Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p34.3)	0 (0%)	287	0.33002	1	0.42401	1	0.14802	1	0.13377	1	2.7226e-06	0.00252	0.23183	1	0.12133	1	0.7837	1	0.60208	1	0.1044	1	0.069358	1	0.092226	1	0.082567	1	0.26531	1
Amp Peak  2(1q21.3)	0 (0%)	213	0.20131	1	0.19311	1	0.68689	1	0.14998	1	1.5206e-11	1.45e-08	0.00054737	0.486	0.06009	1	0.0099903	1	0.62753	1	0.27957	1	0.91555	1	0.97204	1	0.43558	1	0.9172	1
Amp Peak  3(1q42.2)	0 (0%)	257	0.042175	1	0.051039	1	0.94062	1	0.0062983	1	5.9842e-09	5.63e-06	3.3636e-05	0.0307	0.27927	1	0.20673	1	0.61994	1	0.41838	1	0.18305	1	0.26977	1	0.42051	1	0.27094	1
Amp Peak  4(2p23.2)	0 (0%)	330	0.33996	1	0.42835	1	0.58209	1	0.013476	1	5.7201e-09	5.39e-06	0.0063992	1	0.2232	1	0.65841	1	0.031553	1	0.75122	1	0.91142	1	0.11482	1	0.7889	1	0.16348	1
Amp Peak  5(2q31.2)	0 (0%)	319	0.064888	1	0.066727	1	0.0744	1	0.051974	1	2.1842e-11	2.08e-08	0.0051147	1	0.057514	1	0.50728	1	0.22903	1	0.52213	1	0.4562	1	0.66373	1	0.37708	1	0.66473	1
Amp Peak  6(3q26.2)	0 (0%)	96	0.013397	1	0.0059776	1	0.90705	1	0.43828	1	2.9029e-11	2.75e-08	0.036062	1	0.55374	1	0.55333	1	0.016628	1	0.046345	1	0.12268	1	0.43241	1	0.59136	1	0.36811	1
Amp Peak  7(4p16.3)	0 (0%)	413	0.96931	1	0.31113	1	0.051823	1	0.69357	1	4.242e-05	0.0386	0.018267	1	0.24406	1	0.76876	1	0.7495	1	0.45544	1	0.6437	1	0.66442	1	0.78055	1	0.76276	1
Amp Peak  8(4q13.3)	0 (0%)	463	0.86825	1	0.87772	1	0.35395	1	0.17499	1	1.0636e-05	0.00982	0.38462	1	0.31225	1	0.14892	1	0.14795	1	0.93527	1	0.97634	1	0.10761	1	0.96277	1	0.40847	1
Amp Peak  9(5p15.33)	0 (0%)	270	0.91112	1	0.98772	1	0.62525	1	0.54024	1	1.3349e-07	0.000125	0.084727	1	0.98199	1	0.4769	1	0.17489	1	0.92737	1	0.013829	1	0.43615	1	0.16791	1	0.41368	1
Amp Peak 10(6p22.3)	0 (0%)	278	0.16354	1	0.070279	1	0.24948	1	0.15576	1	1.591e-08	1.49e-05	0.088781	1	0.0709	1	0.052988	1	0.83343	1	0.070896	1	0.30352	1	0.43388	1	0.27695	1	0.49492	1
Amp Peak 11(7q36.3)	0 (0%)	265	0.098362	1	0.090213	1	0.26209	1	0.58806	1	1.2541e-05	0.0115	0.24434	1	0.068269	1	0.24191	1	0.96189	1	0.76385	1	0.1648	1	0.14332	1	0.12064	1	0.18824	1
Amp Peak 12(8p11.21)	0 (0%)	367	0.043675	1	0.02881	1	0.10195	1	0.29233	1	3.4979e-07	0.000326	0.02005	1	0.036499	1	0.26168	1	0.35177	1	0.21615	1	0.90478	1	0.67237	1	0.83867	1	0.78935	1
Amp Peak 13(8q24.21)	0 (0%)	122	1.1238e-07	0.000105	1.2257e-05	0.0113	0.2293	1	0.0031325	1	2.3054e-17	2.22e-14	0.0041745	1	0.9599	1	0.59521	1	4.5152e-07	0.00042	2.4637e-05	0.0226	0.14209	1	0.040558	1	0.15044	1	0.11378	1
Amp Peak 14(10p15.3)	0 (0%)	328	0.86466	1	0.58511	1	0.069816	1	0.25513	1	2.5047e-12	2.4e-09	0.00014903	0.134	0.56203	1	0.40842	1	0.34409	1	0.30582	1	0.46509	1	0.94504	1	0.7637	1	0.89264	1
Amp Peak 15(10q22.3)	0 (0%)	393	0.48784	1	0.39724	1	0.60684	1	0.060093	1	0.28461	1	0.75514	1	0.52683	1	0.9776	1	0.074943	1	0.33248	1	0.11244	1	0.15069	1	0.63769	1	0.48249	1
Amp Peak 16(11q14.1)	0 (0%)	318	0.0034461	1	0.032372	1	0.84677	1	0.29353	1	5.3096e-09	5.01e-06	0.0099324	1	0.60018	1	0.22203	1	0.0037819	1	0.0040494	1	0.20461	1	0.82698	1	0.13206	1	0.82736	1
Amp Peak 17(12p13.33)	0 (0%)	251	0.038451	1	0.14095	1	0.28986	1	0.010819	1	9.976e-11	9.46e-08	0.00022032	0.198	0.31408	1	0.61446	1	0.012405	1	0.13745	1	0.31956	1	0.9209	1	0.68526	1	0.46206	1
Amp Peak 18(12p12.1)	0 (0%)	268	0.24562	1	0.10936	1	0.84309	1	0.096781	1	1.6345e-13	1.57e-10	4.8819e-05	0.0444	0.81857	1	0.49251	1	0.021381	1	0.13261	1	0.20164	1	0.69951	1	0.4876	1	0.50746	1
Amp Peak 19(14q11.2)	0 (0%)	425	0.0090475	1	0.023895	1	0.32258	1	0.0014517	1	0.039303	1	0.15408	1	0.393	1	0.28794	1	0.25505	1	0.33311	1	0.2343	1	0.33494	1	0.13479	1	0.18643	1
Amp Peak 20(14q32.33)	0 (0%)	418	0.37971	1	0.42207	1	0.19844	1	0.82309	1	0.00027805	0.249	0.32746	1	1	1	0.67109	1	0.18485	1	0.57834	1	0.50815	1	0.7803	1	0.55848	1	0.36957	1
Amp Peak 21(15q26.3)	0 (0%)	412	0.069557	1	0.25793	1	0.50348	1	0.68926	1	2.4238e-09	2.29e-06	0.70341	1	0.97809	1	0.25265	1	0.15745	1	0.94533	1	0.11883	1	0.36343	1	0.18239	1	0.26509	1
Amp Peak 22(17q25.3)	0 (0%)	362	0.4367	1	0.71684	1	0.91254	1	0.12259	1	0.0057268	1	0.75214	1	0.093596	1	0.11207	1	0.016232	1	0.024064	1	0.4061	1	0.16901	1	0.13394	1	0.041415	1
Amp Peak 23(18q11.2)	0 (0%)	430	0.94325	1	0.86827	1	0.9758	1	0.52659	1	3.4025e-07	0.000317	0.0054764	1	0.20545	1	0.45327	1	0.042716	1	0.10889	1	0.31304	1	0.82502	1	0.45273	1	0.62762	1
Amp Peak 24(19p13.12)	0 (0%)	263	0.00047395	0.421	3.2202e-07	3e-04	0.046053	1	0.052014	1	1.0223e-13	9.83e-11	2.6064e-06	0.00241	0.00066159	0.584	0.0037834	1	0.21537	1	0.26956	1	0.48203	1	0.59549	1	0.92264	1	0.61255	1
Amp Peak 25(19q12)	0 (0%)	255	0.14775	1	0.0060767	1	0.040171	1	0.1472	1	2.2467e-29	2.17e-26	1.2772e-09	1.21e-06	0.080336	1	0.82035	1	0.5507	1	0.85952	1	0.33501	1	0.59597	1	0.81059	1	0.63067	1
Amp Peak 26(19q13.2)	0 (0%)	331	0.99366	1	0.85909	1	0.65425	1	0.30736	1	6.201e-12	5.93e-09	0.00016199	0.146	0.45652	1	0.38234	1	0.45755	1	0.98471	1	1	1	0.3794	1	0.83631	1	0.35828	1
Amp Peak 27(20p13)	0 (0%)	259	0.44412	1	0.058206	1	0.13274	1	0.030225	1	1.4286e-11	1.36e-08	2.9658e-05	0.0271	0.32141	1	0.97078	1	0.071585	1	0.6862	1	0.24165	1	0.89627	1	0.076394	1	0.87301	1
Amp Peak 28(20q11.21)	0 (0%)	237	0.0032826	1	0.0018054	1	0.1845	1	0.00010511	0.0951	2.6142e-24	2.52e-21	2.8963e-11	2.75e-08	0.14036	1	0.039225	1	0.00013753	0.124	0.59878	1	0.5432	1	0.25099	1	0.67795	1	0.60818	1
Amp Peak 29(20q13.33)	0 (0%)	177	0.0078199	1	0.017508	1	0.59895	1	0.0032562	1	6.6608e-18	6.42e-15	1.6603e-06	0.00154	0.89923	1	0.56042	1	0.0080012	1	0.79319	1	0.4765	1	0.60408	1	0.65933	1	0.32241	1
Amp Peak 30(22q12.2)	0 (0%)	481	0.69786	1	0.5806	1	0.083599	1	0.35916	1	0.0018704	1	0.0010387	0.912	1	1	0.057451	1	0.098624	1	0.195	1	0.10137	1	0.011408	1	0.068071	1	0.022167	1
Amp Peak 31(Xp11.23)	0 (0%)	406	0.83549	1	0.48782	1	0.29798	1	0.30833	1	7.15e-06	0.00661	0.00042568	0.38	0.70289	1	0.2224	1	0.28613	1	0.2156	1	0.36494	1	0.87915	1	0.56561	1	0.62924	1
Amp Peak 32(Xq28)	0 (0%)	345	0.13592	1	0.27697	1	0.83206	1	0.11732	1	4.7302e-05	0.043	0.10278	1	0.35856	1	0.7908	1	0.5486	1	0.4349	1	0.91696	1	0.011929	1	0.9278	1	0.13478	1
Del Peak  1(1p36.11)	0 (0%)	304	0.82499	1	0.73397	1	0.038525	1	0.32565	1	1.878e-06	0.00174	0.088918	1	0.18884	1	0.41581	1	0.96084	1	0.80721	1	0.22128	1	0.14443	1	0.22546	1	0.38812	1
Del Peak  2(1q32.3)	0 (0%)	474	0.079283	1	0.59561	1	0.47661	1	0.11027	1	3.0534e-07	0.000285	0.34192	1	0.78069	1	0.10493	1	0.11541	1	0.33037	1	0.897	1	0.56961	1	1	1	0.50898	1
Del Peak  3(2p25.3)	0 (0%)	451	0.94578	1	0.9817	1	0.45398	1	0.48882	1	0.34526	1	0.6765	1	0.14867	1	0.11212	1	0.050061	1	0.73405	1	0.90478	1	0.50594	1	0.68585	1	0.54833	1
Del Peak  4(2q22.1)	0 (0%)	435	0.086223	1	0.22467	1	0.86688	1	0.15013	1	0.032741	1	0.51599	1	0.28134	1	0.70968	1	0.98287	1	0.35733	1	0.56696	1	0.57438	1	0.4331	1	0.27456	1
Del Peak  5(2q37.3)	0 (0%)	395	0.022686	1	0.038133	1	0.61168	1	0.0016975	1	3.6027e-05	0.0329	0.10804	1	0.72491	1	0.89364	1	0.01988	1	0.028864	1	0.01865	1	0.012482	1	0.062351	1	0.0053557	1
Del Peak  6(3p26.2)	0 (0%)	359	0.12671	1	0.101	1	0.0041237	1	0.022196	1	6.4695e-05	0.0587	0.00035548	0.318	0.96999	1	0.094852	1	0.0031158	1	0.67425	1	0.62801	1	0.61119	1	1	1	0.54518	1
Del Peak  7(4q22.1)	0 (0%)	186	0.039908	1	0.10981	1	0.92746	1	0.0096555	1	0.075146	1	0.35875	1	0.059333	1	0.0090796	1	0.10929	1	0.42446	1	0.19509	1	0.0073341	1	0.057156	1	0.073048	1
Del Peak  8(4q34.3)	0 (0%)	157	0.031905	1	0.026587	1	0.022166	1	0.013417	1	0.28284	1	0.56049	1	0.4294	1	0.21123	1	0.08514	1	0.030251	1	0.33715	1	0.17663	1	0.052165	1	0.54435	1
Del Peak  9(5q11.2)	0 (0%)	228	0.89625	1	0.48674	1	0.42478	1	0.20625	1	4.6927e-08	4.4e-05	0.00066435	0.586	0.73119	1	0.85153	1	0.1817	1	0.12795	1	0.034107	1	0.00055831	0.495	0.037319	1	0.0021876	1
Del Peak 10(5q13.2)	0 (0%)	163	0.61681	1	0.43982	1	0.8876	1	0.80891	1	2.0685e-12	1.98e-09	0.093577	1	0.76159	1	0.82409	1	0.3536	1	0.0030253	1	0.12125	1	0.0088524	1	0.20335	1	0.030869	1
Del Peak 11(6q27)	0 (0%)	188	0.15121	1	0.021387	1	0.34563	1	0.016375	1	3.8553e-09	3.64e-06	2.5597e-05	0.0235	0.42773	1	0.91712	1	2.6855e-05	0.0246	0.24953	1	0.4568	1	0.94464	1	0.52592	1	0.51164	1
Del Peak 12(7p22.1)	0 (0%)	322	0.34898	1	0.66502	1	0.67779	1	0.65962	1	2.7779e-13	2.67e-10	0.64283	1	0.80093	1	0.78182	1	0.28221	1	0.10438	1	0.32752	1	0.56375	1	0.29488	1	0.41211	1
Del Peak 13(8p23.3)	0 (0%)	188	0.057889	1	0.27512	1	0.62934	1	0.018522	1	1.1027e-11	1.05e-08	0.039478	1	0.87324	1	0.61599	1	0.89476	1	0.60024	1	0.23462	1	0.15946	1	0.31129	1	0.11469	1
Del Peak 14(8p21.2)	0 (0%)	171	0.038493	1	0.41683	1	0.23329	1	0.0095627	1	1.1027e-08	1.04e-05	0.10878	1	0.79353	1	0.84768	1	0.36021	1	0.25	1	0.54086	1	0.48426	1	0.61449	1	0.48557	1
Del Peak 15(9p24.3)	0 (0%)	314	0.00042676	0.38	0.013955	1	0.77196	1	0.0091386	1	0.021681	1	0.00011851	0.107	0.45165	1	0.59747	1	0.072551	1	0.074551	1	0.087932	1	0.13694	1	0.15246	1	0.1941	1
Del Peak 16(9q34.13)	0 (0%)	232	0.022309	1	0.02187	1	1	1	0.018812	1	2.9376e-07	0.000275	0.033819	1	0.34379	1	0.37086	1	0.27207	1	1	1	0.03707	1	0.099525	1	0.092443	1	0.069743	1
Del Peak 17(10p15.3)	0 (0%)	448	0.14082	1	0.062294	1	0.096768	1	0.086514	1	0.072144	1	0.28346	1	0.28282	1	0.068751	1	0.014455	1	0.060723	1	0.25458	1	0.33814	1	0.10987	1	0.11728	1
Del Peak 18(10q23.31)	0 (0%)	349	0.35098	1	0.054442	1	0.00055605	0.493	0.012485	1	0.00024672	0.221	0.0019041	1	0.036002	1	0.012118	1	0.96084	1	0.50205	1	0.073452	1	0.38278	1	0.39629	1	0.42123	1
Del Peak 19(10q26.3)	0 (0%)	380	0.0048674	1	0.00060187	0.533	0.2502	1	0.40473	1	1.0801e-05	0.00996	0.12955	1	0.0924	1	0.01349	1	0.060288	1	0.12159	1	0.016338	1	0.22053	1	0.15118	1	0.14217	1
Del Peak 20(11p15.5)	0 (0%)	231	0.10739	1	0.45105	1	0.72854	1	0.047678	1	6.7563e-12	6.46e-09	0.0088235	1	0.96331	1	0.59561	1	0.71737	1	0.272	1	0.12946	1	0.023987	1	0.14491	1	0.036251	1
Del Peak 21(11q25)	0 (0%)	374	0.71502	1	0.64128	1	0.17489	1	0.38042	1	0.095652	1	0.53137	1	0.31973	1	0.17519	1	0.93094	1	0.87676	1	0.5974	1	0.13818	1	0.73536	1	0.08594	1
Del Peak 22(12q24.33)	0 (0%)	352	0.0008092	0.712	0.00010646	0.0962	0.21571	1	0.089147	1	4.8348e-10	4.58e-07	0.020626	1	0.3814	1	0.50179	1	0.069961	1	0.0031356	1	0.017165	1	0.0056917	1	0.088458	1	0.0066766	1
Del Peak 23(13q14.2)	0 (0%)	214	0.0090851	1	0.018392	1	0.72294	1	0.68348	1	1.2874e-06	0.0012	3.306e-05	0.0302	0.0014027	1	0.00080734	0.711	0.09885	1	0.25006	1	0.37539	1	0.89057	1	0.029337	1	0.75106	1
Del Peak 24(14q23.3)	0 (0%)	271	0.11148	1	0.64043	1	0.8278	1	0.85386	1	0.00014293	0.129	0.56214	1	0.18481	1	0.24683	1	0.85595	1	0.20068	1	0.8034	1	0.66168	1	0.66034	1	0.76281	1
Del Peak 25(15q15.1)	0 (0%)	212	0.044558	1	0.014335	1	0.011088	1	0.0062633	1	2.2791e-11	2.17e-08	1.9562e-05	0.018	0.12115	1	0.045597	1	0.01805	1	0.76761	1	0.46434	1	0.67584	1	0.37234	1	0.67581	1
Del Peak 26(16p13.3)	0 (0%)	266	0.55412	1	0.11031	1	0.16686	1	0.46168	1	0.061994	1	0.4903	1	0.92114	1	0.23886	1	0.50761	1	0.78608	1	0.20404	1	0.85155	1	0.54936	1	0.85181	1
Del Peak 27(16q22.1)	0 (0%)	118	0.4702	1	0.70943	1	0.030269	1	0.92458	1	0.00031587	0.283	0.68259	1	0.55204	1	0.35943	1	0.30349	1	0.30528	1	0.41225	1	0.12574	1	0.07188	1	0.10379	1
Del Peak 28(16q23.1)	0 (0%)	127	0.091563	1	0.19696	1	0.14294	1	0.32006	1	5.0993e-05	0.0463	0.60305	1	0.6021	1	0.92483	1	0.39459	1	0.44854	1	0.08924	1	0.039284	1	0.028798	1	0.028155	1
Del Peak 29(17p12)	0 (0%)	88	0.20184	1	0.20792	1	0.61934	1	0.59075	1	0.9356	1	0.39981	1	0.93821	1	0.36217	1	0.1874	1	0.51545	1	0.61003	1	0.62084	1	0.59371	1	0.47323	1
Del Peak 30(17q11.2)	0 (0%)	103	0.91127	1	0.12909	1	0.73465	1	0.47727	1	0.00062559	0.553	0.0011614	1	0.76734	1	0.066573	1	0.37712	1	0.57142	1	0.20232	1	0.56529	1	0.28186	1	0.4758	1
Del Peak 31(18q23)	0 (0%)	196	1	1	0.9865	1	0.18805	1	0.4338	1	0.0059356	1	0.28496	1	0.22796	1	0.275	1	0.21987	1	0.3983	1	0.68926	1	0.68941	1	0.26811	1	0.17384	1
Del Peak 32(19p13.3)	0 (0%)	67	0.21351	1	0.0093355	1	0.9433	1	0.46179	1	0.0012376	1	0.043822	1	0.59172	1	0.22869	1	0.33265	1	0.015723	1	0.47594	1	0.85014	1	0.53129	1	1	1
Del Peak 33(19q13.33)	0 (0%)	274	0.00043709	0.389	0.00038094	0.34	0.063421	1	0.13786	1	0.028619	1	0.0026208	1	0.034225	1	0.21418	1	0.0078351	1	0.084428	1	0.25918	1	0.15122	1	0.26802	1	0.18811	1
Del Peak 34(19q13.43)	0 (0%)	289	0.016634	1	0.002403	1	0.078916	1	0.15686	1	0.00081579	0.717	6.9468e-05	0.0629	0.17832	1	0.27795	1	0.5553	1	0.15411	1	0.52674	1	0.45469	1	0.60025	1	0.57757	1
Del Peak 35(21q22.3)	0 (0%)	348	0.31855	1	0.48094	1	0.70456	1	0.24109	1	0.78253	1	0.28515	1	0.57876	1	0.62599	1	0.18866	1	0.27222	1	0.73978	1	0.65237	1	0.53225	1	0.53336	1
Del Peak 36(22q13.32)	0 (0%)	76	0.10815	1	0.033037	1	0.022884	1	0.071725	1	0.0080462	1	0.15124	1	0.071142	1	0.34908	1	0.068042	1	0.17968	1	0.023586	1	0.29558	1	0.013278	1	0.42895	1
Del Peak 37(Xp21.1)	0 (0%)	205	0.33197	1	0.71684	1	0.11993	1	0.64288	1	0.10031	1	0.025044	1	0.32266	1	0.043386	1	0.90769	1	0.40881	1	0.93591	1	0.42976	1	0.57626	1	0.40481	1