Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p22.3)	0 (0%)	79	0.030167	1	0.12466	1	0.21758	1	0.11182	1	0.20607	1	0.27878	1	0.156	1	0.52167	1
Amp Peak  2(1q22)	0 (0%)	30	0.00062459	0.246	3.4089e-05	0.0137	0.13149	1	0.58143	1	0.4124	1	0.72325	1	0.26866	1	0.29957	1
Amp Peak  3(1q42.3)	0 (0%)	36	0.15906	1	0.0031337	1	0.042939	1	0.80185	1	0.53213	1	0.49571	1	0.71912	1	0.3124	1
Amp Peak  4(2p24.1)	0 (0%)	84	0.15813	1	0.68839	1	0.70159	1	0.25045	1	0.16428	1	0.70471	1	0.14494	1	0.043441	1
Amp Peak  5(2q31.2)	0 (0%)	83	0.098305	1	0.63798	1	0.62584	1	0.77819	1	0.30428	1	1	1	0.45661	1	0.076721	1
Amp Peak  6(3q26.31)	0 (0%)	87	2.9075e-05	0.0118	0.048612	1	0.12627	1	1	1	0.37819	1	0.22403	1	0.37494	1	0.046093	1
Amp Peak  7(4q13.3)	0 (0%)	95	0.32533	1	0.6461	1	0.70682	1	0.30174	1	0.40306	1	0.34804	1	0.071871	1	0.57875	1
Amp Peak  8(5p15.33)	0 (0%)	55	0.00013511	0.0543	0.25405	1	0.16535	1	0.093812	1	0.29956	1	0.52288	1	0.64176	1	0.14021	1
Amp Peak  9(5q35.3)	0 (0%)	68	0.018931	1	0.33634	1	0.35816	1	0.4431	1	1	1	1	1	0.82164	1	0.8661	1
Amp Peak 10(6p22.3)	0 (0%)	66	0.0038986	1	0.0011592	0.454	0.05785	1	1	1	0.4765	1	1	1	0.37054	1	0.96095	1
Amp Peak 11(6p21.1)	0 (0%)	63	0.0044498	1	2.0093e-05	0.00816	0.0062322	1	0.33188	1	0.34594	1	1	1	0.24741	1	0.38366	1
Amp Peak 12(6q12)	0 (0%)	74	0.054375	1	0.041786	1	0.10074	1	1	1	0.069492	1	0.32165	1	0.078162	1	0.41662	1
Amp Peak 13(7q21.2)	0 (0%)	69	0.10121	1	0.16409	1	0.3972	1	0.20034	1	0.66508	1	0.31706	1	0.24693	1	0.87247	1
Amp Peak 14(8q11.21)	0 (0%)	63	8.8714e-07	0.000366	0.65279	1	0.3212	1	0.80559	1	0.26116	1	0.75082	1	0.89041	1	0.46853	1
Amp Peak 15(8q24.13)	0 (0%)	44	1.509e-06	0.000622	0.39826	1	0.1779	1	0.62262	1	0.39991	1	0.74347	1	0.55937	1	0.9608	1
Amp Peak 16(10p15.1)	0 (0%)	86	0.018893	1	0.035673	1	0.27326	1	0.016738	1	0.447	1	0.68893	1	0.0101	1	0.090375	1
Amp Peak 17(11q13.3)	0 (0%)	88	0.14662	1	0.94926	1	0.15955	1	0.73189	1	0.11621	1	0.1081	1	0.1333	1	0.046708	1
Amp Peak 18(12q23.1)	0 (0%)	86	0.042752	1	0.31417	1	0.66832	1	0.13141	1	0.47174	1	0.45215	1	0.12365	1	0.92083	1
Amp Peak 19(13q32.3)	0 (0%)	85	0.0012725	0.498	0.071817	1	0.37202	1	0.14353	1	0.5363	1	0.12132	1	0.071656	1	0.1994	1
Amp Peak 20(15q26.3)	0 (0%)	92	0.70798	1	1	1	0.60981	1	0.54163	1	0.93235	1	1	1	0.73578	1	0.86066	1
Amp Peak 21(17p11.2)	0 (0%)	92	0.55249	1	0.93709	1	0.39035	1	0.30174	1	1	1	1	1	0.88502	1	0.65867	1
Amp Peak 22(17q23.1)	0 (0%)	64	0.011366	1	0.11528	1	0.30077	1	0.22006	1	0.89223	1	0.75385	1	0.33586	1	0.54495	1
Amp Peak 23(17q25.3)	0 (0%)	60	3.5682e-06	0.00147	0.018956	1	0.38845	1	0.81144	1	0.92861	1	0.53342	1	0.12592	1	0.5112	1
Amp Peak 24(19p13.12)	0 (0%)	80	0.007297	1	0.0017682	0.688	0.039054	1	0.046443	1	0.4124	1	0.72325	1	0.00022117	0.0885	0.26174	1
Amp Peak 25(19q13.11)	0 (0%)	73	0.006812	1	0.19235	1	0.6859	1	0.30222	1	0.46244	1	0.31962	1	0.0069539	1	0.28685	1
Amp Peak 26(20q13.13)	0 (0%)	70	0.019186	1	0.40127	1	0.0044898	1	0.46072	1	0.8854	1	0.51882	1	0.16488	1	0.16302	1
Del Peak  1(1p36.32)	0 (0%)	58	0.031965	1	0.012442	1	0.27624	1	0.63122	1	0.66079	1	0.21791	1	0.20166	1	0.16342	1
Del Peak  2(1p35.2)	0 (0%)	69	0.33105	1	0.001885	0.731	0.074402	1	0.12712	1	0.079193	1	0.31785	1	0.26823	1	0.058527	1
Del Peak  3(2q22.1)	0 (0%)	97	0.049344	1	0.19043	1	0.7513	1	0.69048	1	0.043184	1	0.091129	1	0.1977	1	0.0022057	0.854
Del Peak  4(2q37.3)	0 (0%)	89	0.10872	1	0.8073	1	0.44193	1	0.75007	1	0.072393	1	0.088592	1	0.28232	1	0.035285	1
Del Peak  5(3p13)	0 (0%)	90	0.13057	1	0.092546	1	0.0023805	0.919	0.00016288	0.0653	0.035516	1	1	1	3.7815e-06	0.00155	0.26433	1
Del Peak  6(4q24)	0 (0%)	61	6.9848e-06	0.00286	0.012261	1	0.41208	1	0.8094	1	0.14056	1	1	1	0.22874	1	0.20284	1
Del Peak  7(4q35.1)	0 (0%)	62	3.251e-05	0.0131	0.0014469	0.564	0.11559	1	0.33662	1	0.18124	1	0.53227	1	0.42008	1	0.074624	1
Del Peak  8(5q23.1)	0 (0%)	91	0.9454	1	0.13265	1	0.33543	1	0.15168	1	0.26602	1	0.20766	1	0.15586	1	0.33494	1
Del Peak  9(6q26)	0 (0%)	65	0.24885	1	0.2457	1	0.66898	1	0.12712	1	0.29431	1	0.74709	1	0.66673	1	0.32008	1
Del Peak 10(8p23.3)	0 (0%)	42	2.986e-15	1.24e-12	0.42224	1	0.2245	1	0.62262	1	0.62577	1	0.51799	1	0.15956	1	0.14428	1
Del Peak 11(8p23.2)	0 (0%)	41	1.5387e-16	6.4e-14	0.1451	1	0.23431	1	0.46006	1	0.4918	1	0.19497	1	0.18616	1	0.072503	1
Del Peak 12(8p21.1)	0 (0%)	37	3.2003e-15	1.32e-12	0.29188	1	0.27306	1	0.6226	1	0.28988	1	0.31785	1	0.11864	1	0.18176	1
Del Peak 13(9p21.3)	0 (0%)	64	0.0099247	1	0.61112	1	0.78091	1	0.33662	1	0.36482	1	0.34244	1	0.13667	1	0.070416	1
Del Peak 14(10q23.31)	0 (0%)	74	0.0051777	1	0.7741	1	0.0054836	1	0.07223	1	0.081985	1	0.1691	1	0.00085727	0.337	0.0083244	1
Del Peak 15(10q24.33)	0 (0%)	76	0.0036961	1	0.8607	1	0.0055962	1	0.064677	1	0.015236	1	0.088135	1	0.00032208	0.128	0.0041947	1
Del Peak 16(11q14.1)	0 (0%)	87	0.56266	1	0.86155	1	0.42921	1	0.55367	1	0.93953	1	1	1	0.77559	1	0.5052	1
Del Peak 17(12p12.1)	0 (0%)	83	0.60189	1	0.32995	1	0.24752	1	0.17713	1	0.12018	1	0.017957	1	0.0024949	0.961	0.10171	1
Del Peak 18(12q24.33)	0 (0%)	89	0.12144	1	0.32042	1	0.35154	1	1	1	0.049775	1	0.39143	1	0.41022	1	1	1
Del Peak 19(13q14.2)	0 (0%)	61	1.239e-05	0.00504	0.18464	1	0.028339	1	0.093812	1	0.053126	1	0.52472	1	0.00029918	0.119	0.12017	1
Del Peak 20(14q23.3)	0 (0%)	68	0.00030168	0.12	0.16818	1	0.4006	1	0.048155	1	0.72603	1	0.017048	1	0.044984	1	0.30467	1
Del Peak 21(14q32.33)	0 (0%)	68	1.135e-05	0.00463	0.094822	1	0.21766	1	0.32459	1	0.33447	1	0.19694	1	0.048155	1	0.37779	1
Del Peak 22(16q23.1)	0 (0%)	63	0.013843	1	0.01634	1	0.011437	1	0.053794	1	0.30519	1	0.33783	1	0.12279	1	0.060157	1
Del Peak 23(17p12)	0 (0%)	46	0.005336	1	0.23851	1	0.1213	1	0.13903	1	0.0044711	1	0.025791	1	0.00047276	0.187	0.00043273	0.171
Del Peak 24(19p13.3)	0 (0%)	83	0.017651	1	0.013807	1	0.50323	1	0.26652	1	0.14615	1	0.05206	1	0.011762	1	0.19631	1
Del Peak 25(22q12.1)	0 (0%)	86	0.1526	1	0.3297	1	0.12299	1	0.23524	1	0.94346	1	0.43543	1	0.45214	1	0.90037	1
Del Peak 26(22q13.32)	0 (0%)	80	0.033788	1	0.422	1	0.041456	1	1	1	0.45505	1	0.46328	1	0.86707	1	0.33007	1