Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	44	0.23276	1	0.24289	1	0.57307	1	0.60591	1	0.57307	1	0.60591	1
1q gain	0 (0%)	45	0.39186	1	0.0071565	1	0.07827	1	0.16366	1	0.07827	1	0.16366	1
2p gain	0 (0%)	49	0.32629	1	0.099186	1	1	1	NA	NA	1	1	NA	NA
4p gain	0 (0%)	47	0.52224	1	0.60157	1	NA	NA	NA	NA	NA	NA	NA	NA
5p gain	0 (0%)	39	0.024349	1	1	1	1	1	1	1	1	1	1	1
5q gain	0 (0%)	41	0.021179	1	0.33406	1	1	1	1	1	1	1	1	1
6p gain	0 (0%)	44	0.20656	1	0.074964	1	0.10673	1	0.2354	1	0.10673	1	0.2354	1
6q gain	0 (0%)	42	0.008399	1	0.021925	1	0.047619	1	0.092586	1	0.047619	1	0.092586	1
7p gain	0 (0%)	39	0.022028	1	0.26847	1	0.63218	1	0.28256	1	0.63218	1	0.28256	1
7q gain	0 (0%)	41	0.12662	1	0.11626	1	0.63218	1	0.28256	1	0.63218	1	0.28256	1
8p gain	0 (0%)	43	0.065732	1	0.89865	1	0.63218	1	0.68877	1	0.63218	1	0.68877	1
8q gain	0 (0%)	44	0.13773	1	0.10599	1	1	1	1	1	1	1	1	1
9p gain	0 (0%)	48	0.031586	1	0.44439	1	0.48768	1	NA	NA	0.48768	1	NA	NA
9q gain	0 (0%)	45	0.012164	1	0.36346	1	0.10673	1	0.2354	1	0.10673	1	0.2354	1
12p gain	0 (0%)	45	0.58002	1	1	1	1	1	NA	NA	1	1	NA	NA
14q gain	0 (0%)	49	1	1	0.76543	1	1	1	NA	NA	1	1	NA	NA
15q gain	0 (0%)	44	0.26359	1	0.70801	1	1	1	NA	NA	1	1	NA	NA
16p gain	0 (0%)	45	0.67182	1	0.18972	1	0.57307	1	0.60591	1	0.57307	1	0.60591	1
17p gain	0 (0%)	44	0.010234	1	0.0020339	0.712	1	1	NA	NA	1	1	NA	NA
17q gain	0 (0%)	46	0.30109	1	0.34112	1	0.57307	1	0.10345	1	0.57307	1	0.10345	1
18p gain	0 (0%)	45	1	1	0.47545	1	1	1	NA	NA	1	1	NA	NA
18q gain	0 (0%)	44	0.13773	1	0.70801	1	1	1	1	1	1	1	1	1
19p gain	0 (0%)	42	0.0096029	1	0.56787	1	0.57307	1	0.10345	1	0.57307	1	0.10345	1
19q gain	0 (0%)	46	0.021717	1	0.66578	1	NA	NA	NA	NA	NA	NA	NA	NA
20p gain	0 (0%)	39	0.42333	1	0.22939	1	1	1	1	1	1	1	1	1
20q gain	0 (0%)	36	0.072783	1	0.026621	1	1	1	1	1	1	1	1	1
21q gain	0 (0%)	45	0.7722	1	0.1524	1	1	1	NA	NA	1	1	NA	NA
22q gain	0 (0%)	47	0.34354	1	0.85589	1	0.44828	1	NA	NA	0.44828	1	NA	NA
1p loss	0 (0%)	43	0.16818	1	0.34348	1	0.14395	1	0.055804	1	0.14395	1	0.055804	1
1q loss	0 (0%)	46	0.48064	1	1	1	1	1	1	1	1	1	1	1
2p loss	0 (0%)	42	1	1	0.30006	1	0.63218	1	0.68877	1	0.63218	1	0.68877	1
2q loss	0 (0%)	44	0.62253	1	0.50208	1	1	1	1	1	1	1	1	1
3p loss	0 (0%)	42	0.090159	1	0.6756	1	0.10673	1	0.2354	1	0.10673	1	0.2354	1
3q loss	0 (0%)	39	0.016283	1	0.31427	1	0.18336	1	0.36272	1	0.18336	1	0.36272	1
4p loss	0 (0%)	46	0.21	1	0.25454	1	0.48768	1	NA	NA	0.48768	1	NA	NA
4q loss	0 (0%)	46	0.41467	1	0.25454	1	0.48768	1	NA	NA	0.48768	1	NA	NA
5p loss	0 (0%)	48	0.11245	1	1	1	0.48768	1	NA	NA	0.48768	1	NA	NA
5q loss	0 (0%)	47	0.52224	1	0.35091	1	0.48768	1	NA	NA	0.48768	1	NA	NA
6p loss	0 (0%)	44	0.79449	1	0.24289	1	0.36398	1	0.48777	1	0.36398	1	0.48777	1
6q loss	0 (0%)	48	0.66397	1	0.30876	1	1	1	NA	NA	1	1	NA	NA
7p loss	0 (0%)	48	0.34071	1	0.30876	1	0.57307	1	0.60591	1	0.57307	1	0.60591	1
7q loss	0 (0%)	46	0.30109	1	0.25454	1	0.60591	1	0.66654	1	0.60591	1	0.66654	1
8p loss	0 (0%)	42	0.32417	1	0.369	1	0.66284	1	0.11899	1	0.66284	1	0.11899	1
8q loss	0 (0%)	47	0.71752	1	0.033484	1	0.23153	1	0.31691	1	0.23153	1	0.31691	1
9p loss	0 (0%)	41	0.0032987	1	0.27387	1	0.18336	1	0.012808	1	0.18336	1	0.012808	1
9q loss	0 (0%)	46	0.21	1	0.49263	1	0.60591	1	0.66654	1	0.60591	1	0.66654	1
10p loss	0 (0%)	34	0.11529	1	0.077223	1	1	1	0.33975	1	1	1	0.33975	1
10q loss	0 (0%)	32	0.034942	1	0.01759	1	0.064097	1	0.071807	1	0.064097	1	0.071807	1
11p loss	0 (0%)	35	0.032175	1	0.14888	1	0.40996	1	0.064734	1	0.40996	1	0.064734	1
11q loss	0 (0%)	39	0.0027312	0.953	0.31427	1	0.18336	1	0.36272	1	0.18336	1	0.36272	1
12q loss	0 (0%)	47	0.8342	1	0.85589	1	0.48768	1	NA	NA	0.48768	1	NA	NA
13q loss	0 (0%)	29	0.093347	1	0.34298	1	0.71629	1	0.56007	1	0.71629	1	0.56007	1
14q loss	0 (0%)	36	0.072783	1	0.27373	1	0.22559	1	0.1502	1	0.22559	1	0.1502	1
15q loss	0 (0%)	43	0.086905	1	0.20038	1	0.0084291	1	0.01356	1	0.0084291	1	0.01356	1
16p loss	0 (0%)	43	0.41237	1	0.89865	1	0.34319	1	0.46646	1	0.34319	1	0.46646	1
16q loss	0 (0%)	32	0.71156	1	0.02784	1	0.68816	1	0.36832	1	0.68816	1	0.36832	1
17p loss	0 (0%)	44	0.79449	1	0.24289	1	1	1	1	1	1	1	1	1
17q loss	0 (0%)	47	0.8342	1	0.11355	1	0.57307	1	0.60591	1	0.57307	1	0.60591	1
18p loss	0 (0%)	44	0.55114	1	0.24289	1	0.60591	1	0.66654	1	0.60591	1	0.66654	1
18q loss	0 (0%)	42	0.74031	1	0.56787	1	0.60591	1	0.66654	1	0.60591	1	0.66654	1
19q loss	0 (0%)	47	0.71752	1	0.35091	1	1	1	NA	NA	1	1	NA	NA
20p loss	0 (0%)	47	0.22149	1	0.60157	1	0.34319	1	0.46646	1	0.34319	1	0.46646	1
21q loss	0 (0%)	44	0.019119	1	0.89382	1	1	1	1	1	1	1	1	1
22q loss	0 (0%)	37	1	1	0.47265	1	0.70211	1	0.81668	1	0.70211	1	0.81668	1
Xq loss	0 (0%)	42	0.062728	1	0.16845	1	1	1	1	1	1	1	1	1