Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak 1(1p33)	0 (0%)	184	4.8597e-07	5.2e-05	0.0051592	0.413	0.12442	1	0.6648	1	0.0098865	0.682	0.23022	1
Amp Peak 2(1q43)	0 (0%)	184	0.0063038	0.473	0.0051592	0.413	0.37343	1	0.42513	1	0.13739	1	0.12057	1
Amp Peak 3(11q23.3)	0 (0%)	174	4.8679e-33	5.7e-31	8.507e-05	0.00851	0.37347	1	0.78378	1	0.74626	1	0.94473	1
Amp Peak 4(13q31.3)	0 (0%)	184	1.9608e-10	2.2e-08	0.0051592	0.413	0.066765	1	0.096536	1	0.73534	1	0.14258	1
Amp Peak 5(20q11.21)	0 (0%)	188	0.0013537	0.123	0.18478	1	NA	NA	0.5502	1	NA	NA	NA	NA
Amp Peak 6(21q22.2)	0 (0%)	177	9.345e-32	1.08e-29	0.0015608	0.14	0.0033604	0.276	0.337	1	0.0017736	0.155	0.017269	1
Del Peak  2(3p13)	0 (0%)	182	0.0017946	0.155	0.13708	1	0.034901	1	0.71843	1	0.012027	0.806	0.0016557	0.147
Del Peak  3(3q26.31)	0 (0%)	188	0.0035451	0.287	0.18478	1	0.78607	1	1	1	0.061789	1	0.04811	1
Del Peak  4(5q31.2)	0 (0%)	173	6.3189e-15	7.27e-13	6.1088e-05	0.00623	0.0052964	0.413	0.092271	1	0.0008094	0.0769	0.00041968	0.0407
Del Peak  5(7p12.1)	0 (0%)	175	2.3961e-07	2.64e-05	0.00066655	0.064	0.0017898	0.155	0.0027164	0.225	0.0059501	0.452	0.0017582	0.155
Del Peak  6(7q32.3)	0 (0%)	168	8.7837e-07	9.31e-05	0.00018948	0.0186	0.038361	1	0.021985	1	0.0025494	0.214	9.872e-05	0.00977
Del Peak  7(7q34)	0 (0%)	167	2.8339e-06	0.000298	7.4042e-05	0.00748	0.022081	1	0.021247	1	0.00083583	0.0786	1.5481e-05	0.00161
Del Peak  9(9q21.32)	0 (0%)	186	0.63001	1	0.41572	1	0.17604	1	0.66376	1	0.18263	1	0.10759	1
Del Peak 10(12p13.2)	0 (0%)	181	8.2523e-13	9.33e-11	0.007759	0.566	0.19716	1	0.16676	1	0.068249	1	0.021665	1
Del Peak 11(12q21.33)	0 (0%)	188	0.056989	1	0.38025	1	0.18603	1	0.55157	1	0.0082666	0.595	0.0069633	0.515
Del Peak 12(16q23.1)	0 (0%)	182	2.6066e-07	2.84e-05	0.064782	1	0.33199	1	1	1	0.044236	1	0.049262	1
Del Peak 13(17p13.2)	0 (0%)	176	1.6751e-14	1.91e-12	0.0010543	0.0981	0.011251	0.765	0.021068	1	0.087417	1	0.0013327	0.123
Del Peak 14(17q11.2)	0 (0%)	178	1.7212e-05	0.00177	0.028967	1	0.15585	1	0.22244	1	0.13635	1	0.0083821	0.595
Del Peak 15(18p11.21)	0 (0%)	182	4.6285e-07	5e-05	0.0083162	0.595	0.38067	1	0.71843	1	0.21278	1	0.091424	1
Del Peak 16(20q13.13)	0 (0%)	187	9.7264e-10	1.08e-07	0.080833	1	0.78607	1	1	1	0.12454	1	0.22204	1