Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p34.2)	0 (0%)	105	7.7243e-07	0.000472	2.0811e-05	0.0125	0.89402	1	0.70601	1	0.063255	1	0.092721	1	0.2593	1	0.048059	1	0.2854	1	0.21187	1
Amp Peak  2(1p22.3)	0 (0%)	107	2.1967e-08	1.36e-05	0.26508	1	0.33037	1	0.58057	1	0.46445	1	0.70941	1	0.2503	1	0.077117	1	0.24801	1	0.10553	1
Amp Peak  3(1q21.3)	0 (0%)	74	1.2726e-08	7.86e-06	0.0012409	0.704	0.011755	1	0.051123	1	0.052383	1	0.17612	1	0.11222	1	0.11504	1	0.26869	1	0.024018	1
Amp Peak  4(1q23.3)	0 (0%)	68	7.955e-06	0.0048	0.024925	1	0.9254	1	0.58916	1	0.17656	1	0.61943	1	0.00049643	0.286	0.00476	1	0.0011436	0.65	0.00090849	0.519
Amp Peak  5(3p25.2)	0 (0%)	80	6.7615e-06	0.00408	0.0041332	1	0.27822	1	0.03928	1	0.00033309	0.194	0.031111	1	0.001554	0.873	0.003227	1	0.00091438	0.521	0.019382	1
Amp Peak  6(3q26.32)	0 (0%)	66	0.0049399	1	0.62532	1	0.16067	1	0.81172	1	0.055849	1	0.9531	1	0.49526	1	0.62004	1	0.63251	1	0.36052	1
Amp Peak  7(4p16.3)	0 (0%)	120	0.58491	1	0.11735	1	0.16214	1	0.18857	1	0.090298	1	0.13528	1	0.11682	1	0.3236	1	0.032104	1	0.55554	1
Amp Peak  8(4q13.3)	0 (0%)	127	0.0039722	1	0.10649	1	0.51704	1	0.86705	1	0.92156	1	0.6425	1	0.23023	1	0.1693	1	0.15791	1	0.59723	1
Amp Peak  9(5p15.1)	0 (0%)	80	2.3367e-06	0.00142	0.32035	1	0.013987	1	0.45966	1	0.026517	1	0.08859	1	0.17408	1	0.24393	1	0.056201	1	0.063301	1
Amp Peak 10(6p22.3)	0 (0%)	89	8.1991e-11	5.08e-08	0.0010303	0.586	0.83415	1	0.87182	1	0.22117	1	0.6289	1	0.057972	1	0.37688	1	0.17605	1	0.47974	1
Amp Peak 11(6q12)	0 (0%)	125	0.010202	1	0.86789	1	1	1	1	1	0.25454	1	0.6061	1	0.17183	1	0.002843	1	0.12842	1	0.25137	1
Amp Peak 12(6q21)	0 (0%)	132	0.036298	1	0.22281	1	0.62114	1	0.58438	1	0.054621	1	0.84865	1	0.8529	1	0.62026	1	1	1	0.6821	1
Amp Peak 13(7p11.2)	0 (0%)	70	6.9884e-08	4.3e-05	0.00088808	0.508	0.48139	1	0.24295	1	0.31943	1	0.88751	1	0.41385	1	0.47994	1	0.36546	1	0.3358	1
Amp Peak 14(8p11.23)	0 (0%)	101	0.00014369	0.0848	0.057868	1	0.073189	1	0.016951	1	0.81404	1	0.40866	1	0.21143	1	0.75109	1	0.21802	1	0.59368	1
Amp Peak 15(8p11.21)	0 (0%)	100	0.0022899	1	0.024717	1	0.59619	1	0.63731	1	0.27535	1	0.61813	1	0.085189	1	0.68298	1	0.14255	1	0.31192	1
Amp Peak 16(8q22.3)	0 (0%)	57	2.2545e-07	0.000139	0.0087896	1	0.16764	1	0.20779	1	0.32137	1	0.52286	1	0.012952	1	0.27882	1	0.03529	1	0.083763	1
Amp Peak 17(8q24.21)	0 (0%)	61	0.00012943	0.0765	0.061204	1	0.22617	1	0.35378	1	0.11516	1	0.67519	1	0.028149	1	0.59716	1	0.15866	1	0.24374	1
Amp Peak 18(10p15.1)	0 (0%)	89	2.9063e-09	1.8e-06	1.5597e-05	0.00937	0.89314	1	0.21526	1	0.87515	1	0.46741	1	0.24905	1	0.18084	1	0.13699	1	0.40652	1
Amp Peak 19(11q13.3)	0 (0%)	90	8.0452e-07	0.000491	0.095381	1	0.5536	1	0.5971	1	0.12262	1	0.92789	1	0.00043387	0.251	0.034984	1	0.061243	1	0.1482	1
Amp Peak 20(12q15)	0 (0%)	102	0.0066231	1	0.081237	1	0.76019	1	0.43903	1	0.060761	1	0.15748	1	0.23238	1	0.038784	1	0.044659	1	0.26809	1
Amp Peak 21(13q34)	0 (0%)	95	0.05882	1	0.83275	1	0.016406	1	0.031791	1	0.022092	1	0.50093	1	0.21241	1	0.6413	1	0.33122	1	0.55756	1
Amp Peak 22(16p12.1)	0 (0%)	111	0.0084249	1	0.15178	1	0.078326	1	0.4535	1	0.72764	1	0.26636	1	0.39607	1	0.37578	1	0.53902	1	0.54885	1
Amp Peak 23(17q11.2)	0 (0%)	82	3.5861e-06	0.00217	0.0006152	0.353	0.76019	1	0.43903	1	9.3123e-05	0.0554	0.010009	1	0.019618	1	0.01307	1	0.0072739	1	0.090425	1
Amp Peak 24(17q12)	0 (0%)	87	0.00020864	0.123	0.11751	1	0.9394	1	0.43903	1	0.041127	1	0.21069	1	0.026481	1	0.00021659	0.127	0.0017599	0.987	0.072312	1
Amp Peak 25(19q12)	0 (0%)	85	4.8241e-05	0.0288	0.0064472	1	0.37007	1	0.93577	1	0.64486	1	0.46294	1	0.37156	1	0.31848	1	0.42863	1	0.14604	1
Amp Peak 26(19q13.43)	0 (0%)	87	0.00010451	0.0621	0.052828	1	0.77788	1	0.76681	1	0.1401	1	0.46055	1	0.15169	1	0.094552	1	0.055882	1	0.072312	1
Amp Peak 27(20q11.21)	0 (0%)	46	2.0703e-06	0.00126	0.23983	1	0.34208	1	0.86458	1	0.57908	1	0.65875	1	0.31146	1	0.32024	1	0.05862	1	0.34586	1
Amp Peak 28(22q11.23)	0 (0%)	115	0.12623	1	0.48981	1	0.83664	1	0.091558	1	0.344	1	0.82247	1	0.21672	1	0.26539	1	0.16997	1	0.74137	1
Del Peak  1(1p36.11)	0 (0%)	123	0.22553	1	0.021245	1	0.069891	1	0.011411	1	0.68402	1	0.098979	1	0.7631	1	0.27576	1	0.57021	1	0.52388	1
Del Peak  2(1q32.1)	0 (0%)	122	0.068614	1	0.10763	1	0.73836	1	0.37988	1	0.97976	1	0.32942	1	0.96271	1	0.29538	1	0.76321	1	0.50981	1
Del Peak  3(2q22.1)	0 (0%)	107	0.17816	1	0.35966	1	0.3152	1	0.27846	1	0.12005	1	0.66951	1	0.22945	1	0.16044	1	0.12487	1	0.35683	1
Del Peak  4(2q34)	0 (0%)	90	0.0014929	0.841	0.12085	1	0.3093	1	0.47215	1	0.51111	1	0.46802	1	0.078512	1	0.27848	1	0.56334	1	0.4172	1
Del Peak  5(2q37.1)	0 (0%)	77	0.00052583	0.302	0.013047	1	0.90782	1	0.87528	1	0.16453	1	0.17196	1	0.043438	1	0.10921	1	0.3939	1	0.20634	1
Del Peak  6(3p21.31)	0 (0%)	103	0.17914	1	0.19102	1	0.0064897	1	0.0023042	1	0.00011464	0.068	0.010826	1	0.1051	1	0.20444	1	0.071261	1	0.19314	1
Del Peak  7(3p14.2)	0 (0%)	102	0.086089	1	0.7025	1	0.075854	1	0.00029355	0.171	0.00048948	0.283	0.0067097	1	0.32612	1	0.29787	1	0.53422	1	0.25045	1
Del Peak  8(3p12.3)	0 (0%)	109	0.010674	1	0.59031	1	0.018856	1	0.00049489	0.286	0.0013189	0.746	0.087662	1	0.41815	1	0.6328	1	0.40822	1	0.62197	1
Del Peak  9(4q22.1)	0 (0%)	91	0.12124	1	0.6821	1	0.3577	1	1	1	0.40794	1	0.088382	1	0.88576	1	0.50781	1	0.3979	1	0.54983	1
Del Peak 10(4q34.2)	0 (0%)	85	7.7903e-05	0.0464	0.24305	1	0.42198	1	0.87528	1	0.38707	1	0.45161	1	0.12142	1	0.013475	1	0.11725	1	0.15044	1
Del Peak 11(5q11.2)	0 (0%)	75	3.2427e-07	0.000199	0.026671	1	0.8138	1	0.47385	1	0.27094	1	0.66765	1	0.16657	1	0.15131	1	0.38394	1	0.013199	1
Del Peak 12(5q35.1)	0 (0%)	78	0.00035474	0.206	0.0095506	1	0.56722	1	0.56809	1	0.50117	1	0.28223	1	0.056265	1	0.14069	1	0.56441	1	0.035322	1
Del Peak 13(6p25.3)	0 (0%)	111	0.12158	1	0.30917	1	0.13456	1	0.66031	1	0.2318	1	0.42626	1	0.65787	1	0.92741	1	0.35962	1	0.8995	1
Del Peak 14(6q21)	0 (0%)	87	0.0003666	0.213	0.0058016	1	0.079914	1	0.27212	1	0.56948	1	0.060299	1	0.34393	1	0.68625	1	0.26658	1	0.16152	1
Del Peak 15(8p23.1)	0 (0%)	67	8.84e-06	0.00532	0.00040136	0.233	0.16947	1	0.44639	1	0.43753	1	0.84574	1	0.01231	1	0.0083475	1	0.025738	1	0.014003	1
Del Peak 16(9p23)	0 (0%)	84	0.00050089	0.288	0.75921	1	0.27398	1	0.71654	1	0.72992	1	0.16233	1	0.45017	1	0.95404	1	0.93005	1	0.89685	1
Del Peak 17(9p21.3)	0 (0%)	63	4.5179e-07	0.000276	0.56171	1	0.071796	1	0.93048	1	0.37859	1	0.098258	1	0.6371	1	0.59088	1	0.92916	1	0.44642	1
Del Peak 18(10p12.1)	0 (0%)	121	0.10139	1	0.82965	1	0.45485	1	0.90556	1	0.17972	1	0.11941	1	0.28272	1	0.20002	1	0.16819	1	0.4165	1
Del Peak 19(10q23.31)	0 (0%)	90	0.00011538	0.0683	0.0051664	1	0.2284	1	0.92873	1	0.56227	1	0.1948	1	0.32218	1	0.40927	1	0.19285	1	0.091201	1
Del Peak 20(11p15.5)	0 (0%)	77	7.6908e-05	0.0459	0.021171	1	0.19518	1	0.6729	1	0.059583	1	0.01777	1	0.0047183	1	0.04111	1	0.0044598	1	0.092349	1
Del Peak 21(11q25)	0 (0%)	103	0.0097346	1	0.35	1	0.37822	1	1	1	0.0052769	1	0.21301	1	0.070367	1	0.05985	1	0.080324	1	0.17529	1
Del Peak 22(13q14.2)	0 (0%)	92	0.00025413	0.149	1	1	0.00022903	0.134	0.0087455	1	0.0051934	1	0.1099	1	0.84416	1	0.059931	1	0.81896	1	0.91782	1
Del Peak 23(14q12)	0 (0%)	107	0.0013338	0.754	0.0014341	0.809	0.8053	1	0.59817	1	0.19409	1	0.26146	1	0.088437	1	0.52689	1	0.11381	1	0.029016	1
Del Peak 24(14q32.31)	0 (0%)	109	0.1281	1	0.034958	1	0.8053	1	0.84344	1	0.40742	1	0.86212	1	0.00024967	0.146	0.084275	1	0.0093342	1	0.013339	1
Del Peak 25(15q13.1)	0 (0%)	95	4.3225e-06	0.00262	0.0084305	1	0.082907	1	0.45966	1	0.072302	1	0.13664	1	0.094157	1	0.1165	1	0.26209	1	0.033833	1
Del Peak 26(16p13.3)	0 (0%)	96	3.498e-06	0.00212	0.0084324	1	0.19141	1	0.22993	1	0.66466	1	0.97454	1	0.49652	1	0.64157	1	0.58126	1	0.89	1
Del Peak 27(16q23.1)	0 (0%)	112	1.759e-05	0.0106	0.027148	1	0.23182	1	0.7533	1	0.11801	1	0.35819	1	0.049244	1	0.21519	1	0.037668	1	0.029654	1
Del Peak 28(17p12)	0 (0%)	73	0.0021688	1	0.02639	1	0.55568	1	0.40504	1	0.039389	1	0.3774	1	0.19242	1	0.77706	1	0.52648	1	0.85052	1
Del Peak 29(18q23)	0 (0%)	87	0.061574	1	0.59387	1	0.97864	1	0.76299	1	0.90304	1	0.28088	1	0.030834	1	0.019671	1	0.13356	1	0.096474	1
Del Peak 30(19p13.3)	0 (0%)	91	0.0027365	1	0.051795	1	1	1	0.75741	1	0.59754	1	0.81992	1	0.3451	1	0.11083	1	0.79955	1	0.51964	1
Del Peak 31(22q13.32)	0 (0%)	90	2.9678e-07	0.000182	0.30514	1	0.12831	1	0.067522	1	0.028316	1	0.14954	1	0.57588	1	0.11452	1	1	1	0.46496	1
Del Peak 32(Xp11.3)	0 (0%)	110	0.14956	1	0.0076075	1	0.77519	1	0.92232	1	0.6276	1	0.23596	1	0.55359	1	0.33612	1	0.69595	1	0.90144	1
Del Peak 33(Xq21.33)	0 (0%)	115	0.2108	1	0.071955	1	0.17296	1	0.17311	1	0.02424	1	0.086849	1	0.15334	1	0.31495	1	0.65158	1	0.15774	1
Del Peak 34(Xq23)	0 (0%)	117	0.29705	1	0.018388	1	0.17296	1	0.17311	1	0.010873	1	0.077485	1	0.16545	1	0.092391	1	0.81352	1	0.12485	1