Molecular subtypes MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Amp Peak 1(1q32.1) 0 (0%) 197 NA NA NA NA 7.8123e-07 0.000298 8.1257e-05 0.029 1.9049e-05 0.00703 0.3778 1 0.74057 1 0.14016 1 0.57789 1 0.075426 1 Amp Peak 2(4q12) 0 (0%) 210 NA NA NA NA 0.50271 1 0.56488 1 0.39284 1 0.54272 1 0.64663 1 0.15901 1 0.44523 1 0.29974 1 Amp Peak 3(7p11.2) 0 (0%) 165 0.86379 1 0.72616 1 1.0968e-18 4.43e-16 1.0731e-12 4.26e-10 1.168e-09 4.59e-07 0.017227 1 0.00032301 0.113 0.0090489 1 0.0054655 1 0.002501 0.803 Amp Peak 4(7q32.3) 0 (0%) 143 0.7639 1 0.75539 1 8.3915e-17 3.36e-14 2.2985e-07 8.85e-05 2.5251e-05 0.00929 0.028635 1 0.020241 1 0.1297 1 0.045059 1 0.058245 1 Amp Peak 5(8q24.21) 0 (0%) 176 0.36962 1 0.16356 1 6.8684e-06 0.00256 7.7643e-07 0.000297 0.0011407 0.382 0.0018892 0.622 0.06383 1 0.025008 1 0.11988 1 0.024002 1 Amp Peak 6(10p15.1) 0 (0%) 185 0.46711 1 0.47324 1 2.6143e-09 1.02e-06 6.5171e-08 2.53e-05 0.0033469 1 0.0047341 1 0.06928 1 0.47377 1 0.077929 1 0.34028 1 Amp Peak 7(10q11.21) 0 (0%) 215 NA NA NA NA 0.19976 1 0.40207 1 0.21252 1 0.17637 1 0.0060138 1 1 1 0.001029 0.347 1 1 Amp Peak 8(11q23.3) 0 (0%) 182 0.070754 1 0.019039 1 0.92156 1 0.050359 1 0.21675 1 0.23021 1 0.62544 1 0.49754 1 0.06833 1 0.75127 1 Amp Peak 9(12p13.32) 0 (0%) 186 0.86379 1 0.048602 1 1.0003e-05 0.00371 3.7791e-05 0.0138 0.013411 1 0.00095899 0.324 0.019064 1 0.033294 1 0.0019915 0.649 0.0037761 1 Amp Peak 10(12p11.22) 0 (0%) 199 1 1 0.013836 1 0.021217 1 0.04022 1 0.14154 1 0.0032945 1 0.053916 1 0.091362 1 0.0012515 0.416 0.0060023 1 Amp Peak 11(12q14.1) 0 (0%) 206 NA NA NA NA 0.12167 1 0.59623 1 0.029008 1 0.32793 1 0.94072 1 0.49915 1 0.32392 1 1 1 Amp Peak 12(19p13.3) 0 (0%) 169 0.18636 1 0.40979 1 1.6926e-09 6.64e-07 6.6849e-06 0.00249 0.0045873 1 0.0029628 0.942 0.32354 1 0.41684 1 0.83771 1 0.42287 1 Amp Peak 13(19q13.2) 0 (0%) 205 0.36923 1 0.1935 1 1.0184e-06 0.000386 0.00033777 0.118 0.00026654 0.0938 0.010114 1 0.012888 1 0.0046556 1 0.75231 1 0.025107 1 Amp Peak 14(Xp22.33) 0 (0%) 205 NA NA NA NA 0.0024776 0.798 0.0062945 1 0.32277 1 0.090494 1 0.40186 1 0.52466 1 0.69437 1 1 1 Amp Peak 15(Xq11.2) 0 (0%) 189 0.28205 1 0.65299 1 3.6297e-06 0.00136 1.2333e-06 0.000465 0.011838 1 0.00039659 0.137 0.08664 1 0.29878 1 0.13021 1 0.34819 1 Del Peak 1(1p36.31) 0 (0%) 137 0.0005487 0.189 5.8557e-05 0.0211 3.6942e-31 1.51e-28 2.0314e-35 8.33e-33 4.4437e-17 1.78e-14 7.501e-20 3.04e-17 1.3882e-07 5.37e-05 0.0022393 0.728 0.0019446 0.636 6.8271e-05 0.0244 Del Peak 2(1p32.3) 0 (0%) 143 0.028572 1 0.00017271 0.0611 2.8777e-37 1.18e-34 1.0037e-38 4.14e-36 2.6978e-18 1.09e-15 2.0897e-23 8.51e-21 4.5675e-11 1.8e-08 6.2897e-05 0.0226 0.00024813 0.0876 9.3736e-07 0.000356 Del Peak 3(1q43) 0 (0%) 207 NA NA NA NA 0.66566 1 0.36966 1 0.20205 1 0.086077 1 0.65037 1 0.23921 1 0.20256 1 0.15245 1 Del Peak 4(2q37.3) 0 (0%) 188 0.18013 1 0.11586 1 0.0013379 0.443 5.1107e-06 0.00191 0.021793 1 0.021692 1 0.081932 1 0.1504 1 0.40079 1 0.1601 1 Del Peak 5(3p21.1) 0 (0%) 200 1 1 0.0081481 1 0.35851 1 0.02039 1 0.94019 1 0.014346 1 0.029676 1 0.015543 1 0.15284 1 0.041491 1 Del Peak 6(3q29) 0 (0%) 199 0.17504 1 0.56068 1 0.0098173 1 0.0054165 1 0.11373 1 0.073959 1 0.46441 1 0.16386 1 0.98901 1 0.55287 1 Del Peak 7(4q33) 0 (0%) 159 1 1 0.60239 1 0.00050218 0.173 0.00035792 0.124 0.031872 1 0.018551 1 0.00057268 0.196 0.2644 1 0.033148 1 0.042723 1 Del Peak 8(4q35.2) 0 (0%) 158 1 1 0.60239 1 8.1803e-05 0.0291 5.9417e-05 0.0214 0.019041 1 0.016553 1 0.0012155 0.405 0.19705 1 0.038972 1 0.025211 1 Del Peak 9(5q35.2) 0 (0%) 192 0.44623 1 0.018246 1 0.0026055 0.834 0.00055988 0.192 0.030098 1 0.0054043 1 0.011368 1 0.096286 1 0.11574 1 0.54339 1 Del Peak 10(6p24.1) 0 (0%) 199 NA NA NA NA 0.13113 1 0.33992 1 0.43558 1 0.23266 1 0.5676 1 0.51479 1 0.26541 1 0.079739 1 Del Peak 11(6q24.3) 0 (0%) 187 0.047863 1 0.1935 1 0.015832 1 0.009918 1 0.26901 1 0.051936 1 0.030948 1 0.23998 1 0.03312 1 0.055399 1 Del Peak 12(8p23.2) 0 (0%) 209 1 1 0.013836 1 0.0069582 1 0.0099331 1 0.13584 1 0.35957 1 0.23764 1 0.57376 1 0.13774 1 0.5504 1 Del Peak 13(9p21.3) 0 (0%) 142 0.33256 1 0.015262 1 2.3989e-07 9.21e-05 1.2729e-05 0.00471 0.0067945 1 0.046519 1 0.4736 1 0.15866 1 0.014772 1 0.2783 1 Del Peak 14(10q26.2) 0 (0%) 150 0.17949 1 0.022012 1 1.0528e-17 4.23e-15 4.2093e-16 1.68e-13 1.0863e-13 4.32e-11 2.7961e-08 1.09e-05 1.1548e-06 0.000437 0.00076217 0.258 9.3822e-05 0.0333 0.0029287 0.934 Del Peak 15(11p15.5) 0 (0%) 172 0.64244 1 0.00074097 0.252 1.9774e-07 7.63e-05 3.0691e-09 1.2e-06 0.024797 1 0.00028252 0.0992 0.16313 1 0.57582 1 0.38857 1 0.2843 1 Del Peak 16(11q25) 0 (0%) 205 NA NA NA NA 0.0018332 0.605 0.01712 1 0.1258 1 0.090494 1 0.28234 1 0.094184 1 0.53968 1 0.2703 1 Del Peak 17(12q24.11) 0 (0%) 190 1 1 0.013836 1 4.9666e-05 0.018 3.9806e-05 0.0145 0.31167 1 0.008963 1 0.029841 1 0.63513 1 0.27813 1 0.61489 1 Del Peak 18(13q14.2) 0 (0%) 155 0.1801 1 0.00061812 0.211 0.053996 1 0.01349 1 0.48244 1 0.20239 1 0.30767 1 0.7178 1 0.59372 1 0.79408 1 Del Peak 19(13q34) 0 (0%) 170 0.50769 1 0.10604 1 0.24429 1 0.11252 1 0.24232 1 0.15597 1 0.051377 1 0.47114 1 0.093566 1 0.34546 1 Del Peak 20(14q24.3) 0 (0%) 169 0.30286 1 0.1709 1 0.002355 0.761 0.040549 1 0.025302 1 0.11845 1 0.00952 1 0.022565 1 0.0011915 0.398 0.094883 1 Del Peak 21(15q21.3) 0 (0%) 193 0.83946 1 0.65273 1 0.059641 1 0.026772 1 0.0069902 1 0.24653 1 0.46766 1 0.37909 1 0.60054 1 1 1 Del Peak 22(17q25.3) 0 (0%) 205 NA NA NA NA 0.020586 1 0.18012 1 0.65823 1 0.36726 1 0.238 1 0.67739 1 0.89948 1 0.37079 1 Del Peak 23(18p11.32) 0 (0%) 188 0.32144 1 0.31568 1 0.552 1 0.06058 1 0.48063 1 0.64846 1 0.65295 1 0.65341 1 0.73899 1 0.82221 1 Del Peak 24(18q23) 0 (0%) 185 0.32144 1 0.31568 1 0.91795 1 0.042894 1 0.48928 1 0.87526 1 0.70114 1 0.26315 1 0.54564 1 0.41888 1 Del Peak 25(19q13.42) 0 (0%) 104 0.03533 1 0.12707 1 4.3984e-29 1.79e-26 3.4735e-21 1.41e-18 4.8095e-11 1.89e-08 3.347e-12 1.33e-09 2.4976e-07 9.57e-05 0.052275 1 0.00032649 0.114 0.002273 0.736 Del Peak 26(22q13.31) 0 (0%) 189 0.25043 1 0.058829 1 2.211e-06 0.000831 4.7563e-05 0.0173 4.5024e-05 0.0164 0.0018946 0.622 0.21498 1 0.1775 1 0.050789 1 0.27233 1 Del Peak 27(Xp22.31) 0 (0%) 169 0.73001 1 0.018246 1 0.51694 1 0.26254 1 0.54772 1 0.092602 1 0.022488 1 0.15419 1 0.099098 1 0.52209 1 Del Peak 28(Xq21.1) 0 (0%) 190 0.73001 1 0.0010709 0.36 0.46798 1 0.025804 1 0.008376 1 0.025848 1 2.6034e-05 0.00955 0.87825 1 0.055571 1 0.66177 1