Molecular subtypes MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 0 (0%) 435 1 1 1 1 1.6258e-07 0.000141 0.015537 1 0.081519 1 0.024133 1 0.024329 1 0.30953 1 0.63509 1 0.76296 1 1 1 0.38636 1 1q gain 0 (0%) 302 0.46488 1 0.88479 1 0.033696 1 1.6666e-06 0.00143 0.13068 1 0.14618 1 0.00062963 0.486 0.64233 1 0.49354 1 0.60386 1 0.44385 1 0.074429 1 2p gain 0 (0%) 443 0.03123 1 0.015087 1 2.2832e-08 2.01e-05 1.2625e-06 0.00108 0.078071 1 0.030149 1 0.00016154 0.13 0.00076632 0.588 0.00040494 0.315 0.007648 1 0.0029477 1 0.038151 1 2q gain 0 (0%) 448 0.0302 1 0.025306 1 2.0907e-06 0.00178 1.7705e-08 1.56e-05 0.25214 1 0.27599 1 0.00018355 0.147 0.01826 1 0.00016153 0.13 0.0020987 1 0.00015216 0.123 0.0086937 1 3p gain 0 (0%) 480 NA NA NA NA 0.016698 1 0.12028 1 0.13709 1 0.27068 1 0.0070266 1 0.0018011 1 0.87616 1 0.66359 1 0.75833 1 0.43603 1 3q gain 0 (0%) 463 NA NA NA NA 0.0023546 1 0.010681 1 0.078299 1 0.022215 1 0.0045641 1 0.10727 1 0.042959 1 0.35803 1 0.089214 1 0.10493 1 4p gain 0 (0%) 463 0.55363 1 0.41815 1 0.00011374 0.0926 0.043956 1 0.094831 1 0.034726 1 0.85129 1 0.38226 1 0.56372 1 0.44707 1 0.63295 1 0.4418 1 4q gain 0 (0%) 483 NA NA NA NA 0.022534 1 0.95542 1 0.32524 1 0.253 1 0.53234 1 0.34772 1 0.12888 1 0.22259 1 0.31273 1 0.036339 1 5p gain 0 (0%) 309 0.48692 1 0.4185 1 5.0329e-12 4.49e-09 0.042306 1 0.18205 1 0.61159 1 0.013032 1 0.021923 1 0.11856 1 0.081042 1 0.28853 1 0.20284 1 5q gain 0 (0%) 433 0.017738 1 0.64431 1 0.077382 1 0.0013211 0.996 0.49786 1 0.1641 1 0.0064444 1 0.037522 1 0.44655 1 0.14608 1 0.30612 1 0.24696 1 6p gain 0 (0%) 420 0.29183 1 0.05069 1 0.0091672 1 9.4758e-08 8.28e-05 0.0093568 1 0.26104 1 0.00282 1 0.26136 1 0.070268 1 0.34207 1 0.1541 1 0.096496 1 6q gain 0 (0%) 474 NA NA NA NA 0.083495 1 0.0025837 1 0.10777 1 0.064469 1 0.11776 1 0.60543 1 0.1044 1 0.032667 1 0.28301 1 0.064737 1 7p gain 0 (0%) 334 0.75419 1 0.5228 1 3.5094e-21 3.14e-18 0.00038498 0.301 8.9258e-05 0.073 0.0094814 1 1.2361e-06 0.00106 4.9825e-07 0.000431 0.00028332 0.224 0.0026287 1 0.0016017 1 0.00077242 0.592 7q gain 0 (0%) 381 0.38828 1 0.70175 1 3.1278e-10 2.78e-07 0.020705 1 0.078881 1 0.29831 1 1.6806e-05 0.0141 1.2179e-05 0.0102 0.14224 1 0.23816 1 0.029347 1 0.1167 1 8p gain 0 (0%) 432 1 1 0.41815 1 7.738e-11 6.89e-08 0.0037094 1 0.44884 1 0.54197 1 4.6525e-05 0.0386 0.0056838 1 0.18863 1 0.10078 1 0.85016 1 0.064931 1 8q gain 0 (0%) 344 0.064056 1 0.19076 1 1.8352e-23 1.65e-20 1.26e-07 0.00011 0.027222 1 0.0040773 1 0.00091251 0.693 0.00077722 0.595 8.0527e-08 7.05e-05 1.6659e-07 0.000145 0.0016796 1 1.4619e-05 0.0123 9p gain 0 (0%) 477 NA NA NA NA 0.1041 1 0.007058 1 1 1 0.84262 1 0.25296 1 0.21625 1 0.30284 1 0.15698 1 0.045361 1 0.23954 1 9q gain 0 (0%) 485 NA NA NA NA 0.024189 1 0.27888 1 0.39223 1 0.26858 1 0.20058 1 1 1 0.26815 1 0.24873 1 0.032185 1 0.16712 1 10p gain 0 (0%) 442 NA NA NA NA 0.002426 1 0.00030919 0.244 0.16869 1 0.16046 1 0.0033347 1 0.086687 1 0.061209 1 0.22031 1 0.0037604 1 0.075604 1 10q gain 0 (0%) 463 NA NA NA NA 0.25067 1 0.00080604 0.615 0.50141 1 0.1573 1 7.0591e-06 0.00596 0.3155 1 0.78224 1 0.3634 1 0.49522 1 0.19551 1 11p gain 0 (0%) 457 NA NA NA NA 0.015212 1 0.04555 1 0.18821 1 0.60176 1 0.061254 1 0.34922 1 0.031261 1 0.10884 1 0.03611 1 0.24678 1 11q gain 0 (0%) 442 0.11976 1 0.15726 1 0.00018712 0.15 0.020743 1 0.0015858 1 0.035395 1 0.0070532 1 0.002708 1 0.0046657 1 0.024322 1 0.0044733 1 0.05228 1 12p gain 0 (0%) 434 0.56496 1 0.13192 1 4.7366e-08 4.16e-05 3.9723e-05 0.033 0.17972 1 0.1154 1 0.00096369 0.73 0.00037483 0.294 0.00025698 0.204 0.0035673 1 0.00015413 0.125 0.018441 1 12q gain 0 (0%) 445 0.56496 1 0.13192 1 8.6192e-06 0.00727 0.00012545 0.102 0.15757 1 0.089273 1 0.0001892 0.151 0.0012316 0.931 0.0074355 1 0.075678 1 0.0054703 1 0.15804 1 13q gain 0 (0%) 477 0.19234 1 0.15726 1 0.56488 1 0.0048703 1 0.28818 1 0.19608 1 0.15092 1 0.10322 1 0.79196 1 0.20177 1 1 1 0.4422 1 14q gain 0 (0%) 434 NA NA NA NA 5.1039e-07 0.000441 2.9826e-06 0.00254 0.12705 1 0.51774 1 0.00056561 0.439 0.018435 1 0.0071956 1 0.00035498 0.279 0.0023398 1 0.021128 1 15q gain 0 (0%) 479 NA NA NA NA 0.72326 1 0.22085 1 0.81901 1 0.5781 1 0.20013 1 0.21241 1 0.54771 1 0.41528 1 0.69558 1 0.14972 1 16p gain 0 (0%) 422 0.35825 1 0.32152 1 0.0033257 1 0.00035677 0.28 0.064725 1 0.56106 1 0.00011064 0.0902 0.016273 1 0.21786 1 0.14852 1 0.16834 1 0.52673 1 16q gain 0 (0%) 450 0.19234 1 0.051411 1 0.017513 1 0.02678 1 0.031728 1 0.038258 1 0.0088049 1 0.23626 1 0.25406 1 0.13727 1 0.32983 1 0.79356 1 17p gain 0 (0%) 464 NA NA NA NA 4.7633e-06 0.00403 8.4812e-05 0.0695 0.66456 1 0.53278 1 0.544 1 0.35624 1 0.041326 1 0.18362 1 0.23962 1 0.55788 1 17q gain 0 (0%) 413 0.044722 1 0.70175 1 4.6186e-10 4.1e-07 1.59e-07 0.000138 0.42297 1 0.19877 1 0.0057512 1 0.059537 1 0.021788 1 0.029841 1 0.077392 1 0.10904 1 18p gain 0 (0%) 449 NA NA NA NA 3.5725e-07 0.00031 0.00015978 0.129 0.14832 1 0.33818 1 0.20887 1 0.051713 1 0.011177 1 0.019671 1 0.01507 1 0.0043999 1 18q gain 0 (0%) 466 NA NA NA NA 2.2439e-06 0.00191 0.00094665 0.718 0.089952 1 0.037314 1 0.028423 1 0.0049668 1 0.085314 1 0.071568 1 0.051747 1 0.0070323 1 19p gain 0 (0%) 487 NA NA NA NA 1 1 0.25383 1 0.7761 1 1 1 0.48209 1 1 1 0.5117 1 0.86194 1 1 1 1 1 19q gain 0 (0%) 469 NA NA NA NA 0.0008179 0.623 0.062502 1 0.19818 1 0.0077234 1 0.0068897 1 0.019358 1 0.11202 1 0.042639 1 0.081862 1 0.19927 1 20p gain 0 (0%) 430 0.023526 1 0.012653 1 1.8783e-06 0.0016 2.2699e-06 0.00193 0.024914 1 0.68732 1 5.7439e-05 0.0475 0.00013508 0.11 0.018901 1 0.0077237 1 0.017868 1 0.067198 1 20q gain 0 (0%) 415 0.0023737 1 0.0021899 1 3.1081e-07 0.00027 4.307e-09 3.81e-06 0.00083915 0.639 0.091968 1 3.2623e-06 0.00276 3.9418e-05 0.0328 0.0019044 1 0.0026504 1 0.009365 1 0.011426 1 21q gain 0 (0%) 450 0.19234 1 0.15726 1 0.00022425 0.179 0.0026001 1 0.09138 1 0.052338 1 0.23005 1 0.16999 1 0.059583 1 0.3802 1 0.61919 1 0.67003 1 22q gain 0 (0%) 473 NA NA NA NA 0.002945 1 0.085034 1 0.78173 1 0.17219 1 0.17515 1 0.39831 1 0.092872 1 0.056439 1 0.071418 1 0.2291 1 Xq gain 0 (0%) 476 0.7496 1 0.59113 1 8.3654e-05 0.0687 0.43971 1 0.63642 1 0.34512 1 0.28447 1 0.42097 1 0.45226 1 0.46539 1 0.13868 1 0.24777 1 1p loss 0 (0%) 464 NA NA NA NA 2.163e-05 0.0181 0.00017477 0.141 0.11126 1 0.19883 1 0.1126 1 0.18866 1 0.78901 1 0.14613 1 0.29949 1 0.55744 1 1q loss 0 (0%) 483 NA NA NA NA 0.00069286 0.533 0.092432 1 0.2221 1 0.015141 1 0.33996 1 0.21226 1 0.45228 1 0.16527 1 0.49964 1 0.1579 1 2p loss 0 (0%) 487 NA NA NA NA 0.86677 1 0.56291 1 1 1 0.61732 1 0.54815 1 1 1 0.7577 1 0.86194 1 0.8462 1 1 1 2q loss 0 (0%) 489 NA NA NA NA 0.042148 1 0.21774 1 NA NA NA NA 0.8702 1 1 1 0.54389 1 0.79746 1 0.83146 1 0.77766 1 3p loss 0 (0%) 397 0.2081 1 0.17643 1 1.8567e-06 0.00159 3.2376e-06 0.00275 0.1244 1 0.25944 1 0.51276 1 0.038672 1 0.028759 1 0.018448 1 0.0038259 1 0.19041 1 3q loss 0 (0%) 437 0.55363 1 0.41815 1 0.00036809 0.289 0.00016615 0.134 0.34086 1 0.93304 1 0.16101 1 0.61206 1 0.43974 1 0.045132 1 0.0048821 1 0.34207 1 4p loss 0 (0%) 453 NA NA NA NA 1.2191e-05 0.0102 0.0003758 0.294 0.19181 1 0.24819 1 0.00066842 0.515 4.1306e-05 0.0343 0.00010188 0.0831 0.0080962 1 0.007646 1 0.033606 1 4q loss 0 (0%) 446 0.0060484 1 0.0070565 1 1.2269e-10 1.09e-07 3.2591e-06 0.00276 0.46872 1 0.5783 1 9.0995e-05 0.0743 9.3857e-08 8.21e-05 0.00038576 0.301 0.00057878 0.449 0.0081031 1 0.0023469 1 5p loss 0 (0%) 482 NA NA NA NA 0.026227 1 0.14576 1 0.83787 1 0.8808 1 0.35371 1 0.007677 1 0.014652 1 0.028626 1 0.023115 1 0.039126 1 5q loss 0 (0%) 433 0.023526 1 0.012653 1 1.8374e-06 0.00157 8.4794e-05 0.0695 0.038819 1 0.098574 1 0.00017648 0.142 0.046769 1 0.021245 1 0.010463 1 0.027814 1 0.043359 1 6p loss 0 (0%) 450 0.33468 1 0.30806 1 0.0014906 1 0.033385 1 0.10665 1 0.48792 1 0.1994 1 0.89633 1 0.35671 1 0.61156 1 0.15877 1 0.16788 1 6q loss 0 (0%) 381 0.80335 1 0.72164 1 0.037648 1 1.3262e-07 0.000116 0.15336 1 0.043674 1 0.0070471 1 0.19393 1 0.43113 1 0.87875 1 0.32646 1 0.016804 1 7p loss 0 (0%) 479 0.55363 1 0.41815 1 0.011896 1 0.41841 1 0.52239 1 0.93754 1 0.024383 1 0.066953 1 0.10006 1 0.80139 1 0.91722 1 0.89835 1 7q loss 0 (0%) 476 0.52998 1 0.18587 1 0.61431 1 0.4938 1 0.68724 1 0.82053 1 0.3147 1 0.27243 1 1 1 0.73423 1 0.3387 1 0.24563 1 8p loss 0 (0%) 371 0.10434 1 0.17288 1 1.7198e-20 1.54e-17 6.273e-05 0.0518 0.25853 1 0.054731 1 0.086793 1 0.0020934 1 0.018357 1 0.012558 1 0.01105 1 0.075207 1 8q loss 0 (0%) 472 NA NA NA NA 0.00028483 0.225 0.64781 1 0.0025746 1 0.027501 1 0.052895 1 0.010872 1 0.63382 1 0.61901 1 0.50651 1 0.094709 1 9p loss 0 (0%) 351 0.05116 1 0.07018 1 5.5485e-05 0.046 9.9883e-06 0.00841 0.27214 1 0.038179 1 0.0059793 1 0.016775 1 0.81718 1 0.72156 1 0.6746 1 0.7734 1 9q loss 0 (0%) 373 0.20319 1 0.22214 1 1.0428e-06 0.000898 5.0546e-08 4.43e-05 0.39001 1 0.19775 1 0.026156 1 0.012701 1 0.12365 1 0.22246 1 0.1727 1 0.33301 1 10p loss 0 (0%) 455 0.90089 1 0.8178 1 2.067e-05 0.0173 0.0067739 1 0.052545 1 0.099122 1 0.083242 1 0.51045 1 0.045349 1 0.012846 1 0.00078395 0.599 0.00020133 0.161 10q loss 0 (0%) 444 0.7496 1 0.59113 1 0.00044747 0.348 0.00061339 0.474 0.015725 1 0.058513 1 0.022672 1 0.60065 1 0.29754 1 0.028813 1 0.11118 1 0.0059771 1 11p loss 0 (0%) 457 0.33468 1 0.10222 1 0.00030569 0.241 0.54596 1 0.0045403 1 0.026834 1 0.071156 1 0.024958 1 0.079834 1 0.051147 1 0.01592 1 0.15597 1 11q loss 0 (0%) 462 0.47379 1 0.15726 1 0.00075446 0.579 0.52625 1 0.010249 1 0.025131 1 0.39415 1 0.26201 1 0.28851 1 0.77332 1 0.45558 1 0.50535 1 12p loss 0 (0%) 453 0.7282 1 0.8178 1 0.7281 1 0.0023136 1 0.81934 1 0.53401 1 0.071998 1 0.59252 1 0.26859 1 0.7113 1 0.031541 1 0.96523 1 12q loss 0 (0%) 469 NA NA NA NA 0.09558 1 0.43896 1 0.88633 1 0.30468 1 0.40413 1 0.92078 1 0.38626 1 0.82205 1 0.13619 1 0.9513 1 13q loss 0 (0%) 378 0.14244 1 0.14514 1 6.3744e-27 5.72e-24 0.00012216 0.0993 0.32241 1 0.01245 1 0.0012359 0.933 0.081915 1 0.0046765 1 0.040364 1 0.08794 1 0.071533 1 14q loss 0 (0%) 446 0.40121 1 0.41815 1 0.026006 1 0.1566 1 0.0087521 1 0.0080766 1 0.19454 1 0.55944 1 0.046328 1 0.22524 1 0.020227 1 0.70363 1 15q loss 0 (0%) 395 0.40454 1 0.21903 1 7.7536e-14 6.93e-11 3.7021e-08 3.25e-05 0.48115 1 0.018752 1 6.09e-05 0.0503 0.00041818 0.325 0.00026922 0.213 0.00023871 0.19 0.017675 1 0.0060547 1 16p loss 0 (0%) 454 NA NA NA NA 7.15e-05 0.0588 0.016939 1 0.044709 1 0.28061 1 0.13474 1 0.11394 1 0.096874 1 0.08083 1 0.15407 1 0.22457 1 16q loss 0 (0%) 436 0.015881 1 1 1 6.7991e-09 6e-06 0.0043207 1 0.0092781 1 0.01119 1 0.0061184 1 0.17232 1 0.018202 1 0.29214 1 0.0091574 1 0.25497 1 17p loss 0 (0%) 375 0.3992 1 0.63133 1 3.3486e-08 2.95e-05 0.00059317 0.459 0.057179 1 0.20966 1 0.40028 1 0.56668 1 0.65563 1 0.52848 1 0.5423 1 0.348 1 17q loss 0 (0%) 474 NA NA NA NA 0.10319 1 0.036517 1 0.049409 1 0.759 1 0.57235 1 0.077701 1 0.58678 1 0.0091024 1 0.72084 1 0.23133 1 18p loss 0 (0%) 413 0.41986 1 0.41218 1 5.9191e-09 5.23e-06 0.016265 1 0.90421 1 0.22827 1 0.036702 1 0.35269 1 0.58306 1 0.91983 1 0.022356 1 0.34506 1 18q loss 0 (0%) 381 0.41986 1 0.41218 1 9.9824e-13 8.91e-10 0.00086472 0.657 0.35082 1 0.12583 1 0.0002544 0.202 0.024221 1 0.1353 1 0.95043 1 0.040404 1 0.50401 1 19p loss 0 (0%) 374 0.64867 1 0.68791 1 5.566e-05 0.0461 5.9043e-07 0.00051 0.86711 1 0.68957 1 7.5294e-05 0.0619 0.1159 1 0.0060342 1 0.014327 1 0.023303 1 0.053491 1 19q loss 0 (0%) 421 0.71049 1 0.72164 1 0.00073188 0.563 0.033338 1 0.65849 1 0.35727 1 0.012351 1 0.36079 1 0.012888 1 0.051586 1 0.012633 1 0.06477 1 20p loss 0 (0%) 427 0.19188 1 0.41218 1 7.0237e-05 0.0579 0.014152 1 0.0039881 1 0.015782 1 0.15827 1 0.24341 1 0.79131 1 0.072532 1 0.7902 1 0.89075 1 20q loss 0 (0%) 468 NA NA NA NA 0.087656 1 0.10568 1 0.32479 1 0.3064 1 0.41852 1 0.33318 1 0.63504 1 0.55499 1 0.72213 1 0.60535 1 21q loss 0 (0%) 425 NA NA NA NA 1.3625e-09 1.21e-06 3.6534e-06 0.00309 0.10286 1 0.017555 1 1.4239e-06 0.00122 4.4379e-07 0.000384 3.1081e-05 0.0259 8.05e-07 0.000694 0.0076088 1 3.024e-05 0.0253 22q loss 0 (0%) 396 0.30751 1 0.32108 1 4.2283e-11 3.77e-08 0.00023443 0.187 0.0090911 1 0.010973 1 0.020166 1 0.0074711 1 0.00039775 0.31 0.00182 1 0.0081024 1 0.00034605 0.273 Xq loss 0 (0%) 482 NA NA NA NA 0.47681 1 0.31608 1 0.7403 1 0.57183 1 0.055361 1 0.36283 1 0.79361 1 0.34957 1 0.41135 1 0.27543 1