Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q21.3)	0 (0%)	59	0.010299	1	0.078117	1	0.3859	1	0.63478	1	0.42755	1	0.33254	1	0.7675	1	0.08882	1
Amp Peak  2(1q44)	0 (0%)	58	0.0090513	1	0.74629	1	0.57298	1	1	1	0.91376	1	0.43629	1	0.14628	1	0.49864	1
Amp Peak  3(2p24.3)	0 (0%)	93	0.14732	1	0.32143	1	0.060541	1	0.068937	1	0.48424	1	0.081946	1	0.095481	1	0.0032535	1
Amp Peak  4(2q32.3)	0 (0%)	106	0.00023823	0.097	0.091883	1	0.00064472	0.261	0.0061458	1	0.49326	1	1	1	0.10335	1	0.0049481	1
Amp Peak  5(3q26.2)	0 (0%)	31	1.2588e-06	0.000522	0.70237	1	0.093139	1	0.33229	1	0.015209	1	0.26329	1	0.29746	1	0.011434	1
Amp Peak  6(3q28)	0 (0%)	32	6.3662e-07	0.000265	0.70679	1	0.049248	1	0.36347	1	0.010758	1	0.37266	1	0.16907	1	0.007058	1
Amp Peak  7(4q12)	0 (0%)	114	0.50694	1	0.18296	1	0.08257	1	0.0043607	1	0.49491	1	0.042816	1	0.3164	1	0.43895	1
Amp Peak  8(6p21.33)	0 (0%)	91	0.0049459	1	0.017713	1	0.0028566	1	0.055283	1	0.32571	1	0.3861	1	0.12623	1	0.11738	1
Amp Peak  9(6q12)	0 (0%)	102	0.34239	1	0.20252	1	0.14331	1	0.0085782	1	0.4848	1	0.21692	1	0.29974	1	0.31289	1
Amp Peak 10(8q24.21)	0 (0%)	73	0.0020677	0.815	0.62919	1	0.64722	1	0.5345	1	0.55427	1	0.69903	1	0.060693	1	0.4918	1
Amp Peak 11(8q24.21)	0 (0%)	78	0.0043206	1	0.27237	1	0.70467	1	0.38597	1	0.31351	1	0.68979	1	0.1037	1	0.65713	1
Amp Peak 12(9p24.1)	0 (0%)	98	0.058746	1	0.5433	1	0.80572	1	0.52752	1	0.4789	1	0.35113	1	0.1911	1	0.41201	1
Amp Peak 13(11q13.3)	0 (0%)	108	0.038427	1	0.72757	1	0.017077	1	0.029055	1	0.65793	1	0.78454	1	0.2208	1	0.85131	1
Amp Peak 14(11q22.1)	0 (0%)	99	7.3834e-05	0.0303	0.058428	1	0.078156	1	0.22307	1	0.071349	1	0.059716	1	0.041895	1	0.17346	1
Amp Peak 15(13q22.1)	0 (0%)	99	0.0053383	1	0.41967	1	0.20498	1	0.22416	1	0.15676	1	0.81333	1	0.46071	1	0.14267	1
Amp Peak 16(14q24.1)	0 (0%)	101	0.68921	1	0.7202	1	0.28249	1	0.11306	1	0.75159	1	1	1	0.92115	1	0.49553	1
Amp Peak 17(15q26.3)	0 (0%)	96	0.0058351	1	0.74689	1	0.31633	1	0.53936	1	0.31196	1	0.82007	1	0.8357	1	0.39997	1
Amp Peak 18(16p13.2)	0 (0%)	99	0.075677	1	0.43665	1	0.87008	1	0.73882	1	0.8812	1	0.81333	1	0.82327	1	0.57905	1
Amp Peak 19(16p13.13)	0 (0%)	96	0.061791	1	0.26656	1	0.6472	1	0.23496	1	0.91795	1	0.25389	1	0.74928	1	0.2666	1
Amp Peak 20(17q12)	0 (0%)	105	0.063094	1	0.012012	1	0.012578	1	0.095149	1	0.36733	1	0.020181	1	0.080252	1	0.010598	1
Amp Peak 21(17q25.1)	0 (0%)	92	0.011254	1	0.011458	1	0.041117	1	0.429	1	0.63097	1	0.27563	1	0.097139	1	0.2971	1
Amp Peak 22(19q13.31)	0 (0%)	83	0.012391	1	0.57043	1	0.28739	1	0.15429	1	0.80649	1	0.6867	1	0.52335	1	0.7896	1
Amp Peak 23(20q11.21)	0 (0%)	65	0.0009981	0.401	0.2646	1	0.2829	1	0.25567	1	0.41983	1	0.56494	1	0.72972	1	0.34489	1
Amp Peak 24(Xq28)	0 (0%)	90	0.79479	1	0.11993	1	0.67264	1	0.90893	1	0.033075	1	0.52132	1	0.0023958	0.932	0.040034	1
Del Peak  1(1p36.23)	0 (0%)	106	0.082886	1	0.0093756	1	0.0012472	0.495	0.0012989	0.514	0.11527	1	0.014944	1	0.0023049	0.904	0.0023561	0.919
Del Peak  2(1p13.1)	0 (0%)	114	0.74963	1	0.69273	1	1	1	1	1	0.39535	1	0.3451	1	0.21743	1	0.86487	1
Del Peak  3(2q22.1)	0 (0%)	104	0.05246	1	0.63415	1	0.90643	1	0.8212	1	0.39029	1	0.80458	1	0.35039	1	0.66558	1
Del Peak  4(2q37.1)	0 (0%)	75	0.004309	1	0.023007	1	0.20053	1	0.33312	1	0.15581	1	0.0052324	1	0.19661	1	0.035329	1
Del Peak  5(3p11.1)	0 (0%)	75	0.00066847	0.27	0.041309	1	0.39013	1	0.0023225	0.908	0.036022	1	0.017034	1	0.15333	1	0.043252	1
Del Peak  6(4q22.1)	0 (0%)	87	1.4978e-06	0.00062	0.16895	1	0.072253	1	0.53389	1	0.7322	1	0.53244	1	0.46344	1	0.59014	1
Del Peak  7(4q35.2)	0 (0%)	79	1.3808e-05	0.0057	0.087599	1	0.049923	1	0.16024	1	0.65585	1	0.42725	1	0.2171	1	0.52098	1
Del Peak  8(5q14.3)	0 (0%)	90	0.02446	1	0.26546	1	0.63097	1	0.14402	1	0.16701	1	0.13252	1	0.65931	1	0.15547	1
Del Peak  9(6p24.3)	0 (0%)	108	0.61898	1	0.16541	1	0.25841	1	0.15863	1	0.76756	1	1	1	0.50094	1	0.58612	1
Del Peak 10(6p12.1)	0 (0%)	106	0.67376	1	0.43541	1	0.46642	1	0.12304	1	0.52371	1	0.79125	1	0.74864	1	0.16378	1
Del Peak 11(6q26)	0 (0%)	78	0.13351	1	0.58776	1	0.36286	1	0.67594	1	0.94237	1	1	1	1	1	0.86956	1
Del Peak 12(7q34)	0 (0%)	98	0.0052657	1	0.63226	1	0.12004	1	0.66785	1	0.20407	1	0.64186	1	0.41559	1	0.5036	1
Del Peak 13(10q23.31)	0 (0%)	87	0.022125	1	0.59035	1	0.27249	1	0.019662	1	0.941	1	1	1	0.88498	1	0.88404	1
Del Peak 14(10q26.3)	0 (0%)	88	0.00013319	0.0545	0.72963	1	0.42107	1	0.39785	1	0.85102	1	1	1	0.58749	1	0.91009	1
Del Peak 15(11p15.1)	0 (0%)	86	0.30056	1	0.090108	1	0.16168	1	0.066465	1	0.42975	1	0.21924	1	0.42638	1	0.63288	1
Del Peak 16(11q25)	0 (0%)	52	0.002231	0.877	0.11676	1	0.12726	1	0.10576	1	0.2118	1	0.23761	1	0.019181	1	0.26752	1
Del Peak 17(13q13.3)	0 (0%)	74	0.14388	1	0.17588	1	0.39763	1	0.8072	1	0.11828	1	0.077519	1	0.018624	1	0.38172	1
Del Peak 18(14q32.31)	0 (0%)	101	0.077353	1	0.011646	1	0.0011751	0.469	0.0012213	0.486	0.012361	1	0.14243	1	0.0027093	1	0.020182	1
Del Peak 19(15q15.1)	0 (0%)	97	2.6783e-05	0.011	0.37772	1	0.30326	1	0.29167	1	0.095865	1	1	1	0.049422	1	0.22426	1
Del Peak 20(16q11.2)	0 (0%)	101	0.74968	1	0.044524	1	0.010279	1	0.0081198	1	0.06543	1	0.003018	1	0.015823	1	0.021164	1
Del Peak 21(16q23.1)	0 (0%)	98	1	1	0.027781	1	0.0002345	0.0957	3.4544e-05	0.0142	0.012198	1	0.00084947	0.342	0.0010177	0.408	0.0019364	0.765
Del Peak 22(17p12)	0 (0%)	84	0.011057	1	0.1051	1	0.23336	1	0.75548	1	0.070189	1	0.15313	1	0.20556	1	0.74257	1
Del Peak 23(17q25.3)	0 (0%)	104	0.045076	1	0.00053655	0.218	0.035891	1	0.034512	1	0.01089	1	0.020371	1	0.010381	1	0.082381	1
Del Peak 24(19p13.3)	0 (0%)	87	0.0030231	1	0.94029	1	0.0029499	1	0.069879	1	0.2347	1	0.20924	1	0.088008	1	0.097801	1
Del Peak 25(20p12.1)	0 (0%)	109	0.84591	1	0.40534	1	0.7457	1	1	1	0.55229	1	1	1	0.21525	1	0.67395	1
Del Peak 26(21q21.1)	0 (0%)	99	0.061792	1	0.33366	1	0.56909	1	0.38658	1	0.96771	1	1	1	0.67821	1	0.79008	1
Del Peak 27(Xp11.3)	0 (0%)	89	0.0044095	1	0.0027735	1	0.21082	1	0.19198	1	0.0011131	0.445	0.20627	1	0.080527	1	0.02024	1
Del Peak 28(Xq21.33)	0 (0%)	99	0.011901	1	0.0029224	1	0.16396	1	0.090148	1	0.021994	1	0.16171	1	0.28451	1	0.098934	1