name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-D3-A1Q1-06A-21D-A196-08	94	93	1	78	1.063830e-02	0	coding only	34834024	15	78	4.306135e-07	2.239190e-06
TCGA-D3-A1Q3-06A-11D-A196-08	160	159	1	136	6.250000e-03	0	coding only	34834024	20	135	5.741513e-07	3.875521e-06
TCGA-D3-A1Q4-06A-11D-A196-08	332	322	10	213	3.012048e-02	1	exome+100bp flanks	34834024	108	211	3.100417e-06	6.057296e-06
TCGA-D3-A1Q5-06A-11D-A196-08	450	440	10	299	2.222222e-02	0	coding only	34834024	137	293	3.932936e-06	8.411316e-06
TCGA-D3-A1Q6-06A-11D-A196-08	1069	1050	19	671	1.777362e-02	0	coding only	34834024	373	662	1.070792e-05	1.900441e-05
TCGA-D3-A1Q7-06A-11D-A19A-08	131	129	2	81	1.526718e-02	0	coding only	34834024	48	78	1.377963e-06	2.239190e-06
TCGA-D3-A1Q8-06A-11D-A19A-08	290	285	5	190	1.724138e-02	0	coding only	34834024	95	186	2.727219e-06	5.339607e-06
TCGA-D3-A1Q9-06A-11D-A19A-08	48	45	3	36	6.250000e-02	0	coding only	34834024	9	32	2.583681e-07	9.186421e-07
TCGA-D3-A1QA-06A-11D-A196-08	603	588	15	390	2.487562e-02	0	coding only	34834024	196	383	5.626683e-06	1.099500e-05
TCGA-D3-A1QB-06A-11D-A19A-08	462	451	11	301	2.380952e-02	0	coding only	34834024	147	297	4.220012e-06	8.526147e-06
TCGA-D3-A2J6-06A-11D-A19A-08	117	113	4	95	3.418803e-02	0	coding only	34834024	17	92	4.880286e-07	2.641096e-06
TCGA-D3-A2J7-06A-11D-A196-08	428	414	14	293	3.271028e-02	1	exome+100bp flanks	34834024	119	286	3.416200e-06	8.210364e-06
TCGA-D3-A2J8-06A-11D-A196-08	795	786	9	508	1.132075e-02	0	coding only	34834024	275	505	7.894580e-06	1.449732e-05
TCGA-D3-A2J9-06A-11D-A196-08	106	106	0	64	0	0	coding only	34834024	42	61	1.205718e-06	1.751161e-06
TCGA-D3-A2JA-06A-11D-A196-08	448	436	12	299	2.678571e-02	0	coding only	34834024	134	292	3.846814e-06	8.382609e-06
TCGA-D3-A2JB-06A-11D-A196-08	62	62	0	55	0	0	coding only	34834024	5	54	1.435378e-07	1.550208e-06
TCGA-D3-A2JC-06A-11D-A19A-08	296	293	3	207	1.013514e-02	0	coding only	34834024	86	204	2.468851e-06	5.856343e-06
TCGA-D3-A2JD-06A-11D-A19A-08	512	504	8	338	1.562500e-02	0	coding only	34834024	166	331	4.765456e-06	9.502204e-06
TCGA-D3-A2JF-06A-11D-A196-08	1770	1734	36	1190	2.033898e-02	0	coding only	34834024	540	1178	1.550208e-05	3.381751e-05
TCGA-D3-A2JG-06A-11D-A196-08	146	143	3	96	2.054795e-02	0	coding only	34834024	45	95	1.291840e-06	2.727219e-06
TCGA-D3-A2JH-06A-11D-A196-08	802	789	13	531	1.620948e-02	0	coding only	34834024	253	527	7.263014e-06	1.512889e-05
TCGA-D3-A2JK-06A-11D-A196-08	378	372	6	254	1.587302e-02	0	coding only	34834024	118	250	3.387493e-06	7.176891e-06
TCGA-D3-A2JL-06A-11D-A196-08	463	456	7	331	1.511879e-02	0	coding only	34834024	121	326	3.473615e-06	9.358666e-06
TCGA-D3-A2JN-06A-11D-A196-08	438	430	8	303	1.826484e-02	0	coding only	34834024	126	296	3.617153e-06	8.497439e-06
TCGA-D3-A2JO-06A-11D-A196-08	809	787	22	540	2.719407e-02	0	coding only	34834024	247	534	7.090768e-06	1.532984e-05
TCGA-D3-A2JP-06A-11D-A19A-08	348	342	6	249	1.724138e-02	0	coding only	34834024	91	242	2.612388e-06	6.947231e-06
TCGA-D3-A3BZ-06A-12D-A196-08	86	85	1	72	1.162791e-02	0	coding only	34834024	12	71	3.444908e-07	2.038237e-06
TCGA-D3-A3C1-06A-12D-A196-08	187	183	4	130	2.139037e-02	0	coding only	34834024	53	129	1.521501e-06	3.703276e-06
TCGA-D3-A3C3-06A-12D-A19A-08	319	311	8	217	2.507837e-02	0	coding only	34834024	93	217	2.669804e-06	6.229542e-06
TCGA-D3-A3C6-06A-12D-A196-08	156	154	2	103	1.282051e-02	0	coding only	34834024	48	102	1.377963e-06	2.928172e-06
TCGA-D3-A3C7-06A-11D-A196-08	1162	1142	20	793	1.721170e-02	0	coding only	34834024	346	786	9.932817e-06	2.256415e-05
TCGA-D3-A3C8-06A-12D-A19A-08	888	877	11	595	1.238739e-02	0	coding only	34834024	280	590	8.038118e-06	1.693746e-05
TCGA-D3-A3CB-06A-11D-A196-08	335	328	7	217	2.089552e-02	0	coding only	34834024	111	214	3.186540e-06	6.143419e-06
TCGA-D3-A3CC-06A-11D-A19A-08	47	44	3	35	6.382979e-02	0	coding only	34834024	9	34	2.583681e-07	9.760572e-07
TCGA-D3-A3CE-06A-11D-A19A-08	91	89	2	75	2.197802e-02	0	coding only	34834024	13	73	3.731983e-07	2.095652e-06
TCGA-D3-A3CF-06A-11D-A196-08	47	47	0	39	0	0	coding only	34834024	8	34	2.296605e-07	9.760572e-07
TCGA-D3-A3ML-06A-11D-A21A-08	1151	1127	24	753	2.085143e-02	0	coding only	34834024	368	739	1.056438e-05	2.121489e-05
TCGA-D3-A3MO-06A-11D-A21A-08	89	86	3	63	3.370787e-02	0	coding only	34834024	23	62	6.602740e-07	1.779869e-06
TCGA-D3-A3MR-06A-11D-A21A-08	1083	1060	23	714	2.123730e-02	0	coding only	34834024	342	707	9.817987e-06	2.029625e-05
TCGA-D3-A3MU-06A-11D-A21A-08	597	585	12	404	2.010050e-02	0	coding only	34834024	178	395	5.109947e-06	1.133949e-05
TCGA-D3-A3MV-06A-11D-A21A-08	671	656	15	411	2.235469e-02	0	coding only	34834024	243	404	6.975938e-06	1.159786e-05
TCGA-D9-A148-06A-11D-A19A-08	368	356	12	242	3.260870e-02	1	exome+100bp flanks	34834024	110	237	3.157832e-06	6.803693e-06
TCGA-D9-A149-06A-11D-A196-08	296	292	4	207	1.351351e-02	0	coding only	34834024	85	204	2.440143e-06	5.856343e-06
TCGA-D9-A1JW-06A-11D-A19A-08	1128	1107	21	740	1.861702e-02	0	coding only	34834024	363	732	1.042085e-05	2.101394e-05
TCGA-D9-A1JX-06A-11D-A19A-08	233	226	7	160	3.004292e-02	1	exome+100bp flanks	34834024	65	159	1.865992e-06	4.564503e-06
TCGA-D9-A3Z1-06A-11D-A23B-08	631	617	14	401	2.218700e-02	0	coding only	34834024	213	398	6.114711e-06	1.142561e-05
TCGA-D9-A3Z3-06A-11D-A23B-08	171	166	5	114	2.923977e-02	0	coding only	34834024	50	111	1.435378e-06	3.186540e-06
TCGA-DA-A1HV-06A-21D-A196-08	1703	1674	29	1110	1.702877e-02	0	coding only	34834024	558	1097	1.601882e-05	3.149220e-05
TCGA-DA-A1HW-06A-11D-A19A-08	411	404	7	260	1.703163e-02	0	coding only	34834024	141	257	4.047767e-06	7.377844e-06
TCGA-DA-A1HY-06A-11D-A19A-08	904	886	18	600	1.991150e-02	0	coding only	34834024	280	590	8.038118e-06	1.693746e-05
TCGA-DA-A1I0-06A-11D-A20D-08	636	618	18	417	2.830189e-02	0	coding only	34834024	199	408	5.712805e-06	1.171269e-05
TCGA-DA-A1I1-06A-12D-A196-08	496	488	8	348	1.612903e-02	0	coding only	34834024	137	345	3.932936e-06	9.904110e-06
TCGA-DA-A1I2-06A-21D-A19A-08	167	162	5	110	2.994012e-02	0	coding only	34834024	50	109	1.435378e-06	3.129125e-06
TCGA-DA-A1I4-06A-11D-A196-08	313	307	6	219	1.916933e-02	0	coding only	34834024	88	216	2.526266e-06	6.200834e-06
TCGA-DA-A1I5-06A-11D-A197-08	552	548	4	371	7.246377e-03	0	coding only	34834024	174	369	4.995116e-06	1.059309e-05
TCGA-DA-A1I7-06A-22D-A197-08	574	564	10	372	1.742160e-02	0	coding only	34834024	189	365	5.425730e-06	1.047826e-05
TCGA-DA-A1I8-06A-11D-A197-08	237	231	6	140	2.531646e-02	0	coding only	34834024	91	135	2.612388e-06	3.875521e-06
TCGA-DA-A1IA-06A-11D-A196-08	415	410	5	265	1.204819e-02	0	coding only	34834024	144	263	4.133889e-06	7.550090e-06
TCGA-DA-A1IB-06A-11D-A196-08	62	61	1	55	1.612903e-02	0	coding only	34834024	6	55	1.722454e-07	1.578916e-06
TCGA-DA-A1IC-06A-11D-A197-08	1192	1168	24	781	2.013423e-02	0	coding only	34834024	384	765	1.102370e-05	2.196129e-05
TCGA-DA-A3F2-06A-11D-A20D-08	9	8	1	5	1.111111e-01	0	coding only	34834024	2	5	5.741513e-08	1.435378e-07
TCGA-DA-A3F3-06A-11D-A20D-08	381	370	11	263	2.887139e-02	0	coding only	34834024	104	260	2.985587e-06	7.463967e-06
TCGA-DA-A3F5-06A-11D-A20D-08	422	412	10	283	2.369668e-02	0	coding only	34834024	128	281	3.674568e-06	8.066826e-06
TCGA-DA-A3F8-06A-11D-A20D-08	1481	1462	19	962	1.282917e-02	0	coding only	34834024	492	945	1.412412e-05	2.712865e-05
TCGA-EE-A17X-06A-11D-A197-08	985	960	25	654	2.538071e-02	0	coding only	34834024	299	647	8.583562e-06	1.857379e-05
TCGA-EE-A17Y-06A-11D-A196-08	215	213	2	143	9.302326e-03	0	coding only	34834024	69	137	1.980822e-06	3.932936e-06
TCGA-EE-A17Z-06A-11D-A196-08	53	50	3	44	5.660377e-02	0	coding only	34834024	6	41	1.722454e-07	1.177010e-06
TCGA-EE-A180-06A-11D-A21A-08	670	654	16	456	2.388060e-02	0	coding only	34834024	198	442	5.684098e-06	1.268874e-05
TCGA-EE-A181-06A-11D-A196-08	3694	3654	40	2428	1.082837e-02	0	coding only	34834024	1209	2410	3.470745e-05	6.918523e-05
TCGA-EE-A182-06A-11D-A196-08	1857	1812	45	1181	2.423263e-02	0	coding only	34834024	625	1153	1.794223e-05	3.309982e-05
TCGA-EE-A183-06A-11D-A196-08	968	951	17	664	1.756198e-02	0	coding only	34834024	280	653	8.038118e-06	1.874604e-05
TCGA-EE-A184-06A-11D-A196-08	405	398	7	291	1.728395e-02	0	coding only	34834024	103	288	2.956879e-06	8.267779e-06
TCGA-EE-A185-06A-11D-A196-08	246	238	8	160	3.252033e-02	1	exome+100bp flanks	34834024	76	157	2.181775e-06	4.507088e-06
TCGA-EE-A20B-06A-11D-A196-08	230	225	5	157	2.173913e-02	0	coding only	34834024	66	154	1.894699e-06	4.420965e-06
TCGA-EE-A20C-06A-11D-A196-08	2518	2480	38	1664	1.509134e-02	0	coding only	34834024	809	1650	2.322442e-05	4.736748e-05
TCGA-EE-A20F-06A-21D-A196-08	644	627	17	418	2.639752e-02	0	coding only	34834024	206	416	5.913758e-06	1.194235e-05
TCGA-EE-A20H-06A-11D-A197-08	747	724	23	509	3.078983e-02	1	exome+100bp flanks	34834024	214	492	6.143419e-06	1.412412e-05
TCGA-EE-A20I-06A-11D-A196-08	38	33	5	24	1.315789e-01	0	coding only	34834024	9	24	2.583681e-07	6.889816e-07
TCGA-EE-A29A-06A-12D-A196-08	315	309	6	212	1.904762e-02	0	coding only	34834024	95	209	2.727219e-06	5.999881e-06
TCGA-EE-A29B-06A-11D-A197-08	682	670	12	467	1.759531e-02	0	coding only	34834024	199	465	5.712805e-06	1.334902e-05
TCGA-EE-A29C-06A-21D-A197-08	503	498	5	335	9.940358e-03	0	coding only	34834024	162	332	4.650625e-06	9.530912e-06
TCGA-EE-A29D-06A-11D-A197-08	4732	4623	109	3005	2.303466e-02	0	coding only	34834024	1596	2958	4.581727e-05	8.491698e-05
TCGA-EE-A29E-06A-11D-A197-08	4405	4315	90	2824	2.043133e-02	0	coding only	34834024	1475	2776	4.234366e-05	7.969220e-05
TCGA-EE-A29G-06A-12D-A196-08	498	490	8	328	1.606426e-02	0	coding only	34834024	162	321	4.650625e-06	9.215128e-06
TCGA-EE-A29H-06A-12D-A197-08	396	383	13	257	3.282828e-02	1	exome+100bp flanks	34834024	125	253	3.588446e-06	7.263014e-06
TCGA-EE-A29L-06A-12D-A196-08	2481	2434	47	1595	1.894397e-02	0	coding only	34834024	824	1577	2.365503e-05	4.527183e-05
TCGA-EE-A29M-06A-11D-A196-08	2893	2838	55	1913	1.901141e-02	0	coding only	34834024	911	1876	2.615259e-05	5.385539e-05
TCGA-EE-A29N-06A-12D-A197-08	770	755	15	515	1.948052e-02	0	coding only	34834024	235	501	6.746278e-06	1.438249e-05
TCGA-EE-A29P-06A-11D-A197-08	387	383	4	255	1.033592e-02	0	coding only	34834024	126	247	3.617153e-06	7.090768e-06
TCGA-EE-A29Q-06A-11D-A197-08	380	375	5	245	1.315789e-02	0	coding only	34834024	129	241	3.703276e-06	6.918523e-06
TCGA-EE-A29R-06A-11D-A197-08	863	848	15	542	1.738123e-02	0	coding only	34834024	302	530	8.669685e-06	1.521501e-05
TCGA-EE-A29S-06A-11D-A197-08	1323	1298	25	855	1.889645e-02	0	coding only	34834024	436	839	1.251650e-05	2.408565e-05
TCGA-EE-A29V-06A-12D-A197-08	1251	1230	21	809	1.678657e-02	0	coding only	34834024	413	803	1.185622e-05	2.305217e-05
TCGA-EE-A29W-06A-11D-A196-08	98	97	1	69	1.020408e-02	0	coding only	34834024	28	69	8.038118e-07	1.980822e-06
TCGA-EE-A29X-06A-11D-A196-08	196	191	5	124	2.551020e-02	0	coding only	34834024	67	122	1.923407e-06	3.502323e-06
TCGA-EE-A2A0-06A-11D-A196-08	482	473	9	352	1.867220e-02	0	coding only	34834024	118	347	3.387493e-06	9.961525e-06
TCGA-EE-A2A1-06A-11D-A197-08	485	479	6	332	1.237113e-02	0	coding only	34834024	147	325	4.220012e-06	9.329959e-06
TCGA-EE-A2A2-06A-11D-A196-08	2104	2065	39	1463	1.853612e-02	0	coding only	34834024	590	1440	1.693746e-05	4.133889e-05
TCGA-EE-A2A5-06A-11D-A197-08	397	389	8	271	2.015113e-02	0	coding only	34834024	116	268	3.330078e-06	7.693627e-06
TCGA-EE-A2A6-06A-11D-A197-08	376	370	6	242	1.595745e-02	0	coding only	34834024	125	240	3.588446e-06	6.889816e-06
TCGA-EE-A2GB-06A-11D-A197-08	812	798	14	547	1.724138e-02	0	coding only	34834024	245	539	7.033353e-06	1.547338e-05
TCGA-EE-A2GC-06A-11D-A197-08	2829	2777	52	1852	1.838105e-02	0	coding only	34834024	910	1825	2.612388e-05	5.239131e-05
TCGA-EE-A2GD-06A-11D-A196-08	702	684	18	464	2.564103e-02	0	coding only	34834024	219	458	6.286957e-06	1.314806e-05
TCGA-EE-A2GE-06A-11D-A196-08	308	303	5	206	1.623377e-02	0	coding only	34834024	96	202	2.755926e-06	5.798928e-06
TCGA-EE-A2GH-06A-11D-A196-08	420	413	7	291	1.666667e-02	0	coding only	34834024	121	285	3.473615e-06	8.181656e-06
TCGA-EE-A2GI-06A-11D-A196-08	1965	1928	37	1269	1.882952e-02	0	coding only	34834024	655	1251	1.880345e-05	3.591316e-05
TCGA-EE-A2GJ-06A-11D-A196-08	1430	1405	25	895	1.748252e-02	0	coding only	34834024	500	881	1.435378e-05	2.529136e-05
TCGA-EE-A2GK-06A-11D-A196-08	24	22	2	20	8.333333e-02	0	coding only	34834024	0	16	0	4.593210e-07
TCGA-EE-A2GL-06A-11D-A196-08	453	444	9	296	1.986755e-02	0	coding only	34834024	146	292	4.191304e-06	8.382609e-06
TCGA-EE-A2GM-06B-11D-A196-08	870	851	19	575	2.183908e-02	0	coding only	34834024	273	568	7.837165e-06	1.630590e-05
TCGA-EE-A2GN-06A-11D-A196-08	518	508	10	365	1.930502e-02	0	coding only	34834024	141	363	4.047767e-06	1.042085e-05
TCGA-EE-A2GO-06A-11D-A196-08	2500	2449	51	1567	2.040000e-02	0	coding only	34834024	869	1539	2.494687e-05	4.418094e-05
TCGA-EE-A2GP-06A-11D-A197-08	795	783	12	517	1.509434e-02	0	coding only	34834024	259	512	7.435259e-06	1.469827e-05
TCGA-EE-A2GR-06A-11D-A197-08	1995	1951	44	1283	2.205514e-02	0	coding only	34834024	662	1271	1.900441e-05	3.648731e-05
TCGA-EE-A2GS-06A-12D-A197-08	422	405	17	280	4.028436e-02	1	exome+100bp flanks	34834024	124	275	3.559738e-06	7.894580e-06
TCGA-EE-A2GT-06A-12D-A197-08	452	443	9	309	1.991150e-02	0	coding only	34834024	134	304	3.846814e-06	8.727100e-06
TCGA-EE-A2GU-06A-11D-A196-08	754	737	17	496	2.254642e-02	0	coding only	34834024	237	482	6.803693e-06	1.383705e-05
TCGA-EE-A2M5-06A-12D-A197-08	2430	2386	44	1606	1.810700e-02	0	coding only	34834024	772	1587	2.216224e-05	4.555891e-05
TCGA-EE-A2M6-06A-12D-A197-08	678	665	13	459	1.917404e-02	0	coding only	34834024	205	451	5.885051e-06	1.294711e-05
TCGA-EE-A2M7-06A-11D-A197-08	106	102	4	67	3.773585e-02	0	coding only	34834024	35	66	1.004765e-06	1.894699e-06
TCGA-EE-A2M8-06A-12D-A196-08	153	150	3	100	1.960784e-02	0	coding only	34834024	49	97	1.406671e-06	2.784634e-06
TCGA-EE-A2MC-06A-12D-A197-08	959	940	19	625	1.981230e-02	0	coding only	34834024	311	619	8.928053e-06	1.776998e-05
TCGA-EE-A2MD-06A-11D-A197-08	2124	2093	31	1371	1.459510e-02	0	coding only	34834024	713	1350	2.046849e-05	3.875521e-05
TCGA-EE-A2ME-06A-11D-A197-08	107	105	2	76	1.869159e-02	0	coding only	34834024	28	76	8.038118e-07	2.181775e-06
TCGA-EE-A2MF-06A-11D-A21A-08	956	936	20	633	2.092050e-02	0	coding only	34834024	301	626	8.640977e-06	1.797094e-05
TCGA-EE-A2MG-06A-11D-A197-08	281	274	7	186	2.491103e-02	0	coding only	34834024	85	184	2.440143e-06	5.282192e-06
TCGA-EE-A2MH-06A-11D-A197-08	202	194	8	116	3.960396e-02	1	exome+100bp flanks	34834024	77	112	2.210482e-06	3.215247e-06
TCGA-EE-A2MI-06A-11D-A197-08	1334	1299	35	856	2.623688e-02	0	coding only	34834024	438	846	1.257391e-05	2.428660e-05
TCGA-EE-A2MJ-06A-11D-A197-08	2830	2783	47	1864	1.660777e-02	0	coding only	34834024	909	1842	2.609518e-05	5.287933e-05
TCGA-EE-A2MK-06A-11D-A196-08	381	372	9	246	2.362205e-02	0	coding only	34834024	124	238	3.559738e-06	6.832400e-06
TCGA-EE-A2ML-06A-11D-A197-08	693	678	15	457	2.164502e-02	0	coding only	34834024	217	446	6.229542e-06	1.280357e-05
TCGA-EE-A2MM-06A-11D-A196-08	712	699	13	459	1.825843e-02	0	coding only	34834024	235	451	6.746278e-06	1.294711e-05
TCGA-EE-A2MN-06A-11D-A197-08	198	190	8	121	4.040404e-02	1	exome+100bp flanks	34834024	66	120	1.894699e-06	3.444908e-06
TCGA-EE-A2MP-06A-11D-A197-08	347	338	9	248	2.593660e-02	0	coding only	34834024	89	247	2.554973e-06	7.090768e-06
TCGA-EE-A2MQ-06A-11D-A197-08	340	338	2	228	5.882353e-03	0	coding only	34834024	108	224	3.100417e-06	6.430495e-06
TCGA-EE-A2MR-06A-11D-A196-08	6329	6257	72	3892	1.137620e-02	0	coding only	34834024	2348	3829	6.740536e-05	1.099213e-04
TCGA-EE-A2MS-06A-11D-A197-08	3546	3489	57	2259	1.607445e-02	0	coding only	34834024	1213	2230	3.482228e-05	6.401787e-05
TCGA-EE-A2MT-06A-11D-A197-08	1099	1083	16	749	1.455869e-02	0	coding only	34834024	328	740	9.416081e-06	2.124360e-05
TCGA-EE-A2MU-06A-21D-A196-08	848	833	15	562	1.768868e-02	0	coding only	34834024	268	555	7.693627e-06	1.593270e-05
TCGA-EE-A3AA-06A-11D-A196-08	2193	2169	24	1437	1.094391e-02	0	coding only	34834024	722	1424	2.072686e-05	4.087957e-05
TCGA-EE-A3AB-06A-11D-A196-08	828	817	11	581	1.328502e-02	0	coding only	34834024	234	573	6.717570e-06	1.644943e-05
TCGA-EE-A3AC-06A-11D-A196-08	1261	1239	22	827	1.744647e-02	0	coding only	34834024	404	815	1.159786e-05	2.339667e-05
TCGA-EE-A3AD-06A-11D-A196-08	578	568	10	366	1.730104e-02	0	coding only	34834024	198	362	5.684098e-06	1.039214e-05
TCGA-EE-A3AE-06A-11D-A196-08	1800	1759	41	1150	2.277778e-02	0	coding only	34834024	598	1133	1.716712e-05	3.252567e-05
TCGA-EE-A3AF-06A-11D-A196-08	1165	1145	20	811	1.716738e-02	0	coding only	34834024	327	797	9.387374e-06	2.287993e-05
TCGA-EE-A3AG-06A-31D-A196-08	2128	2088	40	1366	1.879699e-02	0	coding only	34834024	717	1347	2.058332e-05	3.866909e-05
TCGA-EE-A3AH-06A-11D-A196-08	476	469	7	328	1.470588e-02	0	coding only	34834024	138	324	3.961644e-06	9.301251e-06
TCGA-EE-A3J3-06A-11D-A20D-08	231	223	8	141	3.463203e-02	1	exome+100bp flanks	34834024	78	137	2.239190e-06	3.932936e-06
TCGA-EE-A3J4-06A-11D-A20D-08	403	389	14	284	3.473945e-02	1	exome+100bp flanks	34834024	104	277	2.985587e-06	7.951995e-06
TCGA-EE-A3J5-06A-11D-A20D-08	2613	2555	58	1756	2.219671e-02	0	coding only	34834024	787	1731	2.259285e-05	4.969279e-05
TCGA-EE-A3J7-06A-11D-A20D-08	1261	1244	17	826	1.348136e-02	0	coding only	34834024	413	809	1.185622e-05	2.322442e-05
TCGA-EE-A3J8-06A-11D-A20D-08	335	327	8	223	2.388060e-02	0	coding only	34834024	103	221	2.956879e-06	6.344372e-06
TCGA-EE-A3JA-06A-11D-A20D-08	1272	1245	27	798	2.122642e-02	0	coding only	34834024	439	782	1.260262e-05	2.244932e-05
TCGA-EE-A3JB-06A-11D-A21A-08	775	759	16	510	2.064516e-02	0	coding only	34834024	244	504	7.004646e-06	1.446861e-05
TCGA-EE-A3JD-06A-11D-A20D-08	3727	3671	56	2399	1.502549e-02	0	coding only	34834024	1255	2386	3.602799e-05	6.849625e-05
TCGA-EE-A3JE-06A-11D-A20D-08	340	335	5	244	1.470588e-02	0	coding only	34834024	88	242	2.526266e-06	6.947231e-06
TCGA-EE-A3JH-06A-11D-A21A-08	238	235	3	149	1.260504e-02	0	coding only	34834024	83	147	2.382728e-06	4.220012e-06
TCGA-EE-A3JI-06A-11D-A21A-08	1450	1421	29	1001	2.000000e-02	0	coding only	34834024	411	984	1.179881e-05	2.824824e-05
TCGA-ER-A193-06A-12D-A197-08	2382	2343	39	1621	1.637280e-02	0	coding only	34834024	707	1602	2.029625e-05	4.598952e-05
TCGA-ER-A195-06A-11D-A196-08	327	323	4	212	1.223242e-02	0	coding only	34834024	109	208	3.129125e-06	5.971173e-06
TCGA-ER-A197-06A-32D-A197-08	63	61	2	50	3.174603e-02	0	coding only	34834024	11	48	3.157832e-07	1.377963e-06
TCGA-ER-A198-06A-11D-A196-08	572	565	7	391	1.223776e-02	0	coding only	34834024	168	387	4.822871e-06	1.110983e-05
TCGA-ER-A199-06A-11D-A197-08	352	344	8	241	2.272727e-02	0	coding only	34834024	100	237	2.870756e-06	6.803693e-06
TCGA-ER-A19A-06A-21D-A197-08	541	533	8	346	1.478743e-02	0	coding only	34834024	182	342	5.224777e-06	9.817987e-06
TCGA-ER-A19B-06A-11D-A196-08	179	179	0	138	0	0	coding only	34834024	40	136	1.148303e-06	3.904229e-06
TCGA-ER-A19C-06A-11D-A196-08	137	131	6	82	4.379562e-02	1	exome+100bp flanks	34834024	49	79	1.406671e-06	2.267898e-06
TCGA-ER-A19D-06A-11D-A197-08	590	574	16	369	2.711864e-02	0	coding only	34834024	203	360	5.827636e-06	1.033472e-05
TCGA-ER-A19E-06A-11D-A197-08	559	550	9	379	1.610018e-02	0	coding only	34834024	168	375	4.822871e-06	1.076534e-05
TCGA-ER-A19F-06A-11D-A196-08	1226	1201	25	816	2.039152e-02	0	coding only	34834024	380	801	1.090887e-05	2.299476e-05
TCGA-ER-A19G-06A-11D-A196-08	663	654	9	424	1.357466e-02	0	coding only	34834024	227	417	6.516617e-06	1.197105e-05
TCGA-ER-A19H-06A-12D-A196-08	342	335	7	224	2.046784e-02	0	coding only	34834024	111	219	3.186540e-06	6.286957e-06
TCGA-ER-A19J-06A-11D-A196-08	283	271	12	185	4.240283e-02	1	exome+100bp flanks	34834024	86	182	2.468851e-06	5.224777e-06
TCGA-ER-A19L-06A-12D-A197-08	81	78	3	52	3.703704e-02	0	coding only	34834024	25	49	7.176891e-07	1.406671e-06
TCGA-ER-A19M-06A-61D-A23B-08	596	590	6	385	1.006711e-02	0	coding only	34834024	203	381	5.827636e-06	1.093758e-05
TCGA-ER-A19N-06A-11D-A197-08	604	590	14	403	2.317881e-02	0	coding only	34834024	183	396	5.253484e-06	1.136820e-05
TCGA-ER-A19O-06A-11D-A197-08	220	214	6	148	2.727273e-02	0	coding only	34834024	66	143	1.894699e-06	4.105182e-06
TCGA-ER-A19P-06A-11D-A196-08	2751	2714	37	2008	1.344965e-02	0	coding only	34834024	699	1974	2.006659e-05	5.666873e-05
TCGA-ER-A19Q-06A-11D-A197-08	153	153	0	104	0	0	coding only	34834024	48	102	1.377963e-06	2.928172e-06
TCGA-ER-A19S-06A-11D-A196-08	277	271	6	190	2.166065e-02	0	coding only	34834024	80	188	2.296605e-06	5.397022e-06
TCGA-ER-A19T-06A-11D-A19A-08	73	72	1	60	1.369863e-02	0	coding only	34834024	12	56	3.444908e-07	1.607624e-06
TCGA-ER-A1A1-06A-11D-A197-08	347	344	3	238	8.645533e-03	0	coding only	34834024	106	233	3.043002e-06	6.688863e-06
TCGA-ER-A2NC-06A-11D-A197-08	485	473	12	316	2.474227e-02	0	coding only	34834024	155	310	4.449673e-06	8.899345e-06
TCGA-ER-A2ND-06A-11D-A196-08	139	133	6	100	4.316547e-02	1	exome+100bp flanks	34834024	33	95	9.473496e-07	2.727219e-06
TCGA-ER-A2NE-06A-21D-A196-08	187	181	6	124	3.208556e-02	1	exome+100bp flanks	34834024	54	120	1.550208e-06	3.444908e-06
TCGA-ER-A2NF-06A-11D-A19A-08	56	53	3	40	5.357143e-02	0	coding only	34834024	12	37	3.444908e-07	1.062180e-06
TCGA-ER-A2NG-06A-11D-A196-08	314	309	5	216	1.592357e-02	0	coding only	34834024	93	210	2.669804e-06	6.028589e-06
TCGA-ER-A2NH-06A-11D-A196-08	396	391	5	255	1.262626e-02	0	coding only	34834024	135	254	3.875521e-06	7.291721e-06
TCGA-ER-A3ES-06A-11D-A20D-08	43	41	2	36	4.651163e-02	0	coding only	34834024	5	35	1.435378e-07	1.004765e-06
TCGA-ER-A3ET-06A-11D-A20D-08	129	127	2	99	1.550388e-02	0	coding only	34834024	27	96	7.751042e-07	2.755926e-06
TCGA-ER-A3EV-06A-11D-A20D-08	119	119	0	97	0	0	coding only	34834024	21	94	6.028589e-07	2.698511e-06
TCGA-FR-A3YO-06A-11D-A23B-08	1077	1056	21	688	1.949861e-02	0	coding only	34834024	363	675	1.042085e-05	1.937761e-05
TCGA-FS-A1YW-06A-11D-A197-08	206	198	8	137	3.883495e-02	1	exome+100bp flanks	34834024	61	137	1.751161e-06	3.932936e-06
TCGA-FS-A1YX-06A-11D-A197-08	31	30	1	25	3.225806e-02	0	coding only	34834024	5	24	1.435378e-07	6.889816e-07
TCGA-FS-A1YY-06A-11D-A197-08	261	255	6	162	2.298851e-02	0	coding only	34834024	92	162	2.641096e-06	4.650625e-06
TCGA-FS-A1Z0-06A-11D-A197-08	354	346	8	246	2.259887e-02	0	coding only	34834024	100	245	2.870756e-06	7.033353e-06
TCGA-FS-A1Z3-06A-11D-A197-08	1290	1265	25	859	1.937984e-02	0	coding only	34834024	402	847	1.154044e-05	2.431531e-05
TCGA-FS-A1Z4-06A-11D-A197-08	61	61	0	48	0	0	coding only	34834024	13	47	3.731983e-07	1.349256e-06
TCGA-FS-A1ZA-06A-11D-A197-08	1476	1447	29	965	1.964770e-02	0	coding only	34834024	474	954	1.360739e-05	2.738702e-05
TCGA-FS-A1ZB-06A-12D-A197-08	318	313	5	212	1.572327e-02	0	coding only	34834024	100	209	2.870756e-06	5.999881e-06
TCGA-FS-A1ZC-06A-11D-A197-08	895	878	17	570	1.899441e-02	0	coding only	34834024	303	558	8.698392e-06	1.601882e-05
TCGA-FS-A1ZD-06A-11D-A197-08	319	314	5	223	1.567398e-02	0	coding only	34834024	89	220	2.554973e-06	6.315664e-06
TCGA-FS-A1ZE-06A-11D-A197-08	193	187	6	133	3.108808e-02	1	exome+100bp flanks	34834024	53	130	1.521501e-06	3.731983e-06
TCGA-FS-A1ZF-06A-12D-A197-08	250	240	10	162	4.000000e-02	1	exome+100bp flanks	34834024	74	160	2.124360e-06	4.593210e-06
TCGA-FS-A1ZG-06A-11D-A197-08	68	66	2	47	2.941176e-02	0	coding only	34834024	19	47	5.454437e-07	1.349256e-06
TCGA-FS-A1ZH-06A-11D-A197-08	50	50	0	37	0	0	coding only	34834024	13	34	3.731983e-07	9.760572e-07
TCGA-FS-A1ZK-06A-11D-A197-08	1950	1923	27	1250	1.384615e-02	0	coding only	34834024	667	1239	1.914795e-05	3.556867e-05
TCGA-FS-A1ZM-06A-12D-A197-08	316	306	10	218	3.164557e-02	1	exome+100bp flanks	34834024	87	212	2.497558e-06	6.086004e-06
TCGA-FS-A1ZP-06A-11D-A197-08	574	569	5	382	8.710801e-03	0	coding only	34834024	186	381	5.339607e-06	1.093758e-05
TCGA-FS-A1ZQ-06A-11D-A197-08	642	631	11	412	1.713396e-02	0	coding only	34834024	216	402	6.200834e-06	1.154044e-05
TCGA-FS-A1ZR-06A-21D-A197-08	189	186	3	130	1.587302e-02	0	coding only	34834024	54	130	1.550208e-06	3.731983e-06
TCGA-FS-A1ZS-06A-12D-A197-08	356	351	5	220	1.404494e-02	0	coding only	34834024	131	215	3.760691e-06	6.172126e-06
TCGA-FS-A1ZT-06A-11D-A197-08	228	218	10	153	4.385965e-02	1	exome+100bp flanks	34834024	65	150	1.865992e-06	4.306135e-06
TCGA-FS-A1ZU-06A-12D-A196-08	61	59	2	41	3.278689e-02	0	coding only	34834024	18	40	5.167362e-07	1.148303e-06
TCGA-FS-A1ZW-06A-12D-A197-08	813	796	17	546	2.091021e-02	0	coding only	34834024	247	539	7.090768e-06	1.547338e-05
TCGA-FS-A1ZY-06A-11D-A197-08	44	43	1	29	2.272727e-02	0	coding only	34834024	14	27	4.019059e-07	7.751042e-07
TCGA-FS-A1ZZ-06A-11D-A197-08	1933	1888	45	1201	2.327988e-02	0	coding only	34834024	672	1181	1.929148e-05	3.390363e-05
TCGA-FW-A3I3-06A-11D-A21A-08	93	91	2	63	2.150538e-02	0	coding only	34834024	27	61	7.751042e-07	1.751161e-06
TCGA-FW-A3R5-06A-11D-A23B-08	24211	23771	440	15175	1.817356e-02	0	coding only	34834024	8487	14961	2.436411e-04	4.294939e-04
TCGA-GF-A3OT-06A-23D-A23B-08	669	656	13	432	1.943199e-02	0	coding only	34834024	223	425	6.401787e-06	1.220072e-05
TCGA-GN-A261-06A-12D-A197-08	9	9	0	8	0	0	coding only	34834024	0	8	0	2.296605e-07
TCGA-GN-A262-06A-11D-A196-08	463	456	7	321	1.511879e-02	0	coding only	34834024	133	317	3.818106e-06	9.100298e-06
TCGA-GN-A264-06A-11D-A196-08	70	69	1	56	1.428571e-02	0	coding only	34834024	11	53	3.157832e-07	1.521501e-06
TCGA-GN-A265-06A-21D-A197-08	362	356	6	265	1.657459e-02	0	coding only	34834024	90	264	2.583681e-06	7.578797e-06
TCGA-GN-A266-06A-11D-A197-08	4783	4714	69	3081	1.442609e-02	0	coding only	34834024	1612	3036	4.627659e-05	8.715617e-05
TCGA-GN-A267-06A-21D-A196-08	503	496	7	329	1.391650e-02	0	coding only	34834024	165	326	4.736748e-06	9.358666e-06
TCGA-GN-A268-06A-11D-A196-08	431	422	9	285	2.088167e-02	0	coding only	34834024	135	276	3.875521e-06	7.923288e-06
TCGA-GN-A26A-06A-11D-A19A-08	411	399	12	281	2.919708e-02	0	coding only	34834024	118	275	3.387493e-06	7.894580e-06
TCGA-GN-A26D-06A-11D-A19A-08	77	76	1	62	1.298701e-02	0	coding only	34834024	14	60	4.019059e-07	1.722454e-06