Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak 1(2q32.1)	0 (0%)	104	0.00086702	0.2	0.09742	1	0.94171	1	1	1	0.31656	1	0.71896	1	0.31768	1	0.13022	1
Amp Peak 2(3p14.1)	0 (0%)	95	4.1886e-15	1.1e-12	0.029355	1	0.0027933	0.615	1.7896e-06	0.000451	0.0041909	0.905	1.6873e-07	4.3e-05	0.32662	1	0.004811	1
Amp Peak 3(3q26.31)	0 (0%)	85	1.3263e-10	3.42e-08	0.15522	1	0.031304	1	0.0011393	0.261	0.039002	1	9.1926e-05	0.0222	0.49115	1	0.040603	1
Amp Peak 4(5q35.2)	0 (0%)	108	1.7967e-13	4.69e-11	0.026737	1	0.67759	1	0.05646	1	0.25685	1	0.1827	1	0.041307	1	0.34466	1
Amp Peak 5(6p12.3)	0 (0%)	123	0.06343	1	0.13651	1	0.11386	1	0.34956	1	0.28226	1	0.45675	1	0.37864	1	0.51614	1
Amp Peak 6(7q22.1)	0 (0%)	56	9.6781e-07	0.000245	6.1516e-05	0.0151	0.0017198	0.389	0.00051467	0.121	0.031215	1	0.0063041	1	0.1379	1	0.025241	1
Amp Peak 7(17q25.2)	0 (0%)	40	0.001119	0.257	0.094912	1	0.27993	1	0.038824	1	0.41724	1	0.30363	1	0.37537	1	0.96125	1
Amp Peak 8(19p13.2)	0 (0%)	113	3.6475e-08	9.34e-06	0.13248	1	0.068314	1	0.7651	1	0.93783	1	0.44413	1	0.70428	1	0.66708	1
Amp Peak 9(19q13.11)	0 (0%)	123	0.92728	1	0.13651	1	0.20127	1	0.13	1	0.41489	1	0.45675	1	0.45488	1	0.25045	1
Del Peak  1(1p36.31)	0 (0%)	100	3.0932e-07	7.86e-05	0.0089957	1	0.072513	1	0.086115	1	0.18279	1	0.22716	1	0.21343	1	0.089564	1
Del Peak  2(2p11.2)	0 (0%)	124	0.6135	1	0.80001	1	NA	NA	NA	NA	0.024042	1	0.035999	1	0.055294	1	0.027951	1
Del Peak  3(2q37.3)	0 (0%)	122	0.95857	1	0.13911	1	0.68433	1	0.34956	1	0.61151	1	0.91288	1	0.37172	1	0.053919	1
Del Peak  4(3p22.1)	0 (0%)	117	0.00043666	0.104	8.3975e-05	0.0203	0.020585	1	0.0041726	0.905	0.0070925	1	0.0094841	1	0.13059	1	6.3461e-05	0.0155
Del Peak  5(4q33)	0 (0%)	111	0.00073553	0.171	0.00016756	0.04	0.0021674	0.483	0.016181	1	0.22718	1	0.47428	1	0.49435	1	0.048659	1
Del Peak  6(5p15.2)	0 (0%)	120	0.0064206	1	0.036236	1	0.039455	1	0.017003	1	0.22132	1	0.21778	1	0.28879	1	0.3596	1
Del Peak  7(5q15)	0 (0%)	117	2.0738e-05	0.00516	0.052987	1	0.01289	1	0.050649	1	0.78291	1	0.20568	1	0.77175	1	0.66708	1
Del Peak  8(5q35.2)	0 (0%)	118	0.00016487	0.0396	0.0015654	0.355	0.00061566	0.145	0.0011561	0.264	0.23253	1	0.1552	1	0.4235	1	0.12818	1
Del Peak  9(6p12.3)	0 (0%)	115	6.3507e-05	0.0155	0.026295	1	0.69687	1	0.67547	1	0.63907	1	0.8894	1	1	1	0.9112	1
Del Peak 10(6q22.31)	0 (0%)	113	0.0055541	1	0.021153	1	0.097644	1	0.17478	1	0.16637	1	0.4786	1	0.93339	1	0.081313	1
Del Peak 11(6q26)	0 (0%)	112	7.2331e-05	0.0176	0.0030322	0.664	0.3993	1	0.30323	1	0.53685	1	0.50694	1	0.6319	1	0.19248	1
Del Peak 12(9p21.3)	0 (0%)	108	0.00047584	0.113	1.1834e-05	0.00296	3.4017e-05	0.0084	0.0018215	0.41	0.030197	1	0.095883	1	0.38631	1	0.0020229	0.453
Del Peak 13(10p15.3)	0 (0%)	119	0.060933	1	0.011094	1	0.43544	1	0.2325	1	0.0068926	1	0.58062	1	0.52721	1	0.19697	1
Del Peak 14(11q22.3)	0 (0%)	113	0.0084777	1	0.0025679	0.57	0.077193	1	0.011421	1	0.10851	1	0.66464	1	0.49435	1	0.51323	1
Del Peak 16(14q11.2)	0 (0%)	98	1.8587e-10	4.78e-08	0.27631	1	0.093411	1	0.17671	1	0.82551	1	0.79038	1	1	1	0.32397	1
Del Peak 17(14q23.3)	0 (0%)	99	6.818e-13	1.77e-10	0.122	1	0.035121	1	0.029534	1	0.85541	1	0.74215	1	0.95753	1	0.32397	1
Del Peak 18(14q32.2)	0 (0%)	99	6.4772e-13	1.68e-10	0.22958	1	0.077507	1	0.064804	1	0.85541	1	0.74215	1	0.95753	1	0.44212	1
Del Peak 19(15q14)	0 (0%)	111	0.0050611	1	0.0084924	1	0.11235	1	0.30061	1	0.1294	1	0.52008	1	0.36888	1	0.089631	1
Del Peak 20(19p13.3)	0 (0%)	114	0.0072874	1	0.23138	1	0.43015	1	0.087115	1	0.97641	1	0.80079	1	0.21735	1	0.70251	1
Del Peak 21(19q13.2)	0 (0%)	116	0.17893	1	0.13599	1	0.73212	1	0.049279	1	0.16597	1	0.80537	1	0.3755	1	0.51588	1
Del Peak 22(19q13.42)	0 (0%)	115	0.18623	1	0.29973	1	0.73212	1	0.2325	1	0.82031	1	0.94028	1	0.86251	1	0.49264	1
Del Peak 23(22q12.2)	0 (0%)	93	0.00069367	0.162	0.00075568	0.175	0.5186	1	0.031387	1	0.019416	1	0.032172	1	0.12426	1	0.0073079	1
Del Peak 24(Xq21.31)	0 (0%)	109	7.1716e-06	0.0018	0.0034081	0.743	0.0027815	0.615	0.035429	1	0.20825	1	0.89901	1	0.32481	1	0.22766	1
Del Peak 25(Xq28)	0 (0%)	110	2.9258e-05	0.00726	0.060811	1	0.043626	1	0.25271	1	0.31652	1	0.84447	1	0.68781	1	0.75331	1