Molecular subtypes MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 0 (0%) 392 0.7537 1 0.80984 1 0.4678 1 0.23775 1 0.86727 1 0.24709 1 0.36001 1 0.17895 1 0.91871 1 0.87949 1 0.31305 1 0.8628 1 1q gain 0 (0%) 330 0.24182 1 0.23352 1 3.8399e-05 0.0339 0.033168 1 0.48232 1 0.44449 1 0.0027417 1 0.0028547 1 0.020119 1 0.01575 1 0.043957 1 0.1901 1 2p gain 0 (0%) 313 0.031136 1 0.025635 1 6.4212e-14 6.01e-11 1.7573e-05 0.0156 0.065662 1 0.21632 1 0.0002493 0.215 1.4747e-05 0.0132 0.91266 1 0.028524 1 0.0071921 1 0.025846 1 2q gain 0 (0%) 370 0.15148 1 0.10482 1 4.8903e-05 0.0431 0.0091416 1 0.32036 1 0.38707 1 0.00069354 0.585 0.00090563 0.758 0.46324 1 0.22689 1 0.049962 1 0.56107 1 3p gain 0 (0%) 365 0.34247 1 0.39046 1 0.021303 1 0.00040512 0.347 0.65032 1 0.38762 1 0.074035 1 0.069608 1 0.97751 1 0.11082 1 0.32825 1 0.74964 1 3q gain 0 (0%) 223 0.081561 1 0.60202 1 0.00010977 0.0959 0.08065 1 0.48685 1 0.40231 1 0.07561 1 0.3073 1 0.90533 1 0.34386 1 0.47104 1 0.34945 1 4p gain 0 (0%) 402 0.10116 1 0.33866 1 0.042907 1 0.21575 1 0.13225 1 0.46423 1 0.0063224 1 0.010181 1 0.50027 1 0.54652 1 0.74387 1 0.65707 1 4q gain 0 (0%) 408 1 1 0.68337 1 0.063458 1 0.057598 1 NA NA NA NA 0.56842 1 0.10696 1 0.54548 1 0.88105 1 NA NA NA NA 5p gain 0 (0%) 221 0.92276 1 0.44014 1 5.0652e-05 0.0445 0.017353 1 0.33556 1 0.49639 1 0.11232 1 0.29384 1 0.49502 1 0.60259 1 0.3892 1 0.93805 1 5q gain 0 (0%) 372 0.090644 1 0.16509 1 0.10603 1 0.10808 1 0.68738 1 0.65592 1 0.077393 1 0.12426 1 0.50669 1 0.1504 1 0.85499 1 0.85746 1 6p gain 0 (0%) 379 0.00044854 0.382 0.05038 1 0.0022164 1 0.56914 1 0.64273 1 0.27902 1 0.26134 1 0.0077402 1 0.97139 1 0.91622 1 0.54404 1 0.86067 1 6q gain 0 (0%) 391 0.012467 1 0.14581 1 0.00053207 0.452 0.0014805 1 0.72331 1 0.59445 1 0.083587 1 0.019587 1 0.65693 1 0.39931 1 0.0068598 1 0.032038 1 7p gain 0 (0%) 302 0.4497 1 0.27043 1 1.6278e-06 0.00147 0.00097385 0.812 0.73142 1 0.9882 1 0.063911 1 0.0020504 1 0.45103 1 0.037235 1 0.025014 1 0.025503 1 7q gain 0 (0%) 311 0.13983 1 0.06075 1 1.0675e-12 9.97e-10 1.2177e-06 0.00111 0.67861 1 0.76792 1 0.0026098 1 2.3269e-05 0.0207 0.23624 1 0.010364 1 0.0047884 1 0.021307 1 8p gain 0 (0%) 363 0.04238 1 0.071511 1 0.18487 1 0.40278 1 0.73793 1 0.43124 1 0.086792 1 0.003616 1 0.35525 1 0.19026 1 0.27466 1 0.93012 1 8q gain 0 (0%) 295 0.016507 1 0.050228 1 0.0087935 1 0.01026 1 0.81858 1 0.88295 1 0.0069717 1 0.0075798 1 0.041091 1 0.1741 1 0.17363 1 0.8693 1 9p gain 0 (0%) 396 0.53407 1 0.62447 1 0.23891 1 0.82428 1 0.17173 1 0.00021605 0.187 0.089935 1 0.010966 1 0.62482 1 0.28384 1 1 1 0.31486 1 9q gain 0 (0%) 383 0.11259 1 0.082004 1 0.0024232 1 0.018525 1 0.074636 1 0.0021231 1 0.015042 1 0.0060485 1 0.10031 1 0.1213 1 0.15862 1 0.59916 1 10p gain 0 (0%) 392 0.63583 1 1 1 0.067541 1 0.374 1 0.5302 1 0.3894 1 0.58121 1 0.73368 1 0.33237 1 0.5095 1 0.03645 1 0.2122 1 10q gain 0 (0%) 408 NA NA NA NA 0.40109 1 1 1 0.16228 1 0.68423 1 0.27483 1 0.6661 1 1 1 0.63434 1 0.26205 1 0.1265 1 11p gain 0 (0%) 392 0.91668 1 0.57149 1 0.076671 1 0.12007 1 0.39773 1 0.27166 1 0.39214 1 0.11569 1 0.71843 1 0.66111 1 1 1 0.47177 1 11q gain 0 (0%) 389 0.058294 1 0.58086 1 0.043112 1 0.048791 1 0.7732 1 0.37894 1 0.69106 1 0.10835 1 0.92655 1 0.60754 1 0.010902 1 0.37564 1 12p gain 0 (0%) 301 0.048669 1 0.43018 1 5.6382e-07 0.000515 0.13754 1 0.27235 1 0.72316 1 0.02312 1 0.11779 1 0.91801 1 0.28197 1 0.016814 1 0.44597 1 12q gain 0 (0%) 366 0.051465 1 0.51204 1 6.3912e-07 0.000583 0.045489 1 0.24359 1 0.79288 1 0.30384 1 0.032571 1 0.482 1 0.57537 1 0.028197 1 0.18954 1 13q gain 0 (0%) 405 0.70128 1 0.66406 1 0.04884 1 0.51693 1 0.28874 1 0.34943 1 0.6564 1 0.90301 1 0.40547 1 0.91173 1 1 1 0.8594 1 14q gain 0 (0%) 371 0.16621 1 0.6951 1 0.57389 1 0.37555 1 1 1 0.67612 1 0.10982 1 0.41204 1 0.083059 1 0.034844 1 0.94785 1 0.054703 1 15q gain 0 (0%) 376 0.3621 1 0.17761 1 1.3076e-05 0.0117 0.021829 1 0.19324 1 0.11233 1 0.0014833 1 0.073294 1 0.0022795 1 0.0095207 1 0.027622 1 0.0041629 1 16p gain 0 (0%) 400 0.50272 1 1 1 0.000701 0.59 0.5807 1 0.72331 1 0.34116 1 0.58326 1 0.17837 1 0.83213 1 0.8307 1 0.31624 1 0.35475 1 16q gain 0 (0%) 393 0.16206 1 0.23378 1 7.3197e-05 0.0641 0.23775 1 0.4554 1 0.15359 1 0.44119 1 0.95348 1 0.58244 1 0.30225 1 0.40957 1 0.22327 1 17p gain 0 (0%) 405 0.26158 1 0.24107 1 3.3707e-05 0.0298 0.14534 1 0.079326 1 0.20725 1 0.10515 1 0.047587 1 0.0027147 1 0.0047493 1 0.012499 1 0.0022287 1 17q gain 0 (0%) 367 0.0030452 1 0.0005089 0.433 3.0641e-10 2.83e-07 0.00077131 0.649 0.32414 1 0.39354 1 0.00032375 0.278 0.00096346 0.804 0.067292 1 0.01133 1 0.0011711 0.973 0.0053311 1 18p gain 0 (0%) 348 0.00026609 0.229 4.7918e-06 0.00431 4.5806e-08 4.21e-05 0.013712 1 0.13635 1 0.14799 1 0.00043642 0.372 4.9802e-05 0.0438 0.2322 1 0.016511 1 0.018179 1 0.23368 1 18q gain 0 (0%) 371 0.00024886 0.215 0.00031686 0.273 0.00013133 0.115 0.16163 1 0.11281 1 0.046321 1 0.00054194 0.46 0.00090563 0.758 0.087334 1 0.0026318 1 0.027622 1 0.45236 1 19p gain 0 (0%) 376 0.30445 1 0.67093 1 2.6414e-05 0.0234 0.0063858 1 0.0043877 1 0.0039826 1 0.0097194 1 0.0093643 1 0.04496 1 0.20728 1 9.5087e-06 0.00851 0.011191 1 19q gain 0 (0%) 356 0.22862 1 1 1 0.010492 1 0.48994 1 0.16476 1 0.020376 1 0.012895 1 0.0063538 1 0.77772 1 0.89044 1 0.15572 1 0.68125 1 20p gain 0 (0%) 299 0.15034 1 0.069782 1 9.3275e-09 8.6e-06 0.004849 1 0.68384 1 0.19449 1 0.073536 1 0.16064 1 0.19258 1 0.0047726 1 0.40111 1 0.04964 1 20q gain 0 (0%) 312 0.40188 1 0.70766 1 2.6553e-09 2.45e-06 0.075786 1 0.64404 1 0.33121 1 0.022075 1 0.014036 1 0.85962 1 0.082842 1 0.70952 1 0.087098 1 21q gain 0 (0%) 397 0.96899 1 0.30607 1 0.55752 1 0.003142 1 0.52434 1 0.93666 1 0.68714 1 0.51432 1 0.64423 1 0.24528 1 0.26035 1 0.63738 1 22q gain 0 (0%) 315 0.0073913 1 0.0044999 1 3.7727e-07 0.000345 0.0010628 0.885 0.22719 1 0.016673 1 0.010268 1 0.011171 1 0.43357 1 0.0033483 1 0.0021626 1 0.55945 1 Xq gain 0 (0%) 404 0.70128 1 0.58871 1 0.071209 1 0.099454 1 0.45078 1 0.58167 1 0.85819 1 0.12968 1 0.25108 1 0.20352 1 0.036164 1 0.41255 1 1p loss 0 (0%) 356 0.0044719 1 0.0017661 1 2.198e-12 2.05e-09 4.8446e-06 0.00436 0.36254 1 0.036887 1 1.5281e-06 0.00138 1.3421e-06 0.00122 0.35485 1 0.013213 1 0.00065884 0.557 0.28971 1 1q loss 0 (0%) 405 NA NA NA NA 0.13109 1 0.27864 1 0.79944 1 0.32028 1 0.54654 1 1 1 0.91979 1 0.11657 1 0.0087467 1 0.14593 1 2p loss 0 (0%) 413 NA NA NA NA 0.20244 1 NA NA NA NA NA NA 1 1 0.77876 1 NA NA NA NA NA NA NA NA 2q loss 0 (0%) 405 0.81279 1 0.19208 1 0.016894 1 0.16246 1 0.73676 1 0.58167 1 0.25865 1 0.25259 1 0.18828 1 0.44629 1 0.32057 1 1 1 3p loss 0 (0%) 251 0.041738 1 0.47549 1 3.7009e-07 0.000339 1.7162e-05 0.0153 0.40561 1 0.27534 1 0.39917 1 0.0067346 1 0.77989 1 0.57617 1 0.18334 1 0.57146 1 3q loss 0 (0%) 390 0.30167 1 0.59977 1 0.043253 1 0.12007 1 0.70323 1 1 1 0.6912 1 0.12792 1 0.54718 1 1 1 0.022052 1 0.62374 1 4p loss 0 (0%) 244 0.10476 1 0.032923 1 1.6837e-10 1.56e-07 7.5404e-08 6.92e-05 0.053712 1 0.40916 1 0.043286 1 0.011489 1 0.2506 1 0.22497 1 1.9381e-06 0.00175 0.17608 1 4q loss 0 (0%) 265 0.019859 1 0.0056753 1 9.2873e-12 8.64e-09 1.3063e-06 0.00119 0.0082635 1 0.13333 1 5.5074e-05 0.0484 3.9715e-05 0.035 0.19456 1 0.042819 1 1.5913e-05 0.0142 0.049933 1 5p loss 0 (0%) 391 0.14093 1 0.72707 1 0.0044572 1 0.17207 1 0.17035 1 0.35469 1 1 1 1 1 0.80699 1 0.91794 1 0.40671 1 0.64554 1 5q loss 0 (0%) 266 0.2724 1 0.66873 1 2.9425e-10 2.72e-07 2.0749e-08 1.91e-05 0.093882 1 0.17976 1 0.036944 1 0.2927 1 0.30425 1 0.019677 1 0.0055765 1 0.16024 1 6p loss 0 (0%) 379 0.091555 1 0.039089 1 0.00015852 0.138 0.0029757 1 0.07526 1 0.029667 1 0.0026111 1 0.00019486 0.169 0.93744 1 0.82168 1 0.6568 1 0.72557 1 6q loss 0 (0%) 373 0.18932 1 0.077443 1 0.003849 1 0.02764 1 0.088271 1 0.15857 1 0.1117 1 0.046358 1 1 1 0.53207 1 0.54754 1 0.34059 1 7p loss 0 (0%) 392 0.31177 1 0.20778 1 0.00032598 0.28 0.017862 1 0.50358 1 0.1136 1 0.68925 1 0.70979 1 0.23398 1 0.64995 1 0.74604 1 0.64554 1 7q loss 0 (0%) 404 0.35634 1 0.30239 1 0.054526 1 0.51693 1 1 1 0.69605 1 0.073336 1 0.033139 1 0.16909 1 0.18361 1 0.12364 1 1 1 8p loss 0 (0%) 291 0.51403 1 0.98596 1 3.2819e-09 3.03e-06 0.0004608 0.392 0.074954 1 0.77958 1 0.42418 1 0.18547 1 0.41787 1 0.68077 1 0.014599 1 0.55806 1 8q loss 0 (0%) 403 0.13609 1 0.065955 1 0.0023997 1 0.031767 1 0.080133 1 0.28811 1 0.39234 1 0.0040961 1 0.64243 1 0.58905 1 0.21562 1 0.22177 1 9p loss 0 (0%) 244 0.091368 1 0.13338 1 5.573e-19 5.22e-16 8.0062e-08 7.34e-05 0.96575 1 0.39855 1 0.34686 1 0.27775 1 0.5744 1 0.36482 1 0.062364 1 0.19033 1 9q loss 0 (0%) 308 0.0035784 1 0.0021329 1 1.5609e-13 1.46e-10 2.2365e-05 0.0199 0.97828 1 0.31996 1 9.6144e-05 0.0841 5.8636e-05 0.0514 0.13972 1 0.0083648 1 0.069542 1 0.095082 1 10p loss 0 (0%) 323 0.019201 1 0.064321 1 2.4656e-10 2.29e-07 1.4417e-06 0.00131 1 1 0.13227 1 0.00081293 0.683 0.00013093 0.114 0.061627 1 0.00043234 0.369 0.015513 1 0.073688 1 10q loss 0 (0%) 320 0.0031451 1 0.0004167 0.356 5.0538e-12 4.71e-09 7.1802e-06 0.00644 0.26581 1 0.011788 1 0.00023262 0.201 8.8623e-06 0.00794 0.0067557 1 0.00059101 0.501 0.0059947 1 0.12029 1 11p loss 0 (0%) 351 0.063512 1 0.041553 1 1.3029e-06 0.00118 0.00061292 0.519 0.059641 1 0.026473 1 0.0405 1 0.10551 1 0.36497 1 0.52582 1 0.0052705 1 0.094652 1 11q loss 0 (0%) 373 0.31177 1 0.76545 1 2.0793e-06 0.00188 0.003221 1 0.11893 1 0.31521 1 0.016808 1 0.048052 1 0.10644 1 0.27223 1 0.017393 1 0.33245 1 12p loss 0 (0%) 410 NA NA NA NA 0.19435 1 0.069172 1 NA NA NA NA 0.60366 1 0.075411 1 0.34717 1 0.71209 1 0.30311 1 0.66392 1 12q loss 0 (0%) 406 NA NA NA NA 0.61815 1 0.046531 1 0.29227 1 0.38118 1 0.93334 1 0.038461 1 0.2244 1 0.51374 1 0.5293 1 0.3535 1 13q loss 0 (0%) 260 0.12911 1 0.37643 1 1.4254e-10 1.32e-07 0.00018815 0.164 0.14906 1 0.43995 1 0.60907 1 0.56703 1 0.85327 1 0.12301 1 0.076472 1 0.01762 1 14q loss 0 (0%) 344 0.0022995 1 0.025803 1 0.0012128 1 0.012369 1 0.04584 1 0.042167 1 1.0053e-06 0.000916 9.8255e-08 9e-05 0.41247 1 0.27999 1 0.00090383 0.757 2.4774e-05 0.022 15q loss 0 (0%) 370 0.80457 1 0.0098422 1 0.12626 1 0.0083573 1 0.0080068 1 0.0017183 1 0.38976 1 0.040773 1 0.32684 1 0.6083 1 0.40077 1 0.17747 1 16p loss 0 (0%) 352 0.6932 1 0.10482 1 7.0821e-06 0.00636 0.052403 1 0.38783 1 0.3047 1 0.10809 1 0.20681 1 0.68323 1 0.11985 1 0.10953 1 0.19786 1 16q loss 0 (0%) 335 0.16108 1 0.35373 1 0.00019607 0.17 0.007109 1 0.17168 1 0.13181 1 0.072 1 0.0070809 1 0.80182 1 0.0058662 1 0.018197 1 2.9767e-05 0.0263 17p loss 0 (0%) 266 0.067119 1 0.49598 1 2.179e-06 0.00196 0.00069877 0.589 0.010684 1 0.094833 1 0.12444 1 0.14688 1 0.11852 1 0.21398 1 0.4551 1 0.50196 1 17q loss 0 (0%) 389 0.29931 1 0.13491 1 0.0049133 1 0.0075645 1 0.3043 1 0.94292 1 0.031504 1 0.055007 1 0.73763 1 0.70563 1 0.26328 1 0.053082 1 18p loss 0 (0%) 369 0.32992 1 1 1 0.00040139 0.344 0.092379 1 0.23936 1 0.76934 1 0.28624 1 0.19984 1 0.73042 1 0.35932 1 0.9154 1 0.83954 1 18q loss 0 (0%) 336 0.47495 1 0.68868 1 0.00087886 0.737 0.44689 1 0.33542 1 0.82943 1 0.22619 1 0.0090194 1 0.19447 1 0.19979 1 0.27035 1 0.48442 1 19p loss 0 (0%) 349 0.030658 1 0.013757 1 0.00021236 0.184 0.24797 1 0.70796 1 0.86703 1 0.0037626 1 0.014955 1 0.001106 0.92 0.0026494 1 0.39945 1 0.02083 1 19q loss 0 (0%) 371 0.31631 1 0.52768 1 0.035279 1 0.061344 1 0.019108 1 0.092791 1 0.99496 1 0.90219 1 0.10406 1 0.72564 1 0.028197 1 0.50878 1 20p loss 0 (0%) 397 0.20824 1 0.10984 1 0.32371 1 0.2397 1 0.041193 1 0.55514 1 0.58814 1 0.51432 1 0.31053 1 0.43491 1 0.5293 1 0.53743 1 20q loss 0 (0%) 393 0.047261 1 0.026136 1 0.0057844 1 0.092524 1 0.077354 1 0.42857 1 0.0018684 1 0.001497 1 0.54539 1 0.59341 1 0.04189 1 0.59771 1 21q loss 0 (0%) 289 0.018957 1 0.064039 1 1.7463e-12 1.63e-09 5.6111e-08 5.16e-05 0.31758 1 0.24055 1 0.010769 1 0.013352 1 0.10942 1 0.21402 1 0.088057 1 0.43821 1 22q loss 0 (0%) 378 0.072884 1 0.068677 1 0.70034 1 0.3462 1 0.44526 1 0.090423 1 0.50064 1 0.086675 1 0.05897 1 0.11811 1 0.0094268 1 0.030435 1 Xq loss 0 (0%) 399 0.90729 1 0.57041 1 0.27108 1 1 1 0.27702 1 0.00026116 0.225 0.54171 1 0.37313 1 0.057449 1 0.44826 1 0.0386 1 1 1