Molecular subtypes	CN_CNMF		METHLYATION_CNMF	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	47	0.44898	1	0.59714	1
1q gain	0 (0%)	38	0.066596	1	1	1
2p gain	0 (0%)	39	0.005913	0.727	0.20129	1
2q gain	0 (0%)	43	0.021676	1	0.098915	1
3p gain	0 (0%)	44	0.067717	1	0.28999	1
3q gain	0 (0%)	31	2.7804e-05	0.00361	0.0032204	0.406
4p gain	0 (0%)	47	0.44898	1	0.79429	1
5p gain	0 (0%)	37	0.46074	1	0.31661	1
6p gain	0 (0%)	47	0.23898	1	1	1
7p gain	0 (0%)	26	0.08352	1	0.18792	1
7q gain	0 (0%)	35	0.24083	1	0.52774	1
8p gain	0 (0%)	35	0.24083	1	0.17826	1
8q gain	0 (0%)	26	0.55182	1	0.35954	1
9p gain	0 (0%)	47	0.23898	1	0.31673	1
9q gain	0 (0%)	44	0.21285	1	0.74322	1
10p gain	0 (0%)	44	0.86829	1	0.52657	1
10q gain	0 (0%)	47	0.011224	1	1	1
12p gain	0 (0%)	33	0.0013703	0.177	0.0094972	1
12q gain	0 (0%)	45	0.19081	1	0.28868	1
13q gain	0 (0%)	44	0.0031203	0.396	0.0036529	0.457
14q gain	0 (0%)	42	0.62818	1	0.16744	1
16p gain	0 (0%)	47	1	1	0.31673	1
17p gain	0 (0%)	43	0.38999	1	0.080049	1
17q gain	0 (0%)	43	1	1	0.57532	1
18p gain	0 (0%)	39	0.1522	1	0.33285	1
18q gain	0 (0%)	47	0.77959	1	1	1
19q gain	0 (0%)	43	0.01702	1	0.24227	1
20p gain	0 (0%)	31	0.93474	1	0.52618	1
20q gain	0 (0%)	27	0.41867	1	0.43889	1
21q gain	0 (0%)	47	0.23898	1	0.59714	1
22q gain	0 (0%)	43	0.88475	1	0.57532	1
Xq gain	0 (0%)	42	0.88564	1	0.10739	1
3p loss	0 (0%)	30	0.66083	1	0.3942	1
3q loss	0 (0%)	47	0.44898	1	0.79429	1
4p loss	0 (0%)	32	0.096124	1	0.050517	1
4q loss	0 (0%)	36	0.11513	1	0.021051	1
5p loss	0 (0%)	42	0.62818	1	0.24554	1
5q loss	0 (0%)	36	0.14947	1	0.025652	1
6p loss	0 (0%)	42	0.88564	1	0.36278	1
6q loss	0 (0%)	47	0.77959	1	0.59714	1
7p loss	0 (0%)	47	0.44898	1	0.59714	1
8p loss	0 (0%)	40	0.73879	1	0.65622	1
8q loss	0 (0%)	46	0.15914	1	0.038836	1
9p loss	0 (0%)	31	0.21294	1	0.23617	1
9q loss	0 (0%)	42	0.10101	1	0.16744	1
10p loss	0 (0%)	41	1	1	0.57252	1
10q loss	0 (0%)	39	0.061404	1	0.023701	1
11p loss	0 (0%)	39	0.19224	1	0.068059	1
11q loss	0 (0%)	36	0.0029724	0.38	0.033808	1
12p loss	0 (0%)	43	0.77299	1	0.50383	1
12q loss	0 (0%)	45	0.6126	1	0.22849	1
13q loss	0 (0%)	36	0.019336	1	0.028111	1
14q loss	0 (0%)	44	1	1	0.86091	1
15q loss	0 (0%)	41	0.80396	1	0.51385	1
16p loss	0 (0%)	42	0.085417	1	0.090846	1
16q loss	0 (0%)	41	0.006039	0.737	0.40823	1
17p loss	0 (0%)	40	0.66408	1	0.0055836	0.692
18p loss	0 (0%)	40	0.22812	1	0.19247	1
18q loss	0 (0%)	34	0.86089	1	0.12346	1
19p loss	0 (0%)	46	1	1	0.56182	1
19q loss	0 (0%)	47	0.77959	1	0.79429	1
20p loss	0 (0%)	45	0.71914	1	1	1
21q loss	0 (0%)	27	1	1	0.1279	1
22q loss	0 (0%)	44	0.54524	1	0.063628	1
Xq loss	0 (0%)	47	1	1	0.42816	1