Molecular subtypes	CN_CNMF		METHLYATION_CNMF	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p13.1)	0 (0%)	40	0.66408	1	0.48095	1
Amp Peak  2(1q25.2)	0 (0%)	27	0.040337	1	0.50758	1
Amp Peak  3(2q14.2)	0 (0%)	33	0.645	1	0.19539	1
Amp Peak  4(3q29)	0 (0%)	12	0.00057199	0.0601	0.0022305	0.232
Amp Peak  5(6p21.1)	0 (0%)	37	0.10077	1	1	1
Amp Peak  6(6q12)	0 (0%)	40	0.291	1	0.31381	1
Amp Peak  7(7p11.2)	0 (0%)	14	0.85198	1	0.18022	1
Amp Peak  8(7q21.3)	0 (0%)	15	0.1135	1	0.22743	1
Amp Peak  9(8p11.21)	0 (0%)	23	0.51503	1	0.756	1
Amp Peak 10(8q24.21)	0 (0%)	7	0.09909	1	0.1373	1
Amp Peak 11(10p11.21)	0 (0%)	35	0.62803	1	0.85185	1
Amp Peak 12(11p13)	0 (0%)	37	0.23271	1	1	1
Amp Peak 13(11q13.3)	0 (0%)	17	0.0001227	0.013	0.021872	1
Amp Peak 14(12p13.33)	0 (0%)	24	0.035814	1	0.031281	1
Amp Peak 15(12p12.1)	0 (0%)	22	0.066074	1	0.10374	1
Amp Peak 16(17q24.3)	0 (0%)	26	0.21235	1	0.20149	1
Amp Peak 17(18p11.32)	0 (0%)	32	0.38892	1	0.32739	1
Amp Peak 18(18q11.2)	0 (0%)	36	0.41008	1	0.044008	1
Amp Peak 19(19p13.2)	0 (0%)	38	0.28421	1	0.39409	1
Amp Peak 20(19q12)	0 (0%)	31	0.085883	1	0.13509	1
Amp Peak 21(Xp11.4)	0 (0%)	40	0.291	1	0.90059	1
Del Peak  1(1p35.2)	0 (0%)	35	1	1	0.85185	1
Del Peak  2(1q44)	0 (0%)	42	0.48523	1	0.40807	1
Del Peak  3(2q22.1)	0 (0%)	39	0.42629	1	0.61235	1
Del Peak  4(2q37.2)	0 (0%)	37	0.46074	1	0.13477	1
Del Peak  5(3p14.2)	0 (0%)	8	0.085417	1	0.2795	1
Del Peak  6(3q11.1)	0 (0%)	45	1	1	0.83951	1
Del Peak  7(3q26.31)	0 (0%)	46	0.15914	1	0.038836	1
Del Peak  8(4p15.2)	0 (0%)	21	0.29586	1	0.70905	1
Del Peak  9(4q22.1)	0 (0%)	29	0.58408	1	0.23934	1
Del Peak 10(5q11.2)	0 (0%)	20	0.44014	1	0.0027509	0.283
Del Peak 11(5q12.3)	0 (0%)	18	0.60829	1	0.0079049	0.783
Del Peak 12(6p25.3)	0 (0%)	30	0.87474	1	0.32089	1
Del Peak 13(6q26)	0 (0%)	36	0.56811	1	0.27721	1
Del Peak 14(7q31.1)	0 (0%)	33	0.35976	1	1	1
Del Peak 15(8p23.2)	0 (0%)	27	0.59339	1	0.8731	1
Del Peak 16(9p21.3)	0 (0%)	10	0.006197	0.626	0.035846	1
Del Peak 17(10p11.21)	0 (0%)	37	0.54897	1	0.06816	1
Del Peak 18(10q23.31)	0 (0%)	27	0.59339	1	0.24006	1
Del Peak 19(11p15.4)	0 (0%)	26	0.81793	1	0.35954	1
Del Peak 20(11q24.3)	0 (0%)	25	0.046497	1	0.82258	1
Del Peak 21(13q14.2)	0 (0%)	22	0.0064101	0.641	0.032145	1
Del Peak 22(15q13.1)	0 (0%)	36	0.61559	1	0.55454	1
Del Peak 23(16q23.1)	0 (0%)	33	0.0033649	0.343	0.11378	1
Del Peak 24(17q24.3)	0 (0%)	45	0.008623	0.845	0.22849	1
Del Peak 25(18q12.2)	0 (0%)	24	0.24548	1	0.17574	1
Del Peak 26(19q13.31)	0 (0%)	33	0.33289	1	0.064657	1
Del Peak 27(20p12.1)	0 (0%)	42	0.48523	1	0.40807	1
Del Peak 28(21q22.2)	0 (0%)	22	0.82137	1	0.81172	1
Del Peak 29(22q11.1)	0 (0%)	30	0.078727	1	0.061595	1
Del Peak 30(Xp21.1)	0 (0%)	26	0.63236	1	0.20149	1
Del Peak 31(Xp11.3)	0 (0%)	25	0.72457	1	1	1
Del Peak 32(Xq21.33)	0 (0%)	38	0.8388	1	0.91122	1