Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL	
	nMutated (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
EGFR	74 (26%)	210	0.0065319	0.66	0.002616	0.275	0.24234	1	0.21674	1	7.4856e-07	9.06e-05	0.005644	0.576	6.3736e-05	0.00746	1.463e-06	0.000176	0.041343	1	0.35695	1
PIK3R1	32 (11%)	252	0.42016	1	0.69124	1	0.46716	1	0.20455	1	0.11497	1	0.40691	1	0.98818	1	0.27286	1	0.40561	1	0.64893	1
BRAF	6 (2%)	278	0.70383	1	0.46453	1	0.61599	1	0.17539	1	0.58641	1	NA	NA	1	1	0.078076	1	0.79121	1	1	1
IDH1	14 (5%)	270	0.00014175	0.0164	2.2544e-07	2.75e-05	0.00022729	0.0259	1.2416e-05	0.00148	1.675e-05	0.00198	0.001511	0.166	0.0035226	0.363	0.020325	1	0.00071234	0.0798	0.0026329	0.275
TP53	79 (28%)	205	0.00081602	0.0906	0.0016265	0.176	0.00031308	0.0354	0.027184	1	0.0001659	0.0191	0.0083687	0.828	0.038377	1	0.0096772	0.948	0.0018446	0.196	0.037471	1
PTEN	87 (31%)	197	0.042407	1	0.73624	1	0.045214	1	0.59362	1	0.58358	1	0.91703	1	0.37848	1	0.38945	1	0.27044	1	0.19564	1
PIK3CA	30 (11%)	254	0.65177	1	0.20105	1	0.57127	1	0.78456	1	0.50102	1	0.91635	1	0.7545	1	0.28115	1	0.26203	1	0.83762	1
RB1	24 (8%)	260	0.028929	1	0.34742	1	0.065318	1	0.35679	1	0.087318	1	0.070948	1	0.4926	1	0.69117	1	0.081778	1	0.075359	1
PRB2	6 (2%)	278	0.71775	1	0.38204	1	0.44139	1	0.63399	1	0.77179	1	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
NF1	29 (10%)	255	0.064888	1	0.042809	1	0.089745	1	0.50067	1	0.0015432	0.168	0.0016722	0.179	0.22964	1	0.11973	1	0.56596	1	0.91494	1
CDC27	6 (2%)	278	0.1212	1	0.38204	1	0.26132	1	0.29017	1	0.44872	1	0.22659	1	0.27836	1	0.32478	1	NA	NA	NA	NA
STAG2	12 (4%)	272	0.80134	1	0.30061	1	0.21044	1	0.13216	1	0.75636	1	0.75207	1	0.0069359	0.694	0.18373	1	0.47875	1	0.77076	1
TPTE2	8 (3%)	276	0.4273	1	0.66516	1	0.31832	1	0.28932	1	0.27088	1	0.43781	1	0.62449	1	0.4088	1	0.37597	1	0.74053	1