Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	92	0.41483	1	0.58441	1	0.27439	1	0.90393	1	0.98232	1	0.82758	1	0.41835	1	0.76609	1
1q gain	0 (0%)	78	0.020812	1	0.37369	1	0.34514	1	0.56753	1	0.25209	1	0.076438	1	0.40705	1	0.25744	1
2p gain	0 (0%)	109	0.083321	1	0.34661	1	0.10044	1	0.095149	1	0.27115	1	0.04409	1	0.18092	1	0.03694	1
2q gain	0 (0%)	121	0.084258	1	0.61311	1	0.069385	1	0.15266	1	1	1	0.63717	1	1	1	0.73181	1
3p gain	0 (0%)	105	0.56809	1	0.40695	1	0.71731	1	0.036738	1	0.4831	1	1	1	1	1	0.333	1
3q gain	0 (0%)	64	1.3039e-05	0.0076	0.46307	1	0.019099	1	0.047802	1	0.053716	1	0.17675	1	0.48966	1	0.013299	1
4q gain	0 (0%)	123	0.11451	1	0.11602	1	0.45349	1	0.48498	1	0.48677	1	0.21598	1	0.26705	1	0.18265	1
5p gain	0 (0%)	85	0.020411	1	0.91375	1	0.93487	1	0.72792	1	0.88101	1	0.30436	1	0.24097	1	0.28897	1
5q gain	0 (0%)	113	0.57215	1	0.42185	1	1	1	1	1	0.75884	1	0.52997	1	0.57367	1	0.86975	1
6p gain	0 (0%)	108	0.10815	1	0.0099097	1	0.026151	1	0.09872	1	0.18763	1	0.172	1	0.044499	1	0.096844	1
6q gain	0 (0%)	117	0.50097	1	0.0048261	1	0.053618	1	0.0060124	1	0.095305	1	0.021603	1	0.24892	1	0.055434	1
7p gain	0 (0%)	119	0.48042	1	0.17128	1	0.19845	1	0.41011	1	0.31563	1	0.10097	1	0.0049483	1	0.0028017	1
7q gain	0 (0%)	115	0.10891	1	0.2661	1	0.28492	1	1	1	0.48187	1	1	1	0.10652	1	0.10966	1
8p gain	0 (0%)	116	0.64386	1	0.41006	1	0.11966	1	0.16718	1	0.38005	1	1	1	0.26561	1	0.59418	1
8q gain	0 (0%)	104	0.034911	1	0.015491	1	0.10374	1	0.38262	1	0.10448	1	0.21035	1	0.053842	1	0.012368	1
9p gain	0 (0%)	114	0.32035	1	0.74958	1	0.47013	1	0.014762	1	0.41179	1	0.50876	1	0.68944	1	0.40705	1
9q gain	0 (0%)	115	0.66888	1	0.22292	1	0.43442	1	0.036138	1	0.1283	1	1	1	0.62126	1	0.66985	1
10p gain	0 (0%)	118	0.65341	1	0.90096	1	0.88327	1	0.725	1	0.15559	1	1	1	0.80927	1	1	1
10q gain	0 (0%)	122	0.45652	1	0.68017	1	0.80978	1	0.14527	1	0.32998	1	0.58338	1	0.56387	1	0.29774	1
12p gain	0 (0%)	112	0.010278	1	0.48596	1	0.38518	1	0.003215	1	0.37755	1	0.35421	1	0.93638	1	0.93761	1
12q gain	0 (0%)	116	0.021347	1	0.84234	1	0.63694	1	0.051459	1	0.24383	1	1	1	0.59175	1	0.41407	1
13q gain	0 (0%)	120	0.039702	1	0.49579	1	0.16768	1	0.488	1	0.88046	1	0.36489	1	0.20787	1	0.43626	1
14q gain	0 (0%)	116	0.30504	1	0.59343	1	0.20122	1	0.12408	1	0.40182	1	0.48748	1	0.11391	1	0.027771	1
15q gain	0 (0%)	113	0.0018421	1	1	1	0.31338	1	0.79425	1	0.84391	1	1	1	0.66116	1	1	1
16p gain	0 (0%)	112	0.045563	1	0.18726	1	0.5061	1	0.061451	1	0.53252	1	0.12068	1	0.63096	1	0.31791	1
16q gain	0 (0%)	116	0.91999	1	0.64347	1	0.36371	1	0.012239	1	0.40182	1	0.48748	1	0.45134	1	0.19554	1
17p gain	0 (0%)	121	0.61568	1	0.26616	1	0.26939	1	0.012639	1	0.42282	1	0.028653	1	0.27245	1	0.13946	1
17q gain	0 (0%)	113	0.015669	1	0.018197	1	0.025318	1	0.014803	1	0.39439	1	0.020812	1	0.040991	1	0.063833	1
18p gain	0 (0%)	114	0.4077	1	0.44026	1	0.60585	1	0.02714	1	0.23973	1	0.3451	1	0.18546	1	0.29531	1
18q gain	0 (0%)	119	0.075675	1	0.79459	1	0.48553	1	0.0083231	1	0.39129	1	1	1	0.48174	1	0.88953	1
19p gain	0 (0%)	118	0.53027	1	0.80763	1	0.54679	1	0.33064	1	0.55846	1	1	1	0.72393	1	0.8985	1
19q gain	0 (0%)	103	0.21842	1	0.80383	1	0.40858	1	0.030908	1	0.12632	1	0.13751	1	0.0073869	1	0.046597	1
20p gain	0 (0%)	94	0.00068852	0.397	0.40125	1	0.85589	1	0.082957	1	0.94629	1	0.18046	1	0.57407	1	0.38982	1
20q gain	0 (0%)	88	0.00053386	0.309	0.21913	1	0.51214	1	0.16696	1	0.63184	1	0.14462	1	0.64494	1	0.14329	1
21q gain	0 (0%)	112	0.55557	1	0.72064	1	0.2655	1	0.9045	1	0.33167	1	0.75823	1	0.22855	1	0.086781	1
22q gain	0 (0%)	118	0.040304	1	0.90096	1	0.32574	1	0.0037652	1	0.313	1	1	1	0.59183	1	0.46677	1
Xq gain	0 (0%)	120	0.43502	1	0.20071	1	0.76251	1	0.33197	1	0.30533	1	0.36489	1	0.32231	1	0.16382	1
1q loss	0 (0%)	123	0.26164	1	0.61683	1	1	1	0.48498	1	0.8387	1	1	1	0.78194	1	0.47449	1
2p loss	0 (0%)	123	0.11451	1	0.18391	1	0.25061	1	0.67281	1	0.73606	1	0.55311	1	1	1	0.78441	1
2q loss	0 (0%)	121	0.084258	1	0.030264	1	0.085916	1	0.26668	1	0.72289	1	1	1	0.38064	1	0.36747	1
3p loss	0 (0%)	99	0.31977	1	0.0012497	0.716	0.19767	1	0.00043636	0.254	0.028381	1	0.0037997	1	0.00076157	0.439	0.00044253	0.257
4p loss	0 (0%)	85	0.0018581	1	0.11094	1	0.27851	1	0.95615	1	0.35085	1	0.21454	1	0.22621	1	0.10173	1
4q loss	0 (0%)	102	6.3952e-06	0.00373	1	1	0.097593	1	0.29677	1	0.62749	1	1	1	0.95885	1	0.77491	1
5p loss	0 (0%)	123	0.34629	1	0.61683	1	0.79037	1	1	1	0.35571	1	1	1	1	1	0.34914	1
5q loss	0 (0%)	106	0.031649	1	0.16672	1	0.52697	1	0.034512	1	0.078829	1	0.0068615	1	0.14945	1	0.20181	1
6p loss	0 (0%)	114	0.92589	1	0.054607	1	0.38445	1	0.43213	1	0.72514	1	1	1	0.55129	1	0.7503	1
6q loss	0 (0%)	103	0.20811	1	0.54079	1	0.28714	1	0.77742	1	0.39451	1	1	1	0.56405	1	1	1
7p loss	0 (0%)	120	0.062536	1	0.49579	1	0.55849	1	0.33197	1	0.77912	1	0.36489	1	0.6608	1	0.49964	1
7q loss	0 (0%)	113	0.012929	1	0.42185	1	0.035213	1	0.18813	1	0.10555	1	0.75299	1	0.22122	1	0.074971	1
8p loss	0 (0%)	99	0.43487	1	0.23005	1	0.4453	1	0.79514	1	0.80348	1	1	1	0.73445	1	0.96127	1
8q loss	0 (0%)	120	1	1	0.49579	1	0.3259	1	0.33197	1	0.35851	1	0.0669	1	0.1481	1	0.43626	1
9p loss	0 (0%)	114	0.32035	1	0.92625	1	0.74002	1	0.77555	1	0.97031	1	1	1	0.86427	1	0.7503	1
9q loss	0 (0%)	115	0.66888	1	0.11743	1	0.014491	1	0.27457	1	0.36569	1	0.086442	1	0.29119	1	0.09207	1
10p loss	0 (0%)	104	0.015242	1	0.83453	1	0.13882	1	0.1025	1	0.76472	1	0.60954	1	0.79837	1	1	1
10q loss	0 (0%)	102	0.012907	1	0.9579	1	0.79013	1	0.1808	1	0.47661	1	0.45947	1	0.46572	1	0.57589	1
11p loss	0 (0%)	99	0.08225	1	0.45384	1	0.87441	1	0.94092	1	0.782	1	0.64443	1	0.73445	1	0.42102	1
11q loss	0 (0%)	96	0.0096482	1	0.46296	1	0.77141	1	0.17719	1	0.95192	1	0.37279	1	0.8357	1	0.9645	1
12p loss	0 (0%)	107	0.0021794	1	0.16939	1	0.73874	1	0.72048	1	0.5889	1	0.17969	1	0.51752	1	0.24557	1
12q loss	0 (0%)	122	0.035589	1	0.45907	1	0.28599	1	0.2981	1	1	1	1	1	0.37959	1	0.67748	1
13q loss	0 (0%)	103	0.42999	1	0.022593	1	0.48922	1	0.065926	1	0.030058	1	0.2085	1	0.10091	1	0.048827	1
14q loss	0 (0%)	119	0.42417	1	0.14604	1	0.023362	1	0.0035534	1	0.19964	1	0.025784	1	0.056285	1	0.010307	1
15q loss	0 (0%)	118	0.0015747	0.901	1	1	0.31611	1	0.11609	1	0.7722	1	0.69665	1	1	1	1	1
16p loss	0 (0%)	118	0.41463	1	0.14763	1	0.12934	1	0.0063841	1	0.11741	1	0.24143	1	0.21148	1	0.33039	1
16q loss	0 (0%)	112	0.82052	1	0.031445	1	0.0010697	0.614	0.00052322	0.303	0.057399	1	0.0055376	1	0.029759	1	0.024447	1
17p loss	0 (0%)	99	0.014774	1	0.0029224	1	0.04114	1	0.059647	1	0.020215	1	0.017288	1	0.024148	1	0.09134	1
17q loss	0 (0%)	121	0.61568	1	0.030264	1	0.085916	1	0.26668	1	0.29605	1	0.32129	1	0.32629	1	0.36747	1
18p loss	0 (0%)	110	0.55016	1	0.26646	1	0.038908	1	0.098811	1	0.10032	1	0.081796	1	0.0061681	1	0.060903	1
18q loss	0 (0%)	102	0.11208	1	0.011402	1	0.00042831	0.249	0.003342	1	0.013154	1	0.0066096	1	0.0036697	1	0.0028892	1
19p loss	0 (0%)	114	0.43984	1	0.69273	1	0.25835	1	0.39658	1	0.19033	1	0.50876	1	0.63827	1	0.34852	1
19q loss	0 (0%)	120	0.49514	1	0.57016	1	0.48553	1	0.17255	1	0.77912	1	0.36489	1	1	1	1	1
20p loss	0 (0%)	118	0.53027	1	0.42041	1	0.59555	1	0.37569	1	0.95508	1	0.69665	1	0.72393	1	0.41272	1
21q loss	0 (0%)	113	0.00097604	0.561	0.45799	1	0.85783	1	0.80978	1	0.32789	1	0.75299	1	0.70803	1	1	1
22q loss	0 (0%)	113	0.86958	1	1	1	0.86723	1	0.51224	1	0.75884	1	1	1	0.75583	1	0.86975	1