Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nMutated (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
PBRM1	107 (37%)	186	0.02106	1	0.041465	1	0.00032562	0.0313	0.0012357	0.116	0.0073849	0.672	0.79905	1	0.00064883	0.0616	0.082154	1	0.045584	1	0.00014135	0.0139	0.087996	1	0.0081208	0.723
SV2C	3 (1%)	290	NA	NA	NA	NA	0.15704	1	0.010969	0.954	0.54009	1	0.78988	1	NA	NA	NA	NA	0.23553	1	0.019106	1	NA	NA	NA	NA
VHL	138 (47%)	155	0.030683	1	0.028235	1	0.61059	1	0.31367	1	0.88534	1	0.30693	1	0.0074407	0.672	0.065378	1	0.31058	1	0.15612	1	0.51727	1	0.65096	1
BAP1	27 (9%)	266	0.021229	1	0.025965	1	0.16588	1	0.0030936	0.285	0.025914	1	0.77442	1	0.0014463	0.135	3.7596e-08	3.8e-06	0.00019196	0.0186	9.9175e-07	9.92e-05	0.021705	1	0.026145	1
SETD2	34 (12%)	259	0.74671	1	0.77083	1	0.12387	1	2.6944e-05	0.00267	0.24918	1	0.20958	1	0.33838	1	0.65465	1	0.097824	1	0.46474	1	0.74395	1	0.42874	1
KDM5C	18 (6%)	275	NA	NA	NA	NA	0.59848	1	0.28496	1	0.70981	1	0.038794	1	0.10545	1	0.67143	1	0.051567	1	0.68399	1	0.75355	1	0.63287	1
TP53	6 (2%)	287	NA	NA	NA	NA	0.36058	1	0.53823	1	0.50558	1	0.42673	1	0.48126	1	0.24492	1	0.86753	1	0.078715	1	1	1	0.83604	1
PTEN	9 (3%)	284	0.16278	1	0.118	1	0.62479	1	0.32143	1	0.086928	1	0.6061	1	0.0083516	0.735	0.043716	1	0.41236	1	0.66099	1	NA	NA	NA	NA
EBPL	6 (2%)	287	NA	NA	NA	NA	0.23408	1	0.79502	1	0.47658	1	0.41397	1	0.31771	1	0.17419	1	0.20047	1	0.3133	1	0.6737	1	0.67334	1
TOR1A	3 (1%)	290	NA	NA	NA	NA	1	1	NA	NA	0.82813	1	0.22532	1	0.56286	1	1	1	0.80039	1	1	1	NA	NA	NA	NA