Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p32.1)	0 (0%)	37	0.22591	1	0.056751	1	0.12964	1	0.27836	1	0.12964	1	0.27836	1
Amp Peak  2(1q24.3)	0 (0%)	30	0.074101	1	0.36539	1	1	1	1	1	1	1	1	1
Amp Peak  3(4p15.2)	0 (0%)	36	0.27808	1	0.069753	1	0.69682	1	1	1	0.69682	1	1	1
Amp Peak  4(5p15.33)	0 (0%)	28	0.185	1	0.41983	1	0.43348	1	0.62939	1	0.43348	1	0.62939	1
Amp Peak  5(6p21.1)	0 (0%)	39	0.36306	1	0.004785	1	0.40996	1	0.74346	1	0.40996	1	0.74346	1
Amp Peak  6(6q25.1)	0 (0%)	37	0.0054506	1	0.0048233	1	0.12964	1	0.27836	1	0.12964	1	0.27836	1
Amp Peak  7(7p15.3)	0 (0%)	33	0.00012354	0.0297	0.018017	1	0.11421	1	0.15191	1	0.11421	1	0.15191	1
Amp Peak  8(11q22.2)	0 (0%)	40	0.84025	1	0.35518	1	0.020471	1	0.046339	1	0.020471	1	0.046339	1
Amp Peak  9(12p13.32)	0 (0%)	37	0.07519	1	0.27584	1	0.09272	1	0.22525	1	0.09272	1	0.22525	1
Amp Peak 10(12q15)	0 (0%)	25	0.00016617	0.0397	2.6057e-08	6.41e-06	2.1867e-05	0.00536	2.9088e-05	0.00704	2.1867e-05	0.00536	2.9088e-05	0.00704
Amp Peak 11(17p12)	0 (0%)	33	0.22018	1	0.51326	1	0.19167	1	0.10279	1	0.19167	1	0.10279	1
Amp Peak 12(19p13.2)	0 (0%)	30	0.0017866	0.42	0.68577	1	0.40996	1	0.064734	1	0.40996	1	0.064734	1
Amp Peak 13(Xq21.1)	0 (0%)	42	0.20535	1	0.24703	1	1	1	1	1	1	1	1	1
Del Peak  1(1p36.32)	0 (0%)	34	0.65824	1	0.071838	1	0.22559	1	0.09853	1	0.22559	1	0.09853	1
Del Peak  2(1p32.3)	0 (0%)	39	0.0017421	0.411	0.72057	1	0.06382	1	0.029481	1	0.06382	1	0.029481	1
Del Peak  3(1q44)	0 (0%)	34	0.037008	1	0.0032735	0.763	0.69682	1	1	1	0.69682	1	1	1
Del Peak  4(2q37.3)	0 (0%)	28	0.099401	1	0.3278	1	0.2723	1	0.34532	1	0.2723	1	0.34532	1
Del Peak  5(3p21.31)	0 (0%)	37	0.0016101	0.382	0.02112	1	0.23785	1	0.056892	1	0.23785	1	0.056892	1
Del Peak  6(3q25.1)	0 (0%)	34	0.006462	1	0.045173	1	0.12964	1	0.038823	1	0.12964	1	0.038823	1
Del Peak  7(4q35.1)	0 (0%)	27	0.12265	1	0.13618	1	0.26417	1	0.26417	1	0.26417	1	0.26417	1
Del Peak  8(5q23.3)	0 (0%)	42	0.82096	1	0.74662	1	1	1	1	1	1	1	1	1
Del Peak  9(6q15)	0 (0%)	38	0.48267	1	0.6781	1	0.66284	1	0.11899	1	0.66284	1	0.11899	1
Del Peak 10(7q36.3)	0 (0%)	38	0.24827	1	0.6781	1	0.66284	1	0.74064	1	0.66284	1	0.74064	1
Del Peak 11(8p23.2)	0 (0%)	35	0.0063714	1	0.056792	1	0.24903	1	0.076925	1	0.24903	1	0.076925	1
Del Peak 12(9p21.3)	0 (0%)	28	2.3944e-05	0.00582	0.040858	1	0.70211	1	0.23994	1	0.70211	1	0.23994	1
Del Peak 13(9q34.3)	0 (0%)	37	0.54226	1	0.20668	1	1	1	1	1	1	1	1	1
Del Peak 14(10p15.3)	0 (0%)	28	0.15008	1	0.54079	1	0.46568	1	0.42177	1	0.46568	1	0.42177	1
Del Peak 15(11p15.5)	0 (0%)	28	0.093475	1	0.9422	1	1	1	0.43786	1	1	1	0.43786	1
Del Peak 16(11q22.3)	0 (0%)	26	0.0029699	0.695	0.30012	1	0.71525	1	0.84667	1	0.71525	1	0.84667	1
Del Peak 17(11q25)	0 (0%)	28	0.033905	1	0.011179	1	0.71073	1	0.84424	1	0.71073	1	0.84424	1
Del Peak 18(12p12.3)	0 (0%)	38	0.0015969	0.38	0.081654	1	0.45427	1	0.78411	1	0.45427	1	0.78411	1
Del Peak 19(13q14.2)	0 (0%)	15	0.68033	1	0.094059	1	0.43348	1	0.62939	1	0.43348	1	0.62939	1
Del Peak 20(13q34)	0 (0%)	27	0.015352	1	0.070207	1	0.4515	1	0.18431	1	0.4515	1	0.18431	1
Del Peak 21(14q24.1)	0 (0%)	26	0.013708	1	0.64296	1	0.2723	1	0.34532	1	0.2723	1	0.34532	1
Del Peak 22(17p13.1)	0 (0%)	37	0.24269	1	0.17504	1	0.40576	1	0.44308	1	0.40576	1	0.44308	1
Del Peak 23(17q25.3)	0 (0%)	37	0.92772	1	0.59482	1	1	1	1	1	1	1	1	1
Del Peak 24(19p13.3)	0 (0%)	37	0.20965	1	0.056751	1	1	1	1	1	1	1	1	1
Del Peak 25(19q13.33)	0 (0%)	34	0.48825	1	0.0067967	1	0.46568	1	0.42177	1	0.46568	1	0.42177	1
Del Peak 26(21q22.3)	0 (0%)	32	0.16808	1	0.59333	1	0.70211	1	0.81668	1	0.70211	1	0.81668	1
Del Peak 27(Xq21.1)	0 (0%)	26	0.41242	1	0.30012	1	0.46214	1	0.57896	1	0.46214	1	0.57896	1
Del Peak 28(Xq28)	0 (0%)	27	0.52805	1	0.080821	1	0.27418	1	0.25097	1	0.27418	1	0.25097	1