Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	231	0.039661	1	0.29197	1	0.056257	1	0.43299	1	0.089447	1	0.18747	1	0.75624	1	0.54203	1	0.53493	1	0.37433	1
1q gain	0 (0%)	177	0.00018188	0.136	0.0025306	1	0.36626	1	0.1029	1	0.095296	1	0.71884	1	0.20529	1	0.016336	1	0.16623	1	0.012586	1
2p gain	0 (0%)	229	0.0045684	1	0.15641	1	0.061729	1	0.4549	1	0.0019401	1	0.017253	1	0.093865	1	0.011705	1	0.19814	1	0.033997	1
2q gain	0 (0%)	230	0.00077263	0.563	0.21811	1	0.020026	1	0.43294	1	0.00052185	0.384	0.0046816	1	0.010638	1	0.00071294	0.522	0.018498	1	0.0027304	1
3p gain	0 (0%)	237	0.02368	1	0.10317	1	1	1	0.77075	1	0.17351	1	0.27067	1	0.57701	1	0.75753	1	0.9602	1	0.47992	1
3q gain	0 (0%)	230	0.010958	1	0.21811	1	0.56458	1	0.59406	1	0.36577	1	0.49681	1	0.84802	1	0.67015	1	0.72401	1	0.30742	1
4p gain	0 (0%)	234	0.0017283	1	0.036388	1	0.97929	1	0.46856	1	0.7327	1	0.52567	1	0.69697	1	0.58571	1	1	1	0.43432	1
4q gain	0 (0%)	239	0.0142	1	0.027442	1	0.92289	1	0.9449	1	0.5136	1	0.53462	1	0.45753	1	0.61353	1	0.87655	1	0.23441	1
5p gain	0 (0%)	230	6.4564e-05	0.0484	0.20454	1	0.75834	1	0.81906	1	0.84853	1	0.20099	1	0.24924	1	0.75396	1	0.03225	1	0.14504	1
5q gain	0 (0%)	243	6.6949e-05	0.0501	0.19428	1	0.85315	1	0.43317	1	0.70932	1	0.20188	1	0.22734	1	0.14509	1	0.44717	1	0.24753	1
6p gain	0 (0%)	178	4.9511e-05	0.0371	2.2809e-05	0.0172	0.089368	1	0.58862	1	0.084848	1	0.069867	1	0.018774	1	0.00082306	0.598	0.24481	1	0.00075532	0.551
6q gain	0 (0%)	238	0.21678	1	0.085884	1	1	1	0.4979	1	0.9158	1	0.31021	1	0.71812	1	0.64079	1	0.62765	1	0.40915	1
7p gain	0 (0%)	153	2.3474e-09	1.82e-06	0.088185	1	0.1947	1	0.29812	1	0.00022534	0.167	0.034301	1	0.82619	1	0.43145	1	0.81795	1	0.1988	1
7q gain	0 (0%)	151	3.8584e-08	2.97e-05	0.1233	1	0.13043	1	0.16729	1	0.00014027	0.105	0.030804	1	0.31904	1	0.10848	1	0.40045	1	0.086331	1
8p gain	0 (0%)	205	2.9508e-07	0.000226	0.0026855	1	0.056231	1	0.36356	1	0.015323	1	0.039816	1	0.73253	1	0.43822	1	0.18247	1	0.85395	1
8q gain	0 (0%)	172	1.4389e-09	1.12e-06	6.5289e-06	0.00496	0.60323	1	0.92449	1	0.0006092	0.448	0.0096755	1	0.42355	1	0.61966	1	0.048966	1	0.75362	1
9p gain	0 (0%)	250	1	1	0.4307	1	0.11973	1	0.4352	1	0.39497	1	0.80535	1	0.7662	1	0.45921	1	0.83658	1	0.25874	1
9q gain	0 (0%)	249	0.53835	1	0.79687	1	0.23617	1	0.59993	1	0.78398	1	0.83607	1	0.7662	1	0.34079	1	0.83658	1	0.29799	1
11p gain	0 (0%)	243	0.012771	1	0.90204	1	0.14706	1	0.47436	1	0.017171	1	0.48312	1	0.54106	1	0.076071	1	0.39127	1	0.17253	1
11q gain	0 (0%)	245	0.0077071	1	0.44109	1	0.30722	1	0.71982	1	0.021336	1	0.29787	1	0.77634	1	0.062498	1	0.6465	1	0.20489	1
12p gain	0 (0%)	235	1.9126e-05	0.0145	0.13251	1	1	1	0.99421	1	0.0092916	1	0.13903	1	0.21068	1	0.31053	1	0.068887	1	0.13351	1
12q gain	0 (0%)	248	0.011556	1	0.65782	1	0.84658	1	0.80659	1	0.046047	1	0.026098	1	0.42135	1	0.23135	1	0.49945	1	0.048714	1
13q gain	0 (0%)	219	1.2893e-07	9.9e-05	1.9455e-05	0.0147	0.39853	1	0.17425	1	0.019268	1	0.054461	1	0.39425	1	0.47737	1	0.94947	1	0.8914	1
14q gain	0 (0%)	243	3.1621e-05	0.0238	0.051993	1	0.043079	1	0.2567	1	1	1	0.79149	1	0.48378	1	0.80143	1	1	1	0.92262	1
15q gain	0 (0%)	225	4.7985e-05	0.0361	0.53044	1	0.56665	1	0.91224	1	0.54602	1	0.24263	1	0.83316	1	0.095356	1	0.6024	1	0.30952	1
16p gain	0 (0%)	240	4.7983e-05	0.0361	0.0037538	1	0.45191	1	0.7244	1	0.037757	1	0.1249	1	0.674	1	0.51192	1	0.12876	1	0.40377	1
16q gain	0 (0%)	243	0.0012904	0.932	0.033869	1	0.19217	1	0.52674	1	0.037335	1	0.23063	1	0.74306	1	0.22751	1	0.19874	1	0.30567	1
17p gain	0 (0%)	243	0.23243	1	0.26491	1	0.78132	1	0.8291	1	0.33547	1	0.60413	1	0.55512	1	0.60621	1	0.077559	1	0.35887	1
17q gain	0 (0%)	231	0.014521	1	0.14875	1	0.62772	1	0.21262	1	0.50975	1	0.20935	1	0.16514	1	0.42202	1	0.050331	1	0.27099	1
18p gain	0 (0%)	231	0.023366	1	0.14875	1	0.90985	1	0.80089	1	0.075409	1	0.071425	1	0.35645	1	0.29259	1	0.4243	1	0.32657	1
18q gain	0 (0%)	241	0.029227	1	0.11266	1	0.53556	1	0.30764	1	0.23601	1	0.044895	1	1	1	0.92652	1	1	1	0.66061	1
19p gain	0 (0%)	243	0.0084341	1	0.030103	1	0.62295	1	0.20364	1	0.003821	1	0.0020668	1	0.2854	1	0.80143	1	0.94839	1	0.5246	1
19q gain	0 (0%)	239	0.0029263	1	0.074996	1	0.41539	1	0.6776	1	0.00029868	0.221	0.06836	1	0.72679	1	0.83371	1	0.83815	1	0.51533	1
20p gain	0 (0%)	184	4.2935e-10	3.34e-07	0.00020501	0.153	0.34505	1	0.90363	1	0.00022481	0.167	0.0020441	1	0.05005	1	0.16741	1	0.0064778	1	0.10068	1
20q gain	0 (0%)	165	3.2806e-12	2.55e-09	0.00029358	0.217	0.44788	1	0.80222	1	0.0025981	1	0.066369	1	0.38172	1	0.42035	1	0.077223	1	0.13504	1
21q gain	0 (0%)	231	0.028607	1	0.00050418	0.372	0.18161	1	0.40155	1	0.046068	1	0.0090832	1	0.46962	1	0.95571	1	0.25951	1	0.61019	1
22q gain	0 (0%)	198	7.6256e-08	5.87e-05	0.17036	1	0.80323	1	0.93285	1	0.52749	1	0.86738	1	0.71707	1	0.58058	1	0.2549	1	0.19742	1
Xq gain	0 (0%)	256	1	1	1	1	1	1	0.50711	1	0.038031	1	0.11762	1	0.5664	1	0.42193	1	0.31015	1	0.39204	1
1p loss	0 (0%)	243	0.062263	1	0.0049657	1	0.66573	1	0.73035	1	0.060677	1	0.1686	1	0.32329	1	0.69844	1	0.26988	1	0.73647	1
1q loss	0 (0%)	253	0.0024937	1	0.3912	1	0.5445	1	0.56303	1	0.17927	1	0.52496	1	0.69977	1	0.73375	1	0.80456	1	1	1
2p loss	0 (0%)	241	0.30928	1	0.11266	1	0.30574	1	0.038365	1	0.53256	1	0.2762	1	0.0012626	0.913	0.0016975	1	0.0037646	1	0.023157	1
2q loss	0 (0%)	240	0.27123	1	0.018503	1	0.20779	1	0.14965	1	0.37648	1	0.23691	1	0.0022996	1	0.009869	1	0.0058932	1	0.054622	1
3p loss	0 (0%)	237	0.0333	1	0.087302	1	0.38163	1	0.36403	1	0.0021041	1	0.026955	1	0.77819	1	0.47911	1	0.78261	1	0.7832	1
3q loss	0 (0%)	240	0.20671	1	0.074364	1	0.42121	1	0.20933	1	0.067474	1	0.34301	1	0.95413	1	0.31459	1	0.69053	1	0.56981	1
4p loss	0 (0%)	229	0.51553	1	0.15641	1	0.34168	1	0.13245	1	0.0047715	1	0.22141	1	0.40311	1	0.48171	1	0.048429	1	0.54757	1
4q loss	0 (0%)	228	0.071175	1	0.044882	1	0.30806	1	0.02057	1	0.006447	1	0.02852	1	0.2912	1	0.14277	1	0.0036417	1	0.097695	1
5p loss	0 (0%)	226	0.0037814	1	0.28687	1	0.27238	1	0.33303	1	0.36585	1	0.28314	1	0.091222	1	0.16556	1	0.094899	1	0.13763	1
5q loss	0 (0%)	211	1.4815e-05	0.0112	0.13003	1	0.068857	1	0.55318	1	0.47049	1	0.53581	1	0.57761	1	0.85982	1	0.37306	1	0.74464	1
6p loss	0 (0%)	234	0.018601	1	0.38221	1	0.67193	1	0.47171	1	0.25709	1	0.31197	1	0.22596	1	0.32194	1	0.71977	1	0.51669	1
6q loss	0 (0%)	169	2.2141e-09	1.72e-06	0.0039106	1	0.33761	1	0.60818	1	0.00081904	0.596	0.053308	1	0.54598	1	0.34335	1	0.73842	1	0.22258	1
7p loss	0 (0%)	253	0.24008	1	0.050789	1	0.6645	1	0.47064	1	0.71565	1	0.78581	1	0.61809	1	1	1	0.64737	1	1	1
7q loss	0 (0%)	254	0.24516	1	0.12795	1	0.77926	1	0.70257	1	1	1	0.87549	1	1	1	1	1	1	1	0.80806	1
8p loss	0 (0%)	231	0.21282	1	0.29197	1	0.05702	1	0.4862	1	0.059363	1	0.34934	1	0.20154	1	0.1332	1	0.34187	1	0.17926	1
8q loss	0 (0%)	255	1	1	0.1219	1	0.13857	1	0.51542	1	0.32679	1	0.2853	1	0.85315	1	1	1	0.27699	1	1	1
9p loss	0 (0%)	118	3.1419e-08	2.43e-05	5.802e-06	0.00441	0.18758	1	0.13065	1	0.00072084	0.527	0.00062669	0.46	0.73959	1	0.53196	1	0.38909	1	0.74877	1
9q loss	0 (0%)	154	0.0062661	1	0.00023165	0.172	0.44783	1	0.36355	1	0.34583	1	0.79413	1	0.7664	1	0.46435	1	0.41932	1	0.48406	1
10p loss	0 (0%)	154	2.7437e-08	2.12e-05	3.7412e-06	0.00285	0.65987	1	0.08974	1	3.6196e-07	0.000277	0.00064786	0.475	0.29865	1	0.39089	1	0.66918	1	0.79266	1
10q loss	0 (0%)	140	2.6344e-06	0.00201	2.3244e-05	0.0175	0.53898	1	0.19182	1	2.5192e-07	0.000193	0.00018684	0.139	0.51599	1	0.65869	1	0.6554	1	0.94041	1
11p loss	0 (0%)	199	6.502e-07	0.000496	0.0011034	0.8	0.45883	1	0.20386	1	0.060718	1	0.014555	1	0.17944	1	0.37048	1	0.15094	1	0.22127	1
11q loss	0 (0%)	189	3.4746e-07	0.000266	0.01221	1	0.94881	1	0.68437	1	0.069466	1	0.012931	1	0.57881	1	0.57441	1	0.49159	1	0.53325	1
12p loss	0 (0%)	243	0.069759	1	0.006751	1	0.42381	1	0.7871	1	0.19998	1	0.3874	1	0.83718	1	0.72551	1	0.71014	1	0.91558	1
12q loss	0 (0%)	236	0.031308	1	0.0003811	0.281	0.34526	1	0.72671	1	0.2912	1	0.25973	1	0.95882	1	0.63958	1	0.84765	1	0.83511	1
13q loss	0 (0%)	223	0.0039796	1	0.41642	1	0.17234	1	0.65644	1	0.38892	1	0.60893	1	0.12115	1	0.23557	1	0.14717	1	0.097472	1
14q loss	0 (0%)	202	1.226e-07	9.43e-05	0.071852	1	0.41145	1	0.27586	1	0.0039697	1	0.32775	1	0.52198	1	0.43607	1	0.45939	1	0.45783	1
15q loss	0 (0%)	245	0.051838	1	0.1138	1	0.6509	1	0.13763	1	0.6315	1	0.8843	1	0.20833	1	0.056783	1	0.31314	1	0.13606	1
16p loss	0 (0%)	237	0.047453	1	0.033266	1	0.95625	1	0.2043	1	0.31325	1	0.39033	1	0.10884	1	0.32057	1	0.084326	1	0.22133	1
16q loss	0 (0%)	213	0.0012217	0.885	0.088975	1	0.57131	1	0.37339	1	0.021321	1	0.079051	1	0.13437	1	0.14584	1	0.11653	1	0.082396	1
17p loss	0 (0%)	209	0.2006	1	0.082374	1	0.39808	1	0.6542	1	0.085329	1	1	1	0.59519	1	0.45783	1	0.025723	1	0.6562	1
17q loss	0 (0%)	238	0.015981	1	0.29938	1	0.38701	1	0.47028	1	0.055336	1	0.56177	1	0.66312	1	1	1	0.44285	1	0.71292	1
18p loss	0 (0%)	211	0.0076121	1	0.0019853	1	0.37245	1	0.41519	1	0.00088574	0.643	0.047288	1	0.97838	1	0.81545	1	0.20791	1	0.72748	1
18q loss	0 (0%)	215	0.012106	1	0.0081957	1	0.050228	1	0.18768	1	0.093366	1	0.54979	1	0.93157	1	0.66577	1	0.95524	1	0.84335	1
19p loss	0 (0%)	241	0.062817	1	0.57362	1	0.0057819	1	0.53606	1	0.14857	1	0.13702	1	0.48462	1	0.64079	1	0.30737	1	0.23444	1
19q loss	0 (0%)	241	0.080414	1	0.36985	1	0.65383	1	0.3467	1	0.37648	1	0.54416	1	0.68458	1	0.64079	1	0.82895	1	0.23444	1
20p loss	0 (0%)	247	0.080333	1	0.62602	1	0.15262	1	0.74441	1	0.61524	1	0.28798	1	0.085783	1	0.45916	1	0.39158	1	0.65924	1
20q loss	0 (0%)	257	0.49701	1	0.26135	1	NA	NA	NA	NA	0.63565	1	0.30349	1	0.79261	1	1	1	0.63321	1	1	1
21q loss	0 (0%)	229	0.01206	1	0.07321	1	0.823	1	0.63417	1	0.43599	1	0.75149	1	0.90331	1	0.55228	1	0.10512	1	0.57983	1
22q loss	0 (0%)	240	0.02228	1	0.19527	1	0.59089	1	0.42806	1	0.80173	1	0.48494	1	0.075795	1	0.52143	1	0.54166	1	0.25561	1
Xq loss	0 (0%)	250	0.55901	1	0.0044583	1	0.28298	1	0.18795	1	0.33545	1	0.061622	1	0.2433	1	0.50134	1	0.073961	1	1	1