Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q21.3)	0 (0%)	175	0.014312	1	0.31128	1	0.14449	1	0.12356	1	0.22953	1	0.52105	1	0.024325	1	1	1
Amp Peak  2(3q26.2)	0 (0%)	160	0.00029969	0.101	0.45332	1	0.3046	1	0.49455	1	0.46168	1	0.22022	1	0.21033	1	0.23972	1
Amp Peak  3(7p15.3)	0 (0%)	152	3.4954e-06	0.00123	0.044734	1	0.0078537	1	0.013544	1	0.39388	1	0.87608	1	0.25525	1	0.2199	1
Amp Peak  4(7q34)	0 (0%)	155	0.00015848	0.0539	0.014128	1	0.0017861	0.57	0.00096923	0.316	0.23685	1	0.75212	1	0.35272	1	0.24678	1
Amp Peak  5(8p11.22)	0 (0%)	170	1.4353e-05	0.00504	0.14913	1	0.050773	1	0.26818	1	0.25806	1	0.38594	1	0.12793	1	0.86031	1
Amp Peak  6(8q21.13)	0 (0%)	141	4.818e-10	1.77e-07	0.00064759	0.214	0.0013714	0.444	0.0078444	1	0.071695	1	0.0448	1	0.085676	1	0.73711	1
Amp Peak  7(11q13.2)	0 (0%)	176	0.00049453	0.165	0.44546	1	0.19262	1	0.35527	1	0.84242	1	0.6197	1	0.67493	1	0.80202	1
Amp Peak  8(12q24.32)	0 (0%)	180	0.0020729	0.657	0.47386	1	0.89399	1	0.18343	1	0.89495	1	0.85703	1	0.29679	1	0.21079	1
Amp Peak  9(14q21.1)	0 (0%)	177	0.033321	1	0.0053216	1	0.0090479	1	0.51824	1	0.24089	1	0.20315	1	0.47045	1	0.10936	1
Amp Peak 10(20q13.33)	0 (0%)	175	0.0057462	1	0.00093607	0.306	0.011845	1	0.0095596	1	0.67185	1	0.071103	1	0.093058	1	1	1
Amp Peak 11(21q21.3)	0 (0%)	180	0.032325	1	0.21497	1	0.21799	1	0.2878	1	0.45541	1	0.53387	1	0.80185	1	0.52995	1
Amp Peak 12(Xp22.11)	0 (0%)	182	0.3632	1	0.67116	1	0.73985	1	0.60613	1	0.6538	1	0.089196	1	0.15847	1	0.12158	1
Amp Peak 13(Xp22.11)	0 (0%)	182	0.72561	1	0.35084	1	1	1	0.73503	1	0.54503	1	0.39327	1	0.29348	1	0.70047	1
Amp Peak 14(Xp21.1)	0 (0%)	183	0.6796	1	0.079385	1	1	1	1	1	0.39034	1	0.50712	1	0.81674	1	0.39611	1
Amp Peak 15(Xq12)	0 (0%)	183	0.27765	1	0.48643	1	0.063709	1	0.020985	1	0.59254	1	0.38685	1	0.65728	1	0.6557	1
Amp Peak 16(Xq21.1)	0 (0%)	180	0.38966	1	0.21497	1	0.19947	1	0.23374	1	0.77631	1	0.40816	1	0.66337	1	0.36117	1
Amp Peak 17(Xq21.1)	0 (0%)	182	0.3632	1	0.12197	1	0.52864	1	0.33157	1	0.81988	1	0.71606	1	0.56845	1	1	1
Amp Peak 18(Xq21.31)	0 (0%)	182	0.1391	1	0.47609	1	0.3245	1	0.1381	1	0.93725	1	0.85297	1	0.60727	1	0.70047	1
Amp Peak 19(Xq25)	0 (0%)	183	0.049746	1	0.58252	1	0.39144	1	0.17266	1	0.31687	1	0.17213	1	0.060562	1	0.19765	1
Amp Peak 20(Xq25)	0 (0%)	181	1	1	0.072534	1	0.11797	1	0.4998	1	0.54011	1	0.26914	1	0.46844	1	0.49196	1
Amp Peak 21(Xq27.1)	0 (0%)	178	0.0066631	1	0.62437	1	0.83459	1	0.83055	1	0.029561	1	0.034531	1	0.012092	1	0.0098814	1
Del Peak  1(1p31.3)	0 (0%)	165	0.043939	1	0.00040756	0.136	0.0016936	0.542	0.0045759	1	0.026163	1	0.51326	1	0.22636	1	0.29081	1
Del Peak  2(1p21.3)	0 (0%)	171	0.009446	1	0.64826	1	0.94463	1	1	1	0.44602	1	0.60874	1	0.1941	1	0.16319	1
Del Peak  3(1q23.1)	0 (0%)	179	0.09595	1	0.13782	1	0.1356	1	0.11069	1	0.091576	1	0.042187	1	0.27916	1	0.13627	1
Del Peak  4(1q42.13)	0 (0%)	169	0.44828	1	0.097315	1	0.73036	1	0.80713	1	0.84994	1	0.53403	1	0.48053	1	1	1
Del Peak  5(2q22.1)	0 (0%)	165	6.0071e-05	0.0207	0.029559	1	0.10959	1	0.033031	1	0.026163	1	0.00026622	0.0897	0.0033991	1	0.015281	1
Del Peak  6(3p13)	0 (0%)	159	0.66804	1	0.033586	1	0.29377	1	0.030178	1	0.19279	1	0.85642	1	0.43269	1	0.10575	1
Del Peak  7(3q29)	0 (0%)	175	0.76761	1	0.068881	1	0.069436	1	0.022892	1	0.85104	1	0.85453	1	0.6178	1	0.52971	1
Del Peak  8(4q28.2)	0 (0%)	170	0.00021547	0.0728	0.013107	1	0.014889	1	0.09425	1	0.15786	1	0.14448	1	0.20491	1	0.16319	1
Del Peak  9(5q11.2)	0 (0%)	157	2.6312e-07	9.45e-05	0.0014576	0.471	0.090147	1	0.043301	1	0.079255	1	0.58959	1	0.010781	1	0.7732	1
Del Peak 10(5q21.1)	0 (0%)	154	9.4247e-12	3.49e-09	0.0010384	0.337	0.0026924	0.848	0.0073726	1	0.18216	1	0.41997	1	0.0082952	1	0.61804	1
Del Peak 11(6q15)	0 (0%)	128	2.585e-18	9.72e-16	2.1629e-08	7.83e-06	1.1317e-06	0.000403	3.9087e-05	0.0136	4.6434e-05	0.0161	0.032537	1	0.0044079	1	0.2836	1
Del Peak 12(7q36.1)	0 (0%)	178	0.38223	1	0.13902	1	0.59632	1	0.48307	1	0.289	1	0.48088	1	0.52296	1	0.78368	1
Del Peak 13(8p21.3)	0 (0%)	79	1.6813e-08	6.1e-06	2.2804e-06	0.000805	6.8297e-05	0.0234	0.00016443	0.0557	0.013255	1	0.30397	1	2.5458e-05	0.00891	0.074134	1
Del Peak 14(8p11.21)	0 (0%)	128	0.012424	1	3.1492e-05	0.011	0.00091333	0.3	0.016389	1	0.36085	1	0.93344	1	0.01586	1	0.51115	1
Del Peak 15(9p22.3)	0 (0%)	172	0.00059935	0.199	0.49676	1	0.21617	1	0.26793	1	0.61504	1	1	1	0.75893	1	1	1
Del Peak 16(10q23.31)	0 (0%)	122	7.2733e-07	0.00026	2.1173e-07	7.62e-05	4.7234e-08	1.71e-05	1.0049e-06	0.000359	0.018861	1	0.11524	1	0.0019198	0.61	0.42308	1
Del Peak 17(11q23.2)	0 (0%)	164	0.062878	1	0.48238	1	0.87703	1	0.91563	1	0.096559	1	0.34634	1	0.25779	1	0.89722	1
Del Peak 18(12p13.2)	0 (0%)	148	7.0959e-05	0.0243	0.016099	1	0.56234	1	0.096324	1	0.30686	1	0.36091	1	0.00062871	0.208	0.88058	1
Del Peak 19(13q14.13)	0 (0%)	104	0.00031975	0.107	0.0044914	1	0.0014688	0.473	0.0047778	1	0.4117	1	0.5343	1	0.03995	1	0.63107	1
Del Peak 20(16q24.1)	0 (0%)	113	3.3265e-10	1.22e-07	0.0009003	0.296	0.022765	1	0.015816	1	0.0023043	0.728	0.027743	1	0.012301	1	0.35472	1
Del Peak 21(17p13.1)	0 (0%)	141	2.13e-09	7.75e-07	0.053961	1	0.028444	1	0.0041085	1	0.32788	1	0.24195	1	0.0086971	1	0.73711	1
Del Peak 22(17q21.31)	0 (0%)	151	0.0069749	1	0.00011649	0.0397	2.6e-05	0.00907	5.5431e-05	0.0191	0.059362	1	0.21145	1	0.1028	1	0.49524	1
Del Peak 23(18q22.1)	0 (0%)	141	7.8623e-10	2.87e-07	0.098295	1	0.19551	1	0.44884	1	0.13623	1	0.21538	1	0.3368	1	0.29752	1
Del Peak 24(18q23)	0 (0%)	135	7.3901e-14	2.77e-11	0.062321	1	0.065401	1	0.13646	1	0.231	1	0.79867	1	0.33565	1	0.67549	1
Del Peak 25(21q22.2)	0 (0%)	126	1.944e-06	0.000688	1.2997e-12	4.85e-10	6.5932e-10	2.41e-07	1.9112e-12	7.11e-10	0.079722	1	0.017042	1	0.26969	1	0.11793	1
Del Peak 26(21q22.3)	0 (0%)	127	1.7666e-06	0.000627	2.5375e-12	9.41e-10	9.2387e-11	3.41e-08	8.0499e-13	3.01e-10	0.030061	1	0.0015652	0.502	0.0044219	1	0.025137	1