Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p36.22)	0 (0%)	270	1.1915e-07	6.02e-05	0.0030392	0.845	0.013782	1	0.24924	1	0.20806	1	0.10516	1	0.74119	1	0.070597	1
Amp Peak  2(1q21.3)	0 (0%)	198	4.5492e-20	2.7e-17	4.3167e-11	2.39e-08	4.8009e-08	2.46e-05	0.0022228	0.638	1.8124e-08	9.39e-06	2.284e-09	1.22e-06	6.8512e-07	0.000334	1.4763e-08	7.68e-06
Amp Peak  3(1q42.3)	0 (0%)	201	5.5225e-14	3.18e-11	1.152e-07	5.83e-05	1.103e-05	0.00494	0.017014	1	2.4133e-09	1.28e-06	1.9545e-09	1.04e-06	2.377e-05	0.0103	1.0203e-06	0.000496
Amp Peak  4(3q27.1)	0 (0%)	203	1.2062e-05	0.00537	0.0036338	0.974	0.28945	1	0.12858	1	0.053729	1	0.0042664	1	0.68741	1	0.0050346	1
Amp Peak  5(5p13.1)	0 (0%)	219	1.645e-14	9.54e-12	2.0918e-07	0.000105	5.9517e-05	0.0247	0.031849	1	0.00051422	0.174	2.4627e-06	0.00117	0.0004273	0.147	2.4345e-06	0.00116
Amp Peak  6(6p21.1)	0 (0%)	226	3.0956e-17	1.83e-14	2.191e-10	1.2e-07	0.00068661	0.228	0.11385	1	1.7666e-05	0.0077	5.5651e-07	0.000274	2.4314e-05	0.0105	3.9014e-07	0.000193
Amp Peak  7(6q12)	0 (0%)	246	2.9755e-09	1.57e-06	2.3067e-08	1.19e-05	0.00015986	0.0611	0.002902	0.819	8.1202e-05	0.0331	2.7086e-05	0.0116	0.00033998	0.12	2.1125e-05	0.00917
Amp Peak  8(6q21)	0 (0%)	250	4.3813e-09	2.3e-06	1.68e-05	0.00736	0.004324	1	0.013569	1	0.0079835	1	0.0058986	1	0.001422	0.435	0.00085784	0.275
Amp Peak  9(7p22.3)	0 (0%)	149	8.2502e-14	4.74e-11	1.739e-05	0.0076	0.011562	1	0.62546	1	0.019979	1	0.00033246	0.118	0.077273	1	0.00024503	0.0902
Amp Peak 10(7p11.2)	0 (0%)	163	4.2298e-12	2.37e-09	0.0099491	1	0.063523	1	0.81642	1	0.11998	1	0.010224	1	0.086589	1	0.0039373	1
Amp Peak 11(7q21.2)	0 (0%)	169	2.3593e-11	1.31e-08	0.019553	1	0.27644	1	0.82814	1	0.30082	1	0.042023	1	0.38688	1	0.1286	1
Amp Peak 12(8p23.1)	0 (0%)	185	3.3948e-13	1.94e-10	0.0029823	0.832	0.45355	1	0.0082619	1	0.046643	1	0.32573	1	0.24805	1	0.050258	1
Amp Peak 13(8q24.21)	0 (0%)	101	2.6319e-06	0.00125	4.4627e-05	0.0187	0.05759	1	0.031773	1	0.002896	0.819	0.00038772	0.135	0.0057629	1	6.7943e-05	0.028
Amp Peak 14(9p24.1)	0 (0%)	257	0.36393	1	0.08784	1	0.63334	1	0.30612	1	0.27658	1	0.30315	1	0.29669	1	0.04479	1
Amp Peak 15(9q34.3)	0 (0%)	232	2.8621e-07	0.000143	0.0051731	1	0.022009	1	0.54972	1	0.050514	1	0.19085	1	0.068552	1	0.030136	1
Amp Peak 16(10q22.2)	0 (0%)	250	9.4116e-08	4.78e-05	0.074625	1	0.0055022	1	0.0094961	1	0.072997	1	0.056734	1	0.0068258	1	0.03792	1
Amp Peak 17(10q26.13)	0 (0%)	245	1.1825e-05	0.00527	0.0012812	0.395	0.0086906	1	0.017741	1	0.12349	1	0.0049281	1	0.23127	1	0.0087423	1
Amp Peak 18(11p13)	0 (0%)	252	0.0065816	1	0.1863	1	0.016608	1	0.0052935	1	0.00026617	0.0972	0.00038663	0.135	0.14717	1	0.0086216	1
Amp Peak 19(11q13.3)	0 (0%)	238	3.2708e-05	0.0139	0.19377	1	0.48273	1	0.29728	1	0.0018206	0.535	0.013216	1	0.0027082	0.769	0.16329	1
Amp Peak 20(12p12.1)	0 (0%)	220	0.00030362	0.109	0.011401	1	0.3876	1	0.79822	1	0.13002	1	0.060622	1	0.0052193	1	0.1152	1
Amp Peak 21(12q15)	0 (0%)	229	0.0080306	1	0.00048876	0.167	0.47928	1	0.41193	1	0.030134	1	0.019075	1	0.07569	1	0.22078	1
Amp Peak 22(13q12.3)	0 (0%)	190	7.0689e-10	3.82e-07	4.545e-06	0.00212	0.043159	1	0.79605	1	0.00037042	0.129	0.0001188	0.047	0.0035835	0.964	0.00016115	0.0614
Amp Peak 23(13q22.1)	0 (0%)	185	1.5441e-08	8.01e-06	4.1325e-05	0.0174	0.0016812	0.5	0.040302	1	2.9805e-07	0.000148	6.0113e-07	0.000295	0.0019278	0.559	1.4788e-06	0.000716
Amp Peak 24(15q26.1)	0 (0%)	237	1.0316e-13	5.91e-11	0.00044114	0.151	7.5946e-05	0.0311	0.00088255	0.281	0.045226	1	0.008776	1	0.029306	1	0.020857	1
Amp Peak 25(17q12)	0 (0%)	214	9.5399e-13	5.39e-10	2.6762e-06	0.00127	5.7556e-05	0.024	0.00071741	0.235	6.0868e-06	0.00279	5.9154e-06	0.00272	0.086189	1	0.0061564	1
Amp Peak 26(18q11.2)	0 (0%)	216	3.3105e-06	0.00156	0.00030593	0.11	0.021393	1	0.0942	1	0.0062983	1	0.017095	1	0.19627	1	0.07314	1
Amp Peak 27(19q12)	0 (0%)	216	1.6674e-15	9.79e-13	1.0052e-10	5.54e-08	1.1953e-09	6.43e-07	2.9769e-06	0.00141	8.1336e-12	4.53e-09	1.6521e-13	9.45e-11	0.00058285	0.195	7.1636e-13	4.07e-10
Amp Peak 28(20q13.2)	0 (0%)	105	5.6288e-21	3.34e-18	4.2366e-12	2.37e-09	5.1812e-07	0.000255	9.0402e-06	0.0041	5.5259e-10	3e-07	2.1521e-12	1.21e-09	0.0036425	0.974	6.9078e-09	3.62e-06
Amp Peak 29(Xq27.3)	0 (0%)	246	0.00015507	0.0594	0.19077	1	0.066741	1	0.73576	1	0.11105	1	0.61518	1	0.0046258	1	0.0085816	1
Del Peak  1(1p36.11)	0 (0%)	223	4.2015e-15	2.45e-12	0.0003959	0.137	0.00088296	0.281	0.0088707	1	0.00012859	0.0499	0.00011945	0.0472	0.012807	1	0.0019149	0.557
Del Peak  2(1p13.2)	0 (0%)	247	5.3952e-12	3.01e-09	0.0066913	1	0.0034417	0.929	0.013125	1	0.00028019	0.102	0.0013406	0.412	0.24083	1	0.015134	1
Del Peak  3(1q44)	0 (0%)	283	0.018536	1	0.0074751	1	0.57281	1	0.65077	1	0.12983	1	0.079051	1	0.12292	1	0.082569	1
Del Peak  4(2q32.1)	0 (0%)	264	0.0089459	1	0.10796	1	0.46005	1	0.89987	1	0.033332	1	0.13314	1	0.57061	1	0.74247	1
Del Peak  5(2q37.2)	0 (0%)	259	0.0001908	0.0717	0.0073601	1	0.064203	1	0.44964	1	0.001678	0.5	8.7564e-05	0.0355	0.07059	1	0.0040206	1
Del Peak  6(3p26.1)	0 (0%)	222	2.6431e-10	1.44e-07	0.0003067	0.11	0.0019934	0.576	0.1604	1	0.00014336	0.0552	6.3217e-05	0.0261	0.19036	1	0.00071926	0.235
Del Peak  7(3p14.2)	0 (0%)	204	9.3271e-13	5.28e-10	1.2366e-06	6e-04	0.00050183	0.171	0.0017691	0.524	7.4534e-06	0.0034	1.7526e-06	0.000841	0.032786	1	4.1728e-06	0.00196
Del Peak  8(3q26.31)	0 (0%)	272	4.23e-06	0.00198	0.00010717	0.0427	0.00026711	0.0972	0.0093143	1	0.00052135	0.176	0.021139	1	0.03276	1	0.0068655	1
Del Peak  9(4p16.3)	0 (0%)	194	2.8949e-10	1.57e-07	0.00099107	0.311	9.8703e-05	0.0394	0.00062418	0.208	1.5872e-05	0.00697	0.00021172	0.079	2.5663e-05	0.011	1.2511e-05	0.00555
Del Peak 10(4q22.1)	0 (0%)	171	6.7225e-19	3.98e-16	3.8453e-07	0.000191	0.041935	1	0.034178	1	9.2007e-06	0.00415	0.00036895	0.129	0.0057841	1	0.00096207	0.304
Del Peak 11(4q34.3)	0 (0%)	179	1.0706e-14	6.22e-12	1.8722e-06	0.000897	0.00010919	0.0433	0.0091478	1	1.6944e-06	0.000815	1.8388e-05	0.008	0.0012599	0.391	4.7053e-06	0.00219
Del Peak 12(5q11.2)	0 (0%)	203	6.544e-28	3.93e-25	2.4868e-14	1.44e-11	8.0171e-10	4.33e-07	6.0186e-08	3.08e-05	8.4455e-12	4.7e-09	4.0237e-10	2.18e-07	3.7047e-08	1.9e-05	3.5286e-15	2.06e-12
Del Peak 13(5q23.2)	0 (0%)	213	2.4759e-23	1.48e-20	2.2928e-12	1.29e-09	1.0319e-09	5.56e-07	1.8734e-07	9.44e-05	1.017e-12	5.74e-10	1.9281e-09	1.03e-06	4.8446e-09	2.54e-06	4.7467e-14	2.73e-11
Del Peak 14(6p25.3)	0 (0%)	237	5.0068e-07	0.000247	0.00057609	0.194	0.0046583	1	0.026837	1	9.7208e-05	0.0389	0.00033695	0.119	0.056099	1	0.026274	1
Del Peak 15(6q26)	0 (0%)	244	0.00012761	0.0496	0.071103	1	0.00012381	0.0487	7.495e-05	0.0308	0.14871	1	0.035561	1	0.32949	1	0.33864	1
Del Peak 16(7q31.1)	0 (0%)	262	3.1075e-07	0.000154	0.0011647	0.362	0.14443	1	0.33723	1	0.02201	1	0.2474	1	0.00086279	0.276	0.059102	1
Del Peak 17(7q36.3)	0 (0%)	248	1.8187e-14	1.05e-11	1.3075e-05	0.00579	0.00067715	0.225	0.0046314	1	0.00078106	0.253	3.0573e-05	0.013	0.010853	1	9.56e-05	0.0383
Del Peak 18(8p23.2)	0 (0%)	229	4.3014e-14	2.48e-11	8.1061e-06	0.00368	0.0031363	0.869	0.0002321	0.0859	5.921e-05	0.0246	1.5805e-05	0.00695	0.040747	1	9.2321e-06	0.00415
Del Peak 19(9p23)	0 (0%)	186	2.6605e-15	1.56e-12	8.7608e-05	0.0355	0.00012689	0.0495	0.001267	0.392	0.0014528	0.443	5.5478e-05	0.0232	0.075755	1	0.0022152	0.638
Del Peak 20(9p21.3)	0 (0%)	188	6.2942e-16	3.7e-13	1.9238e-10	1.05e-07	2.5816e-07	0.000129	0.0001949	0.0731	0.00018835	0.071	6.2271e-06	0.00285	0.0070417	1	8.9911e-05	0.0362
Del Peak 21(9q21.11)	0 (0%)	233	2.9745e-08	1.53e-05	0.00022338	0.0829	0.011224	1	0.018466	1	0.025822	1	0.00036267	0.127	0.0010053	0.314	2.2544e-05	0.00976
Del Peak 22(10p15.1)	0 (0%)	268	0.00012398	0.0487	0.27709	1	0.29077	1	0.62744	1	0.23814	1	0.34574	1	0.079397	1	0.15594	1
Del Peak 23(10q22.3)	0 (0%)	257	2.4321e-09	1.29e-06	0.0007179	0.235	0.026603	1	0.078866	1	0.0032908	0.901	0.00016834	0.0638	0.020347	1	0.00028473	0.103
Del Peak 24(10q23.31)	0 (0%)	233	2.7184e-12	1.53e-09	5.2253e-06	0.00242	0.013634	1	0.017926	1	3.0702e-05	0.013	1.1649e-05	0.00521	0.00031546	0.112	0.00031004	0.111
Del Peak 25(11p15.4)	0 (0%)	247	2.9626e-08	1.53e-05	8.053e-06	0.00366	0.10151	1	0.037404	1	0.0016707	0.5	0.0015584	0.474	0.22194	1	0.0032879	0.901
Del Peak 26(11q23.2)	0 (0%)	244	0.0002643	0.0967	0.001666	0.5	0.00078019	0.253	0.10265	1	0.28695	1	0.43085	1	0.9349	1	0.20175	1
Del Peak 27(12p13.31)	0 (0%)	256	1.4888e-10	8.16e-08	5.6975e-06	0.00263	4.6428e-06	0.00216	0.00029689	0.107	0.00038876	0.135	0.0022193	0.638	0.019228	1	0.0001539	0.0591
Del Peak 28(13q12.11)	0 (0%)	262	2.323e-06	0.00111	0.12644	1	0.17578	1	0.012354	1	0.54075	1	0.23983	1	0.061936	1	0.11323	1
Del Peak 29(14q21.1)	0 (0%)	235	7.6857e-07	0.000374	0.015925	1	0.0008371	0.27	0.00017534	0.0663	0.00014164	0.0547	0.00016216	0.0616	0.036311	1	0.00023581	0.087
Del Peak 30(14q32.33)	0 (0%)	217	9.2439e-09	4.83e-06	0.042169	1	0.01113	1	8.2413e-05	0.0335	0.034742	1	0.018323	1	0.02744	1	0.0062314	1
Del Peak 31(15q15.1)	0 (0%)	227	6.4387e-13	3.66e-10	2.1075e-07	0.000106	6.0843e-05	0.0252	6.2604e-07	0.000307	1.9828e-09	1.06e-06	2.8166e-08	1.45e-05	0.00055166	0.186	1.0637e-05	0.00478
Del Peak 32(16p13.3)	0 (0%)	248	7.4186e-11	4.1e-08	4.1382e-05	0.0174	1.4599e-05	0.00644	0.00022228	0.0827	1.3938e-05	0.00616	0.0006855	0.228	2.9145e-06	0.00138	1.5289e-06	0.000738
Del Peak 33(16q23.1)	0 (0%)	188	2.2174e-07	0.000111	0.0028933	0.819	0.037893	1	0.058842	1	0.01205	1	0.012873	1	0.01078	1	0.00088065	0.281
Del Peak 34(17p12)	0 (0%)	191	1.8098e-23	1.08e-20	3.2797e-11	1.82e-08	3.9355e-06	0.00185	1.6771e-06	0.000808	6.2053e-08	3.16e-05	1.1496e-07	5.83e-05	9.0532e-06	0.0041	4.0759e-09	2.15e-06
Del Peak 35(17q24.3)	0 (0%)	251	1.3158e-10	7.24e-08	0.00025131	0.0922	0.001839	0.539	0.020431	1	0.0049043	1	0.0064756	1	0.020516	1	0.021227	1
Del Peak 36(18q21.2)	0 (0%)	173	4.4882e-13	2.56e-10	0.0025647	0.731	0.018528	1	0.029398	1	0.0071591	1	0.0041511	1	0.071747	1	0.015916	1
Del Peak 37(19p13.3)	0 (0%)	207	2.3542e-27	1.41e-24	2.3307e-16	1.37e-13	9.1137e-13	5.17e-10	2.023e-15	1.19e-12	2.3894e-22	1.42e-19	9.6904e-24	5.79e-21	3.9687e-05	0.0168	6.1297e-17	3.62e-14
Del Peak 38(19q13.11)	0 (0%)	263	2.6898e-09	1.42e-06	8.4859e-05	0.0345	0.0017907	0.528	0.0029404	0.823	2.4413e-05	0.0105	6.4167e-07	0.000314	0.01404	1	4.8894e-06	0.00227
Del Peak 39(20p12.1)	0 (0%)	254	1.2075e-08	6.3e-06	0.00070056	0.23	0.0033025	0.901	0.040699	1	0.001656	0.5	0.0043534	1	0.050376	1	0.0053136	1
Del Peak 40(20p12.1)	0 (0%)	254	1.2075e-08	6.3e-06	0.00070056	0.23	0.0033025	0.901	0.040699	1	0.001656	0.5	0.0043534	1	0.050376	1	0.0053136	1
Del Peak 41(21q11.2)	0 (0%)	198	1.3864e-10	7.61e-08	2.7064e-05	0.0116	0.00049608	0.169	8.9804e-05	0.0362	0.0018853	0.551	0.00012529	0.049	0.0031953	0.879	0.010788	1
Del Peak 42(21q22.13)	0 (0%)	191	1.5619e-09	8.37e-07	0.00036168	0.127	0.0058892	1	0.00019731	0.0738	0.00069252	0.229	8.025e-05	0.0328	0.10654	1	0.006323	1
Del Peak 43(22q13.31)	0 (0%)	205	9.6794e-15	5.63e-12	0.00013549	0.0524	0.00099263	0.311	0.0031687	0.875	4.364e-05	0.0183	6.4688e-06	0.00296	0.078726	1	0.0001225	0.0483
Del Peak 44(Xp22.2)	0 (0%)	245	1.4414e-09	7.74e-07	0.0016225	0.492	0.05171	1	0.14633	1	0.022794	1	0.00098358	0.31	0.2316	1	0.014215	1
Del Peak 45(Xp21.1)	0 (0%)	254	6.2238e-08	3.17e-05	0.0040678	1	0.17179	1	0.13874	1	0.22161	1	0.36584	1	0.71969	1	0.25932	1
Del Peak 46(Xq21.33)	0 (0%)	264	5.7705e-06	0.00266	0.035216	1	0.074569	1	0.013956	1	0.070249	1	0.21165	1	0.079047	1	0.061823	1