		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak 1(Xq22.3)	0 (0%)	481	1.6321e-06	0.000411	0.48729	1	0.85601	1	0.12945	1	0.57597	1	0.51866	1	0.084852	1	0.039767	1	0.070295	1	0.041677	1
Del Peak  2(2p23.1)	0 (0%)	485	3.571e-10	9.64e-08	3.2107e-05	0.00774	0.7724	1	0.017869	1	3.2832e-05	0.00785	6.8011e-06	0.0017	1.271e-06	0.000323	3.6767e-07	9.56e-05	1.0595e-06	0.000271	4.9576e-07	0.000128
Del Peak  3(2q35)	0 (0%)	486	5.956e-12	1.61e-09	2.8208e-05	0.00688	0.56155	1	0.0028747	0.566	1.6038e-05	0.00398	2.1165e-06	0.000531	1.271e-06	0.000323	3.6767e-07	9.56e-05	1.0595e-06	0.000271	4.9576e-07	0.000128
Del Peak  4(5p15.2)	0 (0%)	493	0.3481	1	0.36734	1	NA	NA	NA	NA	0.37695	1	0.39663	1	NA	NA	NA	NA	NA	NA	NA	NA
Del Peak  6(6q22.31)	0 (0%)	491	0.00036048	0.0825	0.0092858	1	0.037905	1	0.79799	1	0.012677	1	0.005523	1	0.013813	1	0.0074995	1	0.0086168	1	0.011743	1
Del Peak  8(7q34)	0 (0%)	493	0.64117	1	0.79525	1	NA	NA	NA	NA	0.75104	1	0.64546	1	0.68886	1	0.82896	1	1	1	0.6858	1
Del Peak  9(8p23.2)	0 (0%)	493	1.8464e-05	0.00456	0.045744	1	NA	NA	NA	NA	0.037836	1	0.02155	1	0.007784	1	0.005026	0.935	0.0072995	1	0.005584	1
Del Peak 10(8p22)	0 (0%)	493	1.8464e-05	0.00456	0.045744	1	NA	NA	NA	NA	0.037836	1	0.02155	1	0.007784	1	0.005026	0.935	0.0072995	1	0.005584	1
Del Peak 11(8p12)	0 (0%)	493	1.8464e-05	0.00456	0.045744	1	NA	NA	NA	NA	0.037836	1	0.02155	1	0.007784	1	0.005026	0.935	0.0072995	1	0.005584	1
Del Peak 12(8q24.22)	0 (0%)	490	4.6104e-05	0.0109	0.00226	0.459	0.83694	1	0.05495	1	0.0015335	0.327	0.00053356	0.121	0.00019214	0.0446	8.8476e-05	0.0208	0.00017146	0.04	0.00010664	0.025
Del Peak 13(9q21.13)	0 (0%)	474	1.1701e-13	3.18e-11	0.11235	1	0.18242	1	0.013559	1	0.10534	1	0.046022	1	0.03936	1	0.029281	1	0.021685	1	0.16621	1
Del Peak 14(10q21.2)	0 (0%)	486	0.00055763	0.125	0.0568	1	0.16234	1	1	1	0.025044	1	0.0064958	1	0.43568	1	0.56293	1	0.31317	1	0.61002	1
Del Peak 15(10q23.31)	0 (0%)	486	3.3663e-05	0.00801	0.022688	1	0.033562	1	0.064148	1	0.0090652	1	0.0013565	0.294	0.04199	1	0.014361	1	0.022514	1	0.016891	1
Del Peak 16(11p15.1)	0 (0%)	490	7.7423e-08	2.05e-05	0.011626	1	0.49868	1	1	1	0.0060271	1	0.014263	1	0.039885	1	0.033299	1	0.025144	1	0.034786	1
Del Peak 17(13q12.3)	0 (0%)	482	0.022703	1	0.0010842	0.24	0.38844	1	0.43998	1	0.0016424	0.345	0.020799	1	0.057385	1	0.02354	1	0.044377	1	0.03037	1
Del Peak 18(13q21.31)	0 (0%)	480	0.027241	1	0.028361	1	0.090753	1	1	1	0.0021003	0.431	0.00040643	0.0923	0.0065195	1	0.0016878	0.353	0.0088333	1	0.0018979	0.393
Del Peak 19(15q25.3)	0 (0%)	489	0.0013276	0.291	0.01228	1	0.44371	1	0.081715	1	0.012015	1	0.0042038	0.795	0.0030147	0.591	0.0022936	0.463	0.0044905	0.844	0.0025574	0.506
Del Peak 21(16q23.3)	0 (0%)	491	0.048385	1	0.12238	1	0.44371	1	0.10254	1	0.14091	1	0.25082	1	0.22313	1	0.29157	1	0.1678	1	0.29108	1
Del Peak 22(17p13.1)	0 (0%)	489	0.0018066	0.376	0.88347	1	1	1	1	1	0.59807	1	0.55135	1	0.36425	1	0.31344	1	0.49431	1	0.31378	1
Del Peak 23(18p11.21)	0 (0%)	493	0.0002043	0.0472	0.18642	1	1	1	0.36851	1	0.22381	1	0.081366	1	0.074254	1	0.067089	1	0.10943	1	0.068103	1
Del Peak 24(18q22.2)	0 (0%)	492	0.0013394	0.292	0.059988	1	1	1	0.25562	1	0.1044	1	0.041478	1	0.026078	1	0.01383	1	0.038787	1	0.023685	1
Del Peak 25(19p13.2)	0 (0%)	491	0.004529	0.847	0.0015707	0.333	0.68193	1	0.25562	1	0.0051413	0.941	0.0021378	0.436	0.00066375	0.148	0.00034244	0.0788	0.00060228	0.135	0.00040159	0.0916
Del Peak 28(21q21.1)	0 (0%)	488	5.7205e-05	0.0135	0.31307	1	0.14723	1	0.2062	1	0.4826	1	0.76338	1	0.075696	1	0.073182	1	0.049962	1	0.07572	1
Del Peak 29(22q13.1)	0 (0%)	411	1.4167e-91	3.91e-89	3.1839e-05	0.00774	0.20537	1	0.079474	1	3.8404e-09	1.03e-06	2.0416e-07	5.37e-05	0.0034263	0.658	0.002301	0.463	0.0031605	0.616	0.0014705	0.318
Del Peak 30(22q13.2)	0 (0%)	411	1.4167e-91	3.91e-89	3.1839e-05	0.00774	0.20537	1	0.079474	1	3.8404e-09	1.03e-06	2.0416e-07	5.37e-05	0.0034263	0.658	0.002301	0.463	0.0031605	0.616	0.0014705	0.318
Del Peak 31(22q13.31)	0 (0%)	411	1.4167e-91	3.91e-89	3.1839e-05	0.00774	0.20537	1	0.079474	1	3.8404e-09	1.03e-06	2.0416e-07	5.37e-05	0.0034263	0.658	0.002301	0.463	0.0031605	0.616	0.0014705	0.318
Del Peak 32(22q13.32)	0 (0%)	410	1.1632e-89	3.18e-87	1.5807e-05	0.00394	0.20537	1	0.079474	1	1.9028e-09	5.12e-07	9.4173e-08	2.49e-05	0.0020384	0.42	0.0012301	0.271	0.0015853	0.334	0.00088829	0.197
Del Peak 33(Xq22.1)	0 (0%)	491	0.073283	1	0.42547	1	0.099343	1	0.11999	1	0.63321	1	0.63201	1	0.45272	1	0.39006	1	0.52212	1	0.38917	1
Del Peak 34(Xq22.3)	0 (0%)	493	0.05392	1	0.045744	1	0.28073	1	0.36851	1	0.086666	1	0.27394	1	0.074254	1	0.067089	1	0.10943	1	0.068103	1
