Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	97	0.52655	1	0.72087	1	0.1464	1	1	1	0.62387	1	0.33107	1	0.62853	1	0.21333	1
1q gain	0 (0%)	54	0.0022418	1	0.0012608	0.714	0.057493	1	0.46905	1	0.74078	1	1	1	0.38319	1	0.26556	1
2p gain	0 (0%)	99	1	1	0.28581	1	0.78764	1	0.44287	1	0.0057396	1	0.58971	1	0.40358	1	0.66726	1
2q gain	0 (0%)	100	1	1	0.1028	1	0.74827	1	0.23015	1	0.020969	1	1	1	0.2175	1	0.78404	1
3p gain	0 (0%)	101	0.62296	1	0.65354	1	0.10943	1	0.69048	1	0.24846	1	1	1	0.25779	1	0.73971	1
3q gain	0 (0%)	101	0.62296	1	0.65354	1	0.10943	1	0.69048	1	0.24846	1	1	1	0.25779	1	0.73971	1
4p gain	0 (0%)	102	1	1	0.11152	1	0.0091365	1	0.010567	1	0.28834	1	1	1	0.082084	1	0.73971	1
5p gain	0 (0%)	75	0.0076336	1	0.074615	1	0.526	1	0.15696	1	0.79688	1	0.50262	1	0.16948	1	0.64745	1
5q gain	0 (0%)	83	0.098305	1	0.37987	1	0.50429	1	0.13141	1	0.30807	1	0.44699	1	0.18317	1	0.96699	1
6p gain	0 (0%)	89	0.03992	1	0.0047478	1	0.40183	1	0.77693	1	0.32183	1	1	1	0.79579	1	0.43468	1
6q gain	0 (0%)	96	0.14402	1	0.053906	1	0.21344	1	0.73189	1	0.49087	1	1	1	0.98951	1	0.34719	1
7p gain	0 (0%)	80	0.12735	1	0.44923	1	0.29889	1	0.26652	1	0.080207	1	0.72325	1	0.043737	1	0.27443	1
7q gain	0 (0%)	81	0.11626	1	0.033448	1	0.2049	1	0.28982	1	0.19644	1	0.72325	1	0.057351	1	0.35924	1
8p gain	0 (0%)	93	0.26642	1	0.63503	1	0.072785	1	0.30174	1	0.58616	1	1	1	0.54401	1	0.28314	1
8q gain	0 (0%)	59	4.5348e-10	2.62e-07	0.47808	1	0.19873	1	0.63122	1	0.18154	1	0.21791	1	0.88829	1	0.6342	1
9p gain	0 (0%)	104	0.11593	1	0.47628	1	0.84877	1	0.56827	1	0.13608	1	1	1	0.41765	1	0.54824	1
9q gain	0 (0%)	105	0.30877	1	0.79009	1	0.84877	1	0.56827	1	0.30228	1	1	1	0.7748	1	0.86733	1
10p gain	0 (0%)	99	0.2915	1	0.14307	1	0.051984	1	0.036338	1	0.46942	1	1	1	0.047523	1	0.12644	1
10q gain	0 (0%)	102	0.11725	1	0.040232	1	0.067155	1	0.56827	1	0.13608	1	1	1	0.27861	1	0.39087	1
11p gain	0 (0%)	105	0.5306	1	0.79009	1	NA	NA	0.42029	1	NA	NA	1	1	NA	NA	NA	NA
11q gain	0 (0%)	105	0.30877	1	0.25093	1	NA	NA	0.42029	1	0.78443	1	1	1	0.14014	1	0.86733	1
12p gain	0 (0%)	104	0.11593	1	0.81027	1	NA	NA	0.17306	1	0.81996	1	1	1	0.032337	1	1	1
12q gain	0 (0%)	102	0.078522	1	0.76325	1	0.80011	1	0.56827	1	0.70827	1	1	1	0.11943	1	1	1
13q gain	0 (0%)	103	0.041104	1	0.51693	1	0.66559	1	0.30226	1	0.21293	1	1	1	0.5326	1	0.44104	1
14q gain	0 (0%)	102	0.68607	1	0.16727	1	NA	NA	0.50554	1	1	1	0.47105	1	0.91648	1	0.92224	1
15q gain	0 (0%)	102	1	1	0.72063	1	0.47973	1	1	1	1	1	1	1	0.4779	1	0.63581	1
16p gain	0 (0%)	104	0.11593	1	0.47628	1	NA	NA	0.17306	1	0.67309	1	1	1	0.3306	1	0.54824	1
17p gain	0 (0%)	103	0.86471	1	0.11866	1	0.84877	1	0.56827	1	0.70827	1	1	1	0.77209	1	0.51102	1
17q gain	0 (0%)	85	0.0082975	1	0.95316	1	0.71335	1	0.56647	1	0.76169	1	0.44699	1	0.11343	1	0.87187	1
18p gain	0 (0%)	104	0.21452	1	0.19818	1	NA	NA	0.17306	1	0.78443	1	1	1	0.17418	1	0.86733	1
18q gain	0 (0%)	103	0.27495	1	0.040232	1	0.6606	1	0.069741	1	0.67309	1	1	1	0.1126	1	1	1
19p gain	0 (0%)	97	0.78637	1	0.0092995	1	0.04817	1	0.036338	1	0.0021409	1	0.5921	1	0.37236	1	0.54456	1
19q gain	0 (0%)	95	0.37182	1	0.0010359	0.59	0.04803	1	0.0032062	1	0.071159	1	0.6001	1	0.036451	1	0.78641	1
20p gain	0 (0%)	85	0.6992	1	0.19051	1	0.076008	1	0.14353	1	0.47174	1	1	1	0.25462	1	0.57285	1
20q gain	0 (0%)	84	0.59248	1	0.22278	1	0.050465	1	0.25045	1	0.30807	1	1	1	0.1905	1	0.72756	1
21q gain	0 (0%)	102	0.5175	1	0.37978	1	0.8955	1	0.30226	1	1	1	1	1	0.18573	1	0.50764	1
22q gain	0 (0%)	99	0.62584	1	0.72408	1	0.073963	1	0.12219	1	1	1	0.58971	1	0.070349	1	0.66726	1
Xq gain	0 (0%)	103	0.27495	1	0.086652	1	0.50201	1	0.25831	1	0.21293	1	0.47105	1	0.4779	1	0.08789	1
1p loss	0 (0%)	91	0.84645	1	0.0040496	1	0.072028	1	0.76371	1	0.14117	1	0.20766	1	0.33887	1	0.5168	1
1q loss	0 (0%)	102	0.68607	1	0.32295	1	0.016562	1	1	1	0.35132	1	1	1	0.3947	1	0.51102	1
2p loss	0 (0%)	104	0.11593	1	0.58018	1	0.28337	1	0.25831	1	0.43028	1	1	1	0.7748	1	0.15035	1
2q loss	0 (0%)	103	0.041104	1	0.32295	1	0.56843	1	0.63368	1	0.33355	1	1	1	0.88727	1	0.14631	1
3p loss	0 (0%)	98	0.13742	1	0.090337	1	0.012832	1	0.0039625	1	0.21031	1	0.58971	1	0.0046114	1	0.62018	1
3q loss	0 (0%)	104	1	1	0.054132	1	0.23876	1	0.069741	1	1	1	1	1	0.17418	1	0.47949	1
4p loss	0 (0%)	95	0.0011371	0.646	0.0073914	1	0.62534	1	0.47675	1	0.58894	1	0.28308	1	0.10948	1	0.3773	1
4q loss	0 (0%)	88	0.00011687	0.0671	0.013807	1	0.85733	1	0.77087	1	0.15533	1	0.1081	1	0.11705	1	0.21611	1
5p loss	0 (0%)	105	1	1	NA	NA	NA	NA	0.50554	1	NA	NA	0.22146	1	NA	NA	NA	NA
5q loss	0 (0%)	101	0.62296	1	0.088122	1	0.58044	1	1	1	0.27937	1	0.47105	1	0.2963	1	0.071684	1
6q loss	0 (0%)	86	0.47817	1	0.90952	1	0.7295	1	0.13141	1	0.84147	1	1	1	0.0084296	1	0.76777	1
7p loss	0 (0%)	103	0.041104	1	0.51693	1	0.00051401	0.293	0.63368	1	0.84497	1	1	1	0.86718	1	0.3817	1
7q loss	0 (0%)	100	0.03208	1	1	1	2.4119e-05	0.0139	1	1	0.77276	1	0.18875	1	0.84738	1	0.64655	1
8p loss	0 (0%)	63	5.1304e-07	0.000296	0.19174	1	0.19635	1	0.62605	1	0.70825	1	0.51943	1	0.26315	1	0.10662	1
8q loss	0 (0%)	99	0.00042052	0.241	0.67014	1	0.0038855	1	0.63368	1	0.28834	1	1	1	0.46399	1	0.35444	1
9p loss	0 (0%)	85	0.042275	1	0.79385	1	0.67436	1	0.56647	1	0.57331	1	0.69584	1	0.71988	1	0.70873	1
9q loss	0 (0%)	86	0.063451	1	0.39917	1	0.5549	1	0.77087	1	0.78711	1	1	1	0.53743	1	0.90037	1
10p loss	0 (0%)	102	0.078522	1	1	1	0.69598	1	1	1	0.85716	1	0.53643	1	0.43734	1	0.87506	1
10q loss	0 (0%)	90	0.024729	1	0.4826	1	0.16005	1	0.13141	1	0.35836	1	0.1081	1	0.0047832	1	0.12006	1
11p loss	0 (0%)	100	0.58766	1	0.14307	1	0.62364	1	0.64308	1	0.85716	1	0.53643	1	0.017828	1	0.87506	1
11q loss	0 (0%)	98	0.41268	1	0.9172	1	0.0088504	1	0.06149	1	0.55022	1	0.23537	1	0.018986	1	0.073475	1
12p loss	0 (0%)	97	0.14972	1	0.15904	1	0.11023	1	1	1	0.2436	1	1	1	0.0078929	1	0.22084	1
12q loss	0 (0%)	104	0.21452	1	1	1	0.23876	1	1	1	1	1	1	1	0.17418	1	0.47949	1
13q loss	0 (0%)	75	0.0026745	1	0.14164	1	0.045605	1	0.43598	1	0.055202	1	0.73287	1	0.001205	0.683	0.44331	1
14q loss	0 (0%)	78	0.00026632	0.153	0.274	1	0.010127	1	0.11182	1	0.56649	1	1	1	0.098696	1	0.36708	1
15q loss	0 (0%)	97	0.069476	1	0.042485	1	0.98748	1	0.44287	1	0.58894	1	0.28308	1	0.18574	1	0.29922	1
16p loss	0 (0%)	86	0.57457	1	0.028764	1	0.0075338	1	0.039708	1	0.080736	1	0.45215	1	0.02293	1	0.002864	1
16q loss	0 (0%)	78	0.10056	1	0.0010518	0.598	0.07101	1	0.068009	1	0.036599	1	0.031206	1	0.21322	1	0.024622	1
17p loss	0 (0%)	65	0.0018031	1	0.015542	1	0.29884	1	0.63366	1	0.13517	1	0.0090028	1	0.004717	1	0.001933	1
17q loss	0 (0%)	102	0.5175	1	0.088122	1	0.69268	1	0.63368	1	0.85716	1	0.53643	1	0.69349	1	0.77903	1
18p loss	0 (0%)	95	0.49406	1	0.01514	1	0.0049336	1	0.71245	1	0.82576	1	1	1	0.31403	1	0.49477	1
18q loss	0 (0%)	93	0.18241	1	0.044843	1	0.013078	1	0.47675	1	0.64853	1	1	1	0.16752	1	1	1
19p loss	0 (0%)	101	0.79177	1	0.035165	1	0.4007	1	1	1	1	1	0.47105	1	0.41279	1	0.92224	1
20p loss	0 (0%)	103	0.27495	1	0.51693	1	NA	NA	1	1	0.061772	1	0.1028	1	0.61578	1	0.3061	1
21q loss	0 (0%)	87	0.1041	1	0.90529	1	0.12986	1	0.47675	1	0.24739	1	0.01895	1	0.090809	1	0.13012	1
22q loss	0 (0%)	96	0.14402	1	0.73344	1	0.098085	1	0.15168	1	0.9097	1	0.33107	1	0.05099	1	0.39327	1