42(20P13) CNV | 8 | 18 | 74 | 2 | 2 |
| AMP PEAK 42(20P13) WILD-TYPE | 282 | 22 | 65 | 15 | 4 |
Figure S279. Get High-res Image Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.54e-09 (Fisher's exact test), Q value = 1.2e-06
Table S280. Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 42(20P13) CNV | 59 | 17 | 15 |
| AMP PEAK 42(20P13) WILD-TYPE | 84 | 67 | 135 |
Figure S280. Get High-res Image Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.74e-11 (Fisher's exact test), Q value = 3.1e-08
Table S281. Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 42(20P13) CNV | 52 | 7 | 9 |
| AMP PEAK 42(20P13) WILD-TYPE | 90 | 100 | 104 |
Figure S281. Get High-res Image Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6.9e-11 (Fisher's exact test), Q value = 5.7e-08
Table S282. Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 42(20P13) CNV | 6 | 5 | 5 | 52 |
| AMP PEAK 42(20P13) WILD-TYPE | 59 | 87 | 60 | 88 |
Figure S282. Get High-res Image Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.52e-12 (Fisher's exact test), Q value = 1.3e-09
Table S283. Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 42(20P13) CNV | 77 | 14 | 12 |
| AMP PEAK 42(20P13) WILD-TYPE | 130 | 130 | 120 |
Figure S283. Get High-res Image Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.15e-10 (Fisher's exact test), Q value = 9.4e-08
Table S284. Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 42(20P13) CNV | 19 | 11 | 3 | 70 |
| AMP PEAK 42(20P13) WILD-TYPE | 174 | 68 | 24 | 114 |
Figure S284. Get High-res Image Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000106 (Fisher's exact test), Q value = 0.053
Table S285. Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 42(20P13) CNV | 55 | 13 | 17 |
| AMP PEAK 42(20P13) WILD-TYPE | 114 | 103 | 57 |
Figure S285. Get High-res Image Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.65e-05 (Fisher's exact test), Q value = 0.0096
Table S286. Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 42(20P13) CNV | 13 | 65 | 7 |
| AMP PEAK 42(20P13) WILD-TYPE | 104 | 132 | 38 |
Figure S286. Get High-res Image Gene #42: 'Amp Peak 42(20p13)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000132 (Fisher's exact test), Q value = 0.066
Table S287. Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| AMP PEAK 43(20Q11.21) CNV | 2 | 0 | 8 |
| AMP PEAK 43(20Q11.21) WILD-TYPE | 17 | 19 | 7 |
Figure S287. Get High-res Image Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 6.65e-49 (Chi-square test), Q value = 7.6e-46
Table S288. Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 43(20Q11.21) CNV | 7 | 24 | 94 | 3 | 2 |
| AMP PEAK 43(20Q11.21) WILD-TYPE | 283 | 16 | 45 | 14 | 4 |
Figure S288. Get High-res Image Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.2e-12 (Fisher's exact test), Q value = 3.7e-09
Table S289. Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 43(20Q11.21) CNV | 72 | 20 | 19 |
| AMP PEAK 43(20Q11.21) WILD-TYPE | 71 | 64 | 131 |
Figure S289. Get High-res Image Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 5.71e-16 (Fisher's exact test), Q value = 5.5e-13
Table S290. Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 43(20Q11.21) CNV | 62 | 8 | 7 |
| AMP PEAK 43(20Q11.21) WILD-TYPE | 80 | 99 | 106 |
Figure S290. Get High-res Image Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.02e-14 (Fisher's exact test), Q value = 9.5e-12
Table S291. Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 43(20Q11.21) CNV | 5 | 5 | 6 | 61 |
| AMP PEAK 43(20Q11.21) WILD-TYPE | 60 | 87 | 59 | 79 |
Figure S291. Get High-res Image Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.5e-19 (Fisher's exact test), Q value = 3.6e-16
Table S292. Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 43(20Q11.21) CNV | 98 | 18 | 11 |
| AMP PEAK 43(20Q11.21) WILD-TYPE | 109 | 126 | 121 |
Figure S292. Get High-res Image Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.62e-15 (Fisher's exact test), Q value = 2.5e-12
Table S293. Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 43(20Q11.21) CNV | 25 | 12 | 2 | 88 |
| AMP PEAK 43(20Q11.21) WILD-TYPE | 168 | 67 | 25 | 96 |
Figure S293. Get High-res Image Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.95e-05 (Fisher's exact test), Q value = 0.016
Table S294. Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 43(20Q11.21) CNV | 69 | 19 | 19 |
| AMP PEAK 43(20Q11.21) WILD-TYPE | 100 | 97 | 55 |
Figure S294. Get High-res Image Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.45e-05 (Fisher's exact test), Q value = 0.0084
Table S295. Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 43(20Q11.21) CNV | 18 | 78 | 11 |
| AMP PEAK 43(20Q11.21) WILD-TYPE | 99 | 119 | 34 |
Figure S295. Get High-res Image Gene #43: 'Amp Peak 43(20q11.21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.71e-49 (Chi-square test), Q value = 3.1e-46
Table S296. Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 44(20Q13.12) CNV | 9 | 25 | 96 | 3 | 3 |
| AMP PEAK 44(20Q13.12) WILD-TYPE | 281 | 15 | 43 | 14 | 3 |
Figure S296. Get High-res Image Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.53e-13 (Fisher's exact test), Q value = 1.4e-10
Table S297. Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 44(20Q13.12) CNV | 79 | 20 | 22 |
| AMP PEAK 44(20Q13.12) WILD-TYPE | 64 | 64 | 128 |
Figure S297. Get High-res Image Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.32e-15 (Fisher's exact test), Q value = 3.2e-12
Table S298. Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 44(20Q13.12) CNV | 64 | 9 | 9 |
| AMP PEAK 44(20Q13.12) WILD-TYPE | 78 | 98 | 104 |
Figure S298. Get High-res Image Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5.03e-15 (Fisher's exact test), Q value = 4.7e-12
Table S299. Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 44(20Q13.12) CNV | 5 | 6 | 7 | 64 |
| AMP PEAK 44(20Q13.12) WILD-TYPE | 60 | 86 | 58 | 76 |
Figure S299. Get High-res Image Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5.09e-18 (Fisher's exact test), Q value = 5.1e-15
Table S300. Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 44(20Q13.12) CNV | 101 | 20 | 14 |
| AMP PEAK 44(20Q13.12) WILD-TYPE | 106 | 124 | 118 |
Figure S300. Get High-res Image Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 9.74e-15 (Fisher's exact test), Q value = 9.1e-12
Table S301. Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 44(20Q13.12) CNV | 26 | 14 | 4 | 91 |
| AMP PEAK 44(20Q13.12) WILD-TYPE | 167 | 65 | 23 | 93 |
Figure S301. Get High-res Image Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.17e-05 (Fisher's exact test), Q value = 0.028
Table S302. Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 44(20Q13.12) CNV | 72 | 21 | 22 |
| AMP PEAK 44(20Q13.12) WILD-TYPE | 97 | 95 | 52 |
Figure S302. Get High-res Image Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 3.54e-05 (Fisher's exact test), Q value = 0.019
Table S303. Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 44(20Q13.12) CNV | 20 | 81 | 14 |
| AMP PEAK 44(20Q13.12) WILD-TYPE | 97 | 116 | 31 |
Figure S303. Get High-res Image Gene #44: 'Amp Peak 44(20q13.12)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.54e-46 (Chi-square test), Q value = 1.7e-43
Table S304. Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 45(20Q13.33) CNV | 10 | 27 | 91 | 3 | 3 |
| AMP PEAK 45(20Q13.33) WILD-TYPE | 280 | 13 | 48 | 14 | 3 |
Figure S304. Get High-res Image Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.26e-10 (Fisher's exact test), Q value = 1e-07
Table S305. Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 45(20Q13.33) CNV | 73 | 21 | 23 |
| AMP PEAK 45(20Q13.33) WILD-TYPE | 70 | 63 | 127 |
Figure S305. Get High-res Image Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 5.7e-13 (Fisher's exact test), Q value = 5.1e-10
Table S306. Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 45(20Q13.33) CNV | 61 | 9 | 11 |
| AMP PEAK 45(20Q13.33) WILD-TYPE | 81 | 98 | 102 |
Figure S306. Get High-res Image Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 8.5e-14 (Fisher's exact test), Q value = 7.8e-11
Table S307. Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 45(20Q13.33) CNV | 5 | 6 | 8 | 62 |
| AMP PEAK 45(20Q13.33) WILD-TYPE | 60 | 86 | 57 | 78 |
Figure S307. Get High-res Image Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5.18e-17 (Fisher's exact test), Q value = 5.1e-14
Table S308. Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 45(20Q13.33) CNV | 98 | 21 | 13 |
| AMP PEAK 45(20Q13.33) WILD-TYPE | 109 | 123 | 119 |
Figure S308. Get High-res Image Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 8.14e-13 (Fisher's exact test), Q value = 7.2e-10
Table S309. Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 45(20Q13.33) CNV | 27 | 13 | 5 | 87 |
| AMP PEAK 45(20Q13.33) WILD-TYPE | 166 | 66 | 22 | 97 |
Figure S309. Get High-res Image Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000438 (Fisher's exact test), Q value = 0.2
Table S310. Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 45(20Q13.33) CNV | 67 | 21 | 23 |
| AMP PEAK 45(20Q13.33) WILD-TYPE | 102 | 95 | 51 |
Figure S310. Get High-res Image Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.000113 (Fisher's exact test), Q value = 0.057
Table S311. Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 45(20Q13.33) CNV | 20 | 78 | 13 |
| AMP PEAK 45(20Q13.33) WILD-TYPE | 97 | 119 | 32 |
Figure S311. Get High-res Image Gene #45: 'Amp Peak 45(20q13.33)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.31e-18 (Chi-square test), Q value = 2.4e-15
Table S312. Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 46(22Q12.2) CNV | 4 | 4 | 44 | 1 | 1 |
| AMP PEAK 46(22Q12.2) WILD-TYPE | 286 | 36 | 95 | 16 | 5 |
Figure S312. Get High-res Image Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.13e-14 (Fisher's exact test), Q value = 2e-11
Table S313. Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| AMP PEAK 46(22Q12.2) CNV | 40 | 8 | 0 |
| AMP PEAK 46(22Q12.2) WILD-TYPE | 103 | 76 | 150 |
Figure S313. Get High-res Image Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 6.35e-13 (Fisher's exact test), Q value = 5.7e-10
Table S314. Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| AMP PEAK 46(22Q12.2) CNV | 32 | 0 | 1 |
| AMP PEAK 46(22Q12.2) WILD-TYPE | 110 | 107 | 112 |
Figure S314. Get High-res Image Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 8.42e-11 (Fisher's exact test), Q value = 6.9e-08
Table S315. Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| AMP PEAK 46(22Q12.2) CNV | 1 | 0 | 1 | 31 |
| AMP PEAK 46(22Q12.2) WILD-TYPE | 64 | 92 | 64 | 109 |
Figure S315. Get High-res Image Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.93e-19 (Fisher's exact test), Q value = 2e-16
Table S316. Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| AMP PEAK 46(22Q12.2) CNV | 52 | 0 | 1 |
| AMP PEAK 46(22Q12.2) WILD-TYPE | 155 | 144 | 131 |
Figure S316. Get High-res Image Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 7.32e-18 (Fisher's exact test), Q value = 7.3e-15
Table S317. Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| AMP PEAK 46(22Q12.2) CNV | 2 | 1 | 0 | 50 |
| AMP PEAK 46(22Q12.2) WILD-TYPE | 191 | 78 | 27 | 134 |
Figure S317. Get High-res Image Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.63e-09 (Fisher's exact test), Q value = 2e-06
Table S318. Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| AMP PEAK 46(22Q12.2) CNV | 40 | 1 | 6 |
| AMP PEAK 46(22Q12.2) WILD-TYPE | 129 | 115 | 68 |
Figure S318. Get High-res Image Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 8.29e-09 (Fisher's exact test), Q value = 6.1e-06
Table S319. Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| AMP PEAK 46(22Q12.2) CNV | 2 | 44 | 1 |
| AMP PEAK 46(22Q12.2) WILD-TYPE | 115 | 153 | 44 |
Figure S319. Get High-res Image Gene #46: 'Amp Peak 46(22q12.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.88e-25 (Chi-square test), Q value = 2.1e-22
Table S320. Gene #47: 'Amp Peak 47(Xp11.23)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 47(XP11.23) CNV | 10 | 16 | 42 | 14 | 2 |
| AMP PEAK 47(XP11.23) WILD-TYPE | 280 | 24 | 97 | 3 | 4 |
Figure S320. Get High-res Image Gene #47: 'Amp Peak 47(Xp11.23)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.98e-24 (Chi-square test), Q value = 5.4e-21
Table S321. Gene #48: 'Amp Peak 48(Xq28)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| AMP PEAK 48(XQ28) CNV | 12 | 16 | 41 | 14 | 2 |
| AMP PEAK 48(XQ28) WILD-TYPE | 278 | 24 | 98 | 3 | 4 |
Figure S321. Get High-res Image Gene #48: 'Amp Peak 48(Xq28)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.79e-23 (Chi-square test), Q value = 1.9e-20
Table S322. Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 1(1P36.21) CNV | 3 | 7 | 51 | 1 | 3 |
| DEL PEAK 1(1P36.21) WILD-TYPE | 287 | 33 | 88 | 16 | 3 |
Figure S322. Get High-res Image Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.39e-07 (Fisher's exact test), Q value = 0.00022
Table S323. Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 1(1P36.21) CNV | 34 | 15 | 5 |
| DEL PEAK 1(1P36.21) WILD-TYPE | 109 | 69 | 145 |
Figure S323. Get High-res Image Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.55e-11 (Fisher's exact test), Q value = 1.3e-08
Table S324. Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 1(1P36.21) CNV | 35 | 0 | 5 |
| DEL PEAK 1(1P36.21) WILD-TYPE | 107 | 107 | 108 |
Figure S324. Get High-res Image Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 7.33e-09 (Fisher's exact test), Q value = 5.4e-06
Table S325. Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 1(1P36.21) CNV | 2 | 0 | 6 | 32 |
| DEL PEAK 1(1P36.21) WILD-TYPE | 63 | 92 | 59 | 108 |
Figure S325. Get High-res Image Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5.45e-09 (Fisher's exact test), Q value = 4.1e-06
Table S326. Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 1(1P36.21) CNV | 49 | 7 | 6 |
| DEL PEAK 1(1P36.21) WILD-TYPE | 158 | 137 | 126 |
Figure S326. Get High-res Image Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.53e-10 (Fisher's exact test), Q value = 1.2e-07
Table S327. Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 1(1P36.21) CNV | 5 | 7 | 3 | 47 |
| DEL PEAK 1(1P36.21) WILD-TYPE | 188 | 72 | 24 | 137 |
Figure S327. Get High-res Image Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.44e-05 (Fisher's exact test), Q value = 0.014
Table S328. Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 1(1P36.21) CNV | 29 | 5 | 20 |
| DEL PEAK 1(1P36.21) WILD-TYPE | 140 | 111 | 54 |
Figure S328. Get High-res Image Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.05e-05 (Fisher's exact test), Q value = 0.012
Table S329. Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 1(1P36.21) CNV | 5 | 44 | 5 |
| DEL PEAK 1(1P36.21) WILD-TYPE | 112 | 153 | 40 |
Figure S329. Get High-res Image Gene #49: 'Del Peak 1(1p36.21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 9.91e-33 (Chi-square test), Q value = 1.1e-29
Table S330. Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 2(1P36.11) CNV | 2 | 7 | 65 | 1 | 3 |
| DEL PEAK 2(1P36.11) WILD-TYPE | 288 | 33 | 74 | 16 | 3 |
Figure S330. Get High-res Image Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5.91e-11 (Fisher's exact test), Q value = 4.9e-08
Table S331. Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 2(1P36.11) CNV | 48 | 15 | 6 |
| DEL PEAK 2(1P36.11) WILD-TYPE | 95 | 69 | 144 |
Figure S331. Get High-res Image Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.96e-12 (Fisher's exact test), Q value = 1.7e-09
Table S332. Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 2(1P36.11) CNV | 37 | 0 | 5 |
| DEL PEAK 2(1P36.11) WILD-TYPE | 105 | 107 | 108 |
Figure S332. Get High-res Image Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.18e-11 (Fisher's exact test), Q value = 2.6e-08
Table S333. Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 2(1P36.11) CNV | 1 | 0 | 5 | 36 |
| DEL PEAK 2(1P36.11) WILD-TYPE | 64 | 92 | 60 | 104 |
Figure S333. Get High-res Image Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.66e-14 (Fisher's exact test), Q value = 1.5e-11
Table S334. Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 2(1P36.11) CNV | 63 | 7 | 5 |
| DEL PEAK 2(1P36.11) WILD-TYPE | 144 | 137 | 127 |
Figure S334. Get High-res Image Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 8.64e-16 (Fisher's exact test), Q value = 8.3e-13
Table S335. Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 2(1P36.11) CNV | 5 | 6 | 4 | 60 |
| DEL PEAK 2(1P36.11) WILD-TYPE | 188 | 73 | 23 | 124 |
Figure S335. Get High-res Image Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.01e-06 (Fisher's exact test), Q value = 0.0019
Table S336. Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 2(1P36.11) CNV | 44 | 6 | 19 |
| DEL PEAK 2(1P36.11) WILD-TYPE | 125 | 110 | 55 |
Figure S336. Get High-res Image Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4.67e-08 (Fisher's exact test), Q value = 3.3e-05
Table S337. Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 2(1P36.11) CNV | 5 | 57 | 7 |
| DEL PEAK 2(1P36.11) WILD-TYPE | 112 | 140 | 38 |
Figure S337. Get High-res Image Gene #50: 'Del Peak 2(1p36.11)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 6.48e-09 (Chi-square test), Q value = 4.8e-06
Table S338. Gene #52: 'Del Peak 4(2p25.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 4(2P25.3) CNV | 2 | 1 | 21 | 0 | 0 |
| DEL PEAK 4(2P25.3) WILD-TYPE | 288 | 39 | 118 | 17 | 6 |
Figure S338. Get High-res Image Gene #52: 'Del Peak 4(2p25.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.000516 (Fisher's exact test), Q value = 0.23
Table S339. Gene #52: 'Del Peak 4(2p25.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 4(2P25.3) CNV | 17 | 4 | 2 |
| DEL PEAK 4(2P25.3) WILD-TYPE | 126 | 80 | 148 |
Figure S339. Get High-res Image Gene #52: 'Del Peak 4(2p25.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8.8e-05 (Fisher's exact test), Q value = 0.045
Table S340. Gene #52: 'Del Peak 4(2p25.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 4(2P25.3) CNV | 13 | 0 | 1 |
| DEL PEAK 4(2P25.3) WILD-TYPE | 129 | 107 | 112 |
Figure S340. Get High-res Image Gene #52: 'Del Peak 4(2p25.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 0.000323 (Fisher's exact test), Q value = 0.15
Table S341. Gene #52: 'Del Peak 4(2p25.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 4(2P25.3) CNV | 1 | 0 | 0 | 13 |
| DEL PEAK 4(2P25.3) WILD-TYPE | 64 | 92 | 65 | 127 |
Figure S341. Get High-res Image Gene #52: 'Del Peak 4(2p25.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.7e-20 (Chi-square test), Q value = 2.8e-17
Table S342. Gene #53: 'Del Peak 5(2q22.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 5(2Q22.1) CNV | 0 | 4 | 40 | 0 | 0 |
| DEL PEAK 5(2Q22.1) WILD-TYPE | 290 | 36 | 99 | 17 | 6 |
Figure S342. Get High-res Image Gene #53: 'Del Peak 5(2q22.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.000159 (Fisher's exact test), Q value = 0.078
Table S343. Gene #53: 'Del Peak 5(2q22.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 5(2Q22.1) CNV | 23 | 10 | 4 |
| DEL PEAK 5(2Q22.1) WILD-TYPE | 120 | 74 | 146 |
Figure S343. Get High-res Image Gene #53: 'Del Peak 5(2q22.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.55e-08 (Fisher's exact test), Q value = 1.1e-05
Table S344. Gene #53: 'Del Peak 5(2q22.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 5(2Q22.1) CNV | 22 | 1 | 0 |
| DEL PEAK 5(2Q22.1) WILD-TYPE | 120 | 106 | 113 |
Figure S344. Get High-res Image Gene #53: 'Del Peak 5(2q22.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 7.77e-08 (Fisher's exact test), Q value = 5.4e-05
Table S345. Gene #53: 'Del Peak 5(2q22.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 5(2Q22.1) CNV | 0 | 0 | 1 | 22 |
| DEL PEAK 5(2Q22.1) WILD-TYPE | 65 | 92 | 64 | 118 |
Figure S345. Get High-res Image Gene #53: 'Del Peak 5(2q22.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.62e-07 (Fisher's exact test), Q value = 0.00011
Table S346. Gene #53: 'Del Peak 5(2q22.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 5(2Q22.1) CNV | 35 | 4 | 3 |
| DEL PEAK 5(2Q22.1) WILD-TYPE | 172 | 140 | 129 |
Figure S346. Get High-res Image Gene #53: 'Del Peak 5(2q22.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.01e-05 (Fisher's exact test), Q value = 0.012
Table S347. Gene #53: 'Del Peak 5(2q22.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 5(2Q22.1) CNV | 6 | 4 | 1 | 31 |
| DEL PEAK 5(2Q22.1) WILD-TYPE | 187 | 75 | 26 | 153 |
Figure S347. Get High-res Image Gene #53: 'Del Peak 5(2q22.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 7.94e-17 (Chi-square test), Q value = 7.8e-14
Table S348. Gene #54: 'Del Peak 6(2q37.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 6(2Q37.3) CNV | 3 | 7 | 39 | 0 | 0 |
| DEL PEAK 6(2Q37.3) WILD-TYPE | 287 | 33 | 100 | 17 | 6 |
Figure S348. Get High-res Image Gene #54: 'Del Peak 6(2q37.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.000128 (Fisher's exact test), Q value = 0.064
Table S349. Gene #54: 'Del Peak 6(2q37.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 6(2Q37.3) CNV | 30 | 7 | 8 |
| DEL PEAK 6(2Q37.3) WILD-TYPE | 113 | 77 | 142 |
Figure S349. Get High-res Image Gene #54: 'Del Peak 6(2q37.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.36e-05 (Fisher's exact test), Q value = 0.0079
Table S350. Gene #54: 'Del Peak 6(2q37.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 6(2Q37.3) CNV | 21 | 2 | 2 |
| DEL PEAK 6(2Q37.3) WILD-TYPE | 121 | 105 | 111 |
Figure S350. Get High-res Image Gene #54: 'Del Peak 6(2q37.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.43e-06 (Fisher's exact test), Q value = 0.00091
Table S351. Gene #54: 'Del Peak 6(2q37.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 6(2Q37.3) CNV | 0 | 0 | 4 | 21 |
| DEL PEAK 6(2Q37.3) WILD-TYPE | 65 | 92 | 61 | 119 |
Figure S351. Get High-res Image Gene #54: 'Del Peak 6(2q37.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 0.000248 (Fisher's exact test), Q value = 0.12
Table S352. Gene #54: 'Del Peak 6(2q37.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 6(2Q37.3) CNV | 34 | 8 | 6 |
| DEL PEAK 6(2Q37.3) WILD-TYPE | 173 | 136 | 126 |
Figure S352. Get High-res Image Gene #54: 'Del Peak 6(2q37.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 0.000461 (Fisher's exact test), Q value = 0.21
Table S353. Gene #54: 'Del Peak 6(2q37.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 6(2Q37.3) CNV | 10 | 4 | 2 | 32 |
| DEL PEAK 6(2Q37.3) WILD-TYPE | 183 | 75 | 25 | 152 |
Figure S353. Get High-res Image Gene #54: 'Del Peak 6(2q37.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.91e-31 (Chi-square test), Q value = 6.6e-28
Table S354. Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 7(3P14.2) CNV | 1 | 8 | 60 | 0 | 0 |
| DEL PEAK 7(3P14.2) WILD-TYPE | 289 | 32 | 79 | 17 | 6 |
Figure S354. Get High-res Image Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.99e-09 (Fisher's exact test), Q value = 1.5e-06
Table S355. Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 7(3P14.2) CNV | 39 | 15 | 4 |
| DEL PEAK 7(3P14.2) WILD-TYPE | 104 | 69 | 146 |
Figure S355. Get High-res Image Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.77e-15 (Fisher's exact test), Q value = 3.6e-12
Table S356. Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 7(3P14.2) CNV | 41 | 2 | 1 |
| DEL PEAK 7(3P14.2) WILD-TYPE | 101 | 105 | 112 |
Figure S356. Get High-res Image Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.8e-14 (Fisher's exact test), Q value = 1.7e-11
Table S357. Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 7(3P14.2) CNV | 0 | 1 | 2 | 41 |
| DEL PEAK 7(3P14.2) WILD-TYPE | 65 | 91 | 63 | 99 |
Figure S357. Get High-res Image Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.39e-13 (Fisher's exact test), Q value = 1.3e-10
Table S358. Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 7(3P14.2) CNV | 57 | 4 | 6 |
| DEL PEAK 7(3P14.2) WILD-TYPE | 150 | 140 | 126 |
Figure S358. Get High-res Image Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.98e-12 (Fisher's exact test), Q value = 1.7e-09
Table S359. Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 7(3P14.2) CNV | 6 | 6 | 2 | 53 |
| DEL PEAK 7(3P14.2) WILD-TYPE | 187 | 73 | 25 | 131 |
Figure S359. Get High-res Image Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.12e-05 (Fisher's exact test), Q value = 0.022
Table S360. Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 7(3P14.2) CNV | 38 | 5 | 13 |
| DEL PEAK 7(3P14.2) WILD-TYPE | 131 | 111 | 61 |
Figure S360. Get High-res Image Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.6e-05 (Fisher's exact test), Q value = 0.014
Table S361. Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 7(3P14.2) CNV | 5 | 44 | 7 |
| DEL PEAK 7(3P14.2) WILD-TYPE | 112 | 153 | 38 |
Figure S361. Get High-res Image Gene #55: 'Del Peak 7(3p14.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.44e-12 (Chi-square test), Q value = 1.3e-09
Table S362. Gene #56: 'Del Peak 8(3q13.31)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 8(3Q13.31) CNV | 1 | 1 | 26 | 0 | 0 |
| DEL PEAK 8(3Q13.31) WILD-TYPE | 289 | 39 | 113 | 17 | 6 |
Figure S362. Get High-res Image Gene #56: 'Del Peak 8(3q13.31)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.000246 (Fisher's exact test), Q value = 0.12
Table S363. Gene #56: 'Del Peak 8(3q13.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 8(3Q13.31) CNV | 12 | 0 | 1 |
| DEL PEAK 8(3Q13.31) WILD-TYPE | 130 | 107 | 112 |
Figure S363. Get High-res Image Gene #56: 'Del Peak 8(3q13.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.07e-06 (Fisher's exact test), Q value = 0.0013
Table S364. Gene #56: 'Del Peak 8(3q13.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 8(3Q13.31) CNV | 24 | 2 | 1 |
| DEL PEAK 8(3Q13.31) WILD-TYPE | 183 | 142 | 131 |
Figure S364. Get High-res Image Gene #56: 'Del Peak 8(3q13.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 7.27e-06 (Fisher's exact test), Q value = 0.0043
Table S365. Gene #56: 'Del Peak 8(3q13.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 8(3Q13.31) CNV | 4 | 0 | 0 | 23 |
| DEL PEAK 8(3Q13.31) WILD-TYPE | 189 | 79 | 27 | 161 |
Figure S365. Get High-res Image Gene #56: 'Del Peak 8(3q13.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.41e-30 (Chi-square test), Q value = 1.6e-27
Table S366. Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 9(4P16.3) CNV | 4 | 12 | 67 | 3 | 1 |
| DEL PEAK 9(4P16.3) WILD-TYPE | 286 | 28 | 72 | 14 | 5 |
Figure S366. Get High-res Image Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5.4e-12 (Fisher's exact test), Q value = 4.7e-09
Table S367. Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 9(4P16.3) CNV | 53 | 15 | 7 |
| DEL PEAK 9(4P16.3) WILD-TYPE | 90 | 69 | 143 |
Figure S367. Get High-res Image Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.57e-10 (Fisher's exact test), Q value = 1.3e-07
Table S368. Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 9(4P16.3) CNV | 40 | 4 | 4 |
| DEL PEAK 9(4P16.3) WILD-TYPE | 102 | 103 | 109 |
Figure S368. Get High-res Image Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 9.13e-11 (Fisher's exact test), Q value = 7.5e-08
Table S369. Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 9(4P16.3) CNV | 1 | 2 | 5 | 40 |
| DEL PEAK 9(4P16.3) WILD-TYPE | 64 | 90 | 60 | 100 |
Figure S369. Get High-res Image Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.73e-15 (Fisher's exact test), Q value = 4.5e-12
Table S370. Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 9(4P16.3) CNV | 69 | 9 | 6 |
| DEL PEAK 9(4P16.3) WILD-TYPE | 138 | 135 | 126 |
Figure S370. Get High-res Image Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 6.11e-13 (Fisher's exact test), Q value = 5.5e-10
Table S371. Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 9(4P16.3) CNV | 9 | 9 | 4 | 62 |
| DEL PEAK 9(4P16.3) WILD-TYPE | 184 | 70 | 23 | 122 |
Figure S371. Get High-res Image Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.35e-05 (Fisher's exact test), Q value = 0.018
Table S372. Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 9(4P16.3) CNV | 48 | 9 | 18 |
| DEL PEAK 9(4P16.3) WILD-TYPE | 121 | 107 | 56 |
Figure S372. Get High-res Image Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 7.51e-07 (Fisher's exact test), Q value = 0.00049
Table S373. Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 9(4P16.3) CNV | 7 | 58 | 10 |
| DEL PEAK 9(4P16.3) WILD-TYPE | 110 | 139 | 35 |
Figure S373. Get High-res Image Gene #57: 'Del Peak 9(4p16.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4.15e-35 (Chi-square test), Q value = 4.7e-32
Table S374. Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 10(4P15.31) CNV | 3 | 12 | 72 | 3 | 0 |
| DEL PEAK 10(4P15.31) WILD-TYPE | 287 | 28 | 67 | 14 | 6 |
Figure S374. Get High-res Image Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.8e-13 (Fisher's exact test), Q value = 1.6e-10
Table S375. Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 10(4P15.31) CNV | 55 | 17 | 6 |
| DEL PEAK 10(4P15.31) WILD-TYPE | 88 | 67 | 144 |
Figure S375. Get High-res Image Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.81e-11 (Fisher's exact test), Q value = 3.2e-08
Table S376. Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 10(4P15.31) CNV | 40 | 3 | 4 |
| DEL PEAK 10(4P15.31) WILD-TYPE | 102 | 104 | 109 |
Figure S376. Get High-res Image Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.36e-11 (Fisher's exact test), Q value = 3.6e-08
Table S377. Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 10(4P15.31) CNV | 1 | 2 | 4 | 40 |
| DEL PEAK 10(4P15.31) WILD-TYPE | 64 | 90 | 61 | 100 |
Figure S377. Get High-res Image Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.18e-18 (Fisher's exact test), Q value = 1.2e-15
Table S378. Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 10(4P15.31) CNV | 75 | 8 | 5 |
| DEL PEAK 10(4P15.31) WILD-TYPE | 132 | 136 | 127 |
Figure S378. Get High-res Image Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.21e-16 (Fisher's exact test), Q value = 3.1e-13
Table S379. Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 10(4P15.31) CNV | 8 | 8 | 4 | 68 |
| DEL PEAK 10(4P15.31) WILD-TYPE | 185 | 71 | 23 | 116 |
Figure S379. Get High-res Image Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.21e-06 (Fisher's exact test), Q value = 0.00077
Table S380. Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 10(4P15.31) CNV | 53 | 8 | 17 |
| DEL PEAK 10(4P15.31) WILD-TYPE | 116 | 108 | 57 |
Figure S380. Get High-res Image Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.45e-08 (Fisher's exact test), Q value = 1.1e-05
Table S381. Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 10(4P15.31) CNV | 6 | 63 | 9 |
| DEL PEAK 10(4P15.31) WILD-TYPE | 111 | 134 | 36 |
Figure S381. Get High-res Image Gene #58: 'Del Peak 10(4p15.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000454 (Fisher's exact test), Q value = 0.21
Table S382. Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 11(4Q22.1) CNV | 1 | 0 | 7 |
| DEL PEAK 11(4Q22.1) WILD-TYPE | 18 | 19 | 8 |
Figure S382. Get High-res Image Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.04e-46 (Chi-square test), Q value = 1.2e-43
Table S383. Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 11(4Q22.1) CNV | 2 | 9 | 86 | 1 | 1 |
| DEL PEAK 11(4Q22.1) WILD-TYPE | 288 | 31 | 53 | 16 | 5 |
Figure S383. Get High-res Image Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.82e-18 (Fisher's exact test), Q value = 4.9e-15
Table S384. Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 11(4Q22.1) CNV | 62 | 18 | 4 |
| DEL PEAK 11(4Q22.1) WILD-TYPE | 81 | 66 | 146 |
Figure S384. Get High-res Image Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.1e-16 (Fisher's exact test), Q value = 1.1e-13
Table S385. Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 11(4Q22.1) CNV | 50 | 2 | 4 |
| DEL PEAK 11(4Q22.1) WILD-TYPE | 92 | 105 | 109 |
Figure S385. Get High-res Image Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.16e-18 (Fisher's exact test), Q value = 1.2e-15
Table S386. Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 11(4Q22.1) CNV | 1 | 1 | 2 | 52 |
| DEL PEAK 11(4Q22.1) WILD-TYPE | 64 | 91 | 63 | 88 |
Figure S386. Get High-res Image Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.6e-24 (Fisher's exact test), Q value = 2.8e-21
Table S387. Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 11(4Q22.1) CNV | 85 | 7 | 4 |
| DEL PEAK 11(4Q22.1) WILD-TYPE | 122 | 137 | 128 |
Figure S387. Get High-res Image Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 6.82e-24 (Fisher's exact test), Q value = 7.4e-21
Table S388. Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 11(4Q22.1) CNV | 5 | 7 | 5 | 79 |
| DEL PEAK 11(4Q22.1) WILD-TYPE | 188 | 72 | 22 | 105 |
Figure S388. Get High-res Image Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 6.19e-09 (Fisher's exact test), Q value = 4.6e-06
Table S389. Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 11(4Q22.1) CNV | 55 | 6 | 23 |
| DEL PEAK 11(4Q22.1) WILD-TYPE | 114 | 110 | 51 |
Figure S389. Get High-res Image Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.17e-11 (Fisher's exact test), Q value = 1.8e-08
Table S390. Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 11(4Q22.1) CNV | 5 | 71 | 8 |
| DEL PEAK 11(4Q22.1) WILD-TYPE | 112 | 126 | 37 |
Figure S390. Get High-res Image Gene #59: 'Del Peak 11(4q22.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000454 (Fisher's exact test), Q value = 0.21
Table S391. Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 12(4Q34.3) CNV | 1 | 0 | 7 |
| DEL PEAK 12(4Q34.3) WILD-TYPE | 18 | 19 | 8 |
Figure S391. Get High-res Image Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.43e-51 (Chi-square test), Q value = 1.6e-48
Table S392. Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 12(4Q34.3) CNV | 6 | 10 | 97 | 1 | 1 |
| DEL PEAK 12(4Q34.3) WILD-TYPE | 284 | 30 | 42 | 16 | 5 |
Figure S392. Get High-res Image Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.06e-15 (Fisher's exact test), Q value = 2e-12
Table S393. Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 12(4Q34.3) CNV | 66 | 23 | 9 |
| DEL PEAK 12(4Q34.3) WILD-TYPE | 77 | 61 | 141 |
Figure S393. Get High-res Image Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.31e-18 (Fisher's exact test), Q value = 1.3e-15
Table S394. Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 12(4Q34.3) CNV | 59 | 3 | 6 |
| DEL PEAK 12(4Q34.3) WILD-TYPE | 83 | 104 | 107 |
Figure S394. Get High-res Image Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 8.83e-20 (Fisher's exact test), Q value = 9.2e-17
Table S395. Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 12(4Q34.3) CNV | 1 | 1 | 7 | 59 |
| DEL PEAK 12(4Q34.3) WILD-TYPE | 64 | 91 | 58 | 81 |
Figure S395. Get High-res Image Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.45e-21 (Fisher's exact test), Q value = 1.5e-18
Table S396. Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 12(4Q34.3) CNV | 92 | 8 | 12 |
| DEL PEAK 12(4Q34.3) WILD-TYPE | 115 | 136 | 120 |
Figure S396. Get High-res Image Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.27e-23 (Fisher's exact test), Q value = 3.5e-20
Table S397. Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 12(4Q34.3) CNV | 9 | 10 | 6 | 87 |
| DEL PEAK 12(4Q34.3) WILD-TYPE | 184 | 69 | 21 | 97 |
Figure S397. Get High-res Image Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.21e-10 (Fisher's exact test), Q value = 9.8e-08
Table S398. Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 12(4Q34.3) CNV | 65 | 7 | 25 |
| DEL PEAK 12(4Q34.3) WILD-TYPE | 104 | 109 | 49 |
Figure S398. Get High-res Image Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 5.25e-11 (Fisher's exact test), Q value = 4.3e-08
Table S399. Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 12(4Q34.3) CNV | 8 | 79 | 10 |
| DEL PEAK 12(4Q34.3) WILD-TYPE | 109 | 118 | 35 |
Figure S399. Get High-res Image Gene #60: 'Del Peak 12(4q34.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 8.55e-49 (Chi-square test), Q value = 9.8e-46
Table S400. Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 13(5Q11.2) CNV | 0 | 11 | 87 | 2 | 0 |
| DEL PEAK 13(5Q11.2) WILD-TYPE | 290 | 29 | 52 | 15 | 6 |
Figure S400. Get High-res Image Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.97e-16 (Fisher's exact test), Q value = 2.9e-13
Table S401. Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 13(5Q11.2) CNV | 62 | 17 | 6 |
| DEL PEAK 13(5Q11.2) WILD-TYPE | 81 | 67 | 144 |
Figure S401. Get High-res Image Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 7.39e-17 (Fisher's exact test), Q value = 7.3e-14
Table S402. Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 13(5Q11.2) CNV | 49 | 2 | 3 |
| DEL PEAK 13(5Q11.2) WILD-TYPE | 93 | 105 | 110 |
Figure S402. Get High-res Image Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.24e-17 (Fisher's exact test), Q value = 3.2e-14
Table S403. Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 13(5Q11.2) CNV | 0 | 1 | 4 | 49 |
| DEL PEAK 13(5Q11.2) WILD-TYPE | 65 | 91 | 61 | 91 |
Figure S403. Get High-res Image Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.5e-19 (Fisher's exact test), Q value = 3.6e-16
Table S404. Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 13(5Q11.2) CNV | 82 | 11 | 6 |
| DEL PEAK 13(5Q11.2) WILD-TYPE | 125 | 133 | 126 |
Figure S404. Get High-res Image Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.56e-18 (Fisher's exact test), Q value = 3.6e-15
Table S405. Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 13(5Q11.2) CNV | 10 | 8 | 5 | 76 |
| DEL PEAK 13(5Q11.2) WILD-TYPE | 183 | 71 | 22 | 108 |
Figure S405. Get High-res Image Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.67e-07 (Fisher's exact test), Q value = 0.00024
Table S406. Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 13(5Q11.2) CNV | 58 | 9 | 17 |
| DEL PEAK 13(5Q11.2) WILD-TYPE | 111 | 107 | 57 |
Figure S406. Get High-res Image Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 3.8e-08 (Fisher's exact test), Q value = 2.7e-05
Table S407. Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 13(5Q11.2) CNV | 8 | 67 | 9 |
| DEL PEAK 13(5Q11.2) WILD-TYPE | 109 | 130 | 36 |
Figure S407. Get High-res Image Gene #61: 'Del Peak 13(5q11.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 9.63e-15 (Chi-square test), Q value = 9e-12
Table S408. Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 14(6Q26) CNV | 4 | 4 | 36 | 0 | 0 |
| DEL PEAK 14(6Q26) WILD-TYPE | 286 | 36 | 103 | 17 | 6 |
Figure S408. Get High-res Image Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.33e-08 (Fisher's exact test), Q value = 3.1e-05
Table S409. Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 14(6Q26) CNV | 27 | 10 | 1 |
| DEL PEAK 14(6Q26) WILD-TYPE | 116 | 74 | 149 |
Figure S409. Get High-res Image Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.29e-06 (Fisher's exact test), Q value = 0.0014
Table S410. Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 14(6Q26) CNV | 21 | 1 | 2 |
| DEL PEAK 14(6Q26) WILD-TYPE | 121 | 106 | 111 |
Figure S410. Get High-res Image Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 7.75e-05 (Fisher's exact test), Q value = 0.04
Table S411. Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 14(6Q26) CNV | 2 | 1 | 1 | 20 |
| DEL PEAK 14(6Q26) WILD-TYPE | 63 | 91 | 64 | 120 |
Figure S411. Get High-res Image Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.15e-08 (Fisher's exact test), Q value = 4.3e-05
Table S412. Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 14(6Q26) CNV | 36 | 3 | 4 |
| DEL PEAK 14(6Q26) WILD-TYPE | 171 | 141 | 128 |
Figure S412. Get High-res Image Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.36e-10 (Fisher's exact test), Q value = 1.1e-07
Table S413. Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 14(6Q26) CNV | 1 | 5 | 1 | 36 |
| DEL PEAK 14(6Q26) WILD-TYPE | 192 | 74 | 26 | 148 |
Figure S413. Get High-res Image Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000131 (Fisher's exact test), Q value = 0.065
Table S414. Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 14(6Q26) CNV | 26 | 2 | 10 |
| DEL PEAK 14(6Q26) WILD-TYPE | 143 | 114 | 64 |
Figure S414. Get High-res Image Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.28e-05 (Fisher's exact test), Q value = 0.013
Table S415. Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 14(6Q26) CNV | 2 | 33 | 3 |
| DEL PEAK 14(6Q26) WILD-TYPE | 115 | 164 | 42 |
Figure S415. Get High-res Image Gene #62: 'Del Peak 14(6q26)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4.17e-05 (Fisher's exact test), Q value = 0.022
Table S416. Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 15(7P22.3) CNV | 0 | 0 | 7 |
| DEL PEAK 15(7P22.3) WILD-TYPE | 19 | 19 | 8 |
Figure S416. Get High-res Image Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 4.17e-31 (Chi-square test), Q value = 4.6e-28
Table S417. Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 15(7P22.3) CNV | 4 | 2 | 61 | 0 | 1 |
| DEL PEAK 15(7P22.3) WILD-TYPE | 286 | 38 | 78 | 17 | 5 |
Figure S417. Get High-res Image Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.48e-10 (Fisher's exact test), Q value = 2e-07
Table S418. Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 15(7P22.3) CNV | 42 | 12 | 4 |
| DEL PEAK 15(7P22.3) WILD-TYPE | 101 | 72 | 146 |
Figure S418. Get High-res Image Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 5.12e-14 (Fisher's exact test), Q value = 4.7e-11
Table S419. Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 15(7P22.3) CNV | 41 | 2 | 2 |
| DEL PEAK 15(7P22.3) WILD-TYPE | 101 | 105 | 111 |
Figure S419. Get High-res Image Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.07e-15 (Fisher's exact test), Q value = 3.9e-12
Table S420. Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 15(7P22.3) CNV | 2 | 0 | 1 | 42 |
| DEL PEAK 15(7P22.3) WILD-TYPE | 63 | 92 | 64 | 98 |
Figure S420. Get High-res Image Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.35e-14 (Fisher's exact test), Q value = 1.3e-11
Table S421. Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 15(7P22.3) CNV | 58 | 6 | 3 |
| DEL PEAK 15(7P22.3) WILD-TYPE | 149 | 138 | 129 |
Figure S421. Get High-res Image Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.5e-13 (Fisher's exact test), Q value = 1.4e-10
Table S422. Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 15(7P22.3) CNV | 5 | 6 | 2 | 54 |
| DEL PEAK 15(7P22.3) WILD-TYPE | 188 | 73 | 25 | 130 |
Figure S422. Get High-res Image Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.89e-05 (Fisher's exact test), Q value = 0.031
Table S423. Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 15(7P22.3) CNV | 37 | 5 | 13 |
| DEL PEAK 15(7P22.3) WILD-TYPE | 132 | 111 | 61 |
Figure S423. Get High-res Image Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.01e-05 (Fisher's exact test), Q value = 0.006
Table S424. Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 15(7P22.3) CNV | 6 | 46 | 3 |
| DEL PEAK 15(7P22.3) WILD-TYPE | 111 | 151 | 42 |
Figure S424. Get High-res Image Gene #63: 'Del Peak 15(7p22.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3.24e-21 (Chi-square test), Q value = 3.4e-18
Table S425. Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 16(7Q11.22) CNV | 0 | 0 | 38 | 0 | 1 |
| DEL PEAK 16(7Q11.22) WILD-TYPE | 290 | 40 | 101 | 17 | 5 |
Figure S425. Get High-res Image Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.93e-07 (Fisher's exact test), Q value = 0.00013
Table S426. Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 16(7Q11.22) CNV | 25 | 9 | 1 |
| DEL PEAK 16(7Q11.22) WILD-TYPE | 118 | 75 | 149 |
Figure S426. Get High-res Image Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.89e-09 (Fisher's exact test), Q value = 3.7e-06
Table S427. Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 16(7Q11.22) CNV | 23 | 1 | 0 |
| DEL PEAK 16(7Q11.22) WILD-TYPE | 119 | 106 | 113 |
Figure S427. Get High-res Image Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.5e-09 (Fisher's exact test), Q value = 1.2e-06
Table S428. Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 16(7Q11.22) CNV | 0 | 0 | 0 | 24 |
| DEL PEAK 16(7Q11.22) WILD-TYPE | 65 | 92 | 65 | 116 |
Figure S428. Get High-res Image Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.32e-08 (Fisher's exact test), Q value = 1.7e-05
Table S429. Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 16(7Q11.22) CNV | 33 | 4 | 1 |
| DEL PEAK 16(7Q11.22) WILD-TYPE | 174 | 140 | 131 |
Figure S429. Get High-res Image Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5.09e-08 (Fisher's exact test), Q value = 3.6e-05
Table S430. Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 16(7Q11.22) CNV | 4 | 1 | 1 | 32 |
| DEL PEAK 16(7Q11.22) WILD-TYPE | 189 | 78 | 26 | 152 |
Figure S430. Get High-res Image Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000145 (Fisher's exact test), Q value = 0.072
Table S431. Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 16(7Q11.22) CNV | 4 | 29 | 0 |
| DEL PEAK 16(7Q11.22) WILD-TYPE | 113 | 168 | 45 |
Figure S431. Get High-res Image Gene #64: 'Del Peak 16(7q11.22)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 5.75e-27 (Chi-square test), Q value = 6.3e-24
Table S432. Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 17(7Q31.1) CNV | 0 | 0 | 47 | 0 | 1 |
| DEL PEAK 17(7Q31.1) WILD-TYPE | 290 | 40 | 92 | 17 | 5 |
Figure S432. Get High-res Image Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.21e-09 (Fisher's exact test), Q value = 1.7e-06
Table S433. Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 17(7Q31.1) CNV | 31 | 10 | 1 |
| DEL PEAK 17(7Q31.1) WILD-TYPE | 112 | 74 | 149 |
Figure S433. Get High-res Image Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.26e-14 (Fisher's exact test), Q value = 3e-11
Table S434. Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 17(7Q31.1) CNV | 32 | 0 | 0 |
| DEL PEAK 17(7Q31.1) WILD-TYPE | 110 | 107 | 113 |
Figure S434. Get High-res Image Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.17e-13 (Fisher's exact test), Q value = 2.9e-10
Table S435. Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 17(7Q31.1) CNV | 0 | 0 | 0 | 32 |
| DEL PEAK 17(7Q31.1) WILD-TYPE | 65 | 92 | 65 | 108 |
Figure S435. Get High-res Image Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.27e-11 (Fisher's exact test), Q value = 1.1e-08
Table S436. Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 17(7Q31.1) CNV | 42 | 4 | 1 |
| DEL PEAK 17(7Q31.1) WILD-TYPE | 165 | 140 | 131 |
Figure S436. Get High-res Image Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.47e-11 (Fisher's exact test), Q value = 1.2e-08
Table S437. Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 17(7Q31.1) CNV | 4 | 1 | 1 | 41 |
| DEL PEAK 17(7Q31.1) WILD-TYPE | 189 | 78 | 26 | 143 |
Figure S437. Get High-res Image Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.78e-05 (Fisher's exact test), Q value = 0.026
Table S438. Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 17(7Q31.1) CNV | 4 | 34 | 1 |
| DEL PEAK 17(7Q31.1) WILD-TYPE | 113 | 163 | 44 |
Figure S438. Get High-res Image Gene #65: 'Del Peak 17(7q31.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 9.35e-30 (Chi-square test), Q value = 1e-26
Table S439. Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 18(7Q36.3) CNV | 1 | 1 | 54 | 0 | 1 |
| DEL PEAK 18(7Q36.3) WILD-TYPE | 289 | 39 | 85 | 17 | 5 |
Figure S439. Get High-res Image Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.66e-10 (Fisher's exact test), Q value = 1.3e-07
Table S440. Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 18(7Q36.3) CNV | 34 | 12 | 1 |
| DEL PEAK 18(7Q36.3) WILD-TYPE | 109 | 72 | 149 |
Figure S440. Get High-res Image Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.29e-18 (Fisher's exact test), Q value = 1.3e-15
Table S441. Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 18(7Q36.3) CNV | 41 | 0 | 0 |
| DEL PEAK 18(7Q36.3) WILD-TYPE | 101 | 107 | 113 |
Figure S441. Get High-res Image Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5.93e-16 (Fisher's exact test), Q value = 5.7e-13
Table S442. Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 18(7Q36.3) CNV | 0 | 0 | 1 | 40 |
| DEL PEAK 18(7Q36.3) WILD-TYPE | 65 | 92 | 64 | 100 |
Figure S442. Get High-res Image Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.2e-15 (Fisher's exact test), Q value = 5.8e-12
Table S443. Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 18(7Q36.3) CNV | 51 | 4 | 1 |
| DEL PEAK 18(7Q36.3) WILD-TYPE | 156 | 140 | 131 |
Figure S443. Get High-res Image Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.81e-15 (Fisher's exact test), Q value = 1.7e-12
Table S444. Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 18(7Q36.3) CNV | 4 | 1 | 1 | 50 |
| DEL PEAK 18(7Q36.3) WILD-TYPE | 189 | 78 | 26 | 134 |
Figure S444. Get High-res Image Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 8.13e-05 (Fisher's exact test), Q value = 0.042
Table S445. Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 18(7Q36.3) CNV | 31 | 3 | 10 |
| DEL PEAK 18(7Q36.3) WILD-TYPE | 138 | 113 | 64 |
Figure S445. Get High-res Image Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.85e-07 (Fisher's exact test), Q value = 0.00019
Table S446. Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 18(7Q36.3) CNV | 4 | 40 | 0 |
| DEL PEAK 18(7Q36.3) WILD-TYPE | 113 | 157 | 45 |
Figure S446. Get High-res Image Gene #66: 'Del Peak 18(7q36.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000218 (Fisher's exact test), Q value = 0.11
Table S447. Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 19(8P23.2) CNV | 0 | 0 | 6 |
| DEL PEAK 19(8P23.2) WILD-TYPE | 19 | 19 | 9 |
Figure S447. Get High-res Image Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.03e-40 (Chi-square test), Q value = 1.2e-37
Table S448. Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 19(8P23.2) CNV | 9 | 6 | 85 | 2 | 1 |
| DEL PEAK 19(8P23.2) WILD-TYPE | 281 | 34 | 54 | 15 | 5 |
Figure S448. Get High-res Image Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.04e-21 (Fisher's exact test), Q value = 3.2e-18
Table S449. Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 19(8P23.2) CNV | 67 | 19 | 3 |
| DEL PEAK 19(8P23.2) WILD-TYPE | 76 | 65 | 147 |
Figure S449. Get High-res Image Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 6.45e-17 (Fisher's exact test), Q value = 6.3e-14
Table S450. Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 19(8P23.2) CNV | 52 | 2 | 5 |
| DEL PEAK 19(8P23.2) WILD-TYPE | 90 | 105 | 108 |
Figure S450. Get High-res Image Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5.05e-19 (Fisher's exact test), Q value = 5.2e-16
Table S451. Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 19(8P23.2) CNV | 1 | 1 | 3 | 54 |
| DEL PEAK 19(8P23.2) WILD-TYPE | 64 | 91 | 62 | 86 |
Figure S451. Get High-res Image Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.02e-26 (Fisher's exact test), Q value = 3.3e-23
Table S452. Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 19(8P23.2) CNV | 89 | 7 | 4 |
| DEL PEAK 19(8P23.2) WILD-TYPE | 118 | 137 | 128 |
Figure S452. Get High-res Image Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 6.04e-29 (Fisher's exact test), Q value = 6.7e-26
Table S453. Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 19(8P23.2) CNV | 6 | 4 | 3 | 87 |
| DEL PEAK 19(8P23.2) WILD-TYPE | 187 | 75 | 24 | 97 |
Figure S453. Get High-res Image Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.51e-11 (Fisher's exact test), Q value = 1.3e-08
Table S454. Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 19(8P23.2) CNV | 61 | 4 | 19 |
| DEL PEAK 19(8P23.2) WILD-TYPE | 108 | 112 | 55 |
Figure S454. Get High-res Image Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 9.41e-15 (Fisher's exact test), Q value = 8.8e-12
Table S455. Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 19(8P23.2) CNV | 3 | 75 | 6 |
| DEL PEAK 19(8P23.2) WILD-TYPE | 114 | 122 | 39 |
Figure S455. Get High-res Image Gene #67: 'Del Peak 19(8p23.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.01e-22 (Chi-square test), Q value = 1.1e-19
Table S456. Gene #68: 'Del Peak 20(9p23)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 20(9P23) CNV | 2 | 12 | 49 | 2 | 0 |
| DEL PEAK 20(9P23) WILD-TYPE | 288 | 28 | 90 | 15 | 6 |
Figure S456. Get High-res Image Gene #68: 'Del Peak 20(9p23)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.65e-06 (Fisher's exact test), Q value = 0.001
Table S457. Gene #68: 'Del Peak 20(9p23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 20(9P23) CNV | 32 | 18 | 6 |
| DEL PEAK 20(9P23) WILD-TYPE | 111 | 66 | 144 |
Figure S457. Get High-res Image Gene #68: 'Del Peak 20(9p23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.93e-07 (Fisher's exact test), Q value = 0.00013
Table S458. Gene #68: 'Del Peak 20(9p23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 20(9P23) CNV | 29 | 3 | 3 |
| DEL PEAK 20(9P23) WILD-TYPE | 113 | 104 | 110 |
Figure S458. Get High-res Image Gene #68: 'Del Peak 20(9p23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.29e-09 (Fisher's exact test), Q value = 1e-06
Table S459. Gene #68: 'Del Peak 20(9p23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 20(9P23) CNV | 0 | 1 | 3 | 31 |
| DEL PEAK 20(9P23) WILD-TYPE | 65 | 91 | 62 | 109 |
Figure S459. Get High-res Image Gene #68: 'Del Peak 20(9p23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 8.17e-08 (Fisher's exact test), Q value = 5.6e-05
Table S460. Gene #68: 'Del Peak 20(9p23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 20(9P23) CNV | 46 | 15 | 3 |
| DEL PEAK 20(9P23) WILD-TYPE | 161 | 129 | 129 |
Figure S460. Get High-res Image Gene #68: 'Del Peak 20(9p23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.89e-06 (Fisher's exact test), Q value = 0.0012
Table S461. Gene #68: 'Del Peak 20(9p23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 20(9P23) CNV | 12 | 5 | 3 | 44 |
| DEL PEAK 20(9P23) WILD-TYPE | 181 | 74 | 24 | 140 |
Figure S461. Get High-res Image Gene #68: 'Del Peak 20(9p23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.35e-05 (Fisher's exact test), Q value = 0.013
Table S462. Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 14 | 17 | 12 | 10 |
| DEL PEAK 21(9Q34.11) CNV | 0 | 9 | 0 | 0 |
| DEL PEAK 21(9Q34.11) WILD-TYPE | 14 | 8 | 12 | 10 |
Figure S462. Get High-res Image Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.13e-06 (Fisher's exact test), Q value = 0.00073
Table S463. Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 21(9Q34.11) CNV | 0 | 0 | 9 |
| DEL PEAK 21(9Q34.11) WILD-TYPE | 19 | 19 | 6 |
Figure S463. Get High-res Image Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 5.04e-52 (Chi-square test), Q value = 5.8e-49
Table S464. Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 21(9Q34.11) CNV | 5 | 18 | 97 | 1 | 1 |
| DEL PEAK 21(9Q34.11) WILD-TYPE | 285 | 22 | 42 | 16 | 5 |
Figure S464. Get High-res Image Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.53e-11 (Fisher's exact test), Q value = 1.3e-08
Table S465. Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 21(9Q34.11) CNV | 64 | 25 | 14 |
| DEL PEAK 21(9Q34.11) WILD-TYPE | 79 | 59 | 136 |
Figure S465. Get High-res Image Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 0.000384 (Chi-square test), Q value = 0.18
Table S466. Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 41 | 37 | 39 | 12 | 41 | 24 |
| DEL PEAK 21(9Q34.11) CNV | 8 | 14 | 2 | 2 | 1 | 6 |
| DEL PEAK 21(9Q34.11) WILD-TYPE | 33 | 23 | 37 | 10 | 40 | 18 |
Figure S466. Get High-res Image Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 1.13e-17 (Fisher's exact test), Q value = 1.1e-14
Table S467. Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 21(9Q34.11) CNV | 63 | 6 | 7 |
| DEL PEAK 21(9Q34.11) WILD-TYPE | 79 | 101 | 106 |
Figure S467. Get High-res Image Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.84e-24 (Fisher's exact test), Q value = 5.2e-21
Table S468. Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 21(9Q34.11) CNV | 0 | 2 | 7 | 67 |
| DEL PEAK 21(9Q34.11) WILD-TYPE | 65 | 90 | 58 | 73 |
Figure S468. Get High-res Image Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 5.09e-18 (Fisher's exact test), Q value = 5.1e-15
Table S469. Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 21(9Q34.11) CNV | 91 | 19 | 8 |
| DEL PEAK 21(9Q34.11) WILD-TYPE | 116 | 125 | 124 |
Figure S469. Get High-res Image Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.85e-16 (Fisher's exact test), Q value = 1.8e-13
Table S470. Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 21(9Q34.11) CNV | 17 | 10 | 8 | 83 |
| DEL PEAK 21(9Q34.11) WILD-TYPE | 176 | 69 | 19 | 101 |
Figure S470. Get High-res Image Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 6.64e-05 (Fisher's exact test), Q value = 0.035
Table S471. Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 21(9Q34.11) CNV | 62 | 16 | 22 |
| DEL PEAK 21(9Q34.11) WILD-TYPE | 107 | 100 | 52 |
Figure S471. Get High-res Image Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 6.75e-05 (Fisher's exact test), Q value = 0.035
Table S472. Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 21(9Q34.11) CNV | 16 | 70 | 14 |
| DEL PEAK 21(9Q34.11) WILD-TYPE | 101 | 127 | 31 |
Figure S472. Get High-res Image Gene #69: 'Del Peak 21(9q34.11)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.2e-29 (Chi-square test), Q value = 1.3e-26
Table S473. Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 22(10Q23.31) CNV | 5 | 4 | 61 | 0 | 0 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 285 | 36 | 78 | 17 | 6 |
Figure S473. Get High-res Image Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.54e-08 (Fisher's exact test), Q value = 3.2e-05
Table S474. Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 22(10Q23.31) CNV | 39 | 16 | 6 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 104 | 68 | 144 |
Figure S474. Get High-res Image Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.39e-07 (Fisher's exact test), Q value = 0.00022
Table S475. Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 22(10Q23.31) CNV | 30 | 4 | 3 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 112 | 103 | 110 |
Figure S475. Get High-res Image Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.88e-07 (Fisher's exact test), Q value = 0.00013
Table S476. Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 22(10Q23.31) CNV | 0 | 2 | 6 | 29 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 65 | 90 | 59 | 111 |
Figure S476. Get High-res Image Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.78e-10 (Fisher's exact test), Q value = 1.4e-07
Table S477. Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 22(10Q23.31) CNV | 55 | 8 | 6 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 152 | 136 | 126 |
Figure S477. Get High-res Image Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.84e-09 (Fisher's exact test), Q value = 2.9e-06
Table S478. Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 22(10Q23.31) CNV | 9 | 7 | 3 | 50 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 184 | 72 | 24 | 134 |
Figure S478. Get High-res Image Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 5.44e-06 (Fisher's exact test), Q value = 0.0033
Table S479. Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 22(10Q23.31) CNV | 42 | 5 | 13 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 127 | 111 | 61 |
Figure S479. Get High-res Image Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.000137 (Fisher's exact test), Q value = 0.068
Table S480. Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 22(10Q23.31) CNV | 7 | 46 | 7 |
| DEL PEAK 22(10Q23.31) WILD-TYPE | 110 | 151 | 38 |
Figure S480. Get High-res Image Gene #70: 'Del Peak 22(10q23.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 7.81e-40 (Chi-square test), Q value = 8.8e-37
Table S481. Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 23(11P15.5) CNV | 1 | 11 | 77 | 2 | 2 |
| DEL PEAK 23(11P15.5) WILD-TYPE | 289 | 29 | 62 | 15 | 4 |
Figure S481. Get High-res Image Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 8.12e-17 (Fisher's exact test), Q value = 8e-14
Table S482. Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 23(11P15.5) CNV | 59 | 20 | 4 |
| DEL PEAK 23(11P15.5) WILD-TYPE | 84 | 64 | 146 |
Figure S482. Get High-res Image Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.92e-14 (Fisher's exact test), Q value = 4.5e-11
Table S483. Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 23(11P15.5) CNV | 43 | 2 | 3 |
| DEL PEAK 23(11P15.5) WILD-TYPE | 99 | 105 | 110 |
Figure S483. Get High-res Image Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.77e-16 (Fisher's exact test), Q value = 4.6e-13
Table S484. Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 23(11P15.5) CNV | 1 | 1 | 1 | 45 |
| DEL PEAK 23(11P15.5) WILD-TYPE | 64 | 91 | 64 | 95 |
Figure S484. Get High-res Image Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.21e-16 (Fisher's exact test), Q value = 1.2e-13
Table S485. Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 23(11P15.5) CNV | 75 | 12 | 5 |
| DEL PEAK 23(11P15.5) WILD-TYPE | 132 | 132 | 127 |
Figure S485. Get High-res Image Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 8.65e-17 (Fisher's exact test), Q value = 8.5e-14
Table S486. Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 23(11P15.5) CNV | 13 | 4 | 3 | 72 |
| DEL PEAK 23(11P15.5) WILD-TYPE | 180 | 75 | 24 | 112 |
Figure S486. Get High-res Image Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.99e-06 (Fisher's exact test), Q value = 0.003
Table S487. Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 23(11P15.5) CNV | 57 | 11 | 15 |
| DEL PEAK 23(11P15.5) WILD-TYPE | 112 | 105 | 59 |
Figure S487. Get High-res Image Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.23e-06 (Fisher's exact test), Q value = 0.0014
Table S488. Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 23(11P15.5) CNV | 11 | 65 | 7 |
| DEL PEAK 23(11P15.5) WILD-TYPE | 106 | 132 | 38 |
Figure S488. Get High-res Image Gene #71: 'Del Peak 23(11p15.5)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 7.36e-22 (Chi-square test), Q value = 7.8e-19
Table S489. Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 24(11Q14.1) CNV | 1 | 11 | 47 | 2 | 2 |
| DEL PEAK 24(11Q14.1) WILD-TYPE | 289 | 29 | 92 | 15 | 4 |
Figure S489. Get High-res Image Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.96e-09 (Fisher's exact test), Q value = 1.5e-06
Table S490. Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 24(11Q14.1) CNV | 39 | 14 | 4 |
| DEL PEAK 24(11Q14.1) WILD-TYPE | 104 | 70 | 146 |
Figure S490. Get High-res Image Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.82e-08 (Fisher's exact test), Q value = 2e-05
Table S491. Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 24(11Q14.1) CNV | 28 | 2 | 2 |
| DEL PEAK 24(11Q14.1) WILD-TYPE | 114 | 105 | 111 |
Figure S491. Get High-res Image Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.31e-10 (Fisher's exact test), Q value = 1.8e-07
Table S492. Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 24(11Q14.1) CNV | 1 | 0 | 1 | 30 |
| DEL PEAK 24(11Q14.1) WILD-TYPE | 64 | 92 | 64 | 110 |
Figure S492. Get High-res Image Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.34e-10 (Fisher's exact test), Q value = 1.9e-07
Table S493. Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 24(11Q14.1) CNV | 50 | 9 | 3 |
| DEL PEAK 24(11Q14.1) WILD-TYPE | 157 | 135 | 129 |
Figure S493. Get High-res Image Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.32e-11 (Fisher's exact test), Q value = 1.1e-08
Table S494. Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 24(11Q14.1) CNV | 7 | 4 | 1 | 50 |
| DEL PEAK 24(11Q14.1) WILD-TYPE | 186 | 75 | 26 | 134 |
Figure S494. Get High-res Image Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 7.15e-07 (Fisher's exact test), Q value = 0.00046
Table S495. Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 24(11Q14.1) CNV | 6 | 49 | 2 |
| DEL PEAK 24(11Q14.1) WILD-TYPE | 111 | 148 | 43 |
Figure S495. Get High-res Image Gene #72: 'Del Peak 24(11q14.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4.75e-28 (Chi-square test), Q value = 5.2e-25
Table S496. Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 25(11Q25) CNV | 4 | 15 | 61 | 2 | 2 |
| DEL PEAK 25(11Q25) WILD-TYPE | 286 | 25 | 78 | 15 | 4 |
Figure S496. Get High-res Image Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.25e-13 (Fisher's exact test), Q value = 1.1e-10
Table S497. Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 25(11Q25) CNV | 55 | 14 | 6 |
| DEL PEAK 25(11Q25) WILD-TYPE | 88 | 70 | 144 |
Figure S497. Get High-res Image Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.31e-08 (Fisher's exact test), Q value = 2.4e-05
Table S498. Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 25(11Q25) CNV | 35 | 3 | 6 |
| DEL PEAK 25(11Q25) WILD-TYPE | 107 | 104 | 107 |
Figure S498. Get High-res Image Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5.43e-12 (Fisher's exact test), Q value = 4.7e-09
Table S499. Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 25(11Q25) CNV | 1 | 1 | 3 | 39 |
| DEL PEAK 25(11Q25) WILD-TYPE | 64 | 91 | 62 | 101 |
Figure S499. Get High-res Image Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.14e-12 (Fisher's exact test), Q value = 1e-09
Table S500. Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 25(11Q25) CNV | 65 | 11 | 6 |
| DEL PEAK 25(11Q25) WILD-TYPE | 142 | 133 | 126 |
Figure S500. Get High-res Image Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.84e-13 (Fisher's exact test), Q value = 1.7e-10
Table S501. Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 25(11Q25) CNV | 9 | 7 | 4 | 62 |
| DEL PEAK 25(11Q25) WILD-TYPE | 184 | 72 | 23 | 122 |
Figure S501. Get High-res Image Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.17e-05 (Fisher's exact test), Q value = 0.0068
Table S502. Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 25(11Q25) CNV | 51 | 9 | 15 |
| DEL PEAK 25(11Q25) WILD-TYPE | 118 | 107 | 59 |
Figure S502. Get High-res Image Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.15e-07 (Fisher's exact test), Q value = 7.8e-05
Table S503. Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 25(11Q25) CNV | 7 | 61 | 7 |
| DEL PEAK 25(11Q25) WILD-TYPE | 110 | 136 | 38 |
Figure S503. Get High-res Image Gene #73: 'Del Peak 25(11q25)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.41e-20 (Chi-square test), Q value = 2.5e-17
Table S504. Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 26(12Q23.1) CNV | 0 | 4 | 42 | 2 | 0 |
| DEL PEAK 26(12Q23.1) WILD-TYPE | 290 | 36 | 97 | 15 | 6 |
Figure S504. Get High-res Image Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.72e-10 (Fisher's exact test), Q value = 1.4e-07
Table S505. Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 26(12Q23.1) CNV | 30 | 10 | 0 |
| DEL PEAK 26(12Q23.1) WILD-TYPE | 113 | 74 | 150 |
Figure S505. Get High-res Image Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.97e-07 (Fisher's exact test), Q value = 0.00026
Table S506. Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 26(12Q23.1) CNV | 21 | 1 | 1 |
| DEL PEAK 26(12Q23.1) WILD-TYPE | 121 | 106 | 112 |
Figure S506. Get High-res Image Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.13e-07 (Fisher's exact test), Q value = 7.7e-05
Table S507. Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 26(12Q23.1) CNV | 0 | 1 | 0 | 22 |
| DEL PEAK 26(12Q23.1) WILD-TYPE | 65 | 91 | 65 | 118 |
Figure S507. Get High-res Image Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.08e-10 (Fisher's exact test), Q value = 4.8e-07
Table S508. Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 26(12Q23.1) CNV | 40 | 3 | 3 |
| DEL PEAK 26(12Q23.1) WILD-TYPE | 167 | 141 | 129 |
Figure S508. Get High-res Image Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.6e-13 (Fisher's exact test), Q value = 3.2e-10
Table S509. Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 26(12Q23.1) CNV | 1 | 3 | 1 | 41 |
| DEL PEAK 26(12Q23.1) WILD-TYPE | 192 | 76 | 26 | 143 |
Figure S509. Get High-res Image Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.66e-06 (Fisher's exact test), Q value = 0.0028
Table S510. Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 26(12Q23.1) CNV | 26 | 1 | 13 |
| DEL PEAK 26(12Q23.1) WILD-TYPE | 143 | 115 | 61 |
Figure S510. Get High-res Image Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.42e-06 (Fisher's exact test), Q value = 9e-04
Table S511. Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 26(12Q23.1) CNV | 1 | 35 | 4 |
| DEL PEAK 26(12Q23.1) WILD-TYPE | 116 | 162 | 41 |
Figure S511. Get High-res Image Gene #74: 'Del Peak 26(12q23.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.03e-25 (Chi-square test), Q value = 1.1e-22
Table S512. Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 27(12Q24.33) CNV | 1 | 4 | 52 | 2 | 0 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 289 | 36 | 87 | 15 | 6 |
Figure S512. Get High-res Image Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.34e-11 (Fisher's exact test), Q value = 2.8e-08
Table S513. Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 27(12Q24.33) CNV | 39 | 13 | 2 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 104 | 71 | 148 |
Figure S513. Get High-res Image Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.07e-11 (Fisher's exact test), Q value = 9.1e-09
Table S514. Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 27(12Q24.33) CNV | 29 | 1 | 0 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 113 | 106 | 113 |
Figure S514. Get High-res Image Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.32e-09 (Fisher's exact test), Q value = 1.8e-06
Table S515. Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 27(12Q24.33) CNV | 0 | 1 | 1 | 28 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 65 | 91 | 64 | 112 |
Figure S515. Get High-res Image Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 6.67e-13 (Fisher's exact test), Q value = 5.9e-10
Table S516. Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 27(12Q24.33) CNV | 50 | 3 | 4 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 157 | 141 | 128 |
Figure S516. Get High-res Image Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.94e-14 (Fisher's exact test), Q value = 2.7e-11
Table S517. Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 27(12Q24.33) CNV | 3 | 3 | 2 | 49 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 190 | 76 | 25 | 135 |
Figure S517. Get High-res Image Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.54e-06 (Fisher's exact test), Q value = 0.00098
Table S518. Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 27(12Q24.33) CNV | 38 | 3 | 13 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 131 | 113 | 61 |
Figure S518. Get High-res Image Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.18e-06 (Fisher's exact test), Q value = 0.00075
Table S519. Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 27(12Q24.33) CNV | 3 | 44 | 7 |
| DEL PEAK 27(12Q24.33) WILD-TYPE | 114 | 153 | 38 |
Figure S519. Get High-res Image Gene #75: 'Del Peak 27(12q24.33)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.94e-29 (Chi-square test), Q value = 2.1e-26
Table S520. Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 28(13Q11) CNV | 4 | 17 | 62 | 2 | 1 |
| DEL PEAK 28(13Q11) WILD-TYPE | 286 | 23 | 77 | 15 | 5 |
Figure S520. Get High-res Image Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.17e-09 (Fisher's exact test), Q value = 2.4e-06
Table S521. Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 28(13Q11) CNV | 47 | 17 | 8 |
| DEL PEAK 28(13Q11) WILD-TYPE | 96 | 67 | 142 |
Figure S521. Get High-res Image Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.78e-07 (Fisher's exact test), Q value = 0.00031
Table S522. Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 28(13Q11) CNV | 35 | 5 | 6 |
| DEL PEAK 28(13Q11) WILD-TYPE | 107 | 102 | 107 |
Figure S522. Get High-res Image Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.7e-11 (Fisher's exact test), Q value = 1.4e-08
Table S523. Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 28(13Q11) CNV | 1 | 2 | 3 | 40 |
| DEL PEAK 28(13Q11) WILD-TYPE | 64 | 90 | 62 | 100 |
Figure S523. Get High-res Image Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.01e-09 (Fisher's exact test), Q value = 7.9e-07
Table S524. Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 28(13Q11) CNV | 63 | 13 | 9 |
| DEL PEAK 28(13Q11) WILD-TYPE | 144 | 131 | 123 |
Figure S524. Get High-res Image Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 3.6e-09 (Fisher's exact test), Q value = 2.7e-06
Table S525. Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 28(13Q11) CNV | 13 | 9 | 6 | 57 |
| DEL PEAK 28(13Q11) WILD-TYPE | 180 | 70 | 21 | 127 |
Figure S525. Get High-res Image Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000388 (Fisher's exact test), Q value = 0.18
Table S526. Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 28(13Q11) CNV | 11 | 54 | 8 |
| DEL PEAK 28(13Q11) WILD-TYPE | 106 | 143 | 37 |
Figure S526. Get High-res Image Gene #76: 'Del Peak 28(13q11)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.43e-32 (Chi-square test), Q value = 2.7e-29
Table S527. Gene #77: 'Del Peak 29(13q14.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 29(13Q14.2) CNV | 5 | 19 | 67 | 2 | 1 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 285 | 21 | 72 | 15 | 5 |
Figure S527. Get High-res Image Gene #77: 'Del Peak 29(13q14.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.08e-08 (Fisher's exact test), Q value = 2.9e-05
Table S528. Gene #77: 'Del Peak 29(13q14.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 29(13Q14.2) CNV | 48 | 21 | 11 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 95 | 63 | 139 |
Figure S528. Get High-res Image Gene #77: 'Del Peak 29(13q14.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.16e-06 (Fisher's exact test), Q value = 0.00074
Table S529. Gene #77: 'Del Peak 29(13q14.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 29(13Q14.2) CNV | 35 | 5 | 7 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 107 | 102 | 106 |
Figure S529. Get High-res Image Gene #77: 'Del Peak 29(13q14.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 9.57e-11 (Fisher's exact test), Q value = 7.8e-08
Table S530. Gene #77: 'Del Peak 29(13q14.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 29(13Q14.2) CNV | 2 | 2 | 3 | 40 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 63 | 90 | 62 | 100 |
Figure S530. Get High-res Image Gene #77: 'Del Peak 29(13q14.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.77e-08 (Fisher's exact test), Q value = 2.7e-05
Table S531. Gene #77: 'Del Peak 29(13q14.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 29(13Q14.2) CNV | 65 | 16 | 12 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 142 | 128 | 120 |
Figure S531. Get High-res Image Gene #77: 'Del Peak 29(13q14.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.02e-08 (Fisher's exact test), Q value = 7.5e-06
Table S532. Gene #77: 'Del Peak 29(13q14.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 29(13Q14.2) CNV | 16 | 10 | 7 | 60 |
| DEL PEAK 29(13Q14.2) WILD-TYPE | 177 | 69 | 20 | 124 |
Figure S532. Get High-res Image Gene #77: 'Del Peak 29(13q14.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.28e-22 (Chi-square test), Q value = 1.4e-19
Table S533. Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 30(14Q13.1) CNV | 2 | 6 | 50 | 2 | 2 |
| DEL PEAK 30(14Q13.1) WILD-TYPE | 288 | 34 | 89 | 15 | 4 |
Figure S533. Get High-res Image Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.17e-10 (Fisher's exact test), Q value = 9.5e-08
Table S534. Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 30(14Q13.1) CNV | 41 | 7 | 4 |
| DEL PEAK 30(14Q13.1) WILD-TYPE | 102 | 77 | 146 |
Figure S534. Get High-res Image Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 7.68e-09 (Fisher's exact test), Q value = 5.7e-06
Table S535. Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 30(14Q13.1) CNV | 31 | 2 | 3 |
| DEL PEAK 30(14Q13.1) WILD-TYPE | 111 | 105 | 110 |
Figure S535. Get High-res Image Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.63e-10 (Fisher's exact test), Q value = 1.3e-07
Table S536. Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 30(14Q13.1) CNV | 1 | 1 | 1 | 33 |
| DEL PEAK 30(14Q13.1) WILD-TYPE | 64 | 91 | 64 | 107 |
Figure S536. Get High-res Image Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.33e-09 (Fisher's exact test), Q value = 1e-06
Table S537. Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 30(14Q13.1) CNV | 49 | 5 | 7 |
| DEL PEAK 30(14Q13.1) WILD-TYPE | 158 | 139 | 125 |
Figure S537. Get High-res Image Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 6.18e-12 (Fisher's exact test), Q value = 5.4e-09
Table S538. Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 30(14Q13.1) CNV | 4 | 8 | 1 | 48 |
| DEL PEAK 30(14Q13.1) WILD-TYPE | 189 | 71 | 26 | 136 |
Figure S538. Get High-res Image Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 9.99e-05 (Fisher's exact test), Q value = 0.051
Table S539. Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 30(14Q13.1) CNV | 36 | 5 | 13 |
| DEL PEAK 30(14Q13.1) WILD-TYPE | 133 | 111 | 61 |
Figure S539. Get High-res Image Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 6.28e-05 (Fisher's exact test), Q value = 0.033
Table S540. Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 30(14Q13.1) CNV | 5 | 42 | 7 |
| DEL PEAK 30(14Q13.1) WILD-TYPE | 112 | 155 | 38 |
Figure S540. Get High-res Image Gene #78: 'Del Peak 30(14q13.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.37e-55 (Chi-square test), Q value = 1.6e-52
Table S541. Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 31(15Q15.1) CNV | 4 | 17 | 100 | 0 | 3 |
| DEL PEAK 31(15Q15.1) WILD-TYPE | 286 | 23 | 39 | 17 | 3 |
Figure S541. Get High-res Image Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.5e-18 (Fisher's exact test), Q value = 2.5e-15
Table S542. Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 31(15Q15.1) CNV | 73 | 26 | 9 |
| DEL PEAK 31(15Q15.1) WILD-TYPE | 70 | 58 | 141 |
Figure S542. Get High-res Image Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 3.76e-17 (Fisher's exact test), Q value = 3.7e-14
Table S543. Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 31(15Q15.1) CNV | 60 | 4 | 8 |
| DEL PEAK 31(15Q15.1) WILD-TYPE | 82 | 103 | 105 |
Figure S543. Get High-res Image Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 8.64e-22 (Fisher's exact test), Q value = 9.2e-19
Table S544. Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 31(15Q15.1) CNV | 1 | 1 | 7 | 63 |
| DEL PEAK 31(15Q15.1) WILD-TYPE | 64 | 91 | 58 | 77 |
Figure S544. Get High-res Image Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.16e-23 (Fisher's exact test), Q value = 1.2e-20
Table S545. Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 31(15Q15.1) CNV | 100 | 13 | 9 |
| DEL PEAK 31(15Q15.1) WILD-TYPE | 107 | 131 | 123 |
Figure S545. Get High-res Image Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.75e-22 (Fisher's exact test), Q value = 2.9e-19
Table S546. Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 31(15Q15.1) CNV | 12 | 12 | 7 | 91 |
| DEL PEAK 31(15Q15.1) WILD-TYPE | 181 | 67 | 20 | 93 |
Figure S546. Get High-res Image Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.28e-08 (Fisher's exact test), Q value = 9.4e-06
Table S547. Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 31(15Q15.1) CNV | 66 | 11 | 28 |
| DEL PEAK 31(15Q15.1) WILD-TYPE | 103 | 105 | 46 |
Figure S547. Get High-res Image Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 6.03e-10 (Fisher's exact test), Q value = 4.7e-07
Table S548. Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 31(15Q15.1) CNV | 11 | 83 | 11 |
| DEL PEAK 31(15Q15.1) WILD-TYPE | 106 | 114 | 34 |
Figure S548. Get High-res Image Gene #79: 'Del Peak 31(15q15.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000218 (Fisher's exact test), Q value = 0.11
Table S549. Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 32(15Q23) CNV | 0 | 0 | 6 |
| DEL PEAK 32(15Q23) WILD-TYPE | 19 | 19 | 9 |
Figure S549. Get High-res Image Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 7.28e-42 (Chi-square test), Q value = 8.3e-39
Table S550. Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 32(15Q23) CNV | 3 | 14 | 79 | 0 | 4 |
| DEL PEAK 32(15Q23) WILD-TYPE | 287 | 26 | 60 | 17 | 2 |
Figure S550. Get High-res Image Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5.21e-18 (Fisher's exact test), Q value = 5.3e-15
Table S551. Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 32(15Q23) CNV | 64 | 17 | 5 |
| DEL PEAK 32(15Q23) WILD-TYPE | 79 | 67 | 145 |
Figure S551. Get High-res Image Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.46e-12 (Fisher's exact test), Q value = 1.3e-09
Table S552. Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 32(15Q23) CNV | 45 | 2 | 7 |
| DEL PEAK 32(15Q23) WILD-TYPE | 97 | 105 | 106 |
Figure S552. Get High-res Image Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 9.7e-15 (Fisher's exact test), Q value = 9.1e-12
Table S553. Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 32(15Q23) CNV | 1 | 1 | 5 | 47 |
| DEL PEAK 32(15Q23) WILD-TYPE | 64 | 91 | 60 | 93 |
Figure S553. Get High-res Image Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.26e-16 (Fisher's exact test), Q value = 1.2e-13
Table S554. Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 32(15Q23) CNV | 79 | 11 | 8 |
| DEL PEAK 32(15Q23) WILD-TYPE | 128 | 133 | 124 |
Figure S554. Get High-res Image Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5.94e-18 (Fisher's exact test), Q value = 6e-15
Table S555. Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 32(15Q23) CNV | 8 | 11 | 5 | 74 |
| DEL PEAK 32(15Q23) WILD-TYPE | 185 | 68 | 22 | 110 |
Figure S555. Get High-res Image Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 7.18e-09 (Fisher's exact test), Q value = 5.3e-06
Table S556. Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 32(15Q23) CNV | 60 | 7 | 17 |
| DEL PEAK 32(15Q23) WILD-TYPE | 109 | 109 | 57 |
Figure S556. Get High-res Image Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4.92e-09 (Fisher's exact test), Q value = 3.7e-06
Table S557. Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 32(15Q23) CNV | 7 | 68 | 9 |
| DEL PEAK 32(15Q23) WILD-TYPE | 110 | 129 | 36 |
Figure S557. Get High-res Image Gene #80: 'Del Peak 32(15q23)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.59e-37 (Chi-square test), Q value = 1.8e-34
Table S558. Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 33(16P13.3) CNV | 2 | 8 | 71 | 0 | 0 |
| DEL PEAK 33(16P13.3) WILD-TYPE | 288 | 32 | 68 | 17 | 6 |
Figure S558. Get High-res Image Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.44e-14 (Fisher's exact test), Q value = 1.3e-11
Table S559. Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 33(16P13.3) CNV | 51 | 17 | 3 |
| DEL PEAK 33(16P13.3) WILD-TYPE | 92 | 67 | 147 |
Figure S559. Get High-res Image Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8.49e-14 (Fisher's exact test), Q value = 7.8e-11
Table S560. Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 33(16P13.3) CNV | 40 | 3 | 1 |
| DEL PEAK 33(16P13.3) WILD-TYPE | 102 | 104 | 112 |
Figure S560. Get High-res Image Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.28e-11 (Fisher's exact test), Q value = 1.1e-08
Table S561. Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 33(16P13.3) CNV | 1 | 2 | 2 | 39 |
| DEL PEAK 33(16P13.3) WILD-TYPE | 64 | 90 | 63 | 101 |
Figure S561. Get High-res Image Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.79e-16 (Fisher's exact test), Q value = 4.6e-13
Table S562. Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 33(16P13.3) CNV | 67 | 7 | 5 |
| DEL PEAK 33(16P13.3) WILD-TYPE | 140 | 137 | 127 |
Figure S562. Get High-res Image Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 9.41e-17 (Fisher's exact test), Q value = 9.2e-14
Table S563. Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 33(16P13.3) CNV | 6 | 6 | 3 | 64 |
| DEL PEAK 33(16P13.3) WILD-TYPE | 187 | 73 | 24 | 120 |
Figure S563. Get High-res Image Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 8.62e-06 (Fisher's exact test), Q value = 0.0051
Table S564. Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 33(16P13.3) CNV | 46 | 7 | 17 |
| DEL PEAK 33(16P13.3) WILD-TYPE | 123 | 109 | 57 |
Figure S564. Get High-res Image Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.71e-07 (Fisher's exact test), Q value = 0.00018
Table S565. Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 33(16P13.3) CNV | 7 | 58 | 5 |
| DEL PEAK 33(16P13.3) WILD-TYPE | 110 | 139 | 40 |
Figure S565. Get High-res Image Gene #81: 'Del Peak 33(16p13.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 9.8e-05 (Fisher's exact test), Q value = 0.05
Table S566. Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 34(16Q21) CNV | 0 | 1 | 8 |
| DEL PEAK 34(16Q21) WILD-TYPE | 19 | 18 | 7 |
Figure S566. Get High-res Image Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.05e-56 (Chi-square test), Q value = 1.2e-53
Table S567. Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 34(16Q21) CNV | 15 | 14 | 111 | 0 | 0 |
| DEL PEAK 34(16Q21) WILD-TYPE | 275 | 26 | 28 | 17 | 6 |
Figure S567. Get High-res Image Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 5.49e-18 (Fisher's exact test), Q value = 5.5e-15
Table S568. Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 34(16Q21) CNV | 79 | 29 | 13 |
| DEL PEAK 34(16Q21) WILD-TYPE | 64 | 55 | 137 |
Figure S568. Get High-res Image Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 9.4e-18 (Fisher's exact test), Q value = 9.4e-15
Table S569. Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 34(16Q21) CNV | 70 | 7 | 12 |
| DEL PEAK 34(16Q21) WILD-TYPE | 72 | 100 | 101 |
Figure S569. Get High-res Image Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 6.63e-16 (Fisher's exact test), Q value = 6.4e-13
Table S570. Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 34(16Q21) CNV | 9 | 5 | 7 | 68 |
| DEL PEAK 34(16Q21) WILD-TYPE | 56 | 87 | 58 | 72 |
Figure S570. Get High-res Image Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.85e-17 (Fisher's exact test), Q value = 1.8e-14
Table S571. Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 34(16Q21) CNV | 101 | 17 | 18 |
| DEL PEAK 34(16Q21) WILD-TYPE | 106 | 127 | 114 |
Figure S571. Get High-res Image Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.85e-18 (Fisher's exact test), Q value = 1.9e-15
Table S572. Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 34(16Q21) CNV | 23 | 12 | 5 | 96 |
| DEL PEAK 34(16Q21) WILD-TYPE | 170 | 67 | 22 | 88 |
Figure S572. Get High-res Image Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.79e-08 (Fisher's exact test), Q value = 3.4e-05
Table S573. Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 34(16Q21) CNV | 77 | 16 | 26 |
| DEL PEAK 34(16Q21) WILD-TYPE | 92 | 100 | 48 |
Figure S573. Get High-res Image Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.28e-08 (Fisher's exact test), Q value = 1.6e-05
Table S574. Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 34(16Q21) CNV | 16 | 89 | 14 |
| DEL PEAK 34(16Q21) WILD-TYPE | 101 | 108 | 31 |
Figure S574. Get High-res Image Gene #82: 'Del Peak 34(16q21)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000377 (Fisher's exact test), Q value = 0.18
Table S575. Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 35(16Q23.1) CNV | 1 | 2 | 9 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 18 | 17 | 6 |
Figure S575. Get High-res Image Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.34e-57 (Chi-square test), Q value = 2.7e-54
Table S576. Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 35(16Q23.1) CNV | 20 | 14 | 116 | 0 | 0 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 270 | 26 | 23 | 17 | 6 |
Figure S576. Get High-res Image Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.58e-17 (Fisher's exact test), Q value = 4.5e-14
Table S577. Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 35(16Q23.1) CNV | 80 | 30 | 15 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 63 | 54 | 135 |
Figure S577. Get High-res Image Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 7.07e-19 (Fisher's exact test), Q value = 7.3e-16
Table S578. Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 35(16Q23.1) CNV | 76 | 9 | 13 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 66 | 98 | 100 |
Figure S578. Get High-res Image Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.83e-14 (Fisher's exact test), Q value = 1.7e-11
Table S579. Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 35(16Q23.1) CNV | 10 | 7 | 10 | 71 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 55 | 85 | 55 | 69 |
Figure S579. Get High-res Image Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.7e-18 (Fisher's exact test), Q value = 1.7e-15
Table S580. Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 35(16Q23.1) CNV | 107 | 19 | 19 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 100 | 125 | 113 |
Figure S580. Get High-res Image Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 7.37e-21 (Fisher's exact test), Q value = 7.8e-18
Table S581. Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 35(16Q23.1) CNV | 24 | 13 | 5 | 103 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 169 | 66 | 22 | 81 |
Figure S581. Get High-res Image Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.66e-08 (Fisher's exact test), Q value = 1.2e-05
Table S582. Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 35(16Q23.1) CNV | 78 | 16 | 29 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 91 | 100 | 45 |
Figure S582. Get High-res Image Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4.78e-10 (Fisher's exact test), Q value = 3.8e-07
Table S583. Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 35(16Q23.1) CNV | 16 | 95 | 12 |
| DEL PEAK 35(16Q23.1) WILD-TYPE | 101 | 102 | 33 |
Figure S583. Get High-res Image Gene #83: 'Del Peak 35(16q23.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 9.8e-05 (Fisher's exact test), Q value = 0.05
Table S584. Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 36(17P13.3) CNV | 1 | 0 | 8 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 18 | 19 | 7 |
Figure S584. Get High-res Image Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 7.29e-49 (Chi-square test), Q value = 8.3e-46
Table S585. Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 36(17P13.3) CNV | 3 | 14 | 89 | 0 | 0 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 287 | 26 | 50 | 17 | 6 |
Figure S585. Get High-res Image Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.14e-11 (Fisher's exact test), Q value = 1.8e-08
Table S586. Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 36(17P13.3) CNV | 57 | 21 | 10 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 86 | 63 | 140 |
Figure S586. Get High-res Image Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 7.12e-17 (Fisher's exact test), Q value = 7e-14
Table S587. Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 36(17P13.3) CNV | 54 | 3 | 5 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 88 | 104 | 108 |
Figure S587. Get High-res Image Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.58e-19 (Fisher's exact test), Q value = 1.6e-16
Table S588. Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 36(17P13.3) CNV | 1 | 0 | 6 | 55 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 64 | 92 | 59 | 85 |
Figure S588. Get High-res Image Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.4e-15 (Fisher's exact test), Q value = 1.3e-12
Table S589. Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 36(17P13.3) CNV | 80 | 16 | 7 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 127 | 128 | 125 |
Figure S589. Get High-res Image Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.99e-12 (Fisher's exact test), Q value = 1.7e-09
Table S590. Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 36(17P13.3) CNV | 17 | 9 | 5 | 72 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 176 | 70 | 22 | 112 |
Figure S590. Get High-res Image Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000328 (Fisher's exact test), Q value = 0.16
Table S591. Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 36(17P13.3) CNV | 51 | 13 | 21 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 118 | 103 | 53 |
Figure S591. Get High-res Image Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 0.000114 (Fisher's exact test), Q value = 0.057
Table S592. Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 36(17P13.3) CNV | 13 | 62 | 10 |
| DEL PEAK 36(17P13.3) WILD-TYPE | 104 | 135 | 35 |
Figure S592. Get High-res Image Gene #84: 'Del Peak 36(17p13.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000187 (Fisher's exact test), Q value = 0.091
Table S593. Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 14 | 17 | 12 | 10 |
| DEL PEAK 37(17P12) CNV | 0 | 9 | 1 | 0 |
| DEL PEAK 37(17P12) WILD-TYPE | 14 | 8 | 11 | 10 |
Figure S593. Get High-res Image Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.94e-05 (Fisher's exact test), Q value = 0.011
Table S594. Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 37(17P12) CNV | 1 | 0 | 9 |
| DEL PEAK 37(17P12) WILD-TYPE | 18 | 19 | 6 |
Figure S594. Get High-res Image Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.57e-58 (Chi-square test), Q value = 3e-55
Table S595. Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 37(17P12) CNV | 4 | 13 | 103 | 0 | 1 |
| DEL PEAK 37(17P12) WILD-TYPE | 286 | 27 | 36 | 17 | 5 |
Figure S595. Get High-res Image Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.65e-15 (Fisher's exact test), Q value = 1.6e-12
Table S596. Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 37(17P12) CNV | 68 | 24 | 10 |
| DEL PEAK 37(17P12) WILD-TYPE | 75 | 60 | 140 |
Figure S596. Get High-res Image Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.64e-25 (Fisher's exact test), Q value = 2.9e-22
Table S597. Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 37(17P12) CNV | 69 | 3 | 4 |
| DEL PEAK 37(17P12) WILD-TYPE | 73 | 104 | 109 |
Figure S597. Get High-res Image Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5.65e-29 (Fisher's exact test), Q value = 6.2e-26
Table S598. Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 37(17P12) CNV | 1 | 0 | 4 | 71 |
| DEL PEAK 37(17P12) WILD-TYPE | 64 | 92 | 61 | 69 |
Figure S598. Get High-res Image Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.12e-20 (Fisher's exact test), Q value = 1.2e-17
Table S599. Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 37(17P12) CNV | 93 | 18 | 6 |
| DEL PEAK 37(17P12) WILD-TYPE | 114 | 126 | 126 |
Figure S599. Get High-res Image Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.14e-18 (Fisher's exact test), Q value = 1.2e-15
Table S600. Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 37(17P12) CNV | 17 | 9 | 4 | 87 |
| DEL PEAK 37(17P12) WILD-TYPE | 176 | 70 | 23 | 97 |
Figure S600. Get High-res Image Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.22e-05 (Fisher's exact test), Q value = 0.0072
Table S601. Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 37(17P12) CNV | 60 | 14 | 25 |
| DEL PEAK 37(17P12) WILD-TYPE | 109 | 102 | 49 |
Figure S601. Get High-res Image Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.43e-06 (Fisher's exact test), Q value = 0.0015
Table S602. Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 37(17P12) CNV | 14 | 74 | 11 |
| DEL PEAK 37(17P12) WILD-TYPE | 103 | 123 | 34 |
Figure S602. Get High-res Image Gene #85: 'Del Peak 37(17p12)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000111 (Fisher's exact test), Q value = 0.056
Table S603. Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 14 | 17 | 12 | 10 |
| DEL PEAK 38(17P11.2) CNV | 0 | 8 | 0 | 0 |
| DEL PEAK 38(17P11.2) WILD-TYPE | 14 | 9 | 12 | 10 |
Figure S603. Get High-res Image Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 7.26e-06 (Fisher's exact test), Q value = 0.0043
Table S604. Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 38(17P11.2) CNV | 0 | 0 | 8 |
| DEL PEAK 38(17P11.2) WILD-TYPE | 19 | 19 | 7 |
Figure S604. Get High-res Image Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 3.67e-52 (Chi-square test), Q value = 4.2e-49
Table S605. Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 38(17P11.2) CNV | 2 | 12 | 92 | 0 | 0 |
| DEL PEAK 38(17P11.2) WILD-TYPE | 288 | 28 | 47 | 17 | 6 |
Figure S605. Get High-res Image Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.5e-13 (Fisher's exact test), Q value = 1.4e-10
Table S606. Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 38(17P11.2) CNV | 61 | 22 | 9 |
| DEL PEAK 38(17P11.2) WILD-TYPE | 82 | 62 | 141 |
Figure S606. Get High-res Image Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.28e-19 (Fisher's exact test), Q value = 1.3e-16
Table S607. Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 38(17P11.2) CNV | 58 | 3 | 4 |
| DEL PEAK 38(17P11.2) WILD-TYPE | 84 | 104 | 109 |
Figure S607. Get High-res Image Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 5.19e-24 (Fisher's exact test), Q value = 5.6e-21
Table S608. Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 38(17P11.2) CNV | 1 | 0 | 3 | 61 |
| DEL PEAK 38(17P11.2) WILD-TYPE | 64 | 92 | 62 | 79 |
Figure S608. Get High-res Image Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.15e-16 (Fisher's exact test), Q value = 1.1e-13
Table S609. Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 38(17P11.2) CNV | 81 | 16 | 6 |
| DEL PEAK 38(17P11.2) WILD-TYPE | 126 | 128 | 126 |
Figure S609. Get High-res Image Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 9.38e-14 (Fisher's exact test), Q value = 8.6e-11
Table S610. Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 38(17P11.2) CNV | 16 | 9 | 4 | 74 |
| DEL PEAK 38(17P11.2) WILD-TYPE | 177 | 70 | 23 | 110 |
Figure S610. Get High-res Image Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.03e-05 (Fisher's exact test), Q value = 0.022
Table S611. Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 38(17P11.2) CNV | 57 | 13 | 20 |
| DEL PEAK 38(17P11.2) WILD-TYPE | 112 | 103 | 54 |
Figure S611. Get High-res Image Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 2.56e-05 (Fisher's exact test), Q value = 0.014
Table S612. Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 38(17P11.2) CNV | 13 | 66 | 11 |
| DEL PEAK 38(17P11.2) WILD-TYPE | 104 | 131 | 34 |
Figure S612. Get High-res Image Gene #86: 'Del Peak 38(17p11.2)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4.17e-05 (Fisher's exact test), Q value = 0.022
Table S613. Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 39(17Q11.2) CNV | 0 | 0 | 7 |
| DEL PEAK 39(17Q11.2) WILD-TYPE | 19 | 19 | 8 |
Figure S613. Get High-res Image Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 6.26e-44 (Chi-square test), Q value = 7.1e-41
Table S614. Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 39(17Q11.2) CNV | 2 | 13 | 81 | 0 | 0 |
| DEL PEAK 39(17Q11.2) WILD-TYPE | 288 | 27 | 58 | 17 | 6 |
Figure S614. Get High-res Image Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 9.34e-08 (Fisher's exact test), Q value = 6.4e-05
Table S615. Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 39(17Q11.2) CNV | 49 | 20 | 12 |
| DEL PEAK 39(17Q11.2) WILD-TYPE | 94 | 64 | 138 |
Figure S615. Get High-res Image Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.47e-14 (Fisher's exact test), Q value = 2.3e-11
Table S616. Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 39(17Q11.2) CNV | 50 | 3 | 6 |
| DEL PEAK 39(17Q11.2) WILD-TYPE | 92 | 104 | 107 |
Figure S616. Get High-res Image Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 4.51e-17 (Fisher's exact test), Q value = 4.5e-14
Table S617. Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 39(17Q11.2) CNV | 1 | 1 | 5 | 52 |
| DEL PEAK 39(17Q11.2) WILD-TYPE | 64 | 91 | 60 | 88 |
Figure S617. Get High-res Image Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.74e-10 (Fisher's exact test), Q value = 2.2e-07
Table S618. Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 39(17Q11.2) CNV | 67 | 17 | 8 |
| DEL PEAK 39(17Q11.2) WILD-TYPE | 140 | 127 | 124 |
Figure S618. Get High-res Image Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5.88e-10 (Fisher's exact test), Q value = 4.6e-07
Table S619. Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 39(17Q11.2) CNV | 18 | 6 | 5 | 63 |
| DEL PEAK 39(17Q11.2) WILD-TYPE | 175 | 73 | 22 | 121 |
Figure S619. Get High-res Image Gene #87: 'Del Peak 39(17q11.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.35e-05 (Fisher's exact test), Q value = 0.013
Table S620. Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 14 | 17 | 12 | 10 |
| DEL PEAK 40(17Q21.2) CNV | 0 | 9 | 0 | 0 |
| DEL PEAK 40(17Q21.2) WILD-TYPE | 14 | 8 | 12 | 10 |
Figure S620. Get High-res Image Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.13e-06 (Fisher's exact test), Q value = 0.00073
Table S621. Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 40(17Q21.2) CNV | 0 | 0 | 9 |
| DEL PEAK 40(17Q21.2) WILD-TYPE | 19 | 19 | 6 |
Figure S621. Get High-res Image Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.03e-48 (Chi-square test), Q value = 2.3e-45
Table S622. Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 40(17Q21.2) CNV | 1 | 12 | 87 | 1 | 0 |
| DEL PEAK 40(17Q21.2) WILD-TYPE | 289 | 28 | 52 | 16 | 6 |
Figure S622. Get High-res Image Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.57e-09 (Fisher's exact test), Q value = 1.2e-06
Table S623. Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 40(17Q21.2) CNV | 52 | 24 | 11 |
| DEL PEAK 40(17Q21.2) WILD-TYPE | 91 | 60 | 139 |
Figure S623. Get High-res Image Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.38e-14 (Fisher's exact test), Q value = 1.3e-11
Table S624. Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 40(17Q21.2) CNV | 49 | 3 | 5 |
| DEL PEAK 40(17Q21.2) WILD-TYPE | 93 | 104 | 108 |
Figure S624. Get High-res Image Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 7.99e-19 (Fisher's exact test), Q value = 8.2e-16
Table S625. Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 40(17Q21.2) CNV | 1 | 0 | 4 | 52 |
| DEL PEAK 40(17Q21.2) WILD-TYPE | 64 | 92 | 61 | 88 |
Figure S625. Get High-res Image Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.7e-12 (Fisher's exact test), Q value = 1.5e-09
Table S626. Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 40(17Q21.2) CNV | 72 | 17 | 7 |
| DEL PEAK 40(17Q21.2) WILD-TYPE | 135 | 127 | 125 |
Figure S626. Get High-res Image Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.46e-11 (Fisher's exact test), Q value = 2.1e-08
Table S627. Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 40(17Q21.2) CNV | 18 | 6 | 5 | 67 |
| DEL PEAK 40(17Q21.2) WILD-TYPE | 175 | 73 | 22 | 117 |
Figure S627. Get High-res Image Gene #88: 'Del Peak 40(17q21.2)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 6.45e-34 (Chi-square test), Q value = 7.2e-31
Table S628. Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 41(18Q23) CNV | 2 | 17 | 68 | 3 | 1 |
| DEL PEAK 41(18Q23) WILD-TYPE | 288 | 23 | 71 | 14 | 5 |
Figure S628. Get High-res Image Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.23e-11 (Fisher's exact test), Q value = 1.1e-08
Table S629. Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 41(18Q23) CNV | 54 | 16 | 8 |
| DEL PEAK 41(18Q23) WILD-TYPE | 89 | 68 | 142 |
Figure S629. Get High-res Image Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.88e-11 (Fisher's exact test), Q value = 4e-08
Table S630. Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 41(18Q23) CNV | 41 | 3 | 5 |
| DEL PEAK 41(18Q23) WILD-TYPE | 101 | 104 | 108 |
Figure S630. Get High-res Image Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.72e-13 (Fisher's exact test), Q value = 2.5e-10
Table S631. Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 41(18Q23) CNV | 1 | 1 | 4 | 43 |
| DEL PEAK 41(18Q23) WILD-TYPE | 64 | 91 | 61 | 97 |
Figure S631. Get High-res Image Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.6e-12 (Fisher's exact test), Q value = 1.4e-09
Table S632. Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 41(18Q23) CNV | 69 | 12 | 8 |
| DEL PEAK 41(18Q23) WILD-TYPE | 138 | 132 | 124 |
Figure S632. Get High-res Image Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 4.5e-14 (Fisher's exact test), Q value = 4.1e-11
Table S633. Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 41(18Q23) CNV | 11 | 6 | 7 | 65 |
| DEL PEAK 41(18Q23) WILD-TYPE | 182 | 73 | 20 | 119 |
Figure S633. Get High-res Image Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.02e-05 (Fisher's exact test), Q value = 0.017
Table S634. Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 41(18Q23) CNV | 10 | 58 | 9 |
| DEL PEAK 41(18Q23) WILD-TYPE | 107 | 139 | 36 |
Figure S634. Get High-res Image Gene #89: 'Del Peak 41(18q23)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 9.09e-06 (Fisher's exact test), Q value = 0.0054
Table S635. Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 14 | 17 | 12 | 10 |
| DEL PEAK 42(19P13.3) CNV | 1 | 11 | 0 | 0 |
| DEL PEAK 42(19P13.3) WILD-TYPE | 13 | 6 | 12 | 10 |
Figure S635. Get High-res Image Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.96e-07 (Fisher's exact test), Q value = 0.00013
Table S636. Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 42(19P13.3) CNV | 1 | 0 | 11 |
| DEL PEAK 42(19P13.3) WILD-TYPE | 18 | 19 | 4 |
Figure S636. Get High-res Image Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 6e-78 (Chi-square test), Q value = 6.9e-75
Table S637. Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 42(19P13.3) CNV | 1 | 13 | 124 | 2 | 1 |
| DEL PEAK 42(19P13.3) WILD-TYPE | 289 | 27 | 15 | 15 | 5 |
Figure S637. Get High-res Image Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 2.44e-30 (Fisher's exact test), Q value = 2.7e-27
Table S638. Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 42(19P13.3) CNV | 90 | 25 | 5 |
| DEL PEAK 42(19P13.3) WILD-TYPE | 53 | 59 | 145 |
Figure S638. Get High-res Image Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8.99e-06 (Chi-square test), Q value = 0.0053
Table S639. Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
|---|---|---|---|---|---|---|
| ALL | 41 | 37 | 39 | 12 | 41 | 24 |
| DEL PEAK 42(19P13.3) CNV | 6 | 15 | 2 | 0 | 1 | 7 |
| DEL PEAK 42(19P13.3) WILD-TYPE | 35 | 22 | 37 | 12 | 40 | 17 |
Figure S639. Get High-res Image Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #5: 'RPPA_CNMF'
P value = 4.05e-36 (Fisher's exact test), Q value = 4.6e-33
Table S640. Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 42(19P13.3) CNV | 82 | 2 | 2 |
| DEL PEAK 42(19P13.3) WILD-TYPE | 60 | 105 | 111 |
Figure S640. Get High-res Image Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.96e-36 (Fisher's exact test), Q value = 2.2e-33
Table S641. Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 42(19P13.3) CNV | 1 | 0 | 3 | 82 |
| DEL PEAK 42(19P13.3) WILD-TYPE | 64 | 92 | 62 | 58 |
Figure S641. Get High-res Image Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 2.67e-35 (Fisher's exact test), Q value = 3e-32
Table S642. Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 42(19P13.3) CNV | 118 | 12 | 6 |
| DEL PEAK 42(19P13.3) WILD-TYPE | 89 | 132 | 126 |
Figure S642. Get High-res Image Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 4.55e-37 (Fisher's exact test), Q value = 5.1e-34
Table S643. Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 42(19P13.3) CNV | 11 | 7 | 5 | 113 |
| DEL PEAK 42(19P13.3) WILD-TYPE | 182 | 72 | 22 | 71 |
Figure S643. Get High-res Image Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.39e-12 (Fisher's exact test), Q value = 3e-09
Table S644. Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 42(19P13.3) CNV | 79 | 10 | 28 |
| DEL PEAK 42(19P13.3) WILD-TYPE | 90 | 106 | 46 |
Figure S644. Get High-res Image Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4.52e-14 (Fisher's exact test), Q value = 4.2e-11
Table S645. Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 42(19P13.3) CNV | 10 | 96 | 11 |
| DEL PEAK 42(19P13.3) WILD-TYPE | 107 | 101 | 34 |
Figure S645. Get High-res Image Gene #90: 'Del Peak 42(19p13.3)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1.3e-15 (Chi-square test), Q value = 1.2e-12
Table S646. Gene #91: 'Del Peak 43(19p12)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 43(19P12) CNV | 2 | 12 | 33 | 2 | 0 |
| DEL PEAK 43(19P12) WILD-TYPE | 288 | 28 | 106 | 15 | 6 |
Figure S646. Get High-res Image Gene #91: 'Del Peak 43(19p12)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 9.09e-07 (Fisher's exact test), Q value = 0.00059
Table S647. Gene #91: 'Del Peak 43(19p12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 43(19P12) CNV | 28 | 12 | 3 |
| DEL PEAK 43(19P12) WILD-TYPE | 115 | 72 | 147 |
Figure S647. Get High-res Image Gene #91: 'Del Peak 43(19p12)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.14e-05 (Fisher's exact test), Q value = 0.012
Table S648. Gene #91: 'Del Peak 43(19p12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 43(19P12) CNV | 20 | 1 | 3 |
| DEL PEAK 43(19P12) WILD-TYPE | 122 | 106 | 110 |
Figure S648. Get High-res Image Gene #91: 'Del Peak 43(19p12)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.98e-06 (Fisher's exact test), Q value = 0.0024
Table S649. Gene #91: 'Del Peak 43(19p12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 43(19P12) CNV | 1 | 0 | 2 | 21 |
| DEL PEAK 43(19P12) WILD-TYPE | 64 | 92 | 63 | 119 |
Figure S649. Get High-res Image Gene #91: 'Del Peak 43(19p12)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.04e-06 (Fisher's exact test), Q value = 0.0019
Table S650. Gene #91: 'Del Peak 43(19p12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 43(19P12) CNV | 37 | 5 | 6 |
| DEL PEAK 43(19P12) WILD-TYPE | 170 | 139 | 126 |
Figure S650. Get High-res Image Gene #91: 'Del Peak 43(19p12)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.98e-06 (Fisher's exact test), Q value = 0.0012
Table S651. Gene #91: 'Del Peak 43(19p12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 43(19P12) CNV | 5 | 6 | 3 | 34 |
| DEL PEAK 43(19P12) WILD-TYPE | 188 | 73 | 24 | 150 |
Figure S651. Get High-res Image Gene #91: 'Del Peak 43(19p12)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 9.8e-05 (Fisher's exact test), Q value = 0.05
Table S652. Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 44(19Q13.43) CNV | 1 | 0 | 8 |
| DEL PEAK 44(19Q13.43) WILD-TYPE | 18 | 19 | 7 |
Figure S652. Get High-res Image Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.7e-23 (Chi-square test), Q value = 2.9e-20
Table S653. Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 44(19Q13.43) CNV | 2 | 9 | 49 | 0 | 0 |
| DEL PEAK 44(19Q13.43) WILD-TYPE | 288 | 31 | 90 | 17 | 6 |
Figure S653. Get High-res Image Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 4.19e-09 (Fisher's exact test), Q value = 3.1e-06
Table S654. Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 44(19Q13.43) CNV | 33 | 13 | 2 |
| DEL PEAK 44(19Q13.43) WILD-TYPE | 110 | 71 | 148 |
Figure S654. Get High-res Image Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.28e-09 (Fisher's exact test), Q value = 9.9e-07
Table S655. Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 44(19Q13.43) CNV | 29 | 1 | 2 |
| DEL PEAK 44(19Q13.43) WILD-TYPE | 113 | 106 | 111 |
Figure S655. Get High-res Image Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 2.47e-09 (Fisher's exact test), Q value = 1.9e-06
Table S656. Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 44(19Q13.43) CNV | 1 | 0 | 2 | 29 |
| DEL PEAK 44(19Q13.43) WILD-TYPE | 64 | 92 | 63 | 111 |
Figure S656. Get High-res Image Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.68e-11 (Fisher's exact test), Q value = 1.4e-08
Table S657. Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 44(19Q13.43) CNV | 48 | 5 | 3 |
| DEL PEAK 44(19Q13.43) WILD-TYPE | 159 | 139 | 129 |
Figure S657. Get High-res Image Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 2.15e-14 (Fisher's exact test), Q value = 2e-11
Table S658. Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 44(19Q13.43) CNV | 2 | 4 | 2 | 48 |
| DEL PEAK 44(19Q13.43) WILD-TYPE | 191 | 75 | 25 | 136 |
Figure S658. Get High-res Image Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 1.81e-05 (Fisher's exact test), Q value = 0.01
Table S659. Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 44(19Q13.43) CNV | 32 | 3 | 14 |
| DEL PEAK 44(19Q13.43) WILD-TYPE | 137 | 113 | 60 |
Figure S659. Get High-res Image Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 4.19e-06 (Fisher's exact test), Q value = 0.0025
Table S660. Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 44(19Q13.43) CNV | 3 | 41 | 5 |
| DEL PEAK 44(19Q13.43) WILD-TYPE | 114 | 156 | 40 |
Figure S660. Get High-res Image Gene #92: 'Del Peak 44(19q13.43)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.000182 (Chi-square test), Q value = 0.089
Table S661. Gene #93: 'Del Peak 45(20p12.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 45(20P12.1) CNV | 6 | 6 | 16 | 2 | 0 |
| DEL PEAK 45(20P12.1) WILD-TYPE | 284 | 34 | 123 | 15 | 6 |
Figure S661. Get High-res Image Gene #93: 'Del Peak 45(20p12.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 0.000218 (Fisher's exact test), Q value = 0.11
Table S662. Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 46(22Q11.1) CNV | 0 | 0 | 6 |
| DEL PEAK 46(22Q11.1) WILD-TYPE | 19 | 19 | 9 |
Figure S662. Get High-res Image Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 2.26e-29 (Chi-square test), Q value = 2.5e-26
Table S663. Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 46(22Q11.1) CNV | 3 | 15 | 61 | 1 | 1 |
| DEL PEAK 46(22Q11.1) WILD-TYPE | 287 | 25 | 78 | 16 | 5 |
Figure S663. Get High-res Image Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 9.87e-05 (Fisher's exact test), Q value = 0.05
Table S664. Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 46(22Q11.1) CNV | 39 | 18 | 13 |
| DEL PEAK 46(22Q11.1) WILD-TYPE | 104 | 66 | 137 |
Figure S664. Get High-res Image Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.25e-07 (Fisher's exact test), Q value = 8.5e-05
Table S665. Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 46(22Q11.1) CNV | 34 | 4 | 5 |
| DEL PEAK 46(22Q11.1) WILD-TYPE | 108 | 103 | 108 |
Figure S665. Get High-res Image Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.85e-09 (Fisher's exact test), Q value = 1.4e-06
Table S666. Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 46(22Q11.1) CNV | 1 | 2 | 4 | 36 |
| DEL PEAK 46(22Q11.1) WILD-TYPE | 64 | 90 | 61 | 104 |
Figure S666. Get High-res Image Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.79e-07 (Fisher's exact test), Q value = 0.00031
Table S667. Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 46(22Q11.1) CNV | 55 | 16 | 8 |
| DEL PEAK 46(22Q11.1) WILD-TYPE | 152 | 128 | 124 |
Figure S667. Get High-res Image Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 5.37e-05 (Fisher's exact test), Q value = 0.028
Table S668. Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 46(22Q11.1) CNV | 17 | 9 | 5 | 48 |
| DEL PEAK 46(22Q11.1) WILD-TYPE | 176 | 70 | 22 | 136 |
Figure S668. Get High-res Image Gene #94: 'Del Peak 46(22q11.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000218 (Fisher's exact test), Q value = 0.11
Table S669. Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 47(22Q12.1) CNV | 0 | 0 | 6 |
| DEL PEAK 47(22Q12.1) WILD-TYPE | 19 | 19 | 9 |
Figure S669. Get High-res Image Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 1.54e-31 (Chi-square test), Q value = 1.7e-28
Table S670. Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 47(22Q12.1) CNV | 4 | 13 | 67 | 1 | 2 |
| DEL PEAK 47(22Q12.1) WILD-TYPE | 286 | 27 | 72 | 16 | 4 |
Figure S670. Get High-res Image Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.84e-05 (Fisher's exact test), Q value = 0.011
Table S671. Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 47(22Q12.1) CNV | 41 | 21 | 13 |
| DEL PEAK 47(22Q12.1) WILD-TYPE | 102 | 63 | 137 |
Figure S671. Get High-res Image Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 4.79e-09 (Fisher's exact test), Q value = 3.6e-06
Table S672. Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 47(22Q12.1) CNV | 39 | 4 | 6 |
| DEL PEAK 47(22Q12.1) WILD-TYPE | 103 | 103 | 107 |
Figure S672. Get High-res Image Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.31e-11 (Fisher's exact test), Q value = 1.1e-08
Table S673. Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 47(22Q12.1) CNV | 2 | 2 | 3 | 42 |
| DEL PEAK 47(22Q12.1) WILD-TYPE | 63 | 90 | 62 | 98 |
Figure S673. Get High-res Image Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 1.24e-08 (Fisher's exact test), Q value = 9.1e-06
Table S674. Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 47(22Q12.1) CNV | 60 | 18 | 7 |
| DEL PEAK 47(22Q12.1) WILD-TYPE | 147 | 126 | 125 |
Figure S674. Get High-res Image Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.54e-07 (Fisher's exact test), Q value = 1e-04
Table S675. Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 47(22Q12.1) CNV | 16 | 8 | 6 | 55 |
| DEL PEAK 47(22Q12.1) WILD-TYPE | 177 | 71 | 21 | 129 |
Figure S675. Get High-res Image Gene #95: 'Del Peak 47(22q12.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 3.62e-06 (Fisher's exact test), Q value = 0.0022
Table S676. Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 14 | 17 | 12 | 10 |
| DEL PEAK 48(22Q13.31) CNV | 0 | 10 | 0 | 0 |
| DEL PEAK 48(22Q13.31) WILD-TYPE | 14 | 7 | 12 | 10 |
Figure S676. Get High-res Image Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.54e-07 (Fisher's exact test), Q value = 1e-04
Table S677. Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 48(22Q13.31) CNV | 0 | 0 | 10 |
| DEL PEAK 48(22Q13.31) WILD-TYPE | 19 | 19 | 5 |
Figure S677. Get High-res Image Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 9.61e-55 (Chi-square test), Q value = 1.1e-51
Table S678. Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 48(22Q13.31) CNV | 4 | 14 | 100 | 1 | 3 |
| DEL PEAK 48(22Q13.31) WILD-TYPE | 286 | 26 | 39 | 16 | 3 |
Figure S678. Get High-res Image Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.82e-13 (Fisher's exact test), Q value = 3.4e-10
Table S679. Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 48(22Q13.31) CNV | 67 | 24 | 13 |
| DEL PEAK 48(22Q13.31) WILD-TYPE | 76 | 60 | 137 |
Figure S679. Get High-res Image Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 8.88e-20 (Fisher's exact test), Q value = 9.3e-17
Table S680. Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 48(22Q13.31) CNV | 63 | 4 | 6 |
| DEL PEAK 48(22Q13.31) WILD-TYPE | 79 | 103 | 107 |
Figure S680. Get High-res Image Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.44e-23 (Fisher's exact test), Q value = 1.5e-20
Table S681. Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 48(22Q13.31) CNV | 1 | 2 | 4 | 66 |
| DEL PEAK 48(22Q13.31) WILD-TYPE | 64 | 90 | 61 | 74 |
Figure S681. Get High-res Image Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 4.73e-18 (Fisher's exact test), Q value = 4.8e-15
Table S682. Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 48(22Q13.31) CNV | 90 | 20 | 7 |
| DEL PEAK 48(22Q13.31) WILD-TYPE | 117 | 124 | 125 |
Figure S682. Get High-res Image Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 1.64e-18 (Fisher's exact test), Q value = 1.7e-15
Table S683. Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 48(22Q13.31) CNV | 16 | 9 | 6 | 86 |
| DEL PEAK 48(22Q13.31) WILD-TYPE | 177 | 70 | 21 | 98 |
Figure S683. Get High-res Image Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 4.47e-05 (Fisher's exact test), Q value = 0.024
Table S684. Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 48(22Q13.31) CNV | 63 | 16 | 21 |
| DEL PEAK 48(22Q13.31) WILD-TYPE | 106 | 100 | 53 |
Figure S684. Get High-res Image Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 5.9e-06 (Fisher's exact test), Q value = 0.0036
Table S685. Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 48(22Q13.31) CNV | 15 | 74 | 11 |
| DEL PEAK 48(22Q13.31) WILD-TYPE | 102 | 123 | 34 |
Figure S685. Get High-res Image Gene #96: 'Del Peak 48(22q13.31)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 2.35e-05 (Fisher's exact test), Q value = 0.013
Table S686. Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #1: 'MRNA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 14 | 17 | 12 | 10 |
| DEL PEAK 49(22Q13.32) CNV | 0 | 9 | 0 | 0 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 14 | 8 | 12 | 10 |
Figure S686. Get High-res Image Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #1: 'MRNA_CNMF'
P value = 1.13e-06 (Fisher's exact test), Q value = 0.00073
Table S687. Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 49(22Q13.32) CNV | 0 | 0 | 9 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 19 | 19 | 6 |
Figure S687. Get High-res Image Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 4.93e-53 (Chi-square test), Q value = 5.7e-50
Table S688. Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 49(22Q13.32) CNV | 8 | 14 | 102 | 1 | 3 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 282 | 26 | 37 | 16 | 3 |
Figure S688. Get High-res Image Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 1.57e-12 (Fisher's exact test), Q value = 1.4e-09
Table S689. Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 49(22Q13.32) CNV | 68 | 28 | 15 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 75 | 56 | 135 |
Figure S689. Get High-res Image Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 2.93e-18 (Fisher's exact test), Q value = 3e-15
Table S690. Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 49(22Q13.32) CNV | 64 | 5 | 8 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 78 | 102 | 105 |
Figure S690. Get High-res Image Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 1.21e-21 (Fisher's exact test), Q value = 1.3e-18
Table S691. Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 49(22Q13.32) CNV | 2 | 3 | 5 | 67 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 63 | 89 | 60 | 73 |
Figure S691. Get High-res Image Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 3.27e-17 (Fisher's exact test), Q value = 3.3e-14
Table S692. Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 49(22Q13.32) CNV | 93 | 22 | 9 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 114 | 122 | 123 |
Figure S692. Get High-res Image Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 7.13e-18 (Fisher's exact test), Q value = 7.2e-15
Table S693. Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 49(22Q13.32) CNV | 19 | 10 | 6 | 89 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 174 | 69 | 21 | 95 |
Figure S693. Get High-res Image Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 0.000218 (Fisher's exact test), Q value = 0.11
Table S694. Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 169 | 116 | 74 |
| DEL PEAK 49(22Q13.32) CNV | 65 | 19 | 23 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 104 | 97 | 51 |
Figure S694. Get High-res Image Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'
P value = 1.45e-05 (Fisher's exact test), Q value = 0.0084
Table S695. Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 49(22Q13.32) CNV | 18 | 78 | 11 |
| DEL PEAK 49(22Q13.32) WILD-TYPE | 99 | 119 | 34 |
Figure S695. Get High-res Image Gene #97: 'Del Peak 49(22q13.32)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 4.17e-05 (Fisher's exact test), Q value = 0.022
Table S696. Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 19 | 19 | 15 |
| DEL PEAK 50(XP21.1) CNV | 0 | 0 | 7 |
| DEL PEAK 50(XP21.1) WILD-TYPE | 19 | 19 | 8 |
Figure S696. Get High-res Image Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'
P value = 4.23e-33 (Chi-square test), Q value = 4.7e-30
Table S697. Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #3: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 290 | 40 | 139 | 17 | 6 |
| DEL PEAK 50(XP21.1) CNV | 2 | 10 | 67 | 2 | 0 |
| DEL PEAK 50(XP21.1) WILD-TYPE | 288 | 30 | 72 | 15 | 6 |
Figure S697. Get High-res Image Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #3: 'CN_CNMF'
P value = 3.02e-09 (Fisher's exact test), Q value = 2.3e-06
Table S698. Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 143 | 84 | 150 |
| DEL PEAK 50(XP21.1) CNV | 45 | 15 | 7 |
| DEL PEAK 50(XP21.1) WILD-TYPE | 98 | 69 | 143 |
Figure S698. Get High-res Image Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #4: 'METHLYATION_CNMF'
P value = 1.34e-10 (Fisher's exact test), Q value = 1.1e-07
Table S699. Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 142 | 107 | 113 |
| DEL PEAK 50(XP21.1) CNV | 38 | 2 | 5 |
| DEL PEAK 50(XP21.1) WILD-TYPE | 104 | 105 | 108 |
Figure S699. Get High-res Image Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #7: 'MRNASEQ_CNMF'
P value = 3.09e-11 (Fisher's exact test), Q value = 2.6e-08
Table S700. Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 65 | 92 | 65 | 140 |
| DEL PEAK 50(XP21.1) CNV | 2 | 1 | 3 | 39 |
| DEL PEAK 50(XP21.1) WILD-TYPE | 63 | 91 | 62 | 101 |
Figure S700. Get High-res Image Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'
P value = 7.15e-12 (Fisher's exact test), Q value = 6.2e-09
Table S701. Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 207 | 144 | 132 |
| DEL PEAK 50(XP21.1) CNV | 62 | 9 | 7 |
| DEL PEAK 50(XP21.1) WILD-TYPE | 145 | 135 | 125 |
Figure S701. Get High-res Image Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #9: 'MIRSEQ_CNMF'
P value = 4.61e-13 (Fisher's exact test), Q value = 4.1e-10
Table S702. Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 193 | 79 | 27 | 184 |
| DEL PEAK 50(XP21.1) CNV | 9 | 5 | 5 | 59 |
| DEL PEAK 50(XP21.1) WILD-TYPE | 184 | 74 | 22 | 125 |
Figure S702. Get High-res Image Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'
P value = 2.01e-05 (Fisher's exact test), Q value = 0.012
Table S703. Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 117 | 197 | 45 |
| DEL PEAK 50(XP21.1) CNV | 7 | 50 | 10 |
| DEL PEAK 50(XP21.1) WILD-TYPE | 110 | 147 | 35 |
Figure S703. Get High-res Image Gene #98: 'Del Peak 50(Xp21.1)' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'
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Copy number data file = All Lesions File (all_lesions.conf_##.txt, where ## is the confidence level). The all lesions file is from GISTIC pipeline and summarizes the results from the GISTIC run. It contains data about the significant regions of amplification and deletion as well as which samples are amplified or deleted in each of these regions. The identified regions are listed down the first column, and the samples are listed across the first row, starting in column 10.
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Molecular subtype file = UCEC-TP.transferedmergedcluster.txt
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Number of patients = 492
-
Number of copy number variation regions = 98
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Number of molecular subtypes = 12
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Exclude regions that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.