Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q
Amp Peak  1(1q21.3)	0 (0%)	114	1	1	0.62971	1	0.00067608	0.483	0.61879	1	0.53079	1	0.17967	1	0.77566	1	0.01376	1	0.080473	1	0.6456	1	0.081808	1	0.89285	1
Amp Peak  2(1q32.2)	0 (0%)	114	0.82743	1	0.88024	1	0.0091792	1	0.57469	1	0.18541	1	0.05346	1	0.91207	1	0.066687	1	0.10974	1	0.38951	1	0.017912	1	0.69598	1
Amp Peak  3(5q22.3)	0 (0%)	143	0.014129	1	0.56595	1	0.11811	1	0.25402	1	0.15943	1	0.44546	1	0.073772	1	0.21508	1	0.48523	1	0.6501	1	0.056874	1	0.27779	1
Amp Peak  4(6p21.1)	0 (0%)	110	0.030481	1	0.016131	1	0.0001122	0.0812	0.049659	1	0.91209	1	0.10028	1	0.73756	1	0.74663	1	0.16273	1	0.4132	1	0.67734	1	0.98741	1
Amp Peak  5(8p11.23)	0 (0%)	110	0.0031271	1	0.2834	1	2.5362e-08	1.86e-05	0.30593	1	0.37604	1	0.37587	1	0.66166	1	0.82329	1	0.056811	1	0.006683	1	0.49219	1	0.191	1
Amp Peak  6(8p11.21)	0 (0%)	93	0.012302	1	0.087454	1	2.3766e-13	1.75e-10	0.093513	1	0.37063	1	0.49954	1	0.37725	1	0.93513	1	0.17278	1	0.084031	1	0.39047	1	0.10967	1
Amp Peak  7(8q24.21)	0 (0%)	55	0.016481	1	0.072583	1	1.6962e-09	1.25e-06	0.045191	1	0.6293	1	0.59046	1	0.44408	1	0.62717	1	0.56639	1	0.1442	1	0.63786	1	0.1529	1
Amp Peak  8(10q22.2)	0 (0%)	151	0.50188	1	0.8654	1	0.91222	1	1	1	1	1	0.69385	1	NA	NA	NA	NA	0.38713	1	0.28022	1	0.5939	1	0.86103	1
Amp Peak  9(11p15.5)	0 (0%)	119	0.53578	1	0.77528	1	0.02861	1	0.87255	1	0.6968	1	0.69589	1	0.0083486	1	0.0029467	1	0.090226	1	0.47006	1	0.59968	1	0.0064388	1
Amp Peak 10(11q13.3)	0 (0%)	136	0.061289	1	0.04023	1	0.00056834	0.408	0.0026665	1	0.90643	1	0.86129	1	0.10531	1	0.66961	1	0.015119	1	0.13584	1	0.67398	1	0.66036	1
Amp Peak 11(12p13.33)	0 (0%)	121	0.68987	1	1	1	0.038474	1	0.51215	1	0.11336	1	0.055766	1	0.45197	1	0.24127	1	0.59317	1	0.83975	1	0.18004	1	0.46293	1
Amp Peak 12(12p12.1)	0 (0%)	122	0.69731	1	1	1	0.036007	1	0.4878	1	0.050265	1	0.027297	1	0.60471	1	0.19729	1	0.68075	1	0.42012	1	0.055178	1	0.51502	1
Amp Peak 13(13q12.13)	0 (0%)	41	0.41554	1	1	1	3.0576e-05	0.0222	0.45575	1	0.42395	1	0.42668	1	0.011789	1	0.24069	1	0.012234	1	0.0084705	1	0.31005	1	0.45765	1
Amp Peak 14(13q12.2)	0 (0%)	42	0.36308	1	0.88933	1	4.8631e-06	0.00355	0.31097	1	0.73573	1	0.54848	1	0.032516	1	0.42338	1	0.073716	1	0.022669	1	0.037126	1	0.42503	1
Amp Peak 15(13q22.1)	0 (0%)	45	0.26491	1	0.64482	1	1.0215e-07	7.48e-05	0.08112	1	0.90663	1	0.13971	1	0.37232	1	0.41792	1	0.0071233	1	0.0030409	1	0.030598	1	0.09455	1
Amp Peak 16(15q26.1)	0 (0%)	147	0.18343	1	0.15528	1	0.3144	1	0.48967	1	0.10096	1	0.24402	1	0.18879	1	0.21508	1	0.50321	1	0.91887	1	0.45421	1	0.27768	1
Amp Peak 17(16p11.2)	0 (0%)	117	0.067407	1	0.58983	1	2.957e-05	0.0215	0.2517	1	0.30027	1	0.30573	1	0.38762	1	0.78928	1	0.17842	1	0.81575	1	0.20182	1	0.12332	1
Amp Peak 18(17q12)	0 (0%)	119	0.006408	1	0.19628	1	0.00020043	0.145	0.50152	1	0.17627	1	0.89536	1	0.35616	1	0.14626	1	0.17128	1	0.89783	1	0.46863	1	0.81576	1
Amp Peak 19(17q24.1)	0 (0%)	125	0.29084	1	0.94155	1	0.0003305	0.238	0.12095	1	0.60834	1	0.62978	1	0.56855	1	0.2359	1	0.59889	1	0.66794	1	0.78561	1	0.69917	1
Amp Peak 20(19p13.2)	0 (0%)	130	0.02015	1	0.0087073	1	0.00059945	0.429	0.6732	1	0.38942	1	0.25859	1	0.15321	1	0.53132	1	0.64297	1	0.91553	1	0.60643	1	0.60239	1
Amp Peak 21(20q11.21)	0 (0%)	19	0.0077699	1	0.37582	1	0.0011551	0.824	0.034161	1	0.19393	1	0.076606	1	0.55197	1	0.2711	1	0.028261	1	0.091641	1	0.01254	1	0.30861	1
Amp Peak 22(20q11.23)	0 (0%)	18	0.0077699	1	0.37582	1	0.0025676	1	0.094019	1	0.19393	1	0.076606	1	0.55197	1	0.2711	1	0.050441	1	0.069719	1	0.033185	1	0.49299	1
Amp Peak 23(20q13.31)	0 (0%)	17	0.0046196	1	0.30959	1	0.0054418	1	0.094019	1	0.19393	1	0.076606	1	0.55197	1	0.2711	1	0.072829	1	0.10856	1	0.033185	1	0.49299	1
Amp Peak 24(Xp22.2)	0 (0%)	129	0.024723	1	0.055969	1	0.64385	1	0.50377	1	0.79486	1	0.65986	1	0.99131	1	1	1	0.77535	1	0.95503	1	0.16618	1	0.27968	1
Amp Peak 25(Xq27.3)	0 (0%)	124	0.20904	1	0.56362	1	0.025243	1	0.038878	1	0.58622	1	0.182	1	0.25226	1	0.70188	1	0.56022	1	0.44199	1	0.18539	1	0.42382	1
Del Peak  1(1p36.11)	0 (0%)	91	0.23962	1	0.025525	1	0.42909	1	0.067735	1	0.80307	1	0.80129	1	0.56893	1	1	1	0.46685	1	0.75544	1	0.89978	1	0.93817	1
Del Peak  2(1p33)	0 (0%)	113	0.62604	1	0.0028863	1	0.0019569	1	0.056265	1	0.8802	1	0.24652	1	0.66084	1	1	1	0.36878	1	0.18664	1	0.93716	1	0.69128	1
Del Peak  3(1p13.2)	0 (0%)	111	0.69731	1	0.028734	1	0.00017777	0.129	0.3528	1	0.54399	1	0.73917	1	0.1805	1	0.49979	1	0.40427	1	0.10357	1	0.88332	1	0.82734	1
Del Peak  4(2p12)	0 (0%)	145	0.39298	1	0.46733	1	0.062324	1	0.88418	1	0.34371	1	0.17064	1	0.65501	1	1	1	0.37004	1	0.62042	1	0.51518	1	0.56821	1
Del Peak  5(3p14.2)	0 (0%)	133	0.80035	1	0.49089	1	0.60562	1	0.83289	1	0.21748	1	0.69444	1	0.2683	1	0.31862	1	0.83154	1	1	1	0.51859	1	0.65103	1
Del Peak  6(3q26.31)	0 (0%)	145	1	1	0.38315	1	0.60366	1	1	1	0.74646	1	0.70317	1	0.24215	1	1	1	0.098052	1	0.93302	1	0.082224	1	0.80674	1
Del Peak  7(4p13)	0 (0%)	104	0.78024	1	0.22787	1	0.00089499	0.639	0.024031	1	0.78722	1	0.31314	1	0.50256	1	0.29255	1	0.97511	1	0.06163	1	0.62592	1	0.22592	1
Del Peak  8(4q22.1)	0 (0%)	90	0.78671	1	0.10042	1	9.6487e-05	0.07	0.11405	1	0.70221	1	0.71142	1	0.024565	1	0.055589	1	0.91702	1	0.081595	1	0.95223	1	0.4026	1
Del Peak  9(4q35.1)	0 (0%)	90	0.60943	1	0.33396	1	0.0005371	0.386	0.052526	1	0.50566	1	0.68762	1	0.45231	1	0.038005	1	0.43129	1	0.036917	1	0.89887	1	0.34861	1
Del Peak 10(5q11.2)	0 (0%)	113	0.16795	1	0.049836	1	0.10232	1	0.0039069	1	0.94014	1	0.24027	1	0.11674	1	0.93039	1	0.45773	1	0.037837	1	0.14249	1	0.15738	1
Del Peak 11(5q22.2)	0 (0%)	107	0.31331	1	0.01899	1	0.084382	1	0.39696	1	0.68363	1	0.98735	1	0.468	1	0.67475	1	0.65959	1	0.1914	1	0.062319	1	0.10374	1
Del Peak 12(6p25.3)	0 (0%)	138	1	1	0.82611	1	0.6483	1	0.033766	1	0.65447	1	0.98801	1	0.68001	1	0.55372	1	0.69002	1	0.56801	1	0.69834	1	0.47564	1
Del Peak 13(6q26)	0 (0%)	132	0.15837	1	0.035378	1	0.15883	1	0.79935	1	0.099334	1	0.34296	1	0.89011	1	0.64772	1	0.077132	1	0.064496	1	0.30212	1	0.56595	1
Del Peak 14(7q31.1)	0 (0%)	158	NA	NA	NA	NA	0.31082	1	NA	NA	1	1	0.45888	1	NA	NA	NA	NA	0.74868	1	1	1	NA	NA	NA	NA
Del Peak 15(8p23.2)	0 (0%)	62	0.11073	1	0.063804	1	6.4006e-06	0.00466	0.045563	1	1	1	0.58239	1	0.028941	1	0.23037	1	0.64291	1	0.86294	1	0.54364	1	0.45032	1
Del Peak 16(8p11.21)	0 (0%)	138	0.31687	1	0.69006	1	0.13977	1	0.32414	1	0.11167	1	0.56022	1	0.40796	1	0.42343	1	0.07528	1	0.11678	1	0.17042	1	0.040846	1
Del Peak 17(10q21.1)	0 (0%)	125	0.21821	1	0.22792	1	0.071628	1	0.24636	1	0.059525	1	0.023689	1	0.1832	1	0.61953	1	0.74738	1	0.89178	1	0.8642	1	0.59384	1
Del Peak 18(10q25.2)	0 (0%)	115	0.57047	1	0.62551	1	0.80633	1	0.59543	1	0.4555	1	0.20327	1	0.12902	1	0.92805	1	0.70326	1	0.74207	1	0.98292	1	0.61537	1
Del Peak 19(11q22.3)	0 (0%)	125	0.0048106	1	0.012707	1	0.001497	1	0.090044	1	0.82573	1	0.055675	1	0.019827	1	0.00048902	0.352	0.4437	1	0.6167	1	0.72481	1	0.54326	1
Del Peak 20(12p13.1)	0 (0%)	129	1	1	1	1	0.65679	1	0.22429	1	0.53485	1	0.31093	1	0.39086	1	0.0066599	1	0.28732	1	0.22381	1	0.79417	1	0.1552	1
Del Peak 21(12q21.33)	0 (0%)	134	0.67102	1	0.91984	1	0.020619	1	0.69025	1	0.60629	1	0.77513	1	0.38314	1	0.042172	1	0.46703	1	0.24691	1	0.61714	1	0.36823	1
Del Peak 22(14q11.2)	0 (0%)	95	0.67794	1	0.66608	1	0.0034551	1	1	1	0.80307	1	0.88786	1	0.39515	1	0.39026	1	0.085815	1	0.14089	1	0.70215	1	0.63177	1
Del Peak 23(14q31.1)	0 (0%)	93	0.67794	1	0.66608	1	0.011517	1	1	1	0.63308	1	0.31637	1	0.26127	1	0.44245	1	0.16147	1	0.19973	1	0.85327	1	0.79754	1
Del Peak 24(15q22.33)	0 (0%)	87	0.71987	1	0.079268	1	0.000218	0.157	0.60499	1	0.19355	1	0.21454	1	0.25979	1	0.50982	1	0.38355	1	0.77689	1	0.68278	1	0.73465	1
Del Peak 25(16p13.3)	0 (0%)	149	0.88624	1	0.77815	1	0.5352	1	0.026926	1	0.72489	1	0.66699	1	0.74652	1	1	1	0.23706	1	0.31657	1	0.91261	1	0.69269	1
Del Peak 26(16q23.1)	0 (0%)	139	0.15265	1	0.19086	1	0.087296	1	0.20196	1	0.58873	1	0.7112	1	0.44041	1	1	1	0.61937	1	0.1031	1	0.61302	1	0.23748	1
Del Peak 27(17p12)	0 (0%)	52	0.16526	1	0.48506	1	0.029947	1	0.55509	1	0.5205	1	0.75599	1	0.20569	1	0.031426	1	0.86955	1	0.4458	1	0.47932	1	0.69661	1
Del Peak 28(17p11.2)	0 (0%)	60	0.33066	1	0.52026	1	0.049408	1	0.79734	1	0.91881	1	0.37914	1	0.058227	1	0.069566	1	0.99854	1	0.9146	1	1	1	0.76651	1
Del Peak 29(17q25.3)	0 (0%)	138	0.54396	1	0.23567	1	0.19208	1	0.023229	1	0.45669	1	0.17116	1	0.048254	1	0.014985	1	0.35237	1	0.15531	1	0.40915	1	0.1748	1
Del Peak 30(18q21.2)	0 (0%)	19	0.13231	1	0.12316	1	5.1796e-06	0.00378	0.15206	1	1	1	0.57316	1	0.12027	1	0.42343	1	0.43297	1	0.23061	1	0.58061	1	0.86137	1
Del Peak 31(18q22.1)	0 (0%)	24	0.067096	1	0.060474	1	2.382e-07	0.000174	0.03658	1	0.77648	1	0.48393	1	0.0053782	1	0.47536	1	0.80517	1	0.49327	1	0.015943	1	0.4351	1
Del Peak 32(19p13.3)	0 (0%)	124	0.19827	1	0.49089	1	0.067096	1	0.05277	1	0.89267	1	0.95762	1	0.40872	1	0.019103	1	0.49243	1	0.012546	1	0.32312	1	0.21502	1
Del Peak 33(20p12.1)	0 (0%)	102	0.62132	1	0.78218	1	0.036074	1	0.72354	1	0.53976	1	0.28001	1	0.23266	1	0.93039	1	0.04741	1	0.23436	1	0.77651	1	0.95689	1
Del Peak 34(20p12.1)	0 (0%)	102	0.62132	1	0.78218	1	0.036074	1	0.72354	1	0.53976	1	0.28001	1	0.23266	1	0.93039	1	0.04741	1	0.23436	1	0.77651	1	0.95689	1
Del Peak 35(21q11.2)	0 (0%)	92	0.48561	1	0.12002	1	0.30436	1	0.96443	1	0.92386	1	0.40997	1	0.55027	1	0.93744	1	0.052038	1	0.46549	1	0.3479	1	0.53015	1
Del Peak 36(22q13.31)	0 (0%)	96	0.95241	1	0.51272	1	0.22235	1	0.69497	1	0.53236	1	0.46181	1	0.26396	1	0.19409	1	0.0061925	1	0.33691	1	0.19829	1	0.18327	1
Del Peak 37(Xp22.33)	0 (0%)	129	0.77785	1	0.77528	1	0.26577	1	0.0020432	1	0.72435	1	0.80143	1	0.90994	1	1	1	0.64257	1	0.81867	1	0.97727	1	0.6991	1