Clinical Features Time to Death AGE PRIMARY.SITE.OF.DISEASE GENDER HISTOLOGICAL.TYPE RADIATIONS.RADIATION.REGIMENINDICATION DISTANT.METASTASIS LYMPH.NODE.METASTASIS COMPLETENESS.OF.RESECTION NUMBER.OF.LYMPH.NODES TUMOR.STAGECODE NEOPLASM.DISEASESTAGE nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q t-test_P t-test_Q Chi-square test_P Chi-square test_Q Amp Peak 1(1q31.1) 0 (0%) 441 0.45403 1 0.29179 1 0.026825 1 0.19835 1 0.092718 1 0.035693 1 0.17133 1 0.019498 1 0.63235 1 0.014106 1 NA NA 0.32745 1 Amp Peak 2(2q33.1) 0 (0%) 452 0.12853 1 0.38546 1 0.030984 1 1 1 0.0037173 1 0.10346 1 0.53522 1 0.00023765 0.188 0.39686 1 0.02568 1 NA NA 0.025453 1 Amp Peak 3(5p12) 0 (0%) 468 0.014994 1 0.37245 1 0.15139 1 0.82992 1 0.055961 1 0.37909 1 0.34923 1 0.11302 1 0.036983 1 0.066489 1 NA NA 0.16374 1 Amp Peak 4(5q22.3) 0 (0%) 516 0.75749 1 0.86517 1 0.44472 1 0.89079 1 0.31503 1 1 1 0.031432 1 0.23009 1 0.076838 1 0.47625 1 NA NA 0.50468 1 Amp Peak 5(6p21.1) 0 (0%) 429 0.47561 1 0.68242 1 0.031387 1 0.15099 1 0.002336 1 0.0013572 1 0.10599 1 0.00078807 0.608 0.17619 1 0.0025043 1 NA NA 0.019744 1 Amp Peak 6(7p21.3) 0 (0%) 238 0.29418 1 0.10336 1 0.029239 1 0.67125 1 0.00022491 0.179 0.08822 1 0.025916 1 0.00056873 0.445 0.14835 1 0.031429 1 NA NA 0.00039157 0.308 Amp Peak 7(8p11.23) 0 (0%) 379 0.45849 1 0.75158 1 0.62466 1 0.42803 1 0.23788 1 0.49849 1 0.42573 1 0.45615 1 0.16917 1 0.63377 1 NA NA 0.17201 1 Amp Peak 8(8p11.21) 0 (0%) 337 0.65336 1 0.59699 1 0.63634 1 0.17524 1 0.12219 1 0.74225 1 0.31585 1 0.30066 1 0.047026 1 0.42859 1 NA NA 0.12552 1 Amp Peak 9(8q12.1) 0 (0%) 266 0.91973 1 0.19033 1 0.3028 1 0.55718 1 0.0095045 1 0.042302 1 0.026995 1 0.17056 1 0.10673 1 0.028193 1 NA NA 0.054579 1 Amp Peak 10(8q24.21) 0 (0%) 230 0.5312 1 0.23572 1 0.086269 1 0.34883 1 0.011175 1 0.093131 1 0.057063 1 0.56891 1 0.21547 1 0.065604 1 NA NA 0.14365 1 Amp Peak 11(10q22.3) 0 (0%) 540 0.81936 1 0.3027 1 1 1 0.48762 1 0.93138 1 0.43408 1 0.91142 1 2.7709e-05 0.0222 0.91915 1 0.087048 1 NA NA 0.46398 1 Amp Peak 12(11p15.5) 0 (0%) 446 0.71103 1 0.060779 1 0.1452 1 0.54781 1 0.0014498 1 0.11951 1 0.38326 1 0.80873 1 0.87796 1 0.42854 1 NA NA 0.99 1 Amp Peak 13(12p13.32) 0 (0%) 431 0.25733 1 0.069629 1 0.82906 1 0.50061 1 0.33577 1 0.69773 1 0.084692 1 0.44609 1 0.74425 1 0.44708 1 NA NA 0.15829 1 Amp Peak 14(13q12.13) 0 (0%) 204 0.12153 1 0.31391 1 0.0024574 1 0.66277 1 1.2052e-09 9.85e-07 1 1 0.010422 1 0.0011396 0.868 0.054477 1 0.030981 1 NA NA 0.00058711 0.458 Amp Peak 15(13q12.2) 0 (0%) 209 0.097693 1 0.23912 1 0.0018789 1 0.48696 1 2.6459e-09 2.16e-06 1 1 0.023817 1 0.0023717 1 0.096168 1 0.032254 1 NA NA 0.0016144 1 Amp Peak 16(13q22.1) 0 (0%) 204 0.043611 1 0.44433 1 0.024905 1 0.19067 1 3.2501e-08 2.65e-05 0.50268 1 0.024833 1 0.00060789 0.474 0.2835 1 0.17241 1 NA NA 0.011829 1 Amp Peak 17(15q26.1) 0 (0%) 532 0.07992 1 0.75334 1 0.29134 1 0.057311 1 0.42861 1 0.14067 1 0.6491 1 0.032314 1 0.60166 1 0.054694 1 NA NA 0.12374 1 Amp Peak 18(16p11.2) 0 (0%) 414 0.84342 1 0.25968 1 0.91761 1 0.64275 1 0.002471 1 0.71528 1 0.10805 1 0.0022542 1 0.27752 1 0.016211 1 NA NA 0.00088602 0.682 Amp Peak 19(17q12) 0 (0%) 431 0.49167 1 0.36274 1 0.591 1 0.10157 1 0.45619 1 0.46209 1 0.011233 1 0.012307 1 0.073227 1 0.35063 1 NA NA 0.15506 1 Amp Peak 20(17q24.1) 0 (0%) 447 0.040415 1 0.24469 1 0.91078 1 0.61559 1 0.088373 1 0.69148 1 0.053459 1 0.044292 1 0.23213 1 0.71139 1 NA NA 0.48335 1 Amp Peak 21(19p13.2) 0 (0%) 478 0.14044 1 0.49273 1 0.21612 1 0.21937 1 0.051391 1 1 1 0.23016 1 0.21937 1 0.11885 1 0.99357 1 NA NA 0.57846 1 Amp Peak 22(19q12) 0 (0%) 453 0.62463 1 0.94086 1 0.25648 1 0.2196 1 0.02922 1 0.69223 1 0.13535 1 0.58297 1 0.47416 1 0.40295 1 NA NA 0.78497 1 Amp Peak 23(20p11.23) 0 (0%) 274 0.70235 1 0.92117 1 0.019432 1 0.044575 1 0.00072981 0.563 0.18062 1 0.0014321 1 0.16921 1 0.38153 1 0.29466 1 NA NA 0.0064219 1 Amp Peak 24(20p11.21) 0 (0%) 236 0.80585 1 0.70939 1 0.0078392 1 0.050538 1 1.139e-05 0.00919 0.3203 1 0.0032911 1 0.69069 1 0.6797 1 0.92336 1 NA NA 0.037374 1 Amp Peak 25(20q11.21) 0 (0%) 136 0.30999 1 0.82317 1 9.1269e-06 0.00737 0.32657 1 7.95e-12 6.52e-09 0.69319 1 0.005474 1 0.052604 1 0.068473 1 0.33714 1 NA NA 0.00069945 0.541 Amp Peak 26(20q12) 0 (0%) 134 0.26772 1 0.72637 1 4.7389e-06 0.00383 0.32471 1 5.4128e-13 4.44e-10 0.69249 1 0.0013279 1 0.044591 1 0.06828 1 0.38514 1 NA NA 0.00019021 0.151 Amp Peak 27(20q13.32) 0 (0%) 131 0.36099 1 0.65814 1 2.1798e-05 0.0175 0.54984 1 8.79e-12 7.2e-09 0.69177 1 0.0043553 1 0.050135 1 0.06713 1 0.24018 1 NA NA 0.00065728 0.509 Amp Peak 28(Xq28) 0 (0%) 454 0.25196 1 0.20889 1 0.42107 1 0.75835 1 0.025161 1 0.69254 1 0.22773 1 0.01676 1 0.35797 1 0.27084 1 NA NA 0.070701 1 Del Peak 1(1p36.11) 0 (0%) 353 0.052531 1 0.10465 1 0.12589 1 0.3454 1 0.006504 1 0.73947 1 0.00057926 0.453 0.013394 1 0.1015 1 0.00052414 0.411 NA NA 0.026316 1 Del Peak 2(1p33) 0 (0%) 419 0.018487 1 0.83622 1 0.40103 1 0.85115 1 0.079002 1 0.70913 1 0.010282 1 0.023253 1 0.31409 1 0.014267 1 NA NA 0.022046 1 Del Peak 3(1p13.2) 0 (0%) 418 0.071995 1 0.84088 1 0.24819 1 0.63979 1 0.13505 1 0.26519 1 0.0012266 0.933 0.0024658 1 0.24337 1 0.0026835 1 NA NA 0.006568 1 Del Peak 4(2p12) 0 (0%) 555 0.80958 1 0.17875 1 0.0034646 1 0.82099 1 0.020628 1 0.2745 1 0.56042 1 0.88235 1 0.88514 1 0.31452 1 NA NA 0.35835 1 Del Peak 5(2q22.1) 0 (0%) 542 0.85484 1 0.56386 1 0.84151 1 0.47446 1 0.92719 1 1 1 0.69094 1 0.82903 1 1 1 0.91166 1 NA NA 0.47365 1 Del Peak 6(2q37.2) 0 (0%) 545 0.8445 1 0.13904 1 0.83467 1 0.4563 1 0.94377 1 1 1 0.1343 1 0.7298 1 0.39772 1 0.86721 1 NA NA 0.2727 1 Del Peak 7(3p26.3) 0 (0%) 491 0.00064887 0.504 0.85516 1 0.69074 1 0.7228 1 0.19322 1 0.13106 1 0.0010129 0.778 0.017193 1 0.0636 1 0.028384 1 NA NA 0.0083702 1 Del Peak 8(3p14.2) 0 (0%) 471 0.23056 1 0.57757 1 0.8078 1 0.66525 1 0.42213 1 0.66902 1 0.031008 1 0.21252 1 0.1731 1 0.02482 1 NA NA 0.14434 1 Del Peak 9(3q26.31) 0 (0%) 519 0.70375 1 0.99574 1 0.87444 1 0.12027 1 0.042484 1 0.21553 1 0.32513 1 0.020227 1 0.19078 1 0.49235 1 NA NA 0.0023932 1 Del Peak 10(4p16.1) 0 (0%) 393 0.042927 1 0.9543 1 0.056075 1 0.10597 1 0.027453 1 2.7777e-05 0.0222 0.012485 1 0.0049541 1 0.050769 1 0.0016221 1 NA NA 0.0063861 1 Del Peak 11(4q22.1) 0 (0%) 377 0.19713 1 0.41962 1 0.004171 1 0.18784 1 0.0013864 1 0.0011368 0.867 0.36206 1 0.0034356 1 0.7125 1 0.0026475 1 NA NA 0.053511 1 Del Peak 12(4q35.1) 0 (0%) 364 0.28211 1 0.3025 1 0.032529 1 0.86228 1 0.020537 1 0.0018523 1 0.63758 1 0.067442 1 0.65764 1 0.024029 1 NA NA 0.24103 1 Del Peak 13(5q11.2) 0 (0%) 435 0.15868 1 0.086616 1 0.038855 1 0.9225 1 0.027116 1 0.001029 0.789 0.022424 1 0.037303 1 0.59547 1 0.02338 1 NA NA 0.026552 1 Del Peak 14(5q22.2) 0 (0%) 403 0.081955 1 0.35869 1 0.15523 1 0.52403 1 0.062172 1 0.00038155 0.301 0.030009 1 0.05842 1 0.21001 1 0.14698 1 NA NA 0.068423 1 Del Peak 15(6p25.3) 0 (0%) 497 0.59898 1 0.068329 1 1 1 0.088452 1 0.54551 1 0.35064 1 0.32353 1 0.47697 1 0.32902 1 0.73365 1 NA NA 0.6644 1 Del Peak 16(6q26) 0 (0%) 485 0.032049 1 0.90048 1 0.3677 1 0.30211 1 0.047908 1 0.63731 1 0.037979 1 0.040981 1 0.093922 1 0.0091039 1 NA NA 0.10896 1 Del Peak 17(7q31.1) 0 (0%) 560 0.91805 1 0.32888 1 1 1 0.30514 1 0.50255 1 1 1 0.33152 1 0.69569 1 0.72348 1 0.60608 1 NA NA 0.84875 1 Del Peak 18(8p23.2) 0 (0%) 303 0.60593 1 0.20492 1 2.4001e-05 0.0193 0.15457 1 2.7216e-05 0.0219 0.015478 1 0.0093479 1 0.0001638 0.13 0.007675 1 0.00045601 0.358 NA NA 0.0013199 1 Del Peak 19(8p22) 0 (0%) 290 0.58122 1 0.31673 1 0.00037949 0.299 0.35771 1 0.00024508 0.194 0.019623 1 0.0035721 1 1.7926e-05 0.0144 0.010363 1 0.00011438 0.0912 NA NA 0.00036998 0.292 Del Peak 20(8p11.21) 0 (0%) 451 0.59894 1 0.32897 1 0.030984 1 0.47777 1 0.16312 1 0.41363 1 0.08062 1 0.036424 1 0.1166 1 0.09144 1 NA NA 0.076975 1 Del Peak 21(8q11.1) 0 (0%) 531 0.89082 1 0.38174 1 0.1598 1 0.20835 1 0.41288 1 0.51408 1 0.0019845 1 0.047042 1 0.37573 1 0.29205 1 NA NA 0.033456 1 Del Peak 22(9p24.2) 0 (0%) 497 0.0018164 1 0.12017 1 0.4958 1 0.051319 1 0.45197 1 0.35064 1 0.022698 1 0.06618 1 0.1166 1 0.2283 1 NA NA 0.49558 1 Del Peak 23(10p15.3) 0 (0%) 473 0.54809 1 0.028184 1 0.27059 1 0.91293 1 0.361 1 0.0014492 1 0.17796 1 0.024148 1 0.94897 1 0.044425 1 NA NA 0.067175 1 Del Peak 24(10q21.1) 0 (0%) 457 0.85162 1 0.015249 1 0.42095 1 0.53456 1 0.11834 1 0.0032571 1 0.68141 1 0.094549 1 0.39286 1 0.16317 1 NA NA 0.17978 1 Del Peak 25(10q23.31) 0 (0%) 430 0.55339 1 0.0066844 1 0.040834 1 0.92331 1 0.020485 1 0.0012972 0.986 0.061388 1 0.011854 1 0.49051 1 0.18799 1 NA NA 0.050757 1 Del Peak 26(10q25.2) 0 (0%) 435 0.77888 1 0.071526 1 0.12773 1 0.84571 1 0.032166 1 0.001029 0.789 0.42739 1 0.011442 1 0.45942 1 0.16124 1 NA NA 0.16537 1 Del Peak 27(11q22.3) 0 (0%) 471 0.50247 1 0.39624 1 0.08601 1 0.58718 1 0.052188 1 0.06099 1 0.65415 1 0.011366 1 0.63134 1 0.044234 1 NA NA 0.75886 1 Del Peak 28(12p13.1) 0 (0%) 498 0.4642 1 0.47229 1 0.025634 1 0.32608 1 0.00067261 0.521 0.34447 1 0.098533 1 0.22852 1 0.76792 1 0.92127 1 NA NA 0.58874 1 Del Peak 29(12q21.2) 0 (0%) 495 0.66876 1 0.7092 1 0.077939 1 0.63138 1 0.0083291 1 0.11688 1 0.090585 1 0.055108 1 1 1 0.082485 1 NA NA 0.094735 1 Del Peak 30(14q22.1) 0 (0%) 390 0.21115 1 0.23312 1 0.021177 1 0.42181 1 1.1468e-06 0.00093 0.72544 1 0.14265 1 0.017079 1 0.85598 1 0.69253 1 NA NA 0.55201 1 Del Peak 31(15q11.2) 0 (0%) 342 0.76987 1 0.61767 1 0.21589 1 0.5513 1 0.055249 1 0.03501 1 0.25795 1 0.088894 1 0.88763 1 0.06061 1 NA NA 0.087714 1 Del Peak 32(15q21.1) 0 (0%) 348 0.43482 1 0.60321 1 0.035475 1 0.30629 1 0.025238 1 0.032746 1 0.22181 1 0.084223 1 0.55914 1 0.055341 1 NA NA 0.21836 1 Del Peak 33(15q22.33) 0 (0%) 358 0.5521 1 0.32702 1 0.012045 1 0.73012 1 0.0058304 1 0.0022947 1 0.20522 1 0.057973 1 0.69973 1 0.028423 1 NA NA 0.013049 1 Del Peak 34(16p13.3) 0 (0%) 517 8.3329e-05 0.0666 0.2537 1 0.35861 1 0.88985 1 0.42118 1 0.60891 1 0.3799 1 0.17903 1 0.79677 1 0.059027 1 NA NA 0.04979 1 Del Peak 35(16q23.1) 0 (0%) 503 0.0015206 1 0.26369 1 0.40188 1 0.16539 1 0.50777 1 1 1 0.94979 1 0.46594 1 0.94148 1 0.25003 1 NA NA 0.32218 1 Del Peak 36(17p12) 0 (0%) 232 0.6744 1 0.09827 1 0.0016883 1 0.55134 1 6.5514e-08 5.33e-05 0.32482 1 0.039663 1 0.0006087 0.474 0.26074 1 0.00263 1 NA NA 0.0022914 1 Del Peak 37(17q24.3) 0 (0%) 491 0.71779 1 0.30528 1 0.79264 1 0.12359 1 0.98884 1 0.62624 1 0.34786 1 0.0010815 0.827 0.31641 1 0.042953 1 NA NA 0.12309 1 Del Peak 38(18p11.31) 0 (0%) 234 0.97588 1 0.058985 1 1.8223e-06 0.00148 0.93223 1 1.5167e-16 1.25e-13 0.32245 1 0.00054739 0.429 0.13752 1 0.019912 1 0.48674 1 NA NA 0.0023155 1 Del Peak 39(18q12.2) 0 (0%) 189 0.92334 1 0.081686 1 1.5712e-09 1.28e-06 0.42434 1 8.2646e-18 6.82e-15 0.034018 1 0.004222 1 0.0048401 1 0.056001 1 0.0096324 1 NA NA 0.00058384 0.456 Del Peak 40(18q21.2) 0 (0%) 172 0.49328 1 0.082278 1 1.0696e-09 8.75e-07 0.14383 1 3.5444e-16 2.92e-13 0.063709 1 0.0015012 1 0.00022668 0.18 0.055797 1 0.0011314 0.864 NA NA 4.4873e-05 0.0359 Del Peak 41(18q22.1) 0 (0%) 177 0.34323 1 0.22143 1 1.9413e-07 0.000158 0.20564 1 2.0484e-15 1.68e-12 0.063183 1 0.0022144 1 0.0017694 1 0.10831 1 0.0020916 1 NA NA 0.00010413 0.0831 Del Peak 42(19p13.3) 0 (0%) 483 0.39642 1 0.18275 1 0.03049 1 0.73377 1 0.06687 1 0.6414 1 0.026892 1 0.00097863 0.753 0.17898 1 0.0027166 1 NA NA 0.0019966 1 Del Peak 43(19q13.43) 0 (0%) 507 0.48593 1 0.81573 1 0.14616 1 0.24671 1 0.41165 1 0.2888 1 0.070302 1 0.10097 1 0.81197 1 0.018788 1 NA NA 0.0072428 1 Del Peak 44(20p12.1) 0 (0%) 396 0.1064 1 0.63099 1 0.044484 1 0.27912 1 0.14022 1 0.063204 1 0.82986 1 0.62345 1 0.43774 1 0.79287 1 NA NA 0.2574 1 Del Peak 45(20p12.1) 0 (0%) 396 0.1064 1 0.63099 1 0.044484 1 0.27912 1 0.14022 1 0.063204 1 0.82986 1 0.62345 1 0.43774 1 0.79287 1 NA NA 0.2574 1 Del Peak 46(21q11.2) 0 (0%) 380 0.53434 1 0.7214 1 0.0055452 1 0.59668 1 0.0006209 0.482 0.17539 1 0.60615 1 0.30715 1 0.73011 1 0.0041227 1 NA NA 0.37941 1 Del Peak 47(22q13.32) 0 (0%) 371 0.044116 1 0.67219 1 0.17266 1 0.86129 1 0.0097038 1 0.72731 1 0.026618 1 0.0023664 1 0.52056 1 0.010922 1 NA NA 0.035986 1