Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p12)	0 (0%)	182	0.046701	1	0.35653	1	0.37927	1	0.4039	1	0.10939	1	0.39632	1	0.72041	1	0.74418	1	0.40931	1	0.58037	1
Amp Peak  2(1q44)	0 (0%)	123	5.773e-05	0.0299	0.0033932	1	0.9431	1	0.94952	1	0.20911	1	0.56552	1	0.15322	1	0.074542	1	0.19572	1	0.04716	1
Amp Peak  3(3p13)	0 (0%)	193	0.45589	1	0.67907	1	0.37625	1	0.12347	1	0.82111	1	0.54641	1	1	1	0.48985	1	1	1	0.4364	1
Amp Peak  4(4q12)	0 (0%)	212	0.0067536	1	0.25893	1	0.2935	1	0.31317	1	0.81649	1	0.35764	1	0.06878	1	0.013609	1	0.054625	1	0.018587	1
Amp Peak  5(5p15.33)	0 (0%)	181	1.9286e-07	0.000103	0.24425	1	0.054815	1	0.55896	1	0.52542	1	0.20903	1	0.012527	1	0.17433	1	0.0012193	0.606	0.20442	1
Amp Peak  6(5q35.3)	0 (0%)	219	4.2534e-07	0.000226	0.00088557	0.446	0.56422	1	0.34181	1	0.25289	1	0.098488	1	0.10437	1	0.19506	1	0.19483	1	0.20192	1
Amp Peak  7(6p25.1)	0 (0%)	113	2.0606e-06	0.00109	0.00069254	0.35	0.0079811	1	0.54198	1	0.085629	1	0.0048491	1	0.0015283	0.757	1.0461e-05	0.00547	0.025789	1	5.9189e-06	0.00311
Amp Peak  8(6q12)	0 (0%)	201	0.73428	1	0.56579	1	0.58714	1	0.42721	1	0.068815	1	0.42838	1	0.32719	1	0.23822	1	0.8903	1	0.12382	1
Amp Peak  9(7p22.3)	0 (0%)	122	7.7523e-10	4.16e-07	0.32749	1	0.65003	1	0.92417	1	0.097928	1	0.24974	1	0.95799	1	0.46778	1	0.93232	1	0.76541	1
Amp Peak 10(7q34)	0 (0%)	107	9.1482e-07	0.000484	0.23853	1	0.24937	1	0.54551	1	0.21711	1	0.35944	1	0.34329	1	0.30173	1	0.30875	1	0.35321	1
Amp Peak 11(8q11.21)	0 (0%)	148	9.7143e-06	0.00509	0.0034339	1	0.68728	1	0.64482	1	0.036719	1	0.31998	1	0.35005	1	0.87197	1	0.1028	1	0.8448	1
Amp Peak 12(8q24.21)	0 (0%)	130	1.1441e-07	6.1e-05	0.0031473	1	0.52927	1	0.8897	1	0.035708	1	0.67848	1	0.47556	1	0.3862	1	0.27567	1	0.83163	1
Amp Peak 13(9p24.1)	0 (0%)	238	0.75203	1	0.51603	1	0.71095	1	0.81546	1	0.61291	1	0.56037	1	0.26228	1	0.8412	1	0.19194	1	0.52987	1
Amp Peak 14(11q13.3)	0 (0%)	210	0.0011499	0.574	0.20882	1	0.73268	1	0.95615	1	0.89558	1	1	1	0.49878	1	0.32601	1	0.77843	1	0.56725	1
Amp Peak 15(11q13.4)	0 (0%)	214	0.00056405	0.286	0.054894	1	0.96816	1	0.96764	1	0.53164	1	0.60189	1	0.2628	1	0.13691	1	0.41137	1	0.7801	1
Amp Peak 16(12q14.1)	0 (0%)	217	0.00025864	0.132	0.48536	1	0.62023	1	0.50836	1	0.3997	1	0.047315	1	0.90531	1	0.69491	1	0.86412	1	0.72497	1
Amp Peak 17(12q15)	0 (0%)	219	0.0042467	1	1	1	0.40803	1	0.51993	1	0.71635	1	0.58773	1	0.94967	1	0.61514	1	0.95077	1	0.89447	1
Amp Peak 18(15q26.2)	0 (0%)	171	0.0024953	1	0.69843	1	0.86053	1	0.64134	1	0.54372	1	0.24472	1	0.80134	1	0.26947	1	0.41987	1	0.50556	1
Amp Peak 19(17q25.3)	0 (0%)	169	9.5314e-05	0.0493	0.0027331	1	0.020398	1	0.14853	1	0.25681	1	0.2326	1	0.087973	1	0.032986	1	0.016745	1	0.0096378	1
Amp Peak 20(19p13.2)	0 (0%)	208	0.06849	1	0.21092	1	0.75768	1	0.33009	1	0.026529	1	0.010885	1	0.35105	1	0.089955	1	0.042738	1	0.030485	1
Amp Peak 21(20q13.33)	0 (0%)	128	3.405e-05	0.0177	0.01954	1	0.77116	1	0.99987	1	0.012262	1	0.32092	1	0.62343	1	0.24924	1	0.056067	1	0.15589	1
Amp Peak 22(22q13.2)	0 (0%)	153	1.7899e-10	9.61e-08	0.028457	1	0.74548	1	0.78913	1	0.80928	1	0.88433	1	0.41929	1	0.53556	1	0.3068	1	0.37803	1
Del Peak  1(1p36.31)	0 (0%)	199	0.1431	1	0.00011555	0.0595	0.13388	1	0.41896	1	0.20591	1	0.0063149	1	0.44223	1	0.33753	1	0.63394	1	0.27604	1
Del Peak  2(1p22.1)	0 (0%)	195	0.020637	1	0.00031152	0.158	0.76003	1	0.30081	1	0.0015128	0.75	0.052533	1	0.51239	1	0.70943	1	0.27975	1	0.47396	1
Del Peak  3(2q37.3)	0 (0%)	193	0.06551	1	0.04722	1	0.43321	1	0.24585	1	0.044771	1	0.027061	1	0.071668	1	0.034577	1	0.065633	1	0.031278	1
Del Peak  4(3q23)	0 (0%)	220	0.78504	1	0.028382	1	0.8454	1	0.90276	1	0.576	1	0.51943	1	0.60684	1	0.6921	1	1	1	0.44978	1
Del Peak  5(4p16.3)	0 (0%)	198	0.88422	1	0.5002	1	0.40601	1	0.91031	1	0.021428	1	0.21978	1	0.58426	1	0.38542	1	0.12063	1	0.3001	1
Del Peak  6(4q34.3)	0 (0%)	190	0.016376	1	0.18298	1	0.65759	1	0.7692	1	0.012384	1	0.0077112	1	0.014196	1	0.0032366	1	0.0079682	1	0.0024195	1
Del Peak  7(5p15.31)	0 (0%)	206	0.095804	1	0.15297	1	0.37709	1	0.17907	1	0.28588	1	0.42095	1	0.36475	1	0.21913	1	0.47296	1	0.05973	1
Del Peak  8(5q11.2)	0 (0%)	190	3.1567e-08	1.69e-05	0.082676	1	0.046502	1	0.22734	1	0.68672	1	0.70276	1	0.77717	1	0.52443	1	0.24372	1	0.49645	1
Del Peak  9(5q31.3)	0 (0%)	165	7.8591e-08	4.2e-05	0.00011131	0.0574	0.12494	1	0.82331	1	0.91594	1	0.7508	1	0.51079	1	0.33435	1	0.2636	1	0.33869	1
Del Peak 10(6q22.31)	0 (0%)	104	1.3349e-13	7.2e-11	0.042598	1	0.29194	1	0.45312	1	0.0010677	0.534	0.68829	1	0.83529	1	0.83621	1	0.70407	1	0.37215	1
Del Peak 11(6q25.3)	0 (0%)	95	1.4014e-11	7.54e-09	0.13564	1	0.18695	1	0.73399	1	0.0011961	0.596	0.6232	1	0.93957	1	0.97956	1	0.95529	1	0.62674	1
Del Peak 12(6q26)	0 (0%)	98	1.7148e-14	9.26e-12	0.089982	1	0.36723	1	0.78222	1	0.0009489	0.477	0.72563	1	0.70311	1	0.94102	1	0.81057	1	0.76843	1
Del Peak 13(8p22)	0 (0%)	196	0.046781	1	0.26989	1	0.092255	1	0.33478	1	0.17048	1	0.83836	1	0.3508	1	0.58895	1	0.18003	1	0.28454	1
Del Peak 14(9p23)	0 (0%)	83	2.6021e-05	0.0136	0.013327	1	0.84151	1	0.55497	1	0.005918	1	0.036438	1	0.87701	1	0.39842	1	0.50914	1	0.88877	1
Del Peak 15(9p21.3)	0 (0%)	60	6.7349e-07	0.000357	0.00059649	0.302	0.74887	1	0.12661	1	0.00014649	0.0753	0.010226	1	0.96076	1	0.60247	1	0.90662	1	0.91808	1
Del Peak 16(10p15.3)	0 (0%)	119	0.00016179	0.083	0.0071575	1	0.48052	1	0.78734	1	2.7608e-06	0.00145	0.00028902	0.147	0.11624	1	0.25869	1	0.85645	1	0.36896	1
Del Peak 17(10q23.31)	0 (0%)	101	2.8303e-05	0.0147	0.042813	1	0.21405	1	0.73182	1	0.00016499	0.0845	0.0015805	0.781	0.73938	1	0.71271	1	0.72261	1	0.70818	1
Del Peak 18(10q26.3)	0 (0%)	98	0.003121	1	0.17534	1	0.40015	1	0.82999	1	3.5854e-06	0.00189	0.00019504	0.0997	0.20665	1	0.85175	1	0.54318	1	0.8768	1
Del Peak 19(11q23.3)	0 (0%)	119	1.762e-05	0.0092	0.095027	1	0.22742	1	0.46408	1	0.2823	1	0.59901	1	0.1452	1	0.12956	1	0.092401	1	0.053056	1
Del Peak 20(12p13.31)	0 (0%)	220	0.40276	1	0.27427	1	0.36295	1	0.78696	1	0.1965	1	0.48088	1	0.71621	1	0.86395	1	0.5819	1	0.788	1
Del Peak 21(12q23.3)	0 (0%)	198	0.20812	1	0.013288	1	0.58942	1	0.49224	1	0.8449	1	0.35334	1	0.6689	1	0.49933	1	0.80549	1	0.42043	1
Del Peak 22(13q12.11)	0 (0%)	202	0.0019776	0.975	0.45673	1	0.53239	1	0.5554	1	0.98075	1	0.72617	1	0.083309	1	0.016558	1	0.17529	1	0.070249	1
Del Peak 23(13q34)	0 (0%)	201	0.0085126	1	0.0039496	1	0.077994	1	0.78531	1	0.96289	1	0.21529	1	0.82006	1	0.1063	1	0.79262	1	0.36802	1
Del Peak 24(14q32.2)	0 (0%)	172	0.00097526	0.489	0.71812	1	0.16205	1	0.41927	1	0.018422	1	0.66188	1	0.78628	1	0.68174	1	0.93922	1	0.77799	1
Del Peak 25(15q13.3)	0 (0%)	200	0.33337	1	0.10273	1	0.39265	1	0.6563	1	0.62319	1	0.21797	1	0.41042	1	0.4051	1	0.49371	1	0.68047	1
Del Peak 26(15q15.1)	0 (0%)	196	0.18395	1	0.028486	1	0.38185	1	0.50063	1	0.72238	1	0.47123	1	0.24731	1	0.09211	1	0.56918	1	0.4737	1
Del Peak 27(16p13.3)	0 (0%)	211	0.50273	1	0.04959	1	0.19945	1	0.40752	1	0.32877	1	0.6812	1	0.37342	1	0.55498	1	0.24796	1	0.41684	1
Del Peak 28(16q12.1)	0 (0%)	176	0.22747	1	0.50645	1	0.015096	1	0.54677	1	0.17936	1	0.34765	1	0.14745	1	0.1434	1	0.30111	1	0.054327	1
Del Peak 29(16q24.3)	0 (0%)	168	0.037239	1	0.6189	1	0.33124	1	0.82795	1	0.012239	1	0.18015	1	0.071349	1	0.054261	1	0.14211	1	0.047431	1
Del Peak 30(17q21.31)	0 (0%)	202	0.13297	1	0.27548	1	0.10727	1	0.49996	1	0.62319	1	0.69545	1	0.64102	1	0.36166	1	0.53678	1	0.39824	1
Del Peak 31(19p13.3)	0 (0%)	185	0.00095551	0.48	0.5086	1	0.0060741	1	0.021335	1	0.0045109	1	0.15587	1	0.8563	1	0.40052	1	0.34539	1	0.18717	1
Del Peak 32(22q12.1)	0 (0%)	222	0.33302	1	0.58384	1	0.36363	1	0.35542	1	0.43105	1	0.70997	1	0.010081	1	0.25309	1	0.085682	1	0.24969	1