Molecular subtypes CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1q gain 0 (0%) 476 3.2915e-06 0.00122 0.074376 1 0.015262 1 0.082642 1 0.011987 1 0.0010209 0.283 0.2243 1 0.20446 1 0.17669 1 0.21595 1 4p gain 0 (0%) 493 1.8464e-05 0.00655 0.018568 1 NA NA NA NA 0.037836 1 0.02155 1 0.11167 1 0.097517 1 0.07186 1 0.10082 1 4q gain 0 (0%) 493 1.8464e-05 0.00655 0.018568 1 NA NA NA NA 0.037836 1 0.02155 1 0.11167 1 0.097517 1 0.07186 1 0.10082 1 5p gain 0 (0%) 480 6.9657e-20 2.81e-17 0.000873 0.244 1 1 0.12522 1 0.0023544 0.607 0.00053814 0.156 0.0069104 1 0.0005414 0.156 0.0048744 1 0.00075033 0.211 5q gain 0 (0%) 483 2.602e-18 1.05e-15 4.0181e-05 0.0136 0.90108 1 0.02989 1 0.00016395 0.0518 4.7055e-05 0.0158 0.001456 0.392 0.00010604 0.0341 0.00099072 0.275 0.00011856 0.0379 7p gain 0 (0%) 480 1.5893e-22 6.42e-20 0.00016855 0.0531 1 1 0.01288 1 0.00041041 0.121 6.0524e-05 0.0199 0.0023192 0.601 0.00027181 0.0829 0.0013504 0.367 0.00041783 0.122 7q gain 0 (0%) 478 1.7604e-23 7.13e-21 3.6539e-05 0.0124 0.68867 1 0.002983 0.752 5.0592e-05 0.0168 6.1839e-06 0.00224 0.00028923 0.0879 2.8747e-05 0.00992 0.00019992 0.0622 3.5912e-05 0.0122 11p gain 0 (0%) 492 0.0013394 0.366 0.0042109 1 NA NA NA NA 0.012677 1 0.005523 1 0.0022796 0.597 0.0013163 0.361 0.002103 0.555 0.0015024 0.403 11q gain 0 (0%) 493 0.0002043 0.0633 0.018568 1 NA NA NA NA 0.037836 1 0.02155 1 0.007784 1 0.005026 1 0.0072995 1 0.005584 1 12p gain 0 (0%) 486 1.0266e-12 4.09e-10 2.8691e-06 0.00107 0.90108 1 0.02989 1 1.6038e-05 0.00577 2.1165e-06 0.000794 5.1942e-05 0.0172 1.6978e-05 0.00606 3.4295e-05 0.0118 2.0016e-05 0.00701 12q gain 0 (0%) 485 1.27e-12 5.04e-10 6.4843e-07 0.000248 0.90108 1 0.02989 1 4.4561e-06 0.00165 6.4863e-07 0.000248 1.638e-05 0.00588 4.848e-06 0.00179 6.1086e-06 0.00222 5.7595e-06 0.00211 13q gain 0 (0%) 494 0.00029424 0.0892 0.048893 1 NA NA NA NA 0.10293 1 0.06564 1 NA NA NA NA NA NA NA NA 14q gain 0 (0%) 489 5.0177e-09 1.95e-06 8.7584e-05 0.0285 1 1 0.25562 1 0.00032501 0.0975 0.00014844 0.0472 0.0046709 1 0.0022936 0.599 0.002907 0.735 0.0025574 0.65 16p gain 0 (0%) 485 5.5123e-14 2.21e-11 3.2107e-05 0.011 1 1 0.044488 1 0.00013226 0.0422 2.6942e-05 0.00935 0.00021395 0.0657 5.8815e-05 0.0194 8.2791e-05 0.0271 8.3543e-05 0.0272 16q gain 0 (0%) 487 5.6685e-13 2.26e-10 0.00022415 0.0686 0.85601 1 0.12945 1 0.0013145 0.361 0.00038956 0.115 0.0016904 0.448 0.00054668 0.157 0.00071275 0.201 0.00075817 0.212 17p gain 0 (0%) 485 1.9977e-09 7.81e-07 6.4843e-07 0.000248 0.7724 1 0.017869 1 4.4561e-06 0.00165 6.4863e-07 0.000248 5.1942e-05 0.0172 1.6978e-05 0.00606 3.4295e-05 0.0118 2.0016e-05 0.00701 17q gain 0 (0%) 484 3.8322e-09 1.49e-06 3.7333e-07 0.000143 0.79537 1 0.020579 1 1.5135e-06 0.000569 1.6021e-07 6.15e-05 1.638e-05 0.00588 4.848e-06 0.00179 6.1086e-06 0.00222 5.7595e-06 0.00211 18p gain 0 (0%) 494 0.0024459 0.629 0.048893 1 NA NA NA NA 0.10293 1 0.06564 1 NA NA NA NA NA NA NA NA 18q gain 0 (0%) 494 0.0024459 0.629 0.048893 1 NA NA NA NA 0.10293 1 0.06564 1 NA NA NA NA NA NA NA NA 19p gain 0 (0%) 493 1.8464e-05 0.00655 0.018568 1 NA NA NA NA 0.037836 1 0.02155 1 0.026428 1 0.019063 1 0.025189 1 0.020622 1 19q gain 0 (0%) 492 1.1236e-06 0.000425 0.0042109 1 0.63557 1 0.055144 1 0.012677 1 0.005523 1 0.007784 1 0.005026 1 0.0072995 1 0.005584 1 20p gain 0 (0%) 488 1.1065e-11 4.37e-09 0.00070568 0.2 1 1 0.081715 1 0.0037415 0.939 0.0014423 0.391 0.012444 1 0.0061924 1 0.0057349 1 0.0064492 1 20q gain 0 (0%) 488 1.1065e-11 4.37e-09 0.00070568 0.2 1 1 0.081715 1 0.0037415 0.939 0.0014423 0.391 0.012444 1 0.0061924 1 0.0057349 1 0.0064492 1 21q gain 0 (0%) 494 0.0024459 0.629 0.048893 1 NA NA NA NA 0.10293 1 0.06564 1 0.026428 1 0.019063 1 0.025189 1 0.020622 1 1p loss 0 (0%) 494 0.00029424 0.0892 0.55354 1 NA NA NA NA 0.50251 1 0.18428 1 0.2996 1 0.27592 1 0.19962 1 0.28169 1 2p loss 0 (0%) 489 5.0177e-09 1.95e-06 8.7584e-05 0.0285 1 1 0.081715 1 0.00032501 0.0975 0.00014844 0.0472 5.5292e-05 0.0182 2.2703e-05 0.0079 4.8519e-05 0.0162 2.8131e-05 0.00973 2q loss 0 (0%) 490 3.7767e-09 1.47e-06 0.0003639 0.108 0.83694 1 0.05495 1 0.0015335 0.409 0.00053356 0.155 0.00019214 0.06 8.8476e-05 0.0286 0.00017146 0.0538 0.00010664 0.0342 3q loss 0 (0%) 494 0.00029424 0.0892 0.048893 1 NA NA NA NA 0.10293 1 0.06564 1 0.026428 1 0.019063 1 0.025189 1 0.020622 1 6q loss 0 (0%) 494 0.021827 1 0.048893 1 NA NA NA NA 0.10293 1 0.06564 1 0.026428 1 0.019063 1 0.025189 1 0.020622 1 8p loss 0 (0%) 493 1.8464e-05 0.00655 0.045744 1 NA NA NA NA 0.037836 1 0.02155 1 0.007784 1 0.005026 1 0.0072995 1 0.005584 1 8q loss 0 (0%) 493 1.8464e-05 0.00655 0.045744 1 NA NA NA NA 0.037836 1 0.02155 1 0.007784 1 0.005026 1 0.0072995 1 0.005584 1 9p loss 0 (0%) 485 1.0764e-11 4.26e-09 0.26674 1 0.55913 1 0.2062 1 0.091104 1 0.094379 1 0.18481 1 0.15941 1 0.14983 1 0.17644 1 9q loss 0 (0%) 480 1.5806e-13 6.32e-11 0.17701 1 0.21009 1 0.0044095 1 0.18984 1 0.13911 1 0.2355 1 0.22795 1 0.16829 1 0.24127 1 10p loss 0 (0%) 491 6.6228e-08 2.56e-05 0.094375 1 NA NA NA NA 0.047873 1 0.014167 1 0.039885 1 0.033299 1 0.025144 1 0.034786 1 10q loss 0 (0%) 492 1.1236e-06 0.000425 0.17117 1 NA NA NA NA 0.1044 1 0.041478 1 0.11167 1 0.097517 1 0.07186 1 0.10082 1 11p loss 0 (0%) 490 7.7423e-08 2.98e-05 0.011626 1 0.49868 1 1 1 0.0060271 1 0.014263 1 0.039885 1 0.033299 1 0.025144 1 0.034786 1 11q loss 0 (0%) 488 3.2424e-06 0.00121 0.014215 1 0.38774 1 0.79799 1 0.014323 1 0.01475 1 0.013813 1 0.0074995 1 0.0086168 1 0.011743 1 13q loss 0 (0%) 486 0.012252 1 0.022688 1 0.077855 1 1 1 0.020758 1 0.012932 1 0.0077405 1 0.016433 1 0.0086007 1 0.0023048 0.599 15q loss 0 (0%) 490 0.00046394 0.135 0.00226 0.594 0.45787 1 0.25562 1 0.0015335 0.409 0.00053356 0.155 0.00066375 0.189 0.00034244 0.102 0.00060228 0.172 0.00040159 0.118 17p loss 0 (0%) 490 0.0011815 0.326 1 1 1 1 1 1 0.79034 1 0.75525 1 0.51802 1 0.49856 1 0.79911 1 0.49959 1 18p loss 0 (0%) 493 0.0002043 0.0633 0.18642 1 1 1 0.36851 1 0.22381 1 0.081366 1 0.074254 1 0.067089 1 0.10943 1 0.068103 1 18q loss 0 (0%) 493 0.0002043 0.0633 0.18642 1 1 1 0.36851 1 0.22381 1 0.081366 1 0.074254 1 0.067089 1 0.10943 1 0.068103 1 19p loss 0 (0%) 493 0.13197 1 0.018568 1 0.28073 1 0.36851 1 0.037836 1 0.02155 1 0.007784 1 0.005026 1 0.0072995 1 0.005584 1 21q loss 0 (0%) 491 0.00019167 0.06 0.094375 1 0.38423 1 0.055144 1 0.20933 1 0.22229 1 0.039885 1 0.033299 1 0.025144 1 0.034786 1 22q loss 0 (0%) 431 6.79e-58 2.76e-55 4.4549e-05 0.015 0.11409 1 0.083458 1 2.2619e-11 8.89e-09 2.5877e-11 1.01e-08 4.327e-05 0.0146 9.5128e-06 0.00343 3.9323e-05 0.0133 4.8495e-06 0.00179