Molecular subtypes MRNA_CNMF MRNA_CHIERARCHICAL MIR_CNMF MIR_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p gain 0 (0%) 465 0.076735 1 0.096459 1 0.093072 1 0.43621 1 0.33565 1 0.83891 1 0.040032 1 0.33322 1 0.69359 1 0.34382 1 0.1246 1 0.71429 1 0.30602 1 0.45673 1 1q gain 0 (0%) 408 0.44155 1 0.30861 1 0.72753 1 0.56258 1 1.067e-05 0.0116 0.09529 1 0.36512 1 0.79794 1 0.63953 1 0.61931 1 0.20645 1 0.45684 1 0.87551 1 0.51679 1 2p gain 0 (0%) 440 3.7018e-09 4.09e-06 1.7469e-08 1.93e-05 0.61454 1 1.315e-05 0.0142 3.0193e-11 3.35e-08 8.2379e-12 9.17e-09 0.036288 1 0.43918 1 8.6968e-05 0.0933 0.0045651 1 0.42647 1 0.20857 1 0.80051 1 0.25016 1 2q gain 0 (0%) 466 1.2361e-06 0.00135 5.253e-06 0.00572 0.64763 1 0.0025452 1 1.4267e-08 1.58e-05 2.5731e-06 0.00282 0.033757 1 0.32914 1 0.0018348 1 0.0044742 1 0.53464 1 0.48051 1 0.38769 1 0.41427 1 3p gain 0 (0%) 460 0.38957 1 0.64458 1 0.10243 1 0.61945 1 0.0010206 1 0.9015 1 0.20096 1 0.46426 1 0.63314 1 0.88875 1 0.7967 1 0.61775 1 0.76687 1 0.67805 1 3q gain 0 (0%) 361 0.92321 1 0.70782 1 0.73548 1 0.28353 1 1.017e-09 1.13e-06 0.0069516 1 0.44667 1 0.24824 1 0.35198 1 0.67807 1 0.38684 1 0.44891 1 0.11412 1 0.60532 1 4p gain 0 (0%) 538 0.88732 1 0.83629 1 0.0046954 1 0.68829 1 0.087611 1 0.05588 1 0.014865 1 0.45762 1 0.95282 1 0.57286 1 0.27219 1 0.28592 1 0.38861 1 0.046968 1 4q gain 0 (0%) 553 0.89926 1 0.65216 1 0.85314 1 0.93754 1 0.33214 1 0.023082 1 0.020772 1 0.25723 1 0.91311 1 0.58536 1 0.0038492 1 0.047904 1 0.0026196 1 0.016341 1 5p gain 0 (0%) 422 0.48879 1 0.99196 1 0.68772 1 0.48487 1 2.0895e-07 0.00023 0.4281 1 0.59868 1 0.19569 1 0.54422 1 0.90517 1 0.07671 1 0.3 1 0.13746 1 0.10409 1 5q gain 0 (0%) 535 0.033644 1 0.10273 1 0.49887 1 0.356 1 0.59734 1 0.39581 1 0.15656 1 0.58048 1 0.31644 1 0.65844 1 0.038975 1 0.42186 1 0.24357 1 0.10249 1 6p gain 0 (0%) 448 0.51357 1 0.2001 1 0.87307 1 0.021175 1 1.188e-06 0.0013 0.00073637 0.778 0.54553 1 0.74449 1 0.15364 1 0.61917 1 0.29139 1 0.14736 1 0.40193 1 0.16856 1 6q gain 0 (0%) 507 0.73811 1 0.10932 1 0.89614 1 0.039617 1 1.0128e-05 0.011 7.1981e-05 0.0775 0.14014 1 0.85668 1 0.0031371 1 0.35442 1 0.9301 1 0.41641 1 1 1 0.45052 1 7p gain 0 (0%) 444 0.21073 1 0.29816 1 0.045585 1 0.0084301 1 9.1916e-08 0.000101 4.5337e-06 0.00494 0.40729 1 0.15792 1 0.083643 1 0.10863 1 0.94436 1 0.37148 1 0.41664 1 0.46945 1 7q gain 0 (0%) 416 0.10329 1 0.076336 1 0.35304 1 0.35667 1 1.0491e-05 0.0114 0.0014641 1 0.26607 1 0.094383 1 0.17509 1 0.17344 1 0.24028 1 0.49218 1 0.048584 1 0.43886 1 8p gain 0 (0%) 483 0.30282 1 0.014198 1 0.97718 1 0.013128 1 0.26443 1 0.92373 1 0.82971 1 0.23221 1 0.54669 1 0.2315 1 0.57854 1 0.34549 1 0.9709 1 0.52558 1 8q gain 0 (0%) 365 0.16884 1 0.070599 1 0.12828 1 0.088278 1 0.0086994 1 1 1 0.78613 1 0.12478 1 0.0038502 1 0.37985 1 0.81157 1 0.79525 1 0.63206 1 0.77287 1 9p gain 0 (0%) 508 0.044507 1 0.59437 1 0.27997 1 0.31866 1 0.004457 1 0.023487 1 0.17329 1 0.59634 1 0.89614 1 0.58663 1 0.15685 1 0.74769 1 0.85537 1 0.69649 1 9q gain 0 (0%) 542 0.45214 1 0.48549 1 0.10378 1 0.61874 1 0.072618 1 0.22423 1 0.61056 1 0.20794 1 0.8134 1 0.048399 1 0.82915 1 0.73823 1 0.56946 1 0.73793 1 10p gain 0 (0%) 437 0.008443 1 0.043531 1 0.78333 1 0.0076321 1 2.9523e-09 3.27e-06 0.0015418 1 0.2939 1 0.45435 1 0.012621 1 0.86548 1 0.50717 1 0.96254 1 0.12123 1 0.62208 1 10q gain 0 (0%) 501 0.0094683 1 0.025487 1 0.95872 1 0.016563 1 0.013535 1 0.0293 1 0.28258 1 0.51093 1 0.079979 1 0.31168 1 0.38032 1 0.56963 1 0.70647 1 0.70162 1 11p gain 0 (0%) 529 0.26776 1 0.23869 1 0.2234 1 0.33989 1 0.042977 1 0.016787 1 0.022531 1 0.0044087 1 0.042674 1 0.28394 1 0.12078 1 0.18341 1 0.26701 1 0.16265 1 11q gain 0 (0%) 507 0.36871 1 0.63364 1 0.9401 1 0.012474 1 7.9231e-05 0.0851 0.00075149 0.793 0.36933 1 0.45147 1 0.57713 1 0.22077 1 0.28109 1 0.43587 1 0.48818 1 0.40322 1 12p gain 0 (0%) 361 3.2469e-05 0.035 1.1296e-05 0.0122 0.30575 1 4.4576e-05 0.0481 4.2687e-13 4.76e-10 1.2373e-07 0.000136 0.36228 1 0.82455 1 1.464e-05 0.0158 0.00033023 0.351 0.18326 1 0.19382 1 0.090399 1 0.064195 1 12q gain 0 (0%) 447 0.00039542 0.42 8.6608e-06 0.00941 0.53326 1 0.0020373 1 1.221e-14 1.36e-11 3.9972e-06 0.00437 0.0093259 1 0.6627 1 0.00073145 0.773 0.002353 1 0.1021 1 0.11896 1 0.044234 1 0.076239 1 13q gain 0 (0%) 528 0.040256 1 0.074946 1 0.88927 1 0.0017428 1 0.0058752 1 9.2692e-05 0.0993 0.82864 1 0.33561 1 0.4509 1 0.94867 1 0.28906 1 0.61843 1 0.94287 1 0.62015 1 14q gain 0 (0%) 535 0.0097843 1 0.036762 1 0.34817 1 0.054636 1 0.97456 1 0.19962 1 0.064406 1 0.0097759 1 0.27288 1 0.036228 1 0.46011 1 0.64157 1 0.55407 1 0.64278 1 15q gain 0 (0%) 544 0.42454 1 0.41182 1 0.33659 1 0.45908 1 0.26953 1 0.66185 1 0.16581 1 0.82401 1 1 1 1 1 0.63843 1 0.54036 1 0.85538 1 0.54237 1 16p gain 0 (0%) 538 0.032861 1 0.031053 1 0.91941 1 0.3552 1 0.14897 1 0.3242 1 0.67479 1 0.10145 1 1 1 1 1 0.9259 1 0.51254 1 0.41656 1 0.60964 1 16q gain 0 (0%) 553 0.016882 1 0.25272 1 0.21931 1 0.49092 1 0.59746 1 0.039197 1 0.51217 1 0.12387 1 NA NA NA NA 0.11882 1 0.26851 1 0.12812 1 0.27051 1 17p gain 0 (0%) 558 0.39669 1 0.36108 1 0.50862 1 0.27029 1 0.063978 1 0.43482 1 0.4141 1 0.79496 1 0.35173 1 0.63157 1 0.58019 1 0.36479 1 0.40784 1 0.36792 1 17q gain 0 (0%) 546 0.78806 1 0.69732 1 0.27071 1 0.24493 1 0.070509 1 0.33936 1 0.50852 1 0.92151 1 0.59097 1 0.68348 1 0.69524 1 0.46579 1 0.82605 1 0.46984 1 18p gain 0 (0%) 495 0.0085 1 0.0075844 1 0.85151 1 0.15672 1 0.0014729 1 0.00034944 0.371 0.0028287 1 0.073145 1 0.52655 1 0.61144 1 0.27146 1 0.58921 1 0.059364 1 0.67509 1 18q gain 0 (0%) 528 0.29409 1 0.39791 1 0.53139 1 0.56478 1 0.041953 1 0.063986 1 0.20572 1 0.45416 1 0.61417 1 0.43977 1 0.13648 1 0.79183 1 0.039542 1 0.7913 1 19p gain 0 (0%) 470 0.016318 1 0.025252 1 0.66379 1 0.19156 1 1.9503e-08 2.15e-05 0.00084354 0.887 0.015067 1 0.23515 1 0.74126 1 0.82177 1 0.67697 1 0.3114 1 0.76992 1 0.076343 1 19q gain 0 (0%) 477 0.012456 1 0.045473 1 0.62351 1 0.15994 1 6.8452e-07 0.000752 0.0024934 1 0.024237 1 0.26626 1 0.5578 1 0.52494 1 0.32769 1 0.21699 1 0.2698 1 0.039739 1 20p gain 0 (0%) 335 0.001658 1 0.0016137 1 0.20654 1 4.0831e-06 0.00446 3.867e-15 4.32e-12 3.6756e-10 4.08e-07 0.32174 1 0.57179 1 0.0037546 1 0.14405 1 0.56911 1 1 1 0.87765 1 0.68578 1 20q gain 0 (0%) 296 1.0246e-05 0.0111 9.0936e-05 0.0975 0.49653 1 1.6007e-06 0.00175 3.3043e-20 3.69e-17 2.0932e-14 2.33e-11 0.45641 1 0.17546 1 0.0032992 1 0.3947 1 0.35065 1 0.87726 1 0.73321 1 0.52154 1 21q gain 0 (0%) 499 0.50376 1 0.19834 1 0.98582 1 0.90641 1 7.0682e-06 0.00769 0.00054422 0.577 0.2896 1 0.25904 1 0.37056 1 0.17061 1 0.23062 1 0.68336 1 0.17614 1 0.3323 1 22q gain 0 (0%) 560 0.32006 1 0.098302 1 0.69186 1 0.64053 1 0.20458 1 0.83991 1 0.60354 1 0.70144 1 0.83266 1 1 1 0.043254 1 0.47395 1 0.0052688 1 0.32436 1 Xq gain 0 (0%) 535 0.20893 1 0.29791 1 0.94929 1 0.60331 1 0.013886 1 0.089199 1 0.090381 1 0.32809 1 0.39338 1 0.4998 1 0.20333 1 0.76711 1 0.021587 1 0.76899 1 1p loss 0 (0%) 534 0.0043765 1 0.021521 1 0.28424 1 0.49019 1 0.77922 1 0.17824 1 0.50324 1 0.51377 1 0.73621 1 0.36082 1 1 1 1 1 0.24478 1 1 1 1q loss 0 (0%) 547 0.017628 1 0.015387 1 0.0041224 1 0.34687 1 0.33664 1 0.4601 1 0.64762 1 0.18907 1 0.79644 1 0.096428 1 0.3288 1 0.84338 1 0.35992 1 1 1 2p loss 0 (0%) 543 0.78653 1 0.78722 1 0.90496 1 0.18135 1 0.57155 1 0.69779 1 0.33212 1 0.58514 1 0.17823 1 0.29035 1 0.83336 1 0.22889 1 0.60554 1 0.87064 1 2q loss 0 (0%) 539 0.836 1 0.50121 1 0.81572 1 0.085826 1 0.53022 1 0.27599 1 0.28727 1 0.66814 1 0.54632 1 0.24334 1 0.67592 1 0.10933 1 0.51758 1 0.49072 1 3p loss 0 (0%) 508 0.048654 1 0.095917 1 0.92473 1 0.04757 1 0.0046852 1 0.1839 1 0.86993 1 0.24993 1 0.018136 1 0.45827 1 0.19387 1 0.534 1 0.76084 1 0.45297 1 3q loss 0 (0%) 546 0.1793 1 0.19595 1 0.96379 1 0.18181 1 0.19779 1 0.39583 1 0.59221 1 0.60643 1 0.080309 1 0.27615 1 0.48902 1 0.68426 1 0.94811 1 0.68272 1 4p loss 0 (0%) 307 0.15857 1 0.41611 1 0.5163 1 0.023611 1 0.031235 1 0.97667 1 0.15459 1 0.17682 1 0.15212 1 0.29226 1 0.034353 1 0.010381 1 0.052793 1 0.016777 1 4q loss 0 (0%) 267 0.082941 1 0.26542 1 0.26936 1 0.014675 1 0.010102 1 0.76748 1 0.28585 1 0.092452 1 0.46976 1 0.03565 1 0.047057 1 0.00025273 0.269 0.041321 1 0.00081983 0.864 5p loss 0 (0%) 484 0.40464 1 0.21607 1 0.18841 1 0.16226 1 0.012893 1 0.014371 1 0.20395 1 0.15561 1 0.00040668 0.431 0.56173 1 0.91868 1 0.69874 1 0.942 1 0.70029 1 5q loss 0 (0%) 397 0.00013594 0.145 0.0043089 1 0.65511 1 0.0013784 1 0.00017345 0.185 1.5068e-07 0.000166 0.0084335 1 0.060411 1 0.00066396 0.702 0.28447 1 0.5329 1 0.59495 1 0.52848 1 0.63702 1 6p loss 0 (0%) 443 0.79188 1 0.44216 1 0.71601 1 0.79378 1 0.19037 1 0.12537 1 0.21208 1 0.40748 1 0.47979 1 0.79656 1 0.18022 1 1 1 0.084097 1 1 1 6q loss 0 (0%) 371 0.9797 1 0.54182 1 0.82934 1 0.84428 1 0.079046 1 0.032218 1 0.098587 1 0.65295 1 0.12425 1 0.19354 1 0.21101 1 0.8119 1 0.26414 1 0.89112 1 7p loss 0 (0%) 478 0.90274 1 0.29922 1 0.18447 1 0.30391 1 0.074611 1 0.14324 1 0.38224 1 0.76663 1 0.94356 1 0.034714 1 0.025898 1 0.71828 1 0.18861 1 0.61214 1 7q loss 0 (0%) 521 0.83927 1 0.67725 1 0.43114 1 0.65245 1 0.26734 1 0.023765 1 0.34938 1 0.7556 1 0.57884 1 0.21966 1 0.053667 1 0.83667 1 0.055743 1 1 1 8p loss 0 (0%) 334 0.73085 1 0.78978 1 0.45352 1 0.8599 1 0.0015057 1 0.042569 1 0.19909 1 0.3505 1 0.34002 1 0.91397 1 0.47139 1 0.19113 1 0.83363 1 0.21483 1 8q loss 0 (0%) 506 0.070683 1 0.36492 1 0.20143 1 0.36886 1 0.0020727 1 0.072893 1 0.076626 1 0.48452 1 0.039285 1 0.04403 1 0.78856 1 0.38041 1 0.95918 1 0.38046 1 9p loss 0 (0%) 357 0.0021674 1 0.0075329 1 0.73673 1 0.060265 1 0.029692 1 0.00055425 0.587 0.67382 1 0.97575 1 0.56685 1 0.13376 1 0.040209 1 0.3305 1 0.23629 1 0.28747 1 9q loss 0 (0%) 329 0.0025714 1 0.0016164 1 0.14181 1 0.0065078 1 1.5109e-11 1.68e-08 0.00082703 0.871 0.653 1 0.88138 1 0.0027623 1 0.21167 1 0.10882 1 0.030881 1 0.2037 1 0.028281 1 10p loss 0 (0%) 502 0.49861 1 0.86007 1 0.3277 1 0.80588 1 0.89459 1 0.53176 1 0.19336 1 0.20523 1 0.96423 1 0.6594 1 0.1094 1 0.61294 1 0.53932 1 0.45052 1 10q loss 0 (0%) 479 0.76414 1 0.21816 1 0.099402 1 0.79852 1 0.1176 1 0.37641 1 0.25929 1 0.22741 1 0.76289 1 0.26 1 0.29786 1 0.21837 1 1 1 0.8261 1 11p loss 0 (0%) 423 0.010523 1 0.0025254 1 0.096389 1 0.26223 1 0.081567 1 0.0097764 1 0.55809 1 0.13329 1 0.021253 1 0.68689 1 0.78732 1 0.80869 1 0.10145 1 0.3214 1 11q loss 0 (0%) 461 0.14041 1 0.056717 1 0.013464 1 0.25784 1 0.18677 1 0.062428 1 0.82182 1 0.079117 1 0.073346 1 0.79656 1 0.29526 1 0.13697 1 0.065306 1 0.16916 1 12p loss 0 (0%) 518 0.38271 1 0.19283 1 1 1 0.11972 1 0.0081152 1 0.41609 1 0.97102 1 0.059675 1 0.29621 1 0.43977 1 0.59089 1 0.27694 1 0.45265 1 0.22759 1 12q loss 0 (0%) 493 0.15286 1 0.010891 1 0.38899 1 0.27697 1 0.0027435 1 0.14751 1 0.83859 1 0.26609 1 0.14854 1 0.016182 1 0.42131 1 0.33484 1 0.57002 1 0.067207 1 13q loss 0 (0%) 307 0.068929 1 0.040883 1 0.90684 1 0.068734 1 0.00085663 0.9 4.3571e-06 0.00475 0.0029906 1 0.0043609 1 0.29707 1 0.98503 1 0.41785 1 0.89627 1 0.088083 1 0.87301 1 14q loss 0 (0%) 405 0.13333 1 0.022308 1 0.87522 1 0.91732 1 0.00011814 0.126 0.038106 1 0.96636 1 0.47856 1 0.045438 1 0.55716 1 0.4301 1 0.35573 1 0.16274 1 0.42223 1 15q loss 0 (0%) 349 0.0017339 1 0.0028147 1 0.0009143 0.96 0.0034965 1 7.1736e-11 7.96e-08 7.7011e-05 0.0828 0.88355 1 0.88461 1 0.024465 1 0.44881 1 0.0063776 1 0.37541 1 0.092557 1 0.46658 1 16p loss 0 (0%) 298 0.88878 1 0.84614 1 0.19619 1 0.67708 1 0.027512 1 0.060255 1 0.96419 1 0.9312 1 0.35305 1 0.6109 1 0.27125 1 0.56098 1 0.65579 1 0.56184 1 16q loss 0 (0%) 209 0.85855 1 0.79847 1 0.040993 1 0.36236 1 0.02634 1 0.057437 1 0.73291 1 0.97296 1 0.49213 1 0.81181 1 0.2686 1 0.082632 1 0.091934 1 0.074181 1 17p loss 0 (0%) 140 0.19925 1 0.0070389 1 0.89112 1 0.54515 1 0.2429 1 0.031496 1 0.52534 1 0.17806 1 0.29504 1 0.11924 1 0.33909 1 0.41755 1 0.38397 1 0.62408 1 17q loss 0 (0%) 237 0.035081 1 0.0017495 1 0.024557 1 0.66305 1 0.59676 1 0.15572 1 0.18766 1 0.12744 1 0.12763 1 0.10867 1 0.0073363 1 0.28762 1 0.0048902 1 0.37415 1 18p loss 0 (0%) 382 0.68435 1 0.89411 1 0.33033 1 0.41337 1 0.21552 1 0.010899 1 0.94108 1 0.23955 1 0.01799 1 0.20641 1 0.88053 1 0.91722 1 0.7045 1 0.38814 1 18q loss 0 (0%) 333 0.13535 1 0.21058 1 0.69971 1 0.60843 1 0.84525 1 0.40166 1 0.96308 1 0.13963 1 0.0028468 1 0.10282 1 0.66878 1 0.46685 1 0.46771 1 0.32523 1 19p loss 0 (0%) 424 0.56554 1 0.12549 1 0.15174 1 0.22455 1 0.17896 1 0.091572 1 0.027013 1 0.1077 1 0.4664 1 0.71031 1 0.90746 1 0.77834 1 0.61681 1 0.96526 1 19q loss 0 (0%) 424 0.13108 1 0.033297 1 0.31453 1 0.29572 1 0.27754 1 0.61935 1 0.070625 1 0.36267 1 1 1 0.87081 1 0.20091 1 0.31323 1 0.27927 1 0.77379 1 20p loss 0 (0%) 531 0.30875 1 0.33504 1 0.62489 1 0.3615 1 0.17171 1 0.16263 1 0.65678 1 0.44681 1 0.020756 1 0.075894 1 0.011573 1 0.89061 1 0.055134 1 0.68754 1 20q loss 0 (0%) 547 0.44992 1 0.95934 1 0.2757 1 0.73726 1 0.51769 1 0.70839 1 0.35183 1 0.26939 1 0.2454 1 0.6249 1 0.24834 1 1 1 0.44176 1 0.56601 1 21q loss 0 (0%) 418 0.34658 1 0.14455 1 0.31 1 0.063403 1 0.7934 1 0.037638 1 0.28555 1 0.38666 1 0.46045 1 0.56346 1 0.4644 1 0.96584 1 0.19102 1 1 1 22q loss 0 (0%) 182 4.516e-05 0.0486 0.00012776 0.137 0.055997 1 0.036336 1 0.0001765 0.188 0.0085167 1 0.039487 1 0.10113 1 0.080624 1 0.19052 1 0.0027861 1 0.38953 1 0.0051092 1 0.50098 1 Xq loss 0 (0%) 468 0.12087 1 0.25593 1 0.036319 1 0.1501 1 0.085128 1 0.19448 1 1 1 0.46578 1 0.29467 1 0.82155 1 0.97526 1 0.38371 1 0.84175 1 0.40406 1