name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-05-4244-01A-01D-1105-08	589	235	354	189	6.010187e-01	2	all capture (no interval list)	65505363	45	184	6.869667e-07	2.808930e-06
TCGA-05-4249-01A-01D-1105-08	874	385	489	312	5.594966e-01	2	all capture (no interval list)	65505363	73	304	1.114413e-06	4.640841e-06
TCGA-05-4250-01A-01D-1105-08	947	417	530	320	5.596621e-01	2	all capture (no interval list)	65505363	96	312	1.465529e-06	4.762969e-06
TCGA-05-4382-01A-01D-1265-08	3865	1769	2096	1392	5.423027e-01	2	all capture (no interval list)	65505363	371	1381	5.663658e-06	2.108224e-05
TCGA-05-4384-01A-01D-1753-08	374	170	204	131	5.454545e-01	2	all capture (no interval list)	65505363	39	130	5.953711e-07	1.984570e-06
TCGA-05-4389-01A-01D-1265-08	659	318	341	232	5.174507e-01	2	all capture (no interval list)	65505363	86	229	1.312870e-06	3.495897e-06
TCGA-05-4390-01A-02D-1753-08	1471	676	795	534	5.404487e-01	2	all capture (no interval list)	65505363	141	524	2.152496e-06	7.999345e-06
TCGA-05-4395-01A-01D-1265-08	810	315	495	230	6.111111e-01	2	all capture (no interval list)	65505363	81	227	1.236540e-06	3.465365e-06
TCGA-05-4396-01A-21D-1855-08	19105	13923	5182	9223	2.712379e-01	1	exome+100bp flanks	34834024	4668	9133	1.340069e-04	2.621862e-04
TCGA-05-4397-01A-01D-1265-08	2279	944	1335	753	5.857832e-01	2	all capture (no interval list)	65505363	187	739	2.854728e-06	1.128152e-05
TCGA-05-4398-01A-01D-1265-08	2217	963	1254	733	5.656292e-01	2	all capture (no interval list)	65505363	225	717	3.434833e-06	1.094567e-05
TCGA-05-4402-01A-01D-1265-08	379	195	184	152	4.854881e-01	2	all capture (no interval list)	65505363	43	151	6.564348e-07	2.305155e-06
TCGA-05-4403-01A-01D-1265-08	432	176	256	131	5.925926e-01	2	all capture (no interval list)	65505363	44	128	6.717007e-07	1.954038e-06
TCGA-05-4405-01A-21D-1855-08	1078	505	573	384	5.315399e-01	2	all capture (no interval list)	65505363	119	375	1.816645e-06	5.724722e-06
TCGA-05-4410-01A-21D-1855-08	2906	1417	1489	1086	5.123882e-01	2	all capture (no interval list)	65505363	328	1073	5.007224e-06	1.638034e-05
TCGA-05-4415-01A-22D-1855-08	603	257	346	194	5.737977e-01	2	all capture (no interval list)	65505363	62	193	9.464874e-07	2.946324e-06
TCGA-05-4417-01A-22D-1855-08	1109	546	563	404	5.076646e-01	2	all capture (no interval list)	65505363	141	398	2.152496e-06	6.075838e-06
TCGA-05-4418-01A-01D-1265-08	699	328	371	251	5.307582e-01	2	all capture (no interval list)	65505363	73	248	1.114413e-06	3.785950e-06
TCGA-05-4420-01A-01D-1265-08	919	364	555	275	6.039173e-01	2	all capture (no interval list)	65505363	87	272	1.328136e-06	4.152332e-06
TCGA-05-4422-01A-01D-1265-08	194	71	123	52	6.340206e-01	2	all capture (no interval list)	65505363	19	51	2.900526e-07	7.785622e-07
TCGA-05-4424-01A-22D-1855-08	1994	945	1049	739	5.260782e-01	2	all capture (no interval list)	65505363	205	731	3.129515e-06	1.115939e-05
TCGA-05-4425-01A-01D-1753-08	109	47	62	33	5.688073e-01	2	all capture (no interval list)	65505363	14	33	2.137230e-07	5.037755e-07
TCGA-05-4426-01A-01D-1265-08	165	82	83	62	5.030303e-01	2	all capture (no interval list)	65505363	19	61	2.900526e-07	9.312215e-07
TCGA-05-4427-01A-21D-1855-08	2868	1337	1531	1055	5.338215e-01	2	all capture (no interval list)	65505363	279	1036	4.259193e-06	1.581550e-05
TCGA-05-4430-01A-02D-1265-08	801	380	421	297	5.255930e-01	2	all capture (no interval list)	65505363	83	292	1.267072e-06	4.457650e-06
TCGA-05-4432-01A-01D-1265-08	1884	845	1039	637	5.514862e-01	2	all capture (no interval list)	65505363	205	626	3.129515e-06	9.556469e-06
TCGA-05-4433-01A-22D-1855-08	135	62	73	47	5.407407e-01	2	all capture (no interval list)	65505363	15	47	2.289889e-07	7.174985e-07
TCGA-05-4434-01A-01D-1265-08	135	64	71	47	5.259259e-01	2	all capture (no interval list)	65505363	17	46	2.595207e-07	7.022326e-07
TCGA-05-5420-01A-01D-1625-08	218	120	98	93	4.495413e-01	2	all capture (no interval list)	65505363	27	93	4.121800e-07	1.419731e-06
TCGA-05-5423-01A-01D-1625-08	371	179	192	142	5.175202e-01	2	all capture (no interval list)	65505363	37	137	5.648392e-07	2.091432e-06
TCGA-05-5425-01A-02D-1625-08	101	44	57	39	5.643564e-01	2	all capture (no interval list)	65505363	5	38	7.632963e-08	5.801052e-07
TCGA-05-5428-01A-01D-1625-08	1023	447	576	339	5.630499e-01	2	all capture (no interval list)	65505363	106	335	1.618188e-06	5.114085e-06
TCGA-05-5429-01A-01D-1625-08	104	52	52	40	5.000000e-01	2	all capture (no interval list)	65505363	12	40	1.831911e-07	6.106370e-07
TCGA-05-5715-01A-01D-1625-08	333	139	194	104	5.825826e-01	2	all capture (no interval list)	65505363	35	104	5.343074e-07	1.587656e-06
TCGA-17-Z000-01A-01W-0746-08	550	147	403	115	7.327273e-01	2	all capture (no interval list)	65505363	31	115	4.732437e-07	1.755581e-06
TCGA-17-Z001-01A-01W-0746-08	814	247	567	187	6.965602e-01	2	all capture (no interval list)	65505363	59	179	9.006896e-07	2.732601e-06
TCGA-17-Z003-01A-01W-0746-08	853	311	542	239	6.354045e-01	2	all capture (no interval list)	65505363	72	232	1.099147e-06	3.541695e-06
TCGA-17-Z004-01A-01W-0746-08	122	31	91	21	7.459016e-01	2	all capture (no interval list)	65505363	10	20	1.526593e-07	3.053185e-07
TCGA-17-Z005-01A-01W-0746-08	494	117	377	79	7.631579e-01	2	all capture (no interval list)	65505363	37	79	5.648392e-07	1.206008e-06
TCGA-17-Z007-01A-01W-0746-08	588	86	502	63	8.537415e-01	2	all capture (no interval list)	65505363	23	62	3.511163e-07	9.464874e-07
TCGA-17-Z008-01A-01W-0746-08	1013	366	647	281	6.386969e-01	2	all capture (no interval list)	65505363	83	269	1.267072e-06	4.106534e-06
TCGA-17-Z009-01A-01W-0746-08	242	64	178	53	7.355372e-01	2	all capture (no interval list)	65505363	11	53	1.679252e-07	8.090941e-07
TCGA-17-Z010-01A-01W-0746-08	952	331	621	246	6.523109e-01	2	all capture (no interval list)	65505363	81	238	1.236540e-06	3.633290e-06
TCGA-17-Z011-01A-01W-0746-08	440	129	311	98	7.068182e-01	2	all capture (no interval list)	65505363	29	93	4.427118e-07	1.419731e-06
TCGA-17-Z012-01A-01W-0746-08	616	520	96	368	1.558442e-01	1	exome+100bp flanks	34834024	152	367	4.363550e-06	1.053568e-05
TCGA-17-Z013-01A-01W-0746-08	362	74	288	58	7.955801e-01	2	all capture (no interval list)	65505363	15	58	2.289889e-07	8.854237e-07
TCGA-17-Z014-01A-01W-0746-08	1443	436	1007	328	6.978517e-01	2	all capture (no interval list)	65505363	107	319	1.633454e-06	4.869830e-06
TCGA-17-Z015-01A-01W-0746-08	2273	588	1685	470	7.413110e-01	2	all capture (no interval list)	65505363	112	459	1.709784e-06	7.007060e-06
TCGA-17-Z016-01A-01W-0746-08	3600	352	3248	279	9.022222e-01	3	all genome (WGS)	34834024	72	275	2.066945e-06	7.894580e-06
TCGA-17-Z017-01A-01W-0746-08	903	241	662	194	7.331118e-01	2	all capture (no interval list)	65505363	46	189	7.022326e-07	2.885260e-06
TCGA-17-Z018-01A-01W-0746-08	903	281	622	220	6.888151e-01	2	all capture (no interval list)	65505363	60	219	9.159555e-07	3.343238e-06
TCGA-17-Z020-01A-01W-0746-08	617	162	455	125	7.374392e-01	2	all capture (no interval list)	65505363	37	124	5.648392e-07	1.892975e-06
TCGA-17-Z021-01A-01W-0746-08	973	230	743	168	7.636177e-01	2	all capture (no interval list)	65505363	62	162	9.464874e-07	2.473080e-06
TCGA-17-Z022-01A-01W-0746-08	9133	1385	7748	1049	8.483521e-01	2	all capture (no interval list)	65505363	325	1030	4.961426e-06	1.572390e-05
TCGA-17-Z023-01A-01W-0746-08	1391	453	938	366	6.743350e-01	2	all capture (no interval list)	65505363	87	358	1.328136e-06	5.465201e-06
TCGA-17-Z025-01A-01W-0746-08	1675	281	1394	218	8.322388e-01	2	all capture (no interval list)	65505363	63	216	9.617533e-07	3.297440e-06
TCGA-17-Z026-01A-01W-0746-08	3179	1222	1957	925	6.156024e-01	2	all capture (no interval list)	65505363	293	912	4.472916e-06	1.392252e-05
TCGA-17-Z027-01A-01W-0746-08	217	101	116	78	5.345622e-01	2	all capture (no interval list)	65505363	23	78	3.511163e-07	1.190742e-06
TCGA-17-Z028-01A-01W-0746-08	1807	587	1220	460	6.751522e-01	2	all capture (no interval list)	65505363	124	446	1.892975e-06	6.808603e-06
TCGA-17-Z030-01A-01W-0746-08	1894	691	1203	541	6.351637e-01	2	all capture (no interval list)	65505363	150	532	2.289889e-06	8.121472e-06
TCGA-17-Z031-01A-01W-0746-08	11220	2583	8637	2026	7.697861e-01	2	all capture (no interval list)	65505363	544	1987	8.304664e-06	3.033339e-05
TCGA-17-Z032-01A-01W-0746-08	2223	148	2075	105	9.334233e-01	3	all genome (WGS)	34834024	42	104	1.205718e-06	2.985587e-06
TCGA-17-Z033-01A-01W-0746-08	560	204	356	152	6.357143e-01	2	all capture (no interval list)	65505363	51	149	7.785622e-07	2.274623e-06
TCGA-17-Z035-01A-01W-0746-08	204	64	140	46	6.862745e-01	2	all capture (no interval list)	65505363	17	46	2.595207e-07	7.022326e-07
TCGA-17-Z036-01A-01W-0746-08	407	86	321	69	7.886978e-01	2	all capture (no interval list)	65505363	17	67	2.595207e-07	1.022817e-06
TCGA-17-Z037-01A-01W-0746-08	441	172	269	128	6.099773e-01	2	all capture (no interval list)	65505363	42	124	6.411689e-07	1.892975e-06
TCGA-17-Z038-01A-01W-0746-08	192	2	190	1	9.895833e-01	2	all capture (no interval list)	65505363	1	1	1.526593e-08	1.526593e-08
TCGA-17-Z039-01A-01W-0746-08	117	1	116	1	9.914530e-01	2	all capture (no interval list)	65505363	0	1	0	1.526593e-08
TCGA-17-Z040-01A-01W-0746-08	985	121	864	95	8.771574e-01	2	all capture (no interval list)	65505363	26	94	3.969141e-07	1.434997e-06
TCGA-17-Z041-01A-01W-0746-08	1304	80	1224	61	9.386503e-01	3	all genome (WGS)	34834024	18	60	5.167362e-07	1.722454e-06
TCGA-17-Z042-01A-01W-0746-08	1392	549	843	419	6.056034e-01	2	all capture (no interval list)	65505363	125	408	1.908241e-06	6.228498e-06
TCGA-17-Z043-01A-01W-0746-08	818	238	580	178	7.090465e-01	2	all capture (no interval list)	65505363	58	174	8.854237e-07	2.656271e-06
TCGA-17-Z044-01A-01W-0746-08	682	141	541	100	7.932551e-01	2	all capture (no interval list)	65505363	41	97	6.259030e-07	1.480795e-06
TCGA-17-Z045-01A-01W-0746-08	2016	767	1249	593	6.195437e-01	2	all capture (no interval list)	65505363	170	583	2.595207e-06	8.900035e-06
TCGA-17-Z046-01A-01W-0746-08	1555	548	1007	428	6.475884e-01	2	all capture (no interval list)	65505363	119	419	1.816645e-06	6.396423e-06
TCGA-17-Z047-01A-01W-0747-08	101	39	62	29	6.138614e-01	2	all capture (no interval list)	65505363	10	29	1.526593e-07	4.427118e-07
TCGA-17-Z048-01A-01W-0746-08	154	51	103	38	6.688312e-01	2	all capture (no interval list)	65505363	12	37	1.831911e-07	5.648392e-07
TCGA-17-Z049-01A-01W-0746-08	1573	549	1024	429	6.509854e-01	2	all capture (no interval list)	65505363	118	424	1.801379e-06	6.472752e-06
TCGA-17-Z050-01A-01W-0747-08	514	217	297	162	5.778210e-01	2	all capture (no interval list)	65505363	55	158	8.396259e-07	2.412016e-06
TCGA-17-Z051-01A-01W-0747-08	534	154	380	120	7.116105e-01	2	all capture (no interval list)	65505363	34	117	5.190415e-07	1.786113e-06
TCGA-17-Z052-01A-01W-0747-08	370	187	183	143	4.945946e-01	2	all capture (no interval list)	65505363	44	141	6.717007e-07	2.152496e-06
TCGA-17-Z053-01A-01W-0747-08	823	310	513	230	6.233293e-01	2	all capture (no interval list)	65505363	79	227	1.206008e-06	3.465365e-06
TCGA-17-Z054-01A-01W-0747-08	50	13	37	11	7.400000e-01	2	all capture (no interval list)	65505363	2	10	3.053185e-08	1.526593e-07
TCGA-17-Z055-01A-01W-0747-08	2051	964	1087	760	5.299854e-01	2	all capture (no interval list)	65505363	198	750	3.022653e-06	1.144944e-05
TCGA-17-Z056-01A-01W-0747-08	1195	608	587	488	4.912134e-01	2	all capture (no interval list)	65505363	119	481	1.816645e-06	7.342910e-06
TCGA-17-Z057-01A-01W-0747-08	1083	463	620	354	5.724838e-01	2	all capture (no interval list)	65505363	108	352	1.648720e-06	5.373606e-06
TCGA-17-Z058-01A-01W-0747-08	389	96	293	75	7.532134e-01	2	all capture (no interval list)	65505363	21	74	3.205844e-07	1.129678e-06
TCGA-17-Z059-01A-01W-0747-08	430	178	252	140	5.860465e-01	2	all capture (no interval list)	65505363	38	137	5.801052e-07	2.091432e-06
TCGA-17-Z060-01A-01W-0747-08	646	243	403	186	6.238390e-01	2	all capture (no interval list)	65505363	56	175	8.548918e-07	2.671537e-06
TCGA-17-Z061-01A-01W-0747-08	539	201	338	145	6.270872e-01	2	all capture (no interval list)	65505363	56	144	8.548918e-07	2.198293e-06
TCGA-17-Z062-01A-01W-0747-08	1196	559	637	444	5.326087e-01	2	all capture (no interval list)	65505363	114	440	1.740316e-06	6.717007e-06
TCGA-35-3615-01A-01D-1040-01	249	119	130	95	5.220884e-01	2	all capture (no interval list)	65505363	24	93	3.663822e-07	1.419731e-06
TCGA-35-3615-01A-01W-0928-08	319	135	184	106	5.768025e-01	2	all capture (no interval list)	65505363	28	102	4.274459e-07	1.557124e-06
TCGA-35-4122-01A-01D-1105-08	881	409	472	311	5.357548e-01	2	all capture (no interval list)	65505363	97	307	1.480795e-06	4.686639e-06
TCGA-35-4123-01A-01D-1105-08	878	365	513	261	5.842825e-01	2	all capture (no interval list)	65505363	101	258	1.541858e-06	3.938609e-06
TCGA-35-5375-01A-01D-1625-08	1084	484	600	379	5.535055e-01	2	all capture (no interval list)	65505363	102	373	1.557124e-06	5.694190e-06
TCGA-38-4625-01A-01D-1553-08	1682	684	998	535	5.933413e-01	2	all capture (no interval list)	65505363	145	528	2.213559e-06	8.060409e-06
TCGA-38-4626-01A-01D-1553-08	793	404	389	308	4.905422e-01	2	all capture (no interval list)	65505363	95	297	1.450263e-06	4.533980e-06
TCGA-38-4627-01A-01D-1553-08	114	47	67	39	5.877193e-01	2	all capture (no interval list)	65505363	8	39	1.221274e-07	5.953711e-07
TCGA-38-4628-01A-01D-1265-08	360	168	192	133	5.333333e-01	2	all capture (no interval list)	65505363	35	133	5.343074e-07	2.030368e-06
TCGA-38-4629-01A-02D-1265-08	792	331	461	261	5.820707e-01	2	all capture (no interval list)	65505363	70	255	1.068615e-06	3.892811e-06
TCGA-38-4630-01A-01D-1265-08	353	156	197	118	5.580737e-01	2	all capture (no interval list)	65505363	38	116	5.801052e-07	1.770847e-06
TCGA-38-4631-01A-01D-1753-08	2043	903	1140	698	5.580029e-01	2	all capture (no interval list)	65505363	203	689	3.098983e-06	1.051822e-05
TCGA-38-4632-01A-01D-1753-08	1357	624	733	501	5.401621e-01	2	all capture (no interval list)	65505363	119	493	1.816645e-06	7.526101e-06
TCGA-38-6178-01A-11D-1753-08	201	104	97	73	4.825871e-01	2	all capture (no interval list)	65505363	31	73	4.732437e-07	1.114413e-06
TCGA-44-2655-01A-01D-1553-08	535	224	311	167	5.813084e-01	2	all capture (no interval list)	65505363	57	163	8.701578e-07	2.488346e-06
TCGA-44-2655-01A-01W-0928-08	534	241	293	179	5.486891e-01	2	all capture (no interval list)	65505363	62	175	9.464874e-07	2.671537e-06
TCGA-44-2656-01A-02D-0969-08	2237	912	1325	707	5.923111e-01	2	all capture (no interval list)	65505363	203	699	3.098983e-06	1.067088e-05
TCGA-44-2656-01A-02W-0928-08	2063	947	1116	740	5.409598e-01	2	all capture (no interval list)	65505363	207	726	3.160047e-06	1.108306e-05
TCGA-44-2657-01A-01D-1105-08	1164	496	668	376	5.738832e-01	2	all capture (no interval list)	65505363	120	372	1.831911e-06	5.678924e-06
TCGA-44-2659-01A-01D-0969-08	1081	441	640	354	5.920444e-01	2	all capture (no interval list)	65505363	84	349	1.282338e-06	5.327808e-06
TCGA-44-2659-01A-01W-0928-08	1053	468	585	374	5.555556e-01	2	all capture (no interval list)	65505363	92	366	1.404465e-06	5.587329e-06
TCGA-44-2661-01A-01D-1105-08	148	87	61	61	4.121622e-01	2	all capture (no interval list)	65505363	26	59	3.969141e-07	9.006896e-07
TCGA-44-2662-01A-01D-0969-08	583	253	330	187	5.660377e-01	2	all capture (no interval list)	65505363	66	187	1.007551e-06	2.854728e-06
TCGA-44-2662-01A-01W-0928-08	506	253	253	184	5.000000e-01	2	all capture (no interval list)	65505363	67	183	1.022817e-06	2.793664e-06
TCGA-44-2665-01A-01D-1040-01	116	50	66	33	5.689655e-01	2	all capture (no interval list)	65505363	17	32	2.595207e-07	4.885096e-07
TCGA-44-2665-01A-01W-0928-08	165	77	88	55	5.333333e-01	2	all capture (no interval list)	65505363	22	54	3.358504e-07	8.243600e-07
TCGA-44-2666-01A-01D-1489-08	168	56	112	51	6.666667e-01	2	all capture (no interval list)	65505363	5	51	7.632963e-08	7.785622e-07
TCGA-44-2666-01A-01W-0928-08	105	49	56	41	5.333333e-01	2	all capture (no interval list)	65505363	7	41	1.068615e-07	6.259030e-07
TCGA-44-2668-01A-01D-0969-08	1138	458	680	347	5.975395e-01	2	all capture (no interval list)	65505363	107	344	1.633454e-06	5.251478e-06
TCGA-44-2668-01A-01W-0928-08	1021	446	575	335	5.631734e-01	2	all capture (no interval list)	65505363	106	332	1.618188e-06	5.068287e-06
TCGA-44-3396-01A-01D-1265-08	433	215	218	168	5.034642e-01	2	all capture (no interval list)	65505363	47	166	7.174985e-07	2.534144e-06
TCGA-44-3398-01A-01D-1105-08	492	236	256	178	5.203252e-01	2	all capture (no interval list)	65505363	58	177	8.854237e-07	2.702069e-06
TCGA-44-3918-01A-01D-1105-08	2592	1140	1452	915	5.601852e-01	2	all capture (no interval list)	65505363	223	888	3.404301e-06	1.355614e-05
TCGA-44-3919-01A-02D-1105-08	99	36	63	28	6.363636e-01	2	all capture (no interval list)	65505363	8	28	1.221274e-07	4.274459e-07
TCGA-44-3919-01A-02D-1458-08	171	74	97	60	5.672515e-01	2	all capture (no interval list)	65505363	14	60	2.137230e-07	9.159555e-07
TCGA-44-4112-01A-01D-1105-08	1187	512	675	398	5.686605e-01	2	all capture (no interval list)	65505363	112	391	1.709784e-06	5.968977e-06
TCGA-44-4112-01A-01D-1458-08	1221	491	730	379	5.978706e-01	2	all capture (no interval list)	65505363	109	372	1.663986e-06	5.678924e-06
TCGA-44-5643-01A-01D-1625-08	355	158	197	119	5.549296e-01	2	all capture (no interval list)	65505363	38	118	5.801052e-07	1.801379e-06
TCGA-44-5645-01A-01D-1625-08	113	53	60	43	5.309735e-01	2	all capture (no interval list)	65505363	9	42	1.373933e-07	6.411689e-07
TCGA-44-6144-01A-11D-1753-08	619	262	357	200	5.767367e-01	2	all capture (no interval list)	65505363	61	193	9.312215e-07	2.946324e-06
TCGA-44-6145-01A-11D-1753-08	776	360	416	291	5.360825e-01	2	all capture (no interval list)	65505363	68	287	1.038083e-06	4.381321e-06
TCGA-44-6146-01A-11D-1753-08	118	55	63	41	5.338983e-01	2	all capture (no interval list)	65505363	13	41	1.984570e-07	6.259030e-07
TCGA-44-6147-01A-11D-1753-08	517	246	271	169	5.241779e-01	2	all capture (no interval list)	65505363	72	164	1.099147e-06	2.503612e-06
TCGA-44-6148-01A-11D-1753-08	34	17	17	12	5.000000e-01	2	all capture (no interval list)	65505363	5	12	7.632963e-08	1.831911e-07
TCGA-44-6774-01A-21D-1855-08	927	407	520	312	5.609493e-01	2	all capture (no interval list)	65505363	95	308	1.450263e-06	4.701905e-06
TCGA-44-6775-01A-11D-1855-08	283	152	131	111	4.628975e-01	2	all capture (no interval list)	65505363	41	110	6.259030e-07	1.679252e-06
TCGA-44-6776-01A-11D-1855-08	664	251	413	196	6.219880e-01	2	all capture (no interval list)	65505363	52	189	7.938281e-07	2.885260e-06
TCGA-44-6777-01A-11D-1855-08	1240	572	668	436	5.387097e-01	2	all capture (no interval list)	65505363	134	426	2.045634e-06	6.503284e-06
TCGA-44-6778-01A-11D-1855-08	1141	482	659	367	5.775635e-01	2	all capture (no interval list)	65505363	112	358	1.709784e-06	5.465201e-06
TCGA-44-6779-01A-11D-1855-08	414	151	263	119	6.352657e-01	2	all capture (no interval list)	65505363	31	115	4.732437e-07	1.755581e-06
TCGA-49-4486-01A-01D-1265-08	704	349	355	255	5.042614e-01	2	all capture (no interval list)	65505363	90	253	1.373933e-06	3.862279e-06
TCGA-49-4487-01A-21D-1855-08	1039	521	518	410	4.985563e-01	2	all capture (no interval list)	65505363	110	403	1.679252e-06	6.152168e-06
TCGA-49-4488-01A-01D-1753-08	779	341	438	265	5.622593e-01	2	all capture (no interval list)	65505363	75	264	1.144944e-06	4.030204e-06
TCGA-49-4490-01A-21D-1855-08	226	110	116	79	5.132743e-01	2	all capture (no interval list)	65505363	31	77	4.732437e-07	1.175476e-06
TCGA-49-4494-01A-01D-1265-08	570	237	333	184	5.842105e-01	2	all capture (no interval list)	65505363	51	182	7.785622e-07	2.778398e-06
TCGA-49-4501-01A-01D-1265-08	210	111	99	80	4.714286e-01	2	all capture (no interval list)	65505363	31	79	4.732437e-07	1.206008e-06
TCGA-49-4505-01A-01D-1265-08	551	225	326	166	5.916515e-01	2	all capture (no interval list)	65505363	59	164	9.006896e-07	2.503612e-06
TCGA-49-4506-01A-01D-1265-08	364	178	186	144	5.109890e-01	2	all capture (no interval list)	65505363	34	142	5.190415e-07	2.167761e-06
TCGA-49-4507-01A-01D-1265-08	563	250	313	197	5.559503e-01	2	all capture (no interval list)	65505363	53	195	8.090941e-07	2.976855e-06
TCGA-49-4510-01A-01D-1265-08	543	254	289	175	5.322284e-01	2	all capture (no interval list)	65505363	77	173	1.175476e-06	2.641005e-06
TCGA-49-4512-01A-21D-1855-08	182	76	106	54	5.824176e-01	2	all capture (no interval list)	65505363	22	53	3.358504e-07	8.090941e-07
TCGA-49-4514-01A-21D-1855-08	883	401	482	305	5.458664e-01	2	all capture (no interval list)	65505363	96	303	1.465529e-06	4.625575e-06
TCGA-49-6742-01A-11D-1855-08	786	367	419	267	5.330789e-01	2	all capture (no interval list)	65505363	97	266	1.480795e-06	4.060736e-06
TCGA-49-6743-01A-11D-1855-08	2014	969	1045	724	5.188679e-01	2	all capture (no interval list)	65505363	242	714	3.694354e-06	1.089987e-05
TCGA-49-6744-01A-11D-1855-08	676	351	325	274	4.807692e-01	2	all capture (no interval list)	65505363	76	268	1.160210e-06	4.091268e-06
TCGA-49-6745-01A-11D-1855-08	406	198	208	147	5.123153e-01	2	all capture (no interval list)	65505363	50	144	7.632963e-07	2.198293e-06
TCGA-49-6767-01A-11D-1855-08	1310	601	709	442	5.412214e-01	2	all capture (no interval list)	65505363	158	432	2.412016e-06	6.594880e-06
TCGA-50-5044-01A-21D-1855-08	403	219	184	151	4.565757e-01	2	all capture (no interval list)	65505363	67	150	1.022817e-06	2.289889e-06
TCGA-50-5045-01A-01D-1625-08	745	376	369	305	4.953020e-01	2	all capture (no interval list)	65505363	71	300	1.083881e-06	4.579778e-06
TCGA-50-5049-01A-01D-1625-08	1933	1045	888	812	4.593895e-01	2	all capture (no interval list)	65505363	228	804	3.480631e-06	1.227380e-05
TCGA-50-5051-01A-21D-1855-08	501	240	261	170	5.209581e-01	2	all capture (no interval list)	65505363	70	169	1.068615e-06	2.579941e-06
TCGA-50-5055-01A-01D-1625-08	48	24	24	22	5.000000e-01	2	all capture (no interval list)	65505363	2	22	3.053185e-08	3.358504e-07
TCGA-50-5066-01A-01D-1625-08	674	341	333	276	4.940653e-01	2	all capture (no interval list)	65505363	64	273	9.770192e-07	4.167598e-06
TCGA-50-5068-01A-01D-1625-08	231	119	112	90	4.848485e-01	2	all capture (no interval list)	65505363	29	89	4.427118e-07	1.358667e-06
TCGA-50-5072-01A-21D-1855-08	464	217	247	171	5.323276e-01	2	all capture (no interval list)	65505363	43	169	6.564348e-07	2.579941e-06
TCGA-50-5930-01A-11D-1753-08	60	30	30	30	5.000000e-01	2	all capture (no interval list)	65505363	0	29	0	4.427118e-07
TCGA-50-5931-01A-11D-1753-08	857	357	500	283	5.834306e-01	2	all capture (no interval list)	65505363	74	278	1.129678e-06	4.243927e-06
TCGA-50-5932-01A-11D-1753-08	235	89	146	72	6.212766e-01	2	all capture (no interval list)	65505363	15	70	2.289889e-07	1.068615e-06
TCGA-50-5933-01A-11D-1753-08	1328	671	657	519	4.947289e-01	2	all capture (no interval list)	65505363	149	508	2.274623e-06	7.755090e-06
TCGA-50-5935-01A-11D-1753-08	273	144	129	112	4.725275e-01	2	all capture (no interval list)	65505363	32	111	4.885096e-07	1.694518e-06
TCGA-50-5936-01A-11D-1625-08	308	149	159	115	5.162338e-01	2	all capture (no interval list)	65505363	34	114	5.190415e-07	1.740316e-06
TCGA-50-5939-01A-11D-1625-08	223	101	122	81	5.470852e-01	2	all capture (no interval list)	65505363	20	80	3.053185e-07	1.221274e-06
TCGA-50-5941-01A-11D-1753-08	1049	506	543	387	5.176358e-01	2	all capture (no interval list)	65505363	118	384	1.801379e-06	5.862115e-06
TCGA-50-5942-01A-21D-1753-08	167	94	73	71	4.371257e-01	2	all capture (no interval list)	65505363	23	70	3.511163e-07	1.068615e-06
TCGA-50-5944-01A-11D-1753-08	241	83	158	60	6.556017e-01	2	all capture (no interval list)	65505363	23	59	3.511163e-07	9.006896e-07
TCGA-50-5946-01A-11D-1753-08	47	21	26	21	5.531915e-01	2	all capture (no interval list)	65505363	0	21	0	3.205844e-07
TCGA-50-6590-01A-12D-1855-08	2332	1174	1158	914	4.965695e-01	2	all capture (no interval list)	65505363	252	898	3.847013e-06	1.370880e-05
TCGA-50-6591-01A-11D-1753-08	175	87	88	70	5.028571e-01	2	all capture (no interval list)	65505363	17	70	2.595207e-07	1.068615e-06
TCGA-50-6592-01A-11D-1753-08	753	356	397	278	5.272244e-01	2	all capture (no interval list)	65505363	78	274	1.190742e-06	4.182864e-06
TCGA-50-6593-01A-11D-1753-08	753	374	379	281	5.033201e-01	2	all capture (no interval list)	65505363	93	275	1.419731e-06	4.198130e-06
TCGA-50-6594-01A-11D-1753-08	1375	610	765	485	5.563636e-01	2	all capture (no interval list)	65505363	123	480	1.877709e-06	7.327644e-06
TCGA-50-6595-01A-12D-1855-08	282	143	139	114	4.929078e-01	2	all capture (no interval list)	65505363	29	112	4.427118e-07	1.709784e-06
TCGA-50-6597-01A-11D-1855-08	219	102	117	78	5.342466e-01	2	all capture (no interval list)	65505363	24	78	3.663822e-07	1.190742e-06
TCGA-55-1592-01A-01D-0969-08	1384	519	865	408	6.250000e-01	2	all capture (no interval list)	65505363	110	402	1.679252e-06	6.136902e-06
TCGA-55-1592-01A-01W-0928-08	1351	609	742	470	5.492228e-01	2	all capture (no interval list)	65505363	136	463	2.076166e-06	7.068124e-06
TCGA-55-1594-01A-01D-1040-01	425	176	249	131	5.858824e-01	2	all capture (no interval list)	65505363	45	129	6.869667e-07	1.969304e-06
TCGA-55-1594-01A-01W-0928-08	393	195	198	145	5.038168e-01	2	all capture (no interval list)	65505363	50	143	7.632963e-07	2.183027e-06
TCGA-55-1595-01A-01D-0969-08	598	283	315	217	5.267559e-01	2	all capture (no interval list)	65505363	63	217	9.617533e-07	3.312706e-06
TCGA-55-1596-01A-01D-1040-01	461	190	271	154	5.878525e-01	2	all capture (no interval list)	65505363	35	152	5.343074e-07	2.320421e-06
TCGA-55-1596-01A-01W-0928-08	506	215	291	166	5.750988e-01	2	all capture (no interval list)	65505363	46	162	7.022326e-07	2.473080e-06
TCGA-55-5899-01A-11D-1625-08	1202	514	688	392	5.723794e-01	2	all capture (no interval list)	65505363	121	388	1.847177e-06	5.923179e-06
TCGA-55-6543-01A-11D-1753-08	81	36	45	29	5.555556e-01	2	all capture (no interval list)	65505363	6	27	9.159555e-08	4.121800e-07
TCGA-55-6642-01A-11D-1855-08	455	222	233	165	5.120879e-01	2	all capture (no interval list)	65505363	56	159	8.548918e-07	2.427282e-06
TCGA-55-6712-01A-11D-1855-08	590	314	276	206	4.677966e-01	2	all capture (no interval list)	65505363	106	204	1.618188e-06	3.114249e-06
TCGA-64-1676-01A-01D-0969-08	1675	681	994	523	5.934328e-01	2	all capture (no interval list)	65505363	153	520	2.335687e-06	7.938281e-06
TCGA-64-1676-01A-01W-0928-08	1538	652	886	499	5.760728e-01	2	all capture (no interval list)	65505363	149	498	2.274623e-06	7.602431e-06
TCGA-64-1677-01A-01W-0928-08	554	274	280	206	5.054152e-01	2	all capture (no interval list)	65505363	68	203	1.038083e-06	3.098983e-06
TCGA-64-1678-01A-01W-0928-08	1125	492	633	384	5.626667e-01	2	all capture (no interval list)	65505363	106	376	1.618188e-06	5.739988e-06
TCGA-64-1680-01A-02D-0969-08	209	70	139	54	6.650718e-01	2	all capture (no interval list)	65505363	16	54	2.442548e-07	8.243600e-07
TCGA-64-1680-01A-02W-0928-08	132	65	67	49	5.075758e-01	2	all capture (no interval list)	65505363	16	48	2.442548e-07	7.327644e-07
TCGA-64-5774-01A-01D-1625-08	393	171	222	134	5.648855e-01	2	all capture (no interval list)	65505363	37	131	5.648392e-07	1.999836e-06
TCGA-64-5775-01A-01D-1625-08	1289	561	728	430	5.647789e-01	2	all capture (no interval list)	65505363	129	422	1.969304e-06	6.442221e-06
TCGA-64-5778-01A-01D-1625-08	1278	550	728	433	5.696401e-01	2	all capture (no interval list)	65505363	116	426	1.770847e-06	6.503284e-06
TCGA-64-5779-01A-01D-1625-08	967	418	549	328	5.677353e-01	2	all capture (no interval list)	65505363	89	324	1.358667e-06	4.946160e-06
TCGA-64-5781-01A-01D-1625-08	2651	1341	1310	1032	4.941531e-01	2	all capture (no interval list)	65505363	304	1018	4.640841e-06	1.554071e-05
TCGA-64-5815-01A-01D-1625-08	419	211	208	159	4.964200e-01	2	all capture (no interval list)	65505363	52	156	7.938281e-07	2.381484e-06
TCGA-67-3770-01A-01D-0969-08	590	238	352	182	5.966102e-01	2	all capture (no interval list)	65505363	55	180	8.396259e-07	2.747867e-06
TCGA-67-3770-01A-01W-0928-08	565	240	325	185	5.752212e-01	2	all capture (no interval list)	65505363	54	182	8.243600e-07	2.778398e-06
TCGA-67-3771-01A-01D-1040-01	1706	768	938	585	5.498242e-01	2	all capture (no interval list)	65505363	181	579	2.763133e-06	8.838971e-06
TCGA-67-3771-01A-01W-0928-08	2827	1266	1561	973	5.521755e-01	2	all capture (no interval list)	65505363	287	959	4.381321e-06	1.464002e-05
TCGA-67-3772-01A-01W-0928-08	194	93	101	69	5.206186e-01	2	all capture (no interval list)	65505363	24	67	3.663822e-07	1.022817e-06
TCGA-67-3773-01A-01D-1040-01	342	117	225	94	6.578947e-01	2	all capture (no interval list)	65505363	22	91	3.358504e-07	1.389199e-06
TCGA-67-3773-01A-01W-0928-08	291	111	180	89	6.185567e-01	2	all capture (no interval list)	65505363	22	88	3.358504e-07	1.343401e-06
TCGA-67-3774-01A-01D-1040-01	327	125	202	87	6.177370e-01	2	all capture (no interval list)	65505363	35	85	5.343074e-07	1.297604e-06
TCGA-67-3774-01A-01W-0928-08	336	149	187	108	5.565476e-01	2	all capture (no interval list)	65505363	39	106	5.953711e-07	1.618188e-06
TCGA-67-4679-01B-01D-1753-08	769	350	419	271	5.448635e-01	2	all capture (no interval list)	65505363	76	264	1.160210e-06	4.030204e-06
TCGA-67-6215-01A-11D-1753-08	300	150	150	122	5.000000e-01	2	all capture (no interval list)	65505363	28	120	4.274459e-07	1.831911e-06
TCGA-67-6216-01A-11D-1753-08	118	55	63	44	5.338983e-01	2	all capture (no interval list)	65505363	11	43	1.679252e-07	6.564348e-07
TCGA-67-6217-01A-11D-1753-08	427	228	199	182	4.660422e-01	2	all capture (no interval list)	65505363	45	181	6.869667e-07	2.763133e-06
TCGA-71-6725-01A-11D-1855-08	370	201	169	121	4.567568e-01	2	all capture (no interval list)	65505363	79	117	1.206008e-06	1.786113e-06
TCGA-73-4658-01A-01D-1753-08	662	372	290	291	4.380665e-01	2	all capture (no interval list)	65505363	80	288	1.221274e-06	4.396587e-06
TCGA-73-4659-01A-01D-1265-08	642	275	367	204	5.716511e-01	2	all capture (no interval list)	65505363	70	203	1.068615e-06	3.098983e-06
TCGA-73-4662-01A-01D-1265-08	613	281	332	218	5.415987e-01	2	all capture (no interval list)	65505363	63	216	9.617533e-07	3.297440e-06
TCGA-73-4666-01A-01D-1265-08	1129	467	662	352	5.863596e-01	2	all capture (no interval list)	65505363	114	347	1.740316e-06	5.297276e-06
TCGA-73-4668-01A-01D-1265-08	1493	539	954	441	6.389819e-01	2	all capture (no interval list)	65505363	95	431	1.450263e-06	6.579614e-06
TCGA-73-4670-01A-01D-1265-08	1061	421	640	328	6.032045e-01	2	all capture (no interval list)	65505363	91	323	1.389199e-06	4.930894e-06
TCGA-73-4675-01A-01D-1265-08	218	97	121	73	5.550459e-01	2	all capture (no interval list)	65505363	24	73	3.663822e-07	1.114413e-06
TCGA-73-4676-01A-01D-1753-08	255	118	137	87	5.372549e-01	2	all capture (no interval list)	65505363	29	85	4.427118e-07	1.297604e-06
TCGA-73-4677-01A-01D-1265-08	724	301	423	237	5.842541e-01	2	all capture (no interval list)	65505363	62	235	9.464874e-07	3.587493e-06
TCGA-75-5122-01A-01D-1753-08	358	189	169	132	4.720670e-01	2	all capture (no interval list)	65505363	57	129	8.701578e-07	1.969304e-06
TCGA-75-5125-01A-01D-1753-08	443	216	227	168	5.124153e-01	2	all capture (no interval list)	65505363	47	164	7.174985e-07	2.503612e-06
TCGA-75-5126-01A-01D-1753-08	1649	803	846	610	5.130382e-01	2	all capture (no interval list)	65505363	190	603	2.900526e-06	9.205353e-06
TCGA-75-5146-01A-01D-1625-08	515	225	290	172	5.631068e-01	2	all capture (no interval list)	65505363	53	164	8.090941e-07	2.503612e-06
TCGA-75-5147-01A-01D-1625-08	128	57	71	47	5.546875e-01	2	all capture (no interval list)	65505363	10	47	1.526593e-07	7.174985e-07
TCGA-75-6203-01A-11D-1753-08	56	25	31	15	5.535714e-01	2	all capture (no interval list)	65505363	9	15	1.373933e-07	2.289889e-07
TCGA-75-6205-01A-11D-1753-08	105	58	47	49	4.476190e-01	2	all capture (no interval list)	65505363	9	49	1.373933e-07	7.480304e-07
TCGA-75-6206-01A-11D-1753-08	272	104	168	85	6.176471e-01	2	all capture (no interval list)	65505363	19	84	2.900526e-07	1.282338e-06
TCGA-75-6207-01A-11D-1753-08	185	85	100	65	5.405405e-01	2	all capture (no interval list)	65505363	20	64	3.053185e-07	9.770192e-07
TCGA-75-6211-01A-11D-1753-08	893	433	460	348	5.151176e-01	2	all capture (no interval list)	65505363	85	344	1.297604e-06	5.251478e-06
TCGA-75-6212-01A-11D-1753-08	81	32	49	24	6.049383e-01	2	all capture (no interval list)	65505363	8	24	1.221274e-07	3.663822e-07
TCGA-80-5611-01A-01D-1625-08	536	247	289	198	5.391791e-01	2	all capture (no interval list)	65505363	49	192	7.480304e-07	2.931058e-06
TCGA-86-6562-01A-11D-1753-08	181	79	102	63	5.635359e-01	2	all capture (no interval list)	65505363	16	61	2.442548e-07	9.312215e-07
TCGA-91-6828-01A-11D-1855-08	952	441	511	356	5.367647e-01	2	all capture (no interval list)	65505363	84	351	1.282338e-06	5.358340e-06
TCGA-91-6829-01A-21D-1855-08	1809	773	1036	606	5.726921e-01	2	all capture (no interval list)	65505363	166	595	2.534144e-06	9.083226e-06
TCGA-91-6831-01A-11D-1855-08	740	352	388	272	5.243243e-01	2	all capture (no interval list)	65505363	79	265	1.206008e-06	4.045470e-06
TCGA-91-6835-01A-11D-1855-08	268	123	145	92	5.410448e-01	2	all capture (no interval list)	65505363	31	90	4.732437e-07	1.373933e-06
TCGA-91-6836-01A-21D-1855-08	2271	1164	1107	823	4.874505e-01	2	all capture (no interval list)	65505363	333	808	5.083553e-06	1.233487e-05