Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	214	NA	NA	NA	NA	0.02718	1	0.087771	1	3.3857e-05	0.0136	0.10269	1	0.39141	1	0.11409	1	0.15452	1	0.74675	1
1q gain	0 (0%)	212	NA	NA	NA	NA	0.0012629	0.467	0.089587	1	0.031166	1	0.61823	1	0.91837	1	0.36753	1	0.56302	1	1	1
6p gain	0 (0%)	216	NA	NA	NA	NA	0.21329	1	0.3099	1	0.051665	1	0.27942	1	0.15749	1	0.68059	1	0.23151	1	0.6738	1
7p gain	0 (0%)	183	0.17504	1	0.65299	1	1.8578e-17	8.06e-15	5.2955e-11	2.26e-08	8.1656e-12	3.49e-09	0.00020377	0.0793	1.9335e-05	0.00783	0.0022113	0.796	0.00043502	0.167	0.00026319	0.102
7q gain	0 (0%)	169	0.28205	1	0.38205	1	6.782e-15	2.92e-12	1.2204e-09	5.2e-07	6.5645e-08	2.78e-05	0.0013934	0.511	0.00011221	0.0442	0.058623	1	0.0011593	0.431	0.011282	1
8p gain	0 (0%)	206	NA	NA	NA	NA	0.033689	1	0.22869	1	0.60632	1	0.46405	1	0.046092	1	0.37205	1	0.4526	1	0.41135	1
8q gain	0 (0%)	203	NA	NA	NA	NA	0.0046726	1	0.061083	1	0.37723	1	0.20267	1	0.060566	1	0.33887	1	0.53741	1	0.31541	1
9p gain	0 (0%)	216	NA	NA	NA	NA	0.21329	1	0.63461	1	0.071471	1	1	1	1	1	0.11899	1	0.79128	1	0.41283	1
9q gain	0 (0%)	214	NA	NA	NA	NA	0.02718	1	0.24414	1	0.0023081	0.826	0.51885	1	0.79353	1	0.27605	1	0.4372	1	0.14964	1
10p gain	0 (0%)	199	NA	NA	NA	NA	6.4093e-07	0.000269	1.1343e-05	0.00466	0.017501	1	0.094034	1	0.87316	1	0.92119	1	0.26505	1	1	1
11p gain	0 (0%)	211	NA	NA	NA	NA	0.50028	1	0.14673	1	0.0039457	1	0.0026055	0.922	0.17902	1	0.42424	1	0.77204	1	0.64101	1
11q gain	0 (0%)	206	NA	NA	NA	NA	0.35309	1	0.29913	1	0.1716	1	0.10729	1	0.75927	1	0.37205	1	0.71021	1	0.73868	1
12p gain	0 (0%)	209	NA	NA	NA	NA	0.036807	1	0.11201	1	0.28595	1	0.17029	1	0.09939	1	0.041991	1	0.40507	1	0.036261	1
12q gain	0 (0%)	215	NA	NA	NA	NA	0.84818	1	0.66239	1	0.93405	1	0.34627	1	0.053288	1	0.11822	1	0.34621	1	0.11089	1
18p gain	0 (0%)	216	NA	NA	NA	NA	0.21329	1	0.63461	1	0.56941	1	0.27942	1	0.46908	1	0.17335	1	0.47886	1	1	1
19p gain	0 (0%)	209	NA	NA	NA	NA	2.2549e-05	0.00911	4.8397e-05	0.0194	0.0012203	0.453	0.010239	1	0.021778	1	0.017671	1	0.26408	1	0.0070369	1
19q gain	0 (0%)	211	NA	NA	NA	NA	0.0003397	0.131	0.00053939	0.206	0.00033593	0.13	0.021732	1	0.042199	1	0.10415	1	0.27791	1	0.054553	1
20p gain	0 (0%)	203	NA	NA	NA	NA	1.6641e-05	0.00681	0.00012659	0.0498	1.7004e-05	0.00694	0.25858	1	0.012308	1	0.16152	1	0.55361	1	0.037805	1
20q gain	0 (0%)	204	NA	NA	NA	NA	8.0385e-05	0.0321	4.2754e-05	0.0172	7.3458e-08	3.1e-05	0.025208	1	0.00083273	0.316	0.019766	1	0.3138	1	0.0049309	1
21q gain	0 (0%)	217	NA	NA	NA	NA	0.3283	1	0.4433	1	0.15818	1	0.08785	1	1	1	1	1	0.086411	1	1	1
1p loss	0 (0%)	153	0.0036069	1	8.7479e-06	0.0036	4.5646e-47	2.03e-44	6.3707e-49	2.84e-46	1.6058e-24	7.07e-22	1.3739e-30	6.07e-28	3.3002e-14	1.42e-11	5.6721e-07	0.000238	9.5418e-07	0.000398	9.6622e-09	4.1e-06
1q loss	0 (0%)	211	0.088889	1	0.020171	1	8.3814e-05	0.0333	1.903e-05	0.00775	0.0060313	1	0.00013044	0.0511	0.0069383	1	0.50573	1	0.0017456	0.635	0.12253	1
2p loss	0 (0%)	216	NA	NA	NA	NA	0.8251	1	1	1	0.46401	1	0.37036	1	0.33942	1	0.040403	1	0.28507	1	0.6738	1
2q loss	0 (0%)	217	NA	NA	NA	NA	0.79595	1	1	1	0.51312	1	0.25944	1	0.025765	1	1	1	0.064898	1	1	1
3p loss	0 (0%)	216	NA	NA	NA	NA	0.55287	1	0.63461	1	0.35637	1	0.27942	1	0.19951	1	0.68059	1	0.23151	1	0.6738	1
3q loss	0 (0%)	211	0.17504	1	0.56068	1	0.12771	1	0.16391	1	0.54707	1	0.45331	1	0.86898	1	1	1	0.69802	1	1	1
4p loss	0 (0%)	205	0.41538	1	0.090655	1	0.00088221	0.333	6.8744e-05	0.0275	0.00010751	0.0425	0.00041817	0.161	1.4112e-05	0.00579	0.39678	1	8.0498e-05	0.0321	0.069722	1
4q loss	0 (0%)	196	0.83946	1	0.40412	1	0.0048973	1	0.00016847	0.0657	0.0019954	0.721	0.0035527	1	1.1591e-06	0.000481	0.058901	1	0.0001361	0.0532	0.03107	1
5p loss	0 (0%)	209	1	1	0.013836	1	0.016243	1	0.019721	1	0.84671	1	0.35957	1	0.037875	1	0.34882	1	0.59622	1	0.68825	1
5q loss	0 (0%)	211	0.61538	1	0.0013675	0.503	0.04528	1	0.067149	1	0.043898	1	0.021732	1	0.0024431	0.867	0.17062	1	0.012815	1	0.64101	1
6p loss	0 (0%)	213	NA	NA	NA	NA	0.12011	1	0.02638	1	0.13906	1	1	1	0.50131	1	0.10629	1	0.88603	1	0.011148	1
6q loss	0 (0%)	199	NA	NA	NA	NA	0.0043112	1	0.02317	1	0.36237	1	0.33233	1	0.20636	1	0.33665	1	0.04796	1	0.079739	1
8p loss	0 (0%)	217	NA	NA	NA	NA	0.17032	1	0.2156	1	0.57083	1	1	1	0.025765	1	1	1	0.75303	1	1	1
9p loss	0 (0%)	182	0.38387	1	0.26997	1	0.0028858	1	0.12495	1	0.69245	1	0.24542	1	0.67173	1	0.94714	1	0.49237	1	0.60868	1
9q loss	0 (0%)	214	NA	NA	NA	NA	0.070248	1	0.034167	1	0.011059	1	0.00088239	0.333	0.0049825	1	0.53109	1	0.29813	1	0.19922	1
10p loss	0 (0%)	189	0.27077	1	0.56068	1	2.3011e-17	9.96e-15	1.1941e-22	5.24e-20	4.7878e-19	2.08e-16	0.0016029	0.587	0.011117	1	0.0017187	0.627	9.8775e-07	0.000411	0.00040868	0.157
10q loss	0 (0%)	188	0.27077	1	0.56068	1	3.463e-16	1.5e-13	1.779e-21	7.77e-19	3.8132e-20	1.66e-17	0.0010942	0.41	0.0079335	1	0.004675	1	1.8559e-06	0.000768	0.0011146	0.416
11p loss	0 (0%)	200	0.81538	1	0.10604	1	0.0019931	0.721	0.00087611	0.332	0.016205	1	0.0089692	1	0.0057898	1	0.35869	1	0.044464	1	0.53852	1
11q loss	0 (0%)	216	NA	NA	NA	NA	0.0024251	0.863	0.23325	1	0.001869	0.678	0.27942	1	0.63288	1	0.040403	1	0.50693	1	0.6738	1
12q loss	0 (0%)	212	NA	NA	NA	NA	0.044397	1	0.19176	1	0.68631	1	0.61823	1	0.11591	1	1	1	0.093171	1	0.59498	1
13q loss	0 (0%)	192	1	1	0.013836	1	0.63483	1	0.092168	1	0.85974	1	0.53653	1	0.72171	1	0.61679	1	0.36012	1	0.59234	1
14q loss	0 (0%)	196	NA	NA	NA	NA	0.0011119	0.416	0.00049442	0.189	0.0012643	0.467	0.45188	1	0.069627	1	0.11242	1	0.0080033	1	0.43986	1
15q loss	0 (0%)	208	NA	NA	NA	NA	0.0058203	1	0.0022433	0.805	0.00097692	0.367	0.0050375	1	0.49745	1	1	1	0.9128	1	0.84756	1
16q loss	0 (0%)	214	NA	NA	NA	NA	0.66175	1	0.087771	1	0.30188	1	0.51885	1	0.7132	1	0.75467	1	0.36729	1	0.74675	1
18p loss	0 (0%)	205	0.34359	1	0.21231	1	0.14411	1	0.040481	1	0.11899	1	0.11708	1	0.075638	1	0.12542	1	0.048872	1	0.2703	1
18q loss	0 (0%)	204	0.088889	1	0.046838	1	0.0029558	1	0.0029488	1	0.002398	0.856	0.026375	1	0.10926	1	0.23636	1	0.024293	1	0.45806	1
19p loss	0 (0%)	210	0.30151	1	0.063559	1	0.06178	1	0.089202	1	0.074739	1	0.020379	1	0.027829	1	0.83361	1	0.0053173	1	0.82637	1
19q loss	0 (0%)	144	0.24667	1	0.011201	1	1.4012e-45	6.22e-43	7.8561e-38	3.48e-35	9.5737e-22	4.19e-19	4.5028e-27	1.99e-24	4.7461e-13	2.04e-10	7.3266e-07	0.000306	2.8742e-07	0.000121	9.0866e-09	3.86e-06
21q loss	0 (0%)	212	NA	NA	NA	NA	0.58775	1	0.57724	1	0.46036	1	0.61823	1	0.064717	1	0.0092826	1	0.62842	1	0.46062	1
22q loss	0 (0%)	205	1	1	0.087863	1	7.1522e-06	0.00295	9.7359e-05	0.0386	1.9195e-05	0.00779	0.045058	1	0.29297	1	0.29035	1	0.055563	1	0.22668	1
Xq loss	0 (0%)	214	NA	NA	NA	NA	0.1322	1	0.28008	1	0.69752	1	0.10269	1	0.04681	1	0.3826	1	0.52092	1	0.36348	1