Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p34.3)	0 (0%)	44	0.050423	1	0.35764	1	1	1	0.74553	1	0.9827	1	0.82834	1	1	1	0.82834	1
Amp Peak  2(1p12)	0 (0%)	41	0.018446	1	0.10356	1	0.66424	1	0.82833	1	0.047888	1	0.62054	1	1	1	0.62054	1
Amp Peak  3(7q22.1)	0 (0%)	36	0.045689	1	0.00085012	0.204	0.13277	1	0.08506	1	0.044111	1	0.25697	1	0.033858	1	0.25697	1
Amp Peak  4(8q24.21)	0 (0%)	29	0.00069416	0.169	0.048428	1	0.21643	1	0.0038072	0.872	0.50061	1	0.30111	1	0.066585	1	0.14401	1
Amp Peak  5(9p13.3)	0 (0%)	44	0.010975	1	0.54723	1	0.34511	1	0.48164	1	0.19766	1	0.24896	1	0.34487	1	0.24896	1
Amp Peak  6(12p13.33)	0 (0%)	41	2.7859e-06	0.000772	0.012896	1	0.18555	1	0.034125	1	0.22659	1	0.084732	1	0.045948	1	0.084732	1
Amp Peak  7(12p12.1)	0 (0%)	41	0.00032728	0.0812	0.012896	1	0.021206	1	0.034125	1	0.087734	1	0.056165	1	0.0089009	1	0.056165	1
Amp Peak  8(18q11.2)	0 (0%)	36	3.6154e-05	0.00969	0.023127	1	0.088785	1	0.013631	1	0.063003	1	0.01382	1	0.088339	1	0.01382	1
Amp Peak  9(20q13.2)	0 (0%)	36	0.00015709	0.0404	0.39363	1	0.72086	1	0.23121	1	0.7925	1	0.4665	1	0.31015	1	0.4665	1
Amp Peak 10(Xp22.11)	0 (0%)	47	0.76857	1	0.77725	1	1	1	NA	NA	0.78346	1	0.59161	1	0.60692	1	0.59161	1
Amp Peak 11(Xq27.1)	0 (0%)	44	0.036468	1	0.74929	1	0.1723	1	0.79972	1	0.63412	1	0.72896	1	1	1	0.72896	1
Del Peak  1(1p36.22)	0 (0%)	37	0.0012378	0.293	0.0041438	0.932	0.094802	1	0.10409	1	0.073153	1	0.036725	1	0.13239	1	0.11405	1
Del Peak  2(1p21.2)	0 (0%)	39	5.6369e-06	0.00154	0.037173	1	0.41242	1	0.10409	1	0.13517	1	0.036725	1	0.02125	1	0.11405	1
Del Peak  3(4p12)	0 (0%)	45	0.010532	1	0.12988	1	0.1079	1	0.18358	1	0.35295	1	0.063706	1	0.10777	1	0.063706	1
Del Peak  4(5q14.2)	0 (0%)	41	0.0071668	1	0.89839	1	1	1	0.82833	1	0.97875	1	0.88655	1	0.24044	1	0.88655	1
Del Peak  5(6p25.2)	0 (0%)	29	0.00013898	0.036	4.5889e-05	0.0122	0.027009	1	0.0012597	0.297	0.04542	1	0.22309	1	0.061778	1	0.059693	1
Del Peak  6(6p22.3)	0 (0%)	30	0.00029972	0.0746	0.00013568	0.0353	0.0098157	1	0.0039508	0.897	0.064844	1	0.11021	1	0.026752	1	0.032858	1
Del Peak  7(6q22.33)	0 (0%)	24	3.7373e-05	0.00998	2.9946e-06	0.000827	0.00016828	0.0429	2.9782e-05	0.00804	0.00042289	0.104	0.00049735	0.122	0.00020298	0.0512	2.162e-05	0.00586
Del Peak  8(7q36.1)	0 (0%)	45	0.021746	1	0.057519	1	0.1079	1	0.18358	1	0.10849	1	0.51518	1	0.10777	1	0.51518	1
Del Peak  9(8p23.1)	0 (0%)	35	4.995e-05	0.0132	0.00085948	0.205	0.015813	1	0.00078616	0.189	0.004666	1	0.0034982	0.808	0.00019595	0.0496	0.0034982	0.808
Del Peak 10(8q12.1)	0 (0%)	47	0.14286	1	0.34102	1	1	1	1	1	0.78346	1	0.41658	1	1	1	0.41658	1
Del Peak 11(9p21.3)	0 (0%)	20	2.6406e-07	7.37e-05	4.8442e-06	0.00133	0.025263	1	9.1742e-06	0.0025	0.0097094	1	0.0030117	0.702	0.00020298	0.0512	0.00023391	0.0585
Del Peak 12(9p13.2)	0 (0%)	31	0.013638	1	0.11737	1	0.51059	1	0.11567	1	0.32013	1	0.40895	1	0.10399	1	0.40895	1
Del Peak 13(10q23.2)	0 (0%)	38	0.00015937	0.0408	0.11104	1	0.24086	1	0.053504	1	0.2546	1	0.01553	1	0.068882	1	0.01553	1
Del Peak 14(11p15.4)	0 (0%)	40	0.0066138	1	0.4021	1	0.69836	1	0.25352	1	0.55587	1	0.52773	1	0.24044	1	0.52773	1
Del Peak 15(12p12.3)	0 (0%)	42	0.010857	1	0.0025421	0.597	0.048597	1	0.060464	1	0.087579	1	0.0075552	1	0.02114	1	0.0075552	1
Del Peak 16(12q12)	0 (0%)	41	0.0045646	1	3.2687e-05	0.00879	0.094802	1	0.010118	1	0.17153	1	0.056165	1	0.094572	1	0.056165	1
Del Peak 17(12q24.32)	0 (0%)	34	0.00076885	0.186	0.012762	1	0.0039233	0.895	0.00075923	0.184	0.058874	1	0.01382	1	6.1321e-05	0.0162	0.01382	1
Del Peak 18(15q15.1)	0 (0%)	40	7.8984e-05	0.0207	0.089548	1	0.41242	1	0.10409	1	0.33124	1	0.11405	1	0.13239	1	0.11405	1
Del Peak 19(17p11.2)	0 (0%)	31	0.00019101	0.0485	2.7706e-06	0.00077	0.021878	1	6.2048e-05	0.0163	0.068724	1	0.065966	1	0.0040494	0.915	0.019702	1
Del Peak 20(17q23.2)	0 (0%)	35	0.00010615	0.0277	0.00015109	0.039	0.034056	1	0.0029749	0.696	0.021497	1	0.0095544	1	0.00056721	0.139	0.0095544	1
Del Peak 21(18q21.2)	0 (0%)	18	0.00091834	0.219	0.0033373	0.774	0.19649	1	0.0070497	1	0.11428	1	0.07254	1	0.030536	1	0.026387	1
Del Peak 22(21q22.11)	0 (0%)	31	0.022574	1	0.3339	1	0.045516	1	0.030125	1	0.18739	1	0.029017	1	0.021695	1	0.098578	1
Del Peak 23(22q13.31)	0 (0%)	36	0.007083	1	0.065634	1	0.28116	1	0.066991	1	0.1671	1	0.031695	1	0.16228	1	0.031695	1
Del Peak 24(Xq21.1)	0 (0%)	43	9.1306e-06	0.00249	0.017994	1	1	1	0.48164	1	0.17428	1	0.39621	1	0.18528	1	0.39621	1