This pipeline computes the correlation between significant copy number variation (cnv) genes and molecular subtypes.
Testing the association between copy number variation of 75 peak regions and 12 molecular subtypes across 575 patients, 214 significant findings detected with Q value < 0.25.
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Amp Peak 1(1q31.1) cnvs correlated to 'CN_CNMF'.
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Amp Peak 2(2q33.1) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Amp Peak 3(5p12) cnvs correlated to 'CN_CNMF'.
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Amp Peak 5(6p21.1) cnvs correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 6(7p21.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 7(8p11.23) cnvs correlated to 'CN_CNMF'.
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Amp Peak 8(8p11.21) cnvs correlated to 'CN_CNMF'.
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Amp Peak 9(8q12.1) cnvs correlated to 'CN_CNMF'.
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Amp Peak 10(8q24.21) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CNMF'.
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Amp Peak 12(11p15.5) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 14(13q12.13) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 15(13q12.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 16(13q22.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 18(16p11.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 19(17q12) cnvs correlated to 'CN_CNMF'.
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Amp Peak 20(17q24.1) cnvs correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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Amp Peak 21(19p13.2) cnvs correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 22(19q12) cnvs correlated to 'CN_CNMF'.
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Amp Peak 23(20p11.23) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 24(20p11.21) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 25(20q11.21) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 26(20q12) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 27(20q13.32) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Amp Peak 28(Xq28) cnvs correlated to 'CN_CNMF'.
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Del Peak 1(1p36.11) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 2(1p33) cnvs correlated to 'CN_CNMF'.
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Del Peak 3(1p13.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 10(4p16.1) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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Del Peak 11(4q22.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 12(4q35.1) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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Del Peak 13(5q11.2) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 14(5q22.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 18(8p23.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 19(8p22) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 20(8p11.21) cnvs correlated to 'CN_CNMF'.
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Del Peak 23(10p15.3) cnvs correlated to 'CN_CNMF'.
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Del Peak 24(10q21.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 25(10q23.31) cnvs correlated to 'CN_CNMF'.
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Del Peak 26(10q25.2) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 28(12p13.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 29(12q21.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 30(14q22.1) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 31(15q11.2) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 32(15q21.1) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 33(15q22.33) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 36(17p12) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 38(18p11.31) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 39(18q12.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 40(18q21.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 41(18q22.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 42(19p13.3) cnvs correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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Del Peak 43(19q13.43) cnvs correlated to 'CN_CNMF'.
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Del Peak 44(20p12.1) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Del Peak 45(20p12.1) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Del Peak 46(21q11.2) cnvs correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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Del Peak 47(22q13.32) cnvs correlated to 'CN_CNMF'.
Molecular subtypes |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Chi-square test | |
Amp Peak 14(13q12 13) | 0 (0%) | 204 |
1.92e-07 (0.00015) |
4.12e-06 (0.00311) |
6.42e-44 (5.75e-41) |
1.67e-10 (1.36e-07) |
0.0131 (1.00) |
0.064 (1.00) |
8e-11 (6.57e-08) |
4.97e-07 (0.000386) |
0.0136 (1.00) |
0.237 (1.00) |
5.89e-09 (4.69e-06) |
1.28e-12 (1.07e-09) |
Amp Peak 15(13q12 2) | 0 (0%) | 209 |
4.65e-06 (0.00351) |
5.25e-05 (0.038) |
2.2e-45 (1.98e-42) |
3.96e-11 (3.26e-08) |
0.0319 (1.00) |
0.169 (1.00) |
2.13e-10 (1.74e-07) |
1.08e-06 (0.000831) |
0.026 (1.00) |
0.285 (1.00) |
1.33e-07 (0.000104) |
3.95e-12 (3.28e-09) |
Amp Peak 16(13q22 1) | 0 (0%) | 204 |
9.73e-06 (0.00727) |
0.000193 (0.137) |
7.69e-42 (6.86e-39) |
4.91e-09 (3.92e-06) |
0.0808 (1.00) |
0.174 (1.00) |
9.82e-10 (7.98e-07) |
5.36e-07 (0.000415) |
0.0301 (1.00) |
0.0471 (1.00) |
8.54e-07 (0.000658) |
1.26e-09 (1.02e-06) |
Amp Peak 24(20p11 21) | 0 (0%) | 236 |
0.000231 (0.162) |
1.81e-05 (0.0133) |
8.57e-23 (7.51e-20) |
3.01e-05 (0.022) |
0.00713 (1.00) |
0.158 (1.00) |
4.83e-09 (3.87e-06) |
3.8e-09 (3.05e-06) |
0.107 (1.00) |
0.188 (1.00) |
0.000161 (0.115) |
2.14e-09 (1.73e-06) |
Amp Peak 25(20q11 21) | 0 (0%) | 136 |
1.19e-13 (1e-10) |
9.59e-13 (8.04e-10) |
1.54e-42 (1.38e-39) |
3.39e-16 (2.92e-13) |
0.0129 (1.00) |
0.0103 (1.00) |
1.59e-19 (1.39e-16) |
5.25e-18 (4.55e-15) |
0.124 (1.00) |
0.0189 (1.00) |
5.58e-10 (4.55e-07) |
6.02e-23 (5.28e-20) |
Amp Peak 26(20q12) | 0 (0%) | 134 |
1.06e-14 (9e-12) |
4.18e-14 (3.53e-11) |
5.84e-43 (5.22e-40) |
5.9e-15 (5.03e-12) |
0.00687 (1.00) |
0.00555 (1.00) |
5.42e-19 (4.72e-16) |
1.81e-17 (1.57e-14) |
0.065 (1.00) |
0.00779 (1.00) |
2.44e-11 (2.02e-08) |
1.03e-24 (9.05e-22) |
Amp Peak 27(20q13 32) | 0 (0%) | 131 |
7.8e-14 (6.57e-11) |
2.02e-12 (1.68e-09) |
5.66e-43 (5.07e-40) |
6.32e-14 (5.34e-11) |
0.013 (1.00) |
0.0044 (1.00) |
5.42e-19 (4.72e-16) |
1.81e-17 (1.57e-14) |
0.117 (1.00) |
0.033 (1.00) |
2.33e-10 (1.91e-07) |
3.52e-23 (3.09e-20) |
Del Peak 30(14q22 1) | 0 (0%) | 390 |
0.000747 (0.502) |
0.000117 (0.0842) |
1.95e-28 (1.73e-25) |
2.54e-06 (0.00193) |
0.000318 (0.22) |
0.121 (1.00) |
4.09e-08 (3.23e-05) |
3.08e-05 (0.0225) |
0.127 (1.00) |
0.439 (1.00) |
3.91e-07 (0.000305) |
7.68e-07 (0.000593) |
Del Peak 36(17p12) | 0 (0%) | 232 |
8.38e-08 (6.59e-05) |
2.2e-05 (0.0162) |
2.01e-34 (1.78e-31) |
4.41e-08 (3.47e-05) |
0.103 (1.00) |
0.0247 (1.00) |
1.6e-08 (1.27e-05) |
3.32e-06 (0.00251) |
0.052 (1.00) |
0.673 (1.00) |
1.88e-05 (0.0139) |
4.68e-11 (3.85e-08) |
Del Peak 38(18p11 31) | 0 (0%) | 234 |
5.8e-12 (4.81e-09) |
6.24e-10 (5.08e-07) |
1.19e-41 (1.06e-38) |
1.08e-15 (9.29e-13) |
0.101 (1.00) |
0.0305 (1.00) |
1.4e-20 (1.22e-17) |
5.08e-15 (4.35e-12) |
0.0183 (1.00) |
0.386 (1.00) |
5.67e-12 (4.7e-09) |
1.75e-14 (1.48e-11) |
Del Peak 39(18q12 2) | 0 (0%) | 189 |
1.01e-09 (8.19e-07) |
4.59e-09 (3.68e-06) |
1.29e-49 (1.16e-46) |
1.67e-17 (1.45e-14) |
0.0431 (1.00) |
0.028 (1.00) |
2.84e-19 (2.47e-16) |
1.22e-10 (1e-07) |
0.00579 (1.00) |
0.059 (1.00) |
9.43e-12 (7.81e-09) |
1.27e-18 (1.11e-15) |
Del Peak 40(18q21 2) | 0 (0%) | 172 |
3.72e-10 (3.03e-07) |
1.64e-08 (1.3e-05) |
1.24e-50 (1.11e-47) |
5.25e-15 (4.48e-12) |
0.0134 (1.00) |
0.0247 (1.00) |
2.83e-15 (2.43e-12) |
1.42e-09 (1.15e-06) |
0.000657 (0.446) |
0.126 (1.00) |
2.32e-11 (1.92e-08) |
2.83e-15 (2.43e-12) |
Del Peak 41(18q22 1) | 0 (0%) | 177 |
2.01e-09 (1.63e-06) |
1.23e-07 (9.65e-05) |
9.55e-53 (8.59e-50) |
2.2e-15 (1.9e-12) |
0.0334 (1.00) |
0.02 (1.00) |
2.83e-15 (2.43e-12) |
5.84e-09 (4.65e-06) |
0.00128 (0.837) |
0.171 (1.00) |
4.12e-12 (3.43e-09) |
4.24e-15 (3.63e-12) |
Del Peak 18(8p23 2) | 0 (0%) | 303 |
0.000258 (0.179) |
0.000146 (0.104) |
2.13e-34 (1.88e-31) |
1.06e-06 (0.000817) |
0.0964 (1.00) |
0.00316 (1.00) |
1.52e-05 (0.0112) |
0.000561 (0.383) |
0.802 (1.00) |
0.399 (1.00) |
3.49e-08 (2.76e-05) |
2.6e-06 (0.00197) |
Del Peak 19(8p22) | 0 (0%) | 290 |
0.00118 (0.774) |
0.000857 (0.569) |
1.58e-37 (1.41e-34) |
6.7e-07 (0.000518) |
0.1 (1.00) |
0.00225 (1.00) |
1.05e-06 (0.00081) |
0.000223 (0.157) |
0.763 (1.00) |
0.642 (1.00) |
2.34e-06 (0.00178) |
2.04e-06 (0.00155) |
Amp Peak 6(7p21 3) | 0 (0%) | 238 |
0.0023 (1.00) |
0.000932 (0.618) |
7.91e-22 (6.93e-19) |
1.04e-06 (0.000803) |
0.308 (1.00) |
0.0266 (1.00) |
6.87e-10 (5.59e-07) |
3.15e-06 (0.00238) |
0.0224 (1.00) |
0.00259 (1.00) |
0.00463 (1.00) |
3.8e-11 (3.14e-08) |
Amp Peak 12(11p15 5) | 0 (0%) | 446 |
0.000202 (0.142) |
0.000684 (0.463) |
1.84e-06 (0.0014) |
0.00797 (1.00) |
0.0056 (1.00) |
0.238 (1.00) |
4.75e-05 (0.0345) |
7.68e-06 (0.00576) |
0.352 (1.00) |
0.00906 (1.00) |
0.00193 (1.00) |
2.77e-08 (2.2e-05) |
Del Peak 1(1p36 11) | 0 (0%) | 353 |
0.000114 (0.0822) |
0.00379 (1.00) |
2.21e-13 (1.85e-10) |
9.01e-05 (0.0649) |
0.0468 (1.00) |
0.148 (1.00) |
1.05e-05 (0.00784) |
6.54e-05 (0.0472) |
0.158 (1.00) |
0.0183 (1.00) |
0.0392 (1.00) |
0.00176 (1.00) |
Del Peak 31(15q11 2) | 0 (0%) | 342 |
0.000821 (0.548) |
0.00487 (1.00) |
1.2e-23 (1.06e-20) |
0.00637 (1.00) |
0.35 (1.00) |
0.359 (1.00) |
1.41e-06 (0.00108) |
1.38e-05 (0.0102) |
0.478 (1.00) |
0.111 (1.00) |
0.000233 (0.163) |
1.69e-05 (0.0125) |
Del Peak 32(15q21 1) | 0 (0%) | 348 |
0.000836 (0.556) |
0.0239 (1.00) |
2.43e-21 (2.13e-18) |
0.00442 (1.00) |
0.13 (1.00) |
0.13 (1.00) |
2.2e-07 (0.000172) |
2.3e-05 (0.0168) |
0.742 (1.00) |
0.459 (1.00) |
0.000249 (0.173) |
6.46e-05 (0.0467) |
Del Peak 33(15q22 33) | 0 (0%) | 358 |
0.000199 (0.14) |
0.00116 (0.761) |
4.49e-23 (3.95e-20) |
0.00104 (0.683) |
0.661 (1.00) |
0.463 (1.00) |
5.81e-09 (4.64e-06) |
5.5e-06 (0.00414) |
0.865 (1.00) |
0.117 (1.00) |
0.000688 (0.465) |
1.14e-05 (0.00846) |
Amp Peak 2(2q33 1) | 0 (0%) | 452 |
0.0883 (1.00) |
0.000319 (0.22) |
1.52e-06 (0.00116) |
0.00973 (1.00) |
0.596 (1.00) |
0.901 (1.00) |
0.000173 (0.122) |
0.000166 (0.118) |
0.181 (1.00) |
0.00129 (0.844) |
0.402 (1.00) |
0.00177 (1.00) |
Amp Peak 18(16p11 2) | 0 (0%) | 414 |
0.0179 (1.00) |
0.00574 (1.00) |
1.33e-20 (1.16e-17) |
0.000181 (0.128) |
0.0915 (1.00) |
0.0157 (1.00) |
2.17e-05 (0.016) |
0.00369 (1.00) |
0.811 (1.00) |
0.11 (1.00) |
0.0049 (1.00) |
3.25e-05 (0.0237) |
Amp Peak 23(20p11 23) | 0 (0%) | 274 |
0.00547 (1.00) |
0.00422 (1.00) |
5.56e-17 (4.8e-14) |
0.0169 (1.00) |
0.00142 (0.928) |
0.178 (1.00) |
1.06e-05 (0.00793) |
2.29e-05 (0.0168) |
0.353 (1.00) |
0.425 (1.00) |
0.000725 (0.487) |
2.07e-05 (0.0152) |
Del Peak 10(4p16 1) | 0 (0%) | 393 |
0.0654 (1.00) |
0.437 (1.00) |
1.65e-12 (1.38e-09) |
0.00114 (0.748) |
0.416 (1.00) |
0.923 (1.00) |
1.32e-06 (0.00101) |
0.000143 (0.102) |
0.622 (1.00) |
0.117 (1.00) |
0.000361 (0.248) |
0.000712 (0.48) |
Del Peak 11(4q22 1) | 0 (0%) | 377 |
0.0216 (1.00) |
0.031 (1.00) |
1.25e-14 (1.06e-11) |
6.99e-05 (0.0504) |
0.767 (1.00) |
0.77 (1.00) |
7.1e-06 (0.00533) |
0.00018 (0.127) |
0.148 (1.00) |
0.409 (1.00) |
0.000507 (0.347) |
0.000712 (0.48) |
Del Peak 12(4q35 1) | 0 (0%) | 364 |
0.021 (1.00) |
0.17 (1.00) |
1.25e-13 (1.05e-10) |
0.000595 (0.406) |
0.464 (1.00) |
0.811 (1.00) |
5.07e-05 (0.0367) |
3.74e-05 (0.0272) |
0.523 (1.00) |
0.743 (1.00) |
3.7e-05 (0.027) |
0.000988 (0.653) |
Del Peak 13(5q11 2) | 0 (0%) | 435 |
0.0006 (0.408) |
0.00466 (1.00) |
2.13e-12 (1.78e-09) |
0.00603 (1.00) |
0.103 (1.00) |
0.547 (1.00) |
0.000317 (0.22) |
0.00205 (1.00) |
1 (1.00) |
0.758 (1.00) |
0.000128 (0.0913) |
3.17e-05 (0.0231) |
Amp Peak 10(8q24 21) | 0 (0%) | 230 |
0.239 (1.00) |
0.000227 (0.159) |
3.18e-35 (2.82e-32) |
0.0025 (1.00) |
0.0427 (1.00) |
0.283 (1.00) |
0.000294 (0.204) |
0.0109 (1.00) |
0.251 (1.00) |
0.176 (1.00) |
0.00995 (1.00) |
0.00175 (1.00) |
Del Peak 26(10q25 2) | 0 (0%) | 435 |
0.318 (1.00) |
0.162 (1.00) |
3.06e-12 (2.55e-09) |
0.166 (1.00) |
0.00922 (1.00) |
0.245 (1.00) |
0.000239 (0.166) |
0.000324 (0.224) |
0.972 (1.00) |
0.779 (1.00) |
0.00411 (1.00) |
0.00923 (1.00) |
Amp Peak 5(6p21 1) | 0 (0%) | 429 |
0.0224 (1.00) |
0.00184 (1.00) |
3.97e-14 (3.36e-11) |
0.2 (1.00) |
0.699 (1.00) |
0.369 (1.00) |
0.000931 (0.618) |
0.0151 (1.00) |
0.531 (1.00) |
0.00678 (1.00) |
0.0211 (1.00) |
0.000139 (0.0993) |
Amp Peak 20(17q24 1) | 0 (0%) | 447 |
0.0257 (1.00) |
0.00126 (0.824) |
1.54e-08 (1.23e-05) |
0.000678 (0.459) |
0.124 (1.00) |
0.00558 (1.00) |
0.000201 (0.141) |
0.00309 (1.00) |
0.00127 (0.832) |
0.0419 (1.00) |
0.953 (1.00) |
0.00403 (1.00) |
Amp Peak 21(19p13 2) | 0 (0%) | 478 |
0.108 (1.00) |
0.437 (1.00) |
8.87e-08 (6.96e-05) |
0.0169 (1.00) |
0.932 (1.00) |
0.39 (1.00) |
0.329 (1.00) |
0.418 (1.00) |
0.274 (1.00) |
0.131 (1.00) |
0.357 (1.00) |
0.000267 (0.185) |
Del Peak 42(19p13 3) | 0 (0%) | 483 |
0.117 (1.00) |
0.151 (1.00) |
1.35e-05 (0.01) |
0.944 (1.00) |
0.636 (1.00) |
0.666 (1.00) |
0.0329 (1.00) |
0.00869 (1.00) |
0.579 (1.00) |
0.911 (1.00) |
0.0134 (1.00) |
0.000342 (0.236) |
Del Peak 44(20p12 1) | 0 (0%) | 396 |
0.0197 (1.00) |
0.0203 (1.00) |
6.5e-15 (5.54e-12) |
8.89e-06 (0.00666) |
0.328 (1.00) |
0.00712 (1.00) |
0.0232 (1.00) |
0.0151 (1.00) |
0.223 (1.00) |
0.976 (1.00) |
0.047 (1.00) |
0.0241 (1.00) |
Del Peak 45(20p12 1) | 0 (0%) | 396 |
0.0197 (1.00) |
0.0203 (1.00) |
6.5e-15 (5.54e-12) |
8.89e-06 (0.00666) |
0.328 (1.00) |
0.00712 (1.00) |
0.0232 (1.00) |
0.0151 (1.00) |
0.223 (1.00) |
0.976 (1.00) |
0.047 (1.00) |
0.0241 (1.00) |
Del Peak 46(21q11 2) | 0 (0%) | 380 |
0.0224 (1.00) |
0.0216 (1.00) |
4.07e-09 (3.26e-06) |
0.0142 (1.00) |
0.584 (1.00) |
0.213 (1.00) |
0.000647 (0.44) |
0.00527 (1.00) |
0.234 (1.00) |
0.0494 (1.00) |
0.000143 (0.102) |
0.0226 (1.00) |
Amp Peak 1(1q31 1) | 0 (0%) | 441 |
0.584 (1.00) |
0.308 (1.00) |
0.000205 (0.144) |
0.528 (1.00) |
0.474 (1.00) |
0.289 (1.00) |
0.0893 (1.00) |
0.32 (1.00) |
0.765 (1.00) |
0.944 (1.00) |
0.228 (1.00) |
0.213 (1.00) |
Amp Peak 3(5p12) | 0 (0%) | 468 |
0.0977 (1.00) |
0.435 (1.00) |
6.55e-06 (0.00492) |
0.794 (1.00) |
0.0746 (1.00) |
0.721 (1.00) |
0.102 (1.00) |
0.0189 (1.00) |
0.889 (1.00) |
0.347 (1.00) |
0.0102 (1.00) |
0.229 (1.00) |
Amp Peak 7(8p11 23) | 0 (0%) | 379 |
0.396 (1.00) |
0.0486 (1.00) |
2.83e-23 (2.49e-20) |
0.263 (1.00) |
0.826 (1.00) |
0.5 (1.00) |
0.235 (1.00) |
0.781 (1.00) |
0.0154 (1.00) |
0.0772 (1.00) |
0.139 (1.00) |
0.327 (1.00) |
Amp Peak 8(8p11 21) | 0 (0%) | 337 |
0.173 (1.00) |
0.00854 (1.00) |
3.33e-31 (2.95e-28) |
0.301 (1.00) |
0.378 (1.00) |
0.394 (1.00) |
0.41 (1.00) |
0.735 (1.00) |
0.0815 (1.00) |
0.201 (1.00) |
0.252 (1.00) |
0.267 (1.00) |
Amp Peak 9(8q12 1) | 0 (0%) | 266 |
0.143 (1.00) |
0.000749 (0.502) |
1.91e-36 (1.7e-33) |
0.0209 (1.00) |
0.0183 (1.00) |
0.0546 (1.00) |
0.000512 (0.35) |
0.00729 (1.00) |
0.102 (1.00) |
0.146 (1.00) |
0.00621 (1.00) |
0.00624 (1.00) |
Amp Peak 19(17q12) | 0 (0%) | 431 |
0.0443 (1.00) |
0.0276 (1.00) |
3.46e-09 (2.78e-06) |
0.0121 (1.00) |
0.23 (1.00) |
0.0592 (1.00) |
0.000424 (0.291) |
0.00212 (1.00) |
0.039 (1.00) |
0.232 (1.00) |
0.812 (1.00) |
0.0717 (1.00) |
Amp Peak 22(19q12) | 0 (0%) | 453 |
0.0281 (1.00) |
0.039 (1.00) |
6.23e-08 (4.9e-05) |
0.166 (1.00) |
0.258 (1.00) |
0.326 (1.00) |
0.0747 (1.00) |
0.0789 (1.00) |
0.71 (1.00) |
0.49 (1.00) |
0.407 (1.00) |
0.0125 (1.00) |
Amp Peak 28(Xq28) | 0 (0%) | 454 |
0.436 (1.00) |
0.884 (1.00) |
1.72e-06 (0.00131) |
0.161 (1.00) |
0.00335 (1.00) |
0.0093 (1.00) |
0.171 (1.00) |
0.024 (1.00) |
0.99 (1.00) |
0.783 (1.00) |
0.381 (1.00) |
0.168 (1.00) |
Del Peak 2(1p33) | 0 (0%) | 419 |
0.0306 (1.00) |
0.0913 (1.00) |
8.95e-13 (7.51e-10) |
0.000811 (0.542) |
0.801 (1.00) |
0.574 (1.00) |
0.0016 (1.00) |
0.00208 (1.00) |
0.532 (1.00) |
0.0159 (1.00) |
0.117 (1.00) |
0.00143 (0.928) |
Del Peak 3(1p13 2) | 0 (0%) | 418 |
0.288 (1.00) |
0.129 (1.00) |
3.38e-09 (2.72e-06) |
0.0264 (1.00) |
0.937 (1.00) |
0.702 (1.00) |
0.0132 (1.00) |
0.00062 (0.422) |
0.756 (1.00) |
0.351 (1.00) |
0.134 (1.00) |
0.0402 (1.00) |
Del Peak 14(5q22 2) | 0 (0%) | 403 |
0.00106 (0.701) |
0.0314 (1.00) |
2.23e-09 (1.79e-06) |
0.158 (1.00) |
0.388 (1.00) |
0.922 (1.00) |
0.00168 (1.00) |
0.169 (1.00) |
0.771 (1.00) |
0.854 (1.00) |
0.0257 (1.00) |
0.00301 (1.00) |
Del Peak 20(8p11 21) | 0 (0%) | 451 |
0.0354 (1.00) |
0.122 (1.00) |
4.85e-07 (0.000377) |
0.171 (1.00) |
0.0853 (1.00) |
0.0903 (1.00) |
0.0621 (1.00) |
0.0497 (1.00) |
0.162 (1.00) |
0.4 (1.00) |
0.0851 (1.00) |
0.0182 (1.00) |
Del Peak 23(10p15 3) | 0 (0%) | 473 |
0.232 (1.00) |
0.169 (1.00) |
1.38e-07 (0.000108) |
0.0244 (1.00) |
0.023 (1.00) |
0.158 (1.00) |
0.0122 (1.00) |
0.0576 (1.00) |
0.71 (1.00) |
0.302 (1.00) |
0.0851 (1.00) |
0.063 (1.00) |
Del Peak 24(10q21 1) | 0 (0%) | 457 |
0.171 (1.00) |
0.12 (1.00) |
3.13e-11 (2.59e-08) |
0.139 (1.00) |
0.0871 (1.00) |
0.133 (1.00) |
0.0728 (1.00) |
0.0438 (1.00) |
0.691 (1.00) |
0.577 (1.00) |
0.138 (1.00) |
0.617 (1.00) |
Del Peak 25(10q23 31) | 0 (0%) | 430 |
0.136 (1.00) |
0.52 (1.00) |
9.09e-08 (7.13e-05) |
0.216 (1.00) |
0.033 (1.00) |
0.242 (1.00) |
0.00262 (1.00) |
0.0685 (1.00) |
0.762 (1.00) |
0.365 (1.00) |
0.00746 (1.00) |
0.0237 (1.00) |
Del Peak 28(12p13 1) | 0 (0%) | 498 |
0.00599 (1.00) |
0.0142 (1.00) |
3.89e-08 (3.08e-05) |
0.589 (1.00) |
0.977 (1.00) |
0.732 (1.00) |
0.0571 (1.00) |
0.423 (1.00) |
0.446 (1.00) |
0.919 (1.00) |
0.00788 (1.00) |
0.121 (1.00) |
Del Peak 29(12q21 2) | 0 (0%) | 495 |
0.137 (1.00) |
0.0294 (1.00) |
5.52e-07 (0.000427) |
0.327 (1.00) |
0.901 (1.00) |
0.546 (1.00) |
0.0351 (1.00) |
0.294 (1.00) |
0.521 (1.00) |
0.979 (1.00) |
0.0736 (1.00) |
0.0348 (1.00) |
Del Peak 43(19q13 43) | 0 (0%) | 507 |
0.72 (1.00) |
0.219 (1.00) |
0.00011 (0.0794) |
0.749 (1.00) |
0.0859 (1.00) |
0.937 (1.00) |
0.00935 (1.00) |
0.00916 (1.00) |
0.255 (1.00) |
0.502 (1.00) |
0.139 (1.00) |
0.106 (1.00) |
Del Peak 47(22q13 32) | 0 (0%) | 371 |
0.00476 (1.00) |
0.00578 (1.00) |
9.83e-15 (8.36e-12) |
0.047 (1.00) |
0.473 (1.00) |
0.617 (1.00) |
0.000824 (0.549) |
0.0349 (1.00) |
0.696 (1.00) |
0.0115 (1.00) |
0.000751 (0.503) |
0.00683 (1.00) |
Amp Peak 4(5q22 3) | 0 (0%) | 516 |
0.565 (1.00) |
0.887 (1.00) |
0.0037 (1.00) |
0.226 (1.00) |
0.676 (1.00) |
0.815 (1.00) |
0.248 (1.00) |
0.02 (1.00) |
0.46 (1.00) |
0.894 (1.00) |
0.193 (1.00) |
0.326 (1.00) |
Amp Peak 11(10q22 3) | 0 (0%) | 540 |
1 (1.00) |
0.182 (1.00) |
0.655 (1.00) |
0.561 (1.00) |
0.263 (1.00) |
0.85 (1.00) |
0.579 (1.00) |
0.187 (1.00) |
0.587 (1.00) |
0.281 (1.00) |
0.396 (1.00) |
0.433 (1.00) |
Amp Peak 13(12p13 32) | 0 (0%) | 431 |
0.556 (1.00) |
0.787 (1.00) |
0.252 (1.00) |
0.104 (1.00) |
0.768 (1.00) |
0.813 (1.00) |
0.205 (1.00) |
0.348 (1.00) |
0.676 (1.00) |
0.886 (1.00) |
0.727 (1.00) |
0.584 (1.00) |
Amp Peak 17(15q26 1) | 0 (0%) | 532 |
0.527 (1.00) |
0.0629 (1.00) |
0.249 (1.00) |
0.814 (1.00) |
0.105 (1.00) |
0.308 (1.00) |
0.191 (1.00) |
0.241 (1.00) |
0.926 (1.00) |
1 (1.00) |
0.473 (1.00) |
0.295 (1.00) |
Del Peak 4(2p12) | 0 (0%) | 555 |
1 (1.00) |
0.81 (1.00) |
0.00194 (1.00) |
0.011 (1.00) |
0.187 (1.00) |
1 (1.00) |
0.173 (1.00) |
0.738 (1.00) |
0.0165 (1.00) |
0.0215 (1.00) |
0.385 (1.00) |
0.321 (1.00) |
Del Peak 5(2q22 1) | 0 (0%) | 542 |
0.926 (1.00) |
0.311 (1.00) |
0.146 (1.00) |
0.832 (1.00) |
0.0998 (1.00) |
0.901 (1.00) |
0.974 (1.00) |
0.797 (1.00) |
0.316 (1.00) |
0.272 (1.00) |
0.936 (1.00) |
0.487 (1.00) |
Del Peak 6(2q37 2) | 0 (0%) | 545 |
0.911 (1.00) |
0.863 (1.00) |
0.285 (1.00) |
0.832 (1.00) |
0.278 (1.00) |
0.162 (1.00) |
0.56 (1.00) |
0.0948 (1.00) |
0.244 (1.00) |
0.364 (1.00) |
0.582 (1.00) |
0.903 (1.00) |
Del Peak 7(3p26 3) | 0 (0%) | 491 |
0.358 (1.00) |
0.753 (1.00) |
0.163 (1.00) |
0.365 (1.00) |
0.856 (1.00) |
0.824 (1.00) |
0.28 (1.00) |
0.0366 (1.00) |
0.277 (1.00) |
0.728 (1.00) |
0.0274 (1.00) |
0.128 (1.00) |
Del Peak 8(3p14 2) | 0 (0%) | 471 |
0.62 (1.00) |
0.991 (1.00) |
0.932 (1.00) |
0.461 (1.00) |
0.565 (1.00) |
0.674 (1.00) |
0.553 (1.00) |
0.663 (1.00) |
0.0595 (1.00) |
0.918 (1.00) |
0.0696 (1.00) |
0.434 (1.00) |
Del Peak 9(3q26 31) | 0 (0%) | 519 |
0.544 (1.00) |
0.788 (1.00) |
0.448 (1.00) |
0.363 (1.00) |
0.145 (1.00) |
0.51 (1.00) |
0.308 (1.00) |
0.0516 (1.00) |
0.0934 (1.00) |
0.123 (1.00) |
0.224 (1.00) |
0.0476 (1.00) |
Del Peak 15(6p25 3) | 0 (0%) | 497 |
0.907 (1.00) |
0.553 (1.00) |
0.0849 (1.00) |
0.257 (1.00) |
0.176 (1.00) |
0.94 (1.00) |
0.961 (1.00) |
0.385 (1.00) |
0.61 (1.00) |
0.957 (1.00) |
0.0351 (1.00) |
0.614 (1.00) |
Del Peak 16(6q26) | 0 (0%) | 485 |
0.777 (1.00) |
0.331 (1.00) |
0.0401 (1.00) |
0.779 (1.00) |
0.0542 (1.00) |
0.451 (1.00) |
0.919 (1.00) |
0.948 (1.00) |
0.223 (1.00) |
0.507 (1.00) |
0.478 (1.00) |
0.628 (1.00) |
Del Peak 17(7q31 1) | 0 (0%) | 560 |
0.292 (1.00) |
0.933 (1.00) |
1 (1.00) |
1 (1.00) |
0.589 (1.00) |
0.273 (1.00) |
0.66 (1.00) |
0.714 (1.00) |
0.235 (1.00) |
0.498 (1.00) |
0.361 (1.00) |
0.572 (1.00) |
Del Peak 21(8q11 1) | 0 (0%) | 531 |
0.58 (1.00) |
0.557 (1.00) |
0.00266 (1.00) |
0.632 (1.00) |
0.396 (1.00) |
0.568 (1.00) |
0.315 (1.00) |
0.32 (1.00) |
0.0819 (1.00) |
0.0193 (1.00) |
0.253 (1.00) |
0.472 (1.00) |
Del Peak 22(9p24 2) | 0 (0%) | 497 |
0.452 (1.00) |
0.299 (1.00) |
0.00178 (1.00) |
0.112 (1.00) |
0.532 (1.00) |
0.592 (1.00) |
0.0295 (1.00) |
0.00241 (1.00) |
0.296 (1.00) |
0.243 (1.00) |
0.0651 (1.00) |
0.0486 (1.00) |
Del Peak 27(11q22 3) | 0 (0%) | 471 |
0.478 (1.00) |
0.0658 (1.00) |
0.0385 (1.00) |
0.117 (1.00) |
0.437 (1.00) |
0.147 (1.00) |
0.0365 (1.00) |
0.524 (1.00) |
0.657 (1.00) |
0.363 (1.00) |
0.0914 (1.00) |
0.11 (1.00) |
Del Peak 34(16p13 3) | 0 (0%) | 517 |
0.139 (1.00) |
0.119 (1.00) |
0.215 (1.00) |
0.676 (1.00) |
0.669 (1.00) |
0.789 (1.00) |
0.927 (1.00) |
0.176 (1.00) |
0.637 (1.00) |
0.595 (1.00) |
0.901 (1.00) |
0.528 (1.00) |
Del Peak 35(16q23 1) | 0 (0%) | 503 |
0.0439 (1.00) |
0.00729 (1.00) |
0.179 (1.00) |
0.368 (1.00) |
0.18 (1.00) |
0.925 (1.00) |
0.271 (1.00) |
0.23 (1.00) |
0.805 (1.00) |
0.632 (1.00) |
0.715 (1.00) |
0.301 (1.00) |
Del Peak 37(17q24 3) | 0 (0%) | 491 |
1 (1.00) |
0.224 (1.00) |
0.0296 (1.00) |
0.528 (1.00) |
1 (1.00) |
0.523 (1.00) |
0.184 (1.00) |
0.0781 (1.00) |
0.919 (1.00) |
0.425 (1.00) |
0.227 (1.00) |
0.384 (1.00) |
P value = 0.000205 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 1(1Q31.1) CNV | 59 | 34 | 26 | 15 |
AMP PEAK 1(1Q31.1) WILD-TYPE | 141 | 200 | 74 | 26 |
P value = 0.000319 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 2(2Q33.1) CNV | 13 | 3 | 6 | 18 |
AMP PEAK 2(2Q33.1) WILD-TYPE | 29 | 47 | 57 | 42 |
P value = 1.52e-06 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 2(2Q33.1) CNV | 59 | 27 | 21 | 16 |
AMP PEAK 2(2Q33.1) WILD-TYPE | 141 | 207 | 79 | 25 |
P value = 0.000173 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 2(2Q33.1) CNV | 6 | 30 | 13 | 5 |
AMP PEAK 2(2Q33.1) WILD-TYPE | 32 | 51 | 43 | 61 |
P value = 0.000166 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
AMP PEAK 2(2Q33.1) CNV | 21 | 5 | 28 |
AMP PEAK 2(2Q33.1) WILD-TYPE | 74 | 62 | 51 |
P value = 6.55e-06 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 3(5P12) CNV | 51 | 21 | 24 | 11 |
AMP PEAK 3(5P12) WILD-TYPE | 149 | 213 | 76 | 30 |
P value = 3.97e-14 (Fisher's exact test), Q value = 3.4e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 5(6P21.1) CNV | 83 | 22 | 27 | 14 |
AMP PEAK 5(6P21.1) WILD-TYPE | 117 | 212 | 73 | 27 |
P value = 0.000139 (Chi-square test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 5(6P21.1) CNV | 11 | 8 | 21 | 24 | 15 | 3 |
AMP PEAK 5(6P21.1) WILD-TYPE | 19 | 15 | 41 | 41 | 31 | 66 |
P value = 7.91e-22 (Fisher's exact test), Q value = 6.9e-19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 6(7P21.3) CNV | 157 | 81 | 66 | 33 |
AMP PEAK 6(7P21.3) WILD-TYPE | 43 | 153 | 34 | 8 |
P value = 1.04e-06 (Fisher's exact test), Q value = 8e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
AMP PEAK 6(7P21.3) CNV | 113 | 58 | 50 |
AMP PEAK 6(7P21.3) WILD-TYPE | 29 | 56 | 41 |
P value = 6.87e-10 (Fisher's exact test), Q value = 5.6e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 6(7P21.3) CNV | 27 | 67 | 38 | 20 |
AMP PEAK 6(7P21.3) WILD-TYPE | 11 | 14 | 18 | 46 |
P value = 3.15e-06 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
AMP PEAK 6(7P21.3) CNV | 64 | 26 | 62 |
AMP PEAK 6(7P21.3) WILD-TYPE | 31 | 41 | 17 |
P value = 3.8e-11 (Chi-square test), Q value = 3.1e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 6(7P21.3) CNV | 18 | 17 | 44 | 51 | 38 | 18 |
AMP PEAK 6(7P21.3) WILD-TYPE | 12 | 6 | 18 | 14 | 8 | 51 |
P value = 2.83e-23 (Fisher's exact test), Q value = 2.5e-20
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 7(8P11.23) CNV | 56 | 44 | 76 | 20 |
AMP PEAK 7(8P11.23) WILD-TYPE | 144 | 190 | 24 | 21 |
P value = 3.33e-31 (Fisher's exact test), Q value = 3e-28
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 8(8P11.21) CNV | 75 | 51 | 89 | 23 |
AMP PEAK 8(8P11.21) WILD-TYPE | 125 | 183 | 11 | 18 |
P value = 1.91e-36 (Fisher's exact test), Q value = 1.7e-33
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 9(8Q12.1) CNV | 109 | 69 | 97 | 34 |
AMP PEAK 9(8Q12.1) WILD-TYPE | 91 | 165 | 3 | 7 |
P value = 0.000227 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 10(8Q24.21) CNV | 30 | 18 | 31 | 43 |
AMP PEAK 10(8Q24.21) WILD-TYPE | 12 | 32 | 32 | 17 |
P value = 3.18e-35 (Fisher's exact test), Q value = 2.8e-32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 10(8Q24.21) CNV | 129 | 82 | 99 | 35 |
AMP PEAK 10(8Q24.21) WILD-TYPE | 71 | 152 | 1 | 6 |
P value = 0.000294 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 10(8Q24.21) CNV | 20 | 65 | 31 | 33 |
AMP PEAK 10(8Q24.21) WILD-TYPE | 18 | 16 | 25 | 33 |
P value = 0.000202 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 12(11P15.5) CNV | 3 | 20 | 24 | 4 |
AMP PEAK 12(11P15.5) WILD-TYPE | 40 | 42 | 45 | 37 |
P value = 1.84e-06 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 12(11P15.5) CNV | 58 | 31 | 21 | 19 |
AMP PEAK 12(11P15.5) WILD-TYPE | 142 | 203 | 79 | 22 |
P value = 4.75e-05 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 12(11P15.5) CNV | 6 | 28 | 11 | 3 |
AMP PEAK 12(11P15.5) WILD-TYPE | 32 | 53 | 45 | 63 |
P value = 7.68e-06 (Fisher's exact test), Q value = 0.0058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
AMP PEAK 12(11P15.5) CNV | 17 | 3 | 28 |
AMP PEAK 12(11P15.5) WILD-TYPE | 78 | 64 | 51 |
P value = 2.77e-08 (Chi-square test), Q value = 2.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 12(11P15.5) CNV | 19 | 4 | 16 | 14 | 5 | 5 |
AMP PEAK 12(11P15.5) WILD-TYPE | 11 | 19 | 46 | 51 | 41 | 64 |
P value = 1.92e-07 (Fisher's exact test), Q value = 0.00015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 14(13Q12.13) CNV | 19 | 48 | 57 | 16 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 24 | 14 | 12 | 25 |
P value = 4.12e-06 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 14(13Q12.13) CNV | 36 | 36 | 25 | 43 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 6 | 14 | 38 | 17 |
P value = 6.42e-44 (Fisher's exact test), Q value = 5.8e-41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 14(13Q12.13) CNV | 194 | 86 | 66 | 25 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 6 | 148 | 34 | 16 |
P value = 1.67e-10 (Fisher's exact test), Q value = 1.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
AMP PEAK 14(13Q12.13) CNV | 121 | 56 | 50 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 21 | 58 | 41 |
P value = 8e-11 (Fisher's exact test), Q value = 6.6e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 14(13Q12.13) CNV | 29 | 67 | 37 | 19 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 9 | 14 | 19 | 47 |
P value = 4.97e-07 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
AMP PEAK 14(13Q12.13) CNV | 64 | 25 | 63 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 31 | 42 | 16 |
P value = 5.89e-09 (Fisher's exact test), Q value = 4.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
AMP PEAK 14(13Q12.13) CNV | 50 | 91 | 58 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 55 | 14 | 27 |
P value = 1.28e-12 (Chi-square test), Q value = 1.1e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 14(13Q12.13) CNV | 20 | 18 | 47 | 55 | 39 | 20 |
AMP PEAK 14(13Q12.13) WILD-TYPE | 10 | 5 | 15 | 10 | 7 | 49 |
P value = 4.65e-06 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 15(13Q12.2) CNV | 19 | 47 | 55 | 17 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 24 | 15 | 14 | 24 |
P value = 5.25e-05 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 15(13Q12.2) CNV | 35 | 35 | 26 | 42 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 7 | 15 | 37 | 18 |
P value = 2.2e-45 (Fisher's exact test), Q value = 2e-42
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 15(13Q12.2) CNV | 194 | 83 | 64 | 25 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 6 | 151 | 36 | 16 |
P value = 3.96e-11 (Fisher's exact test), Q value = 3.3e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
AMP PEAK 15(13Q12.2) CNV | 121 | 54 | 50 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 21 | 60 | 41 |
P value = 2.13e-10 (Fisher's exact test), Q value = 1.7e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 15(13Q12.2) CNV | 29 | 66 | 37 | 19 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 9 | 15 | 19 | 47 |
P value = 1.08e-06 (Fisher's exact test), Q value = 0.00083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
AMP PEAK 15(13Q12.2) CNV | 64 | 25 | 62 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 31 | 42 | 17 |
P value = 1.33e-07 (Fisher's exact test), Q value = 1e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
AMP PEAK 15(13Q12.2) CNV | 50 | 88 | 58 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 55 | 17 | 27 |
P value = 3.95e-12 (Chi-square test), Q value = 3.3e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 15(13Q12.2) CNV | 19 | 17 | 46 | 55 | 39 | 20 |
AMP PEAK 15(13Q12.2) WILD-TYPE | 11 | 6 | 16 | 10 | 7 | 49 |
P value = 9.73e-06 (Fisher's exact test), Q value = 0.0073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 16(13Q22.1) CNV | 19 | 47 | 54 | 17 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 24 | 15 | 15 | 24 |
P value = 0.000193 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 16(13Q22.1) CNV | 33 | 35 | 26 | 43 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 9 | 15 | 37 | 17 |
P value = 7.69e-42 (Fisher's exact test), Q value = 6.9e-39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 16(13Q22.1) CNV | 193 | 88 | 66 | 24 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 7 | 146 | 34 | 17 |
P value = 4.91e-09 (Fisher's exact test), Q value = 3.9e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
AMP PEAK 16(13Q22.1) CNV | 120 | 59 | 51 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 22 | 55 | 40 |
P value = 9.82e-10 (Fisher's exact test), Q value = 8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 16(13Q22.1) CNV | 30 | 69 | 35 | 23 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 8 | 12 | 21 | 43 |
P value = 5.36e-07 (Fisher's exact test), Q value = 0.00042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
AMP PEAK 16(13Q22.1) CNV | 65 | 27 | 65 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 30 | 40 | 14 |
P value = 8.54e-07 (Fisher's exact test), Q value = 0.00066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
AMP PEAK 16(13Q22.1) CNV | 53 | 88 | 61 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 52 | 17 | 24 |
P value = 1.26e-09 (Chi-square test), Q value = 1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 16(13Q22.1) CNV | 21 | 16 | 49 | 54 | 38 | 24 |
AMP PEAK 16(13Q22.1) WILD-TYPE | 9 | 7 | 13 | 11 | 8 | 45 |
P value = 1.33e-20 (Fisher's exact test), Q value = 1.2e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 18(16P11.2) CNV | 101 | 22 | 25 | 13 |
AMP PEAK 18(16P11.2) WILD-TYPE | 99 | 212 | 75 | 28 |
P value = 0.000181 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
AMP PEAK 18(16P11.2) CNV | 56 | 21 | 18 |
AMP PEAK 18(16P11.2) WILD-TYPE | 86 | 93 | 73 |
P value = 2.17e-05 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 18(16P11.2) CNV | 9 | 34 | 16 | 5 |
AMP PEAK 18(16P11.2) WILD-TYPE | 29 | 47 | 40 | 61 |
P value = 3.25e-05 (Chi-square test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 18(16P11.2) CNV | 10 | 7 | 20 | 28 | 16 | 3 |
AMP PEAK 18(16P11.2) WILD-TYPE | 20 | 16 | 42 | 37 | 30 | 66 |
P value = 3.46e-09 (Fisher's exact test), Q value = 2.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 19(17Q12) CNV | 69 | 27 | 36 | 12 |
AMP PEAK 19(17Q12) WILD-TYPE | 131 | 207 | 64 | 29 |
P value = 1.54e-08 (Fisher's exact test), Q value = 1.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 20(17Q24.1) CNV | 67 | 24 | 29 | 8 |
AMP PEAK 20(17Q24.1) WILD-TYPE | 133 | 210 | 71 | 33 |
P value = 0.000201 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 20(17Q24.1) CNV | 9 | 32 | 7 | 8 |
AMP PEAK 20(17Q24.1) WILD-TYPE | 29 | 49 | 49 | 58 |
P value = 8.87e-08 (Fisher's exact test), Q value = 7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 21(19P13.2) CNV | 54 | 16 | 17 | 10 |
AMP PEAK 21(19P13.2) WILD-TYPE | 146 | 218 | 83 | 31 |
P value = 0.000267 (Chi-square test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 21(19P13.2) CNV | 8 | 0 | 8 | 18 | 15 | 5 |
AMP PEAK 21(19P13.2) WILD-TYPE | 22 | 23 | 54 | 47 | 31 | 64 |
P value = 6.23e-08 (Fisher's exact test), Q value = 4.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 22(19Q12) CNV | 68 | 25 | 19 | 10 |
AMP PEAK 22(19Q12) WILD-TYPE | 132 | 209 | 81 | 31 |
P value = 5.56e-17 (Fisher's exact test), Q value = 4.8e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 23(20P11.23) CNV | 120 | 85 | 55 | 41 |
AMP PEAK 23(20P11.23) WILD-TYPE | 80 | 149 | 45 | 0 |
P value = 1.06e-05 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 23(20P11.23) CNV | 21 | 54 | 26 | 17 |
AMP PEAK 23(20P11.23) WILD-TYPE | 17 | 27 | 30 | 49 |
P value = 2.29e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
AMP PEAK 23(20P11.23) CNV | 49 | 18 | 51 |
AMP PEAK 23(20P11.23) WILD-TYPE | 46 | 49 | 28 |
P value = 2.07e-05 (Chi-square test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 23(20P11.23) CNV | 19 | 14 | 42 | 40 | 24 | 18 |
AMP PEAK 23(20P11.23) WILD-TYPE | 11 | 9 | 20 | 25 | 22 | 51 |
P value = 0.000231 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 24(20P11.21) CNV | 16 | 42 | 49 | 17 |
AMP PEAK 24(20P11.21) WILD-TYPE | 27 | 20 | 20 | 24 |
P value = 1.81e-05 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 24(20P11.21) CNV | 33 | 31 | 21 | 39 |
AMP PEAK 24(20P11.21) WILD-TYPE | 9 | 19 | 42 | 21 |
P value = 8.57e-23 (Fisher's exact test), Q value = 7.5e-20
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 24(20P11.21) CNV | 150 | 88 | 60 | 41 |
AMP PEAK 24(20P11.21) WILD-TYPE | 50 | 146 | 40 | 0 |
P value = 3.01e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
AMP PEAK 24(20P11.21) CNV | 105 | 56 | 46 |
AMP PEAK 24(20P11.21) WILD-TYPE | 37 | 58 | 45 |
P value = 4.83e-09 (Fisher's exact test), Q value = 3.9e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 24(20P11.21) CNV | 22 | 63 | 33 | 17 |
AMP PEAK 24(20P11.21) WILD-TYPE | 16 | 18 | 23 | 49 |
P value = 3.8e-09 (Fisher's exact test), Q value = 3.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
AMP PEAK 24(20P11.21) CNV | 56 | 18 | 61 |
AMP PEAK 24(20P11.21) WILD-TYPE | 39 | 49 | 18 |
P value = 0.000161 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
AMP PEAK 24(20P11.21) CNV | 47 | 76 | 55 |
AMP PEAK 24(20P11.21) WILD-TYPE | 58 | 29 | 30 |
P value = 2.14e-09 (Chi-square test), Q value = 1.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 24(20P11.21) CNV | 23 | 15 | 46 | 45 | 32 | 17 |
AMP PEAK 24(20P11.21) WILD-TYPE | 7 | 8 | 16 | 20 | 14 | 52 |
P value = 1.19e-13 (Fisher's exact test), Q value = 1e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 25(20Q11.21) CNV | 18 | 60 | 63 | 23 |
AMP PEAK 25(20Q11.21) WILD-TYPE | 25 | 2 | 6 | 18 |
P value = 9.59e-13 (Fisher's exact test), Q value = 8e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 25(20Q11.21) CNV | 39 | 43 | 26 | 56 |
AMP PEAK 25(20Q11.21) WILD-TYPE | 3 | 7 | 37 | 4 |
P value = 1.54e-42 (Fisher's exact test), Q value = 1.4e-39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 25(20Q11.21) CNV | 199 | 116 | 83 | 41 |
AMP PEAK 25(20Q11.21) WILD-TYPE | 1 | 118 | 17 | 0 |
P value = 3.39e-16 (Fisher's exact test), Q value = 2.9e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
AMP PEAK 25(20Q11.21) CNV | 138 | 66 | 62 |
AMP PEAK 25(20Q11.21) WILD-TYPE | 4 | 48 | 29 |
P value = 1.59e-19 (Fisher's exact test), Q value = 1.4e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 25(20Q11.21) CNV | 31 | 80 | 45 | 22 |
AMP PEAK 25(20Q11.21) WILD-TYPE | 7 | 1 | 11 | 44 |
P value = 5.25e-18 (Fisher's exact test), Q value = 4.5e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
AMP PEAK 25(20Q11.21) CNV | 75 | 25 | 78 |
AMP PEAK 25(20Q11.21) WILD-TYPE | 20 | 42 | 1 |
P value = 5.58e-10 (Fisher's exact test), Q value = 4.5e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
AMP PEAK 25(20Q11.21) CNV | 59 | 97 | 72 |
AMP PEAK 25(20Q11.21) WILD-TYPE | 46 | 8 | 13 |
P value = 6.02e-23 (Chi-square test), Q value = 5.3e-20
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 25(20Q11.21) CNV | 28 | 19 | 57 | 61 | 42 | 21 |
AMP PEAK 25(20Q11.21) WILD-TYPE | 2 | 4 | 5 | 4 | 4 | 48 |
P value = 1.06e-14 (Fisher's exact test), Q value = 9e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 26(20Q12) CNV | 17 | 60 | 63 | 22 |
AMP PEAK 26(20Q12) WILD-TYPE | 26 | 2 | 6 | 19 |
P value = 4.18e-14 (Fisher's exact test), Q value = 3.5e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 26(20Q12) CNV | 39 | 43 | 24 | 56 |
AMP PEAK 26(20Q12) WILD-TYPE | 3 | 7 | 39 | 4 |
P value = 5.84e-43 (Fisher's exact test), Q value = 5.2e-40
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 26(20Q12) CNV | 199 | 116 | 85 | 41 |
AMP PEAK 26(20Q12) WILD-TYPE | 1 | 118 | 15 | 0 |
P value = 5.9e-15 (Fisher's exact test), Q value = 5e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
AMP PEAK 26(20Q12) CNV | 138 | 69 | 63 |
AMP PEAK 26(20Q12) WILD-TYPE | 4 | 45 | 28 |
P value = 5.42e-19 (Fisher's exact test), Q value = 4.7e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 26(20Q12) CNV | 31 | 80 | 46 | 23 |
AMP PEAK 26(20Q12) WILD-TYPE | 7 | 1 | 10 | 43 |
P value = 1.81e-17 (Fisher's exact test), Q value = 1.6e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
AMP PEAK 26(20Q12) CNV | 76 | 26 | 78 |
AMP PEAK 26(20Q12) WILD-TYPE | 19 | 41 | 1 |
P value = 2.44e-11 (Fisher's exact test), Q value = 2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
AMP PEAK 26(20Q12) CNV | 59 | 99 | 73 |
AMP PEAK 26(20Q12) WILD-TYPE | 46 | 6 | 12 |
P value = 1.03e-24 (Chi-square test), Q value = 9.1e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 26(20Q12) CNV | 28 | 20 | 58 | 62 | 42 | 21 |
AMP PEAK 26(20Q12) WILD-TYPE | 2 | 3 | 4 | 3 | 4 | 48 |
P value = 7.8e-14 (Fisher's exact test), Q value = 6.6e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
AMP PEAK 27(20Q13.32) CNV | 18 | 60 | 64 | 24 |
AMP PEAK 27(20Q13.32) WILD-TYPE | 25 | 2 | 5 | 17 |
P value = 2.02e-12 (Fisher's exact test), Q value = 1.7e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
AMP PEAK 27(20Q13.32) CNV | 39 | 44 | 27 | 56 |
AMP PEAK 27(20Q13.32) WILD-TYPE | 3 | 6 | 36 | 4 |
P value = 5.66e-43 (Fisher's exact test), Q value = 5.1e-40
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 27(20Q13.32) CNV | 199 | 117 | 87 | 41 |
AMP PEAK 27(20Q13.32) WILD-TYPE | 1 | 117 | 13 | 0 |
P value = 6.32e-14 (Fisher's exact test), Q value = 5.3e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
AMP PEAK 27(20Q13.32) CNV | 137 | 69 | 63 |
AMP PEAK 27(20Q13.32) WILD-TYPE | 5 | 45 | 28 |
P value = 5.42e-19 (Fisher's exact test), Q value = 4.7e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
AMP PEAK 27(20Q13.32) CNV | 31 | 80 | 46 | 23 |
AMP PEAK 27(20Q13.32) WILD-TYPE | 7 | 1 | 10 | 43 |
P value = 1.81e-17 (Fisher's exact test), Q value = 1.6e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
AMP PEAK 27(20Q13.32) CNV | 76 | 26 | 78 |
AMP PEAK 27(20Q13.32) WILD-TYPE | 19 | 41 | 1 |
P value = 2.33e-10 (Fisher's exact test), Q value = 1.9e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
AMP PEAK 27(20Q13.32) CNV | 60 | 98 | 73 |
AMP PEAK 27(20Q13.32) WILD-TYPE | 45 | 7 | 12 |
P value = 3.52e-23 (Chi-square test), Q value = 3.1e-20
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
AMP PEAK 27(20Q13.32) CNV | 28 | 20 | 57 | 62 | 42 | 22 |
AMP PEAK 27(20Q13.32) WILD-TYPE | 2 | 3 | 5 | 3 | 4 | 47 |
P value = 1.72e-06 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
AMP PEAK 28(XQ28) CNV | 51 | 25 | 32 | 13 |
AMP PEAK 28(XQ28) WILD-TYPE | 149 | 209 | 68 | 28 |
P value = 0.000114 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 1(1P36.11) CNV | 14 | 36 | 34 | 7 |
DEL PEAK 1(1P36.11) WILD-TYPE | 29 | 26 | 35 | 34 |
P value = 2.21e-13 (Fisher's exact test), Q value = 1.9e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 1(1P36.11) CNV | 110 | 52 | 34 | 26 |
DEL PEAK 1(1P36.11) WILD-TYPE | 90 | 182 | 66 | 15 |
P value = 9.01e-05 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
DEL PEAK 1(1P36.11) CNV | 70 | 27 | 30 |
DEL PEAK 1(1P36.11) WILD-TYPE | 72 | 87 | 61 |
P value = 1.05e-05 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 1(1P36.11) CNV | 15 | 40 | 27 | 9 |
DEL PEAK 1(1P36.11) WILD-TYPE | 23 | 41 | 29 | 57 |
P value = 6.54e-05 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 1(1P36.11) CNV | 43 | 11 | 37 |
DEL PEAK 1(1P36.11) WILD-TYPE | 52 | 56 | 42 |
P value = 8.95e-13 (Fisher's exact test), Q value = 7.5e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 2(1P33) CNV | 83 | 37 | 14 | 22 |
DEL PEAK 2(1P33) WILD-TYPE | 117 | 197 | 86 | 19 |
P value = 3.38e-09 (Fisher's exact test), Q value = 2.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 3(1P13.2) CNV | 82 | 39 | 18 | 18 |
DEL PEAK 3(1P13.2) WILD-TYPE | 118 | 195 | 82 | 23 |
P value = 1.65e-12 (Fisher's exact test), Q value = 1.4e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 10(4P16.1) CNV | 92 | 40 | 26 | 24 |
DEL PEAK 10(4P16.1) WILD-TYPE | 108 | 194 | 74 | 17 |
P value = 1.32e-06 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 10(4P16.1) CNV | 15 | 28 | 27 | 5 |
DEL PEAK 10(4P16.1) WILD-TYPE | 23 | 53 | 29 | 61 |
P value = 0.000143 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 10(4P16.1) CNV | 38 | 8 | 29 |
DEL PEAK 10(4P16.1) WILD-TYPE | 57 | 59 | 50 |
P value = 0.000361 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 10(4P16.1) CNV | 17 | 40 | 32 |
DEL PEAK 10(4P16.1) WILD-TYPE | 88 | 65 | 53 |
P value = 1.25e-14 (Fisher's exact test), Q value = 1.1e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 11(4Q22.1) CNV | 101 | 43 | 28 | 26 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 99 | 191 | 72 | 15 |
P value = 6.99e-05 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
DEL PEAK 11(4Q22.1) CNV | 63 | 22 | 35 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 79 | 92 | 56 |
P value = 7.1e-06 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 11(4Q22.1) CNV | 16 | 33 | 27 | 7 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 22 | 48 | 29 | 59 |
P value = 0.00018 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 11(4Q22.1) CNV | 42 | 10 | 31 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 53 | 57 | 48 |
P value = 1.25e-13 (Fisher's exact test), Q value = 1e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 12(4Q35.1) CNV | 105 | 46 | 35 | 25 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 95 | 188 | 65 | 16 |
P value = 5.07e-05 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 12(4Q35.1) CNV | 17 | 37 | 28 | 10 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 21 | 44 | 28 | 56 |
P value = 3.74e-05 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 12(4Q35.1) CNV | 42 | 11 | 39 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 53 | 56 | 40 |
P value = 3.7e-05 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 12(4Q35.1) CNV | 22 | 53 | 32 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 83 | 52 | 53 |
P value = 2.13e-12 (Fisher's exact test), Q value = 1.8e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 13(5Q11.2) CNV | 69 | 23 | 27 | 21 |
DEL PEAK 13(5Q11.2) WILD-TYPE | 131 | 211 | 73 | 20 |
P value = 0.000317 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 13(5Q11.2) CNV | 11 | 26 | 16 | 4 |
DEL PEAK 13(5Q11.2) WILD-TYPE | 27 | 55 | 40 | 62 |
P value = 0.000128 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 13(5Q11.2) CNV | 11 | 34 | 26 |
DEL PEAK 13(5Q11.2) WILD-TYPE | 94 | 71 | 59 |
P value = 3.17e-05 (Chi-square test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 13(5Q11.2) CNV | 4 | 11 | 17 | 21 | 15 | 3 |
DEL PEAK 13(5Q11.2) WILD-TYPE | 26 | 12 | 45 | 44 | 31 | 66 |
P value = 2.23e-09 (Fisher's exact test), Q value = 1.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 14(5Q22.2) CNV | 80 | 38 | 32 | 22 |
DEL PEAK 14(5Q22.2) WILD-TYPE | 120 | 196 | 68 | 19 |
P value = 0.000258 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 18(8P23.2) CNV | 17 | 42 | 37 | 11 |
DEL PEAK 18(8P23.2) WILD-TYPE | 26 | 20 | 32 | 30 |
P value = 0.000146 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 18(8P23.2) CNV | 26 | 17 | 23 | 41 |
DEL PEAK 18(8P23.2) WILD-TYPE | 16 | 33 | 40 | 19 |
P value = 2.13e-34 (Fisher's exact test), Q value = 1.9e-31
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 18(8P23.2) CNV | 135 | 42 | 77 | 18 |
DEL PEAK 18(8P23.2) WILD-TYPE | 65 | 192 | 23 | 23 |
P value = 1.06e-06 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
DEL PEAK 18(8P23.2) CNV | 89 | 35 | 38 |
DEL PEAK 18(8P23.2) WILD-TYPE | 53 | 79 | 53 |
P value = 1.52e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 18(8P23.2) CNV | 20 | 48 | 30 | 14 |
DEL PEAK 18(8P23.2) WILD-TYPE | 18 | 33 | 26 | 52 |
P value = 3.49e-08 (Fisher's exact test), Q value = 2.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 18(8P23.2) CNV | 26 | 65 | 48 |
DEL PEAK 18(8P23.2) WILD-TYPE | 79 | 40 | 37 |
P value = 2.6e-06 (Chi-square test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 18(8P23.2) CNV | 18 | 14 | 28 | 36 | 30 | 13 |
DEL PEAK 18(8P23.2) WILD-TYPE | 12 | 9 | 34 | 29 | 16 | 56 |
P value = 1.58e-37 (Fisher's exact test), Q value = 1.4e-34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 19(8P22) CNV | 142 | 44 | 80 | 19 |
DEL PEAK 19(8P22) WILD-TYPE | 58 | 190 | 20 | 22 |
P value = 6.7e-07 (Fisher's exact test), Q value = 0.00052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
DEL PEAK 19(8P22) CNV | 94 | 39 | 39 |
DEL PEAK 19(8P22) WILD-TYPE | 48 | 75 | 52 |
P value = 1.05e-06 (Fisher's exact test), Q value = 0.00081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 19(8P22) CNV | 22 | 51 | 32 | 14 |
DEL PEAK 19(8P22) WILD-TYPE | 16 | 30 | 24 | 52 |
P value = 0.000223 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 19(8P22) CNV | 56 | 19 | 44 |
DEL PEAK 19(8P22) WILD-TYPE | 39 | 48 | 35 |
P value = 2.34e-06 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 19(8P22) CNV | 32 | 66 | 50 |
DEL PEAK 19(8P22) WILD-TYPE | 73 | 39 | 35 |
P value = 2.04e-06 (Chi-square test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 19(8P22) CNV | 18 | 15 | 30 | 38 | 32 | 15 |
DEL PEAK 19(8P22) WILD-TYPE | 12 | 8 | 32 | 27 | 14 | 54 |
P value = 4.85e-07 (Fisher's exact test), Q value = 0.00038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 20(8P11.21) CNV | 68 | 28 | 18 | 10 |
DEL PEAK 20(8P11.21) WILD-TYPE | 132 | 206 | 82 | 31 |
P value = 1.38e-07 (Fisher's exact test), Q value = 0.00011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 23(10P15.3) CNV | 41 | 21 | 21 | 19 |
DEL PEAK 23(10P15.3) WILD-TYPE | 159 | 213 | 79 | 22 |
P value = 3.13e-11 (Fisher's exact test), Q value = 2.6e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 24(10Q21.1) CNV | 49 | 20 | 27 | 22 |
DEL PEAK 24(10Q21.1) WILD-TYPE | 151 | 214 | 73 | 19 |
P value = 9.09e-08 (Fisher's exact test), Q value = 7.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 25(10Q23.31) CNV | 55 | 35 | 32 | 23 |
DEL PEAK 25(10Q23.31) WILD-TYPE | 145 | 199 | 68 | 18 |
P value = 3.06e-12 (Fisher's exact test), Q value = 2.6e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 26(10Q25.2) CNV | 56 | 30 | 26 | 28 |
DEL PEAK 26(10Q25.2) WILD-TYPE | 144 | 204 | 74 | 13 |
P value = 0.000239 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 26(10Q25.2) CNV | 11 | 26 | 17 | 4 |
DEL PEAK 26(10Q25.2) WILD-TYPE | 27 | 55 | 39 | 62 |
P value = 0.000324 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 26(10Q25.2) CNV | 28 | 5 | 25 |
DEL PEAK 26(10Q25.2) WILD-TYPE | 67 | 62 | 54 |
P value = 3.89e-08 (Fisher's exact test), Q value = 3.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 28(12P13.1) CNV | 44 | 10 | 13 | 10 |
DEL PEAK 28(12P13.1) WILD-TYPE | 156 | 224 | 87 | 31 |
P value = 5.52e-07 (Fisher's exact test), Q value = 0.00043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 29(12Q21.2) CNV | 45 | 13 | 12 | 10 |
DEL PEAK 29(12Q21.2) WILD-TYPE | 155 | 221 | 88 | 31 |
P value = 0.000117 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 30(14Q22.1) CNV | 22 | 19 | 9 | 26 |
DEL PEAK 30(14Q22.1) WILD-TYPE | 20 | 31 | 54 | 34 |
P value = 1.95e-28 (Fisher's exact test), Q value = 1.7e-25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 30(14Q22.1) CNV | 124 | 31 | 17 | 13 |
DEL PEAK 30(14Q22.1) WILD-TYPE | 76 | 203 | 83 | 28 |
P value = 2.54e-06 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
DEL PEAK 30(14Q22.1) CNV | 64 | 19 | 23 |
DEL PEAK 30(14Q22.1) WILD-TYPE | 78 | 95 | 68 |
P value = 0.000318 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 115 | 184 | 33 | 119 |
DEL PEAK 30(14Q22.1) CNV | 39 | 78 | 7 | 24 |
DEL PEAK 30(14Q22.1) WILD-TYPE | 76 | 106 | 26 | 95 |
P value = 4.09e-08 (Fisher's exact test), Q value = 3.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 30(14Q22.1) CNV | 14 | 40 | 16 | 4 |
DEL PEAK 30(14Q22.1) WILD-TYPE | 24 | 41 | 40 | 62 |
P value = 3.08e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 30(14Q22.1) CNV | 34 | 7 | 33 |
DEL PEAK 30(14Q22.1) WILD-TYPE | 61 | 60 | 46 |
P value = 3.91e-07 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 30(14Q22.1) CNV | 15 | 51 | 26 |
DEL PEAK 30(14Q22.1) WILD-TYPE | 90 | 54 | 59 |
P value = 7.68e-07 (Chi-square test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 30(14Q22.1) CNV | 14 | 9 | 25 | 28 | 14 | 2 |
DEL PEAK 30(14Q22.1) WILD-TYPE | 16 | 14 | 37 | 37 | 32 | 67 |
P value = 1.2e-23 (Fisher's exact test), Q value = 1.1e-20
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 31(15Q11.2) CNV | 122 | 41 | 40 | 30 |
DEL PEAK 31(15Q11.2) WILD-TYPE | 78 | 193 | 60 | 11 |
P value = 1.41e-06 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 31(15Q11.2) CNV | 16 | 45 | 24 | 9 |
DEL PEAK 31(15Q11.2) WILD-TYPE | 22 | 36 | 32 | 57 |
P value = 1.38e-05 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 31(15Q11.2) CNV | 42 | 11 | 41 |
DEL PEAK 31(15Q11.2) WILD-TYPE | 53 | 56 | 38 |
P value = 0.000233 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 31(15Q11.2) CNV | 27 | 55 | 38 |
DEL PEAK 31(15Q11.2) WILD-TYPE | 78 | 50 | 47 |
P value = 1.69e-05 (Chi-square test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 31(15Q11.2) CNV | 11 | 10 | 31 | 37 | 21 | 10 |
DEL PEAK 31(15Q11.2) WILD-TYPE | 19 | 13 | 31 | 28 | 25 | 59 |
P value = 2.43e-21 (Fisher's exact test), Q value = 2.1e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 32(15Q21.1) CNV | 117 | 41 | 40 | 29 |
DEL PEAK 32(15Q21.1) WILD-TYPE | 83 | 193 | 60 | 12 |
P value = 2.2e-07 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 32(15Q21.1) CNV | 16 | 44 | 21 | 7 |
DEL PEAK 32(15Q21.1) WILD-TYPE | 22 | 37 | 35 | 59 |
P value = 2.3e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 32(15Q21.1) CNV | 39 | 10 | 39 |
DEL PEAK 32(15Q21.1) WILD-TYPE | 56 | 57 | 40 |
P value = 0.000249 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 32(15Q21.1) CNV | 25 | 53 | 35 |
DEL PEAK 32(15Q21.1) WILD-TYPE | 80 | 52 | 50 |
P value = 6.46e-05 (Chi-square test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 32(15Q21.1) CNV | 11 | 10 | 29 | 34 | 20 | 9 |
DEL PEAK 32(15Q21.1) WILD-TYPE | 19 | 13 | 33 | 31 | 26 | 60 |
P value = 0.000199 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 33(15Q22.33) CNV | 12 | 31 | 34 | 6 |
DEL PEAK 33(15Q22.33) WILD-TYPE | 31 | 31 | 35 | 35 |
P value = 4.49e-23 (Fisher's exact test), Q value = 3.9e-20
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 33(15Q22.33) CNV | 113 | 35 | 40 | 29 |
DEL PEAK 33(15Q22.33) WILD-TYPE | 87 | 199 | 60 | 12 |
P value = 5.81e-09 (Fisher's exact test), Q value = 4.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 33(15Q22.33) CNV | 15 | 44 | 24 | 5 |
DEL PEAK 33(15Q22.33) WILD-TYPE | 23 | 37 | 32 | 61 |
P value = 5.5e-06 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 33(15Q22.33) CNV | 40 | 9 | 39 |
DEL PEAK 33(15Q22.33) WILD-TYPE | 55 | 58 | 40 |
P value = 1.14e-05 (Chi-square test), Q value = 0.0085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 33(15Q22.33) CNV | 12 | 8 | 28 | 36 | 19 | 8 |
DEL PEAK 33(15Q22.33) WILD-TYPE | 18 | 15 | 34 | 29 | 27 | 61 |
P value = 8.38e-08 (Fisher's exact test), Q value = 6.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 36(17P12) CNV | 16 | 50 | 51 | 15 |
DEL PEAK 36(17P12) WILD-TYPE | 27 | 12 | 18 | 26 |
P value = 2.2e-05 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 36(17P12) CNV | 33 | 30 | 24 | 45 |
DEL PEAK 36(17P12) WILD-TYPE | 9 | 20 | 39 | 15 |
P value = 2.01e-34 (Fisher's exact test), Q value = 1.8e-31
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 36(17P12) CNV | 169 | 69 | 75 | 30 |
DEL PEAK 36(17P12) WILD-TYPE | 31 | 165 | 25 | 11 |
P value = 4.41e-08 (Fisher's exact test), Q value = 3.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
DEL PEAK 36(17P12) CNV | 110 | 52 | 44 |
DEL PEAK 36(17P12) WILD-TYPE | 32 | 62 | 47 |
P value = 1.6e-08 (Fisher's exact test), Q value = 1.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 36(17P12) CNV | 26 | 60 | 35 | 17 |
DEL PEAK 36(17P12) WILD-TYPE | 12 | 21 | 21 | 49 |
P value = 3.32e-06 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 36(17P12) CNV | 58 | 22 | 58 |
DEL PEAK 36(17P12) WILD-TYPE | 37 | 45 | 21 |
P value = 1.88e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 36(17P12) CNV | 45 | 78 | 52 |
DEL PEAK 36(17P12) WILD-TYPE | 60 | 27 | 33 |
P value = 4.68e-11 (Chi-square test), Q value = 3.9e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 36(17P12) CNV | 22 | 17 | 43 | 47 | 32 | 14 |
DEL PEAK 36(17P12) WILD-TYPE | 8 | 6 | 19 | 18 | 14 | 55 |
P value = 5.8e-12 (Fisher's exact test), Q value = 4.8e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 38(18P11.31) CNV | 11 | 51 | 52 | 13 |
DEL PEAK 38(18P11.31) WILD-TYPE | 32 | 11 | 17 | 28 |
P value = 6.24e-10 (Fisher's exact test), Q value = 5.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 38(18P11.31) CNV | 35 | 29 | 17 | 46 |
DEL PEAK 38(18P11.31) WILD-TYPE | 7 | 21 | 46 | 14 |
P value = 1.19e-41 (Fisher's exact test), Q value = 1.1e-38
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 38(18P11.31) CNV | 176 | 65 | 64 | 36 |
DEL PEAK 38(18P11.31) WILD-TYPE | 24 | 169 | 36 | 5 |
P value = 1.08e-15 (Fisher's exact test), Q value = 9.3e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
DEL PEAK 38(18P11.31) CNV | 120 | 41 | 48 |
DEL PEAK 38(18P11.31) WILD-TYPE | 22 | 73 | 43 |
P value = 1.4e-20 (Fisher's exact test), Q value = 1.2e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 38(18P11.31) CNV | 23 | 71 | 36 | 8 |
DEL PEAK 38(18P11.31) WILD-TYPE | 15 | 10 | 20 | 58 |
P value = 5.08e-15 (Fisher's exact test), Q value = 4.3e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 38(18P11.31) CNV | 62 | 12 | 64 |
DEL PEAK 38(18P11.31) WILD-TYPE | 33 | 55 | 15 |
P value = 5.67e-12 (Fisher's exact test), Q value = 4.7e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 38(18P11.31) CNV | 36 | 86 | 54 |
DEL PEAK 38(18P11.31) WILD-TYPE | 69 | 19 | 31 |
P value = 1.75e-14 (Chi-square test), Q value = 1.5e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 38(18P11.31) CNV | 25 | 15 | 45 | 48 | 32 | 11 |
DEL PEAK 38(18P11.31) WILD-TYPE | 5 | 8 | 17 | 17 | 14 | 58 |
P value = 1.01e-09 (Fisher's exact test), Q value = 8.2e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 39(18Q12.2) CNV | 17 | 54 | 56 | 17 |
DEL PEAK 39(18Q12.2) WILD-TYPE | 26 | 8 | 13 | 24 |
P value = 4.59e-09 (Fisher's exact test), Q value = 3.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 39(18Q12.2) CNV | 37 | 32 | 24 | 51 |
DEL PEAK 39(18Q12.2) WILD-TYPE | 5 | 18 | 39 | 9 |
P value = 1.29e-49 (Fisher's exact test), Q value = 1.2e-46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 39(18Q12.2) CNV | 187 | 76 | 86 | 37 |
DEL PEAK 39(18Q12.2) WILD-TYPE | 13 | 158 | 14 | 4 |
P value = 1.67e-17 (Fisher's exact test), Q value = 1.4e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
DEL PEAK 39(18Q12.2) CNV | 131 | 52 | 52 |
DEL PEAK 39(18Q12.2) WILD-TYPE | 11 | 62 | 39 |
P value = 2.84e-19 (Fisher's exact test), Q value = 2.5e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 39(18Q12.2) CNV | 29 | 72 | 41 | 12 |
DEL PEAK 39(18Q12.2) WILD-TYPE | 9 | 9 | 15 | 54 |
P value = 1.22e-10 (Fisher's exact test), Q value = 1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 39(18Q12.2) CNV | 67 | 21 | 66 |
DEL PEAK 39(18Q12.2) WILD-TYPE | 28 | 46 | 13 |
P value = 9.43e-12 (Fisher's exact test), Q value = 7.8e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 39(18Q12.2) CNV | 47 | 94 | 59 |
DEL PEAK 39(18Q12.2) WILD-TYPE | 58 | 11 | 26 |
P value = 1.27e-18 (Chi-square test), Q value = 1.1e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 39(18Q12.2) CNV | 25 | 20 | 51 | 53 | 37 | 14 |
DEL PEAK 39(18Q12.2) WILD-TYPE | 5 | 3 | 11 | 12 | 9 | 55 |
P value = 3.72e-10 (Fisher's exact test), Q value = 3e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 40(18Q21.2) CNV | 17 | 55 | 57 | 18 |
DEL PEAK 40(18Q21.2) WILD-TYPE | 26 | 7 | 12 | 23 |
P value = 1.64e-08 (Fisher's exact test), Q value = 1.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 40(18Q21.2) CNV | 37 | 34 | 25 | 51 |
DEL PEAK 40(18Q21.2) WILD-TYPE | 5 | 16 | 38 | 9 |
P value = 1.24e-50 (Fisher's exact test), Q value = 1.1e-47
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 40(18Q21.2) CNV | 190 | 84 | 91 | 38 |
DEL PEAK 40(18Q21.2) WILD-TYPE | 10 | 150 | 9 | 3 |
P value = 5.25e-15 (Fisher's exact test), Q value = 4.5e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
DEL PEAK 40(18Q21.2) CNV | 133 | 62 | 54 |
DEL PEAK 40(18Q21.2) WILD-TYPE | 9 | 52 | 37 |
P value = 2.83e-15 (Fisher's exact test), Q value = 2.4e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 40(18Q21.2) CNV | 29 | 73 | 42 | 18 |
DEL PEAK 40(18Q21.2) WILD-TYPE | 9 | 8 | 14 | 48 |
P value = 1.42e-09 (Fisher's exact test), Q value = 1.2e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 40(18Q21.2) CNV | 69 | 25 | 68 |
DEL PEAK 40(18Q21.2) WILD-TYPE | 26 | 42 | 11 |
P value = 2.32e-11 (Fisher's exact test), Q value = 1.9e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 40(18Q21.2) CNV | 53 | 97 | 62 |
DEL PEAK 40(18Q21.2) WILD-TYPE | 52 | 8 | 23 |
P value = 2.83e-15 (Chi-square test), Q value = 2.4e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 40(18Q21.2) CNV | 26 | 19 | 55 | 53 | 38 | 21 |
DEL PEAK 40(18Q21.2) WILD-TYPE | 4 | 4 | 7 | 12 | 8 | 48 |
P value = 2.01e-09 (Fisher's exact test), Q value = 1.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 43 | 62 | 69 | 41 |
DEL PEAK 41(18Q22.1) CNV | 17 | 55 | 56 | 19 |
DEL PEAK 41(18Q22.1) WILD-TYPE | 26 | 7 | 13 | 22 |
P value = 1.23e-07 (Fisher's exact test), Q value = 9.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 50 | 63 | 60 |
DEL PEAK 41(18Q22.1) CNV | 37 | 32 | 27 | 51 |
DEL PEAK 41(18Q22.1) WILD-TYPE | 5 | 18 | 36 | 9 |
P value = 9.55e-53 (Fisher's exact test), Q value = 8.6e-50
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 41(18Q22.1) CNV | 190 | 80 | 89 | 39 |
DEL PEAK 41(18Q22.1) WILD-TYPE | 10 | 154 | 11 | 2 |
P value = 2.2e-15 (Fisher's exact test), Q value = 1.9e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
DEL PEAK 41(18Q22.1) CNV | 132 | 60 | 52 |
DEL PEAK 41(18Q22.1) WILD-TYPE | 10 | 54 | 39 |
P value = 2.83e-15 (Fisher's exact test), Q value = 2.4e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 81 | 56 | 66 |
DEL PEAK 41(18Q22.1) CNV | 29 | 73 | 42 | 18 |
DEL PEAK 41(18Q22.1) WILD-TYPE | 9 | 8 | 14 | 48 |
P value = 5.84e-09 (Fisher's exact test), Q value = 4.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 95 | 67 | 79 |
DEL PEAK 41(18Q22.1) CNV | 68 | 26 | 68 |
DEL PEAK 41(18Q22.1) WILD-TYPE | 27 | 41 | 11 |
P value = 4.12e-12 (Fisher's exact test), Q value = 3.4e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 41(18Q22.1) CNV | 51 | 97 | 60 |
DEL PEAK 41(18Q22.1) WILD-TYPE | 54 | 8 | 25 |
P value = 4.24e-15 (Chi-square test), Q value = 3.6e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 41(18Q22.1) CNV | 25 | 17 | 55 | 53 | 38 | 20 |
DEL PEAK 41(18Q22.1) WILD-TYPE | 5 | 6 | 7 | 12 | 8 | 49 |
P value = 1.35e-05 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 42(19P13.3) CNV | 44 | 17 | 21 | 10 |
DEL PEAK 42(19P13.3) WILD-TYPE | 156 | 217 | 79 | 31 |
P value = 0.000342 (Chi-square test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 30 | 23 | 62 | 65 | 46 | 69 |
DEL PEAK 42(19P13.3) CNV | 4 | 11 | 8 | 9 | 9 | 5 |
DEL PEAK 42(19P13.3) WILD-TYPE | 26 | 12 | 54 | 56 | 37 | 64 |
P value = 0.00011 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 43(19Q13.43) CNV | 28 | 13 | 16 | 11 |
DEL PEAK 43(19Q13.43) WILD-TYPE | 172 | 221 | 84 | 30 |
P value = 6.5e-15 (Fisher's exact test), Q value = 5.5e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 44(20P12.1) CNV | 96 | 46 | 37 | 0 |
DEL PEAK 44(20P12.1) WILD-TYPE | 104 | 188 | 63 | 41 |
P value = 8.89e-06 (Fisher's exact test), Q value = 0.0067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
DEL PEAK 44(20P12.1) CNV | 63 | 22 | 19 |
DEL PEAK 44(20P12.1) WILD-TYPE | 79 | 92 | 72 |
P value = 6.5e-15 (Fisher's exact test), Q value = 5.5e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 45(20P12.1) CNV | 96 | 46 | 37 | 0 |
DEL PEAK 45(20P12.1) WILD-TYPE | 104 | 188 | 63 | 41 |
P value = 8.89e-06 (Fisher's exact test), Q value = 0.0067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 114 | 91 |
DEL PEAK 45(20P12.1) CNV | 63 | 22 | 19 |
DEL PEAK 45(20P12.1) WILD-TYPE | 79 | 92 | 72 |
P value = 4.07e-09 (Fisher's exact test), Q value = 3.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 46(21Q11.2) CNV | 95 | 50 | 28 | 22 |
DEL PEAK 46(21Q11.2) WILD-TYPE | 105 | 184 | 72 | 19 |
P value = 0.000143 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 105 | 85 |
DEL PEAK 46(21Q11.2) CNV | 23 | 52 | 29 |
DEL PEAK 46(21Q11.2) WILD-TYPE | 82 | 53 | 56 |
P value = 9.83e-15 (Fisher's exact test), Q value = 8.4e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 200 | 234 | 100 | 41 |
DEL PEAK 47(22Q13.32) CNV | 108 | 45 | 28 | 23 |
DEL PEAK 47(22Q13.32) WILD-TYPE | 92 | 189 | 72 | 18 |
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Copy number data file = All Lesions File (all_lesions.conf_##.txt, where ## is the confidence level). The all lesions file is from GISTIC pipeline and summarizes the results from the GISTIC run. It contains data about the significant regions of amplification and deletion as well as which samples are amplified or deleted in each of these regions. The identified regions are listed down the first column, and the samples are listed across the first row, starting in column 10.
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Molecular subtype file = COADREAD-TP.transferedmergedcluster.txt
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Number of patients = 575
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Number of copy number variation regions = 75
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Number of molecular subtypes = 12
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Exclude regions that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
This is an experimental feature. The full results of the analysis summarized in this report can be downloaded from the TCGA Data Coordination Center.