This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and subtypes.
Testing the association between copy number variation 79 arm-level results and 12 molecular subtypes across 492 patients, 256 significant findings detected with Q value < 0.25.
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1q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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2p gain cnv correlated to 'CN_CNMF'.
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2q gain cnv correlated to 'CN_CNMF'.
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3p gain cnv correlated to 'CN_CNMF'.
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3q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p gain cnv correlated to 'CN_CNMF'.
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6q gain cnv correlated to 'CN_CNMF'.
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7p gain cnv correlated to 'CN_CNMF'.
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7q gain cnv correlated to 'CN_CNMF'.
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8p gain cnv correlated to 'CN_CNMF'.
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8q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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10q gain cnv correlated to 'CN_CNMF'.
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12p gain cnv correlated to 'CN_CNMF'.
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12q gain cnv correlated to 'CN_CNMF'.
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13q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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14q gain cnv correlated to 'CN_CNMF'.
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17p gain cnv correlated to 'CN_CNMF'.
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18p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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19p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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19q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Xq gain cnv correlated to 'CN_CNMF'.
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1p loss cnv correlated to 'CN_CNMF'.
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3p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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3q loss cnv correlated to 'CN_CNMF'.
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4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF'.
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7p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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7q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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9q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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10q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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11p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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12p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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14q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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19q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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20p loss cnv correlated to 'CN_CNMF'.
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21q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Xq loss cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
Molecular subtypes |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Chi-square test | Fisher's exact test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
15q loss | 0 (0%) | 411 |
0.00202 (1.00) |
0.000218 (0.134) |
4.68e-35 (3.99e-32) |
2.97e-13 (2.41e-10) |
0.00259 (1.00) |
0.267 (1.00) |
7.92e-10 (6.15e-07) |
1.07e-10 (8.4e-08) |
5.22e-15 (4.29e-12) |
1.07e-16 (8.88e-14) |
1.05e-06 (0.000747) |
3.04e-08 (2.28e-05) |
18p gain | 0 (0%) | 455 |
0.379 (1.00) |
0.0902 (1.00) |
4.94e-14 (4.04e-11) |
6.07e-05 (0.0393) |
0.093 (1.00) |
0.429 (1.00) |
3.34e-05 (0.0221) |
7.28e-07 (0.000524) |
4.26e-09 (3.25e-06) |
6.47e-09 (4.92e-06) |
7.18e-05 (0.0463) |
0.000285 (0.174) |
4p loss | 0 (0%) | 426 |
0.0515 (1.00) |
0.00755 (1.00) |
4.79e-25 (4.05e-22) |
6.03e-11 (4.76e-08) |
0.0339 (1.00) |
0.393 (1.00) |
2.45e-09 (1.88e-06) |
1.29e-07 (9.51e-05) |
1.88e-13 (1.53e-10) |
4.44e-12 (3.58e-09) |
8.45e-05 (0.0542) |
1.78e-06 (0.00126) |
4q loss | 0 (0%) | 428 |
0.689 (1.00) |
0.272 (1.00) |
1.36e-26 (1.15e-23) |
2.15e-11 (1.71e-08) |
0.131 (1.00) |
0.776 (1.00) |
2.64e-08 (1.99e-05) |
2.45e-08 (1.84e-05) |
1.04e-10 (8.2e-08) |
1.39e-10 (1.09e-07) |
0.000184 (0.114) |
4.68e-06 (0.00325) |
8p loss | 0 (0%) | 439 |
0.00809 (1.00) |
0.00105 (0.595) |
4.01e-24 (3.39e-21) |
3.7e-11 (2.94e-08) |
0.165 (1.00) |
0.181 (1.00) |
4.84e-12 (3.89e-09) |
6.9e-10 (5.37e-07) |
4.01e-15 (3.3e-12) |
7.17e-17 (5.95e-14) |
9.38e-07 (0.000671) |
1.46e-07 (0.000108) |
14q loss | 0 (0%) | 450 |
0.00809 (1.00) |
0.00105 (0.595) |
8.94e-17 (7.41e-14) |
1.06e-09 (8.22e-07) |
0.0847 (1.00) |
0.0052 (1.00) |
3.38e-08 (2.52e-05) |
1.95e-07 (0.000143) |
3.34e-09 (2.55e-06) |
9.82e-12 (7.88e-09) |
2.03e-05 (0.0137) |
4.89e-05 (0.0318) |
16p loss | 0 (0%) | 423 |
0.00809 (1.00) |
0.00105 (0.595) |
2.82e-31 (2.4e-28) |
2.27e-09 (1.74e-06) |
0.193 (1.00) |
0.796 (1.00) |
7.52e-10 (5.84e-07) |
1.47e-09 (1.13e-06) |
1.47e-09 (1.13e-06) |
1.36e-10 (1.07e-07) |
2.56e-05 (0.017) |
1.82e-05 (0.0124) |
16q loss | 0 (0%) | 382 |
0.00324 (1.00) |
0.000454 (0.271) |
5.94e-40 (5.07e-37) |
2.1e-11 (1.68e-08) |
0.237 (1.00) |
1 (1.00) |
1.01e-11 (8.07e-09) |
2.34e-10 (1.83e-07) |
1.07e-11 (8.55e-09) |
1.9e-11 (1.52e-08) |
5.31e-06 (0.00368) |
6.9e-06 (0.00477) |
17p loss | 0 (0%) | 387 |
0.00324 (1.00) |
0.000454 (0.271) |
8.66e-53 (7.41e-50) |
7.43e-13 (6.02e-10) |
0.000571 (0.336) |
0.665 (1.00) |
1.6e-20 (1.35e-17) |
2.15e-21 (1.81e-18) |
4.87e-17 (4.05e-14) |
2.92e-15 (2.41e-12) |
2.51e-05 (0.0167) |
2.09e-05 (0.0141) |
20q gain | 0 (0%) | 414 |
0.0391 (1.00) |
0.00466 (1.00) |
3.62e-24 (3.07e-21) |
8.07e-08 (5.99e-05) |
0.192 (1.00) |
0.58 (1.00) |
1.75e-06 (0.00124) |
0.000621 (0.364) |
1.63e-11 (1.31e-08) |
3.65e-10 (2.84e-07) |
0.000178 (0.111) |
3.45e-05 (0.0228) |
5q loss | 0 (0%) | 447 |
0.0515 (1.00) |
0.00755 (1.00) |
1.18e-18 (9.85e-16) |
7.92e-09 (6.02e-06) |
0.0481 (1.00) |
0.153 (1.00) |
6.28e-08 (4.68e-05) |
2.96e-08 (2.22e-05) |
2.83e-09 (2.17e-06) |
7.58e-08 (5.63e-05) |
0.0022 (1.00) |
0.000107 (0.0684) |
9q loss | 0 (0%) | 399 |
0.000567 (0.334) |
4.17e-05 (0.0274) |
1.53e-37 (1.31e-34) |
4.84e-07 (0.000351) |
0.00601 (1.00) |
0.378 (1.00) |
2.56e-13 (2.08e-10) |
2.82e-16 (2.33e-13) |
2.09e-12 (1.69e-09) |
3.83e-10 (2.98e-07) |
0.00586 (1.00) |
0.00454 (1.00) |
19p loss | 0 (0%) | 458 |
4.63e-12 (3.73e-09) |
9.19e-08 (6.8e-05) |
0.331 (1.00) |
1 (1.00) |
1.84e-05 (0.0125) |
7.84e-06 (0.00541) |
1.01e-05 (0.00697) |
6.41e-07 (0.000462) |
8.18e-06 (0.00564) |
0.00205 (1.00) |
||
3q gain | 0 (0%) | 442 |
0.137 (1.00) |
0.272 (1.00) |
3.41e-22 (2.88e-19) |
2.37e-05 (0.0159) |
0.388 (1.00) |
0.301 (1.00) |
1.19e-06 (0.000849) |
5.14e-05 (0.0334) |
2.07e-05 (0.014) |
0.000263 (0.16) |
0.0342 (1.00) |
0.0187 (1.00) |
5p gain | 0 (0%) | 460 |
0.536 (1.00) |
0.272 (1.00) |
3.01e-09 (2.31e-06) |
0.000138 (0.0869) |
0.0311 (1.00) |
0.712 (1.00) |
3.95e-06 (0.00276) |
0.00042 (0.252) |
1.66e-05 (0.0113) |
5.29e-05 (0.0343) |
0.0011 (0.616) |
7.26e-05 (0.0468) |
3p loss | 0 (0%) | 461 |
1.34e-14 (1.09e-11) |
0.000129 (0.0814) |
0.000526 (0.311) |
0.028 (1.00) |
1.79e-07 (0.000131) |
8.63e-08 (6.4e-05) |
4.21e-05 (0.0276) |
2.37e-05 (0.0159) |
0.0114 (1.00) |
0.00685 (1.00) |
||
7q loss | 0 (0%) | 465 |
4.91e-14 (4.02e-11) |
0.000171 (0.107) |
0.197 (1.00) |
0.0121 (1.00) |
1.32e-07 (9.72e-05) |
1.59e-06 (0.00113) |
1.77e-05 (0.012) |
1.25e-05 (0.00857) |
0.0242 (1.00) |
0.00754 (1.00) |
||
9p loss | 0 (0%) | 416 |
0.0129 (1.00) |
0.00193 (1.00) |
2.63e-29 (2.23e-26) |
1.81e-06 (0.00128) |
0.0117 (1.00) |
0.244 (1.00) |
2.12e-12 (1.72e-09) |
7.6e-15 (6.24e-12) |
1.37e-09 (1.06e-06) |
1.19e-08 (9.01e-06) |
0.0266 (1.00) |
0.00914 (1.00) |
11p loss | 0 (0%) | 439 |
1.44e-21 (1.22e-18) |
8.9e-07 (0.000639) |
0.182 (1.00) |
0.75 (1.00) |
4.46e-08 (3.33e-05) |
2.6e-07 (0.00019) |
1.99e-08 (1.5e-05) |
1.99e-06 (0.0014) |
0.00537 (1.00) |
0.00296 (1.00) |
||
11q loss | 0 (0%) | 447 |
1.15e-15 (9.49e-13) |
7.9e-05 (0.0507) |
0.925 (1.00) |
0.713 (1.00) |
0.000397 (0.239) |
8.07e-06 (0.00557) |
2.54e-06 (0.00179) |
0.000184 (0.114) |
0.0184 (1.00) |
0.0242 (1.00) |
||
12p loss | 0 (0%) | 467 |
3.86e-11 (3.07e-08) |
0.000161 (0.101) |
0.0577 (1.00) |
1 (1.00) |
3.62e-05 (0.0238) |
0.0057 (1.00) |
9.52e-08 (7.04e-05) |
4.34e-06 (0.00303) |
0.00716 (1.00) |
0.000374 (0.226) |
||
13q loss | 0 (0%) | 432 |
0.689 (1.00) |
0.272 (1.00) |
2.43e-18 (2.02e-15) |
0.000107 (0.0679) |
0.161 (1.00) |
0.393 (1.00) |
0.000395 (0.238) |
3.89e-06 (0.00272) |
7.27e-05 (0.0468) |
0.000188 (0.117) |
0.217 (1.00) |
0.0539 (1.00) |
17q loss | 0 (0%) | 424 |
0.00809 (1.00) |
0.00105 (0.595) |
1.48e-29 (1.26e-26) |
3.37e-05 (0.0222) |
0.0924 (1.00) |
0.612 (1.00) |
4.28e-09 (3.26e-06) |
1.95e-11 (1.55e-08) |
2.71e-07 (0.000198) |
5.5e-07 (0.000398) |
0.0044 (1.00) |
0.00187 (1.00) |
18q loss | 0 (0%) | 443 |
9.75e-18 (8.11e-15) |
1.92e-06 (0.00135) |
0.725 (1.00) |
1 (1.00) |
3.87e-06 (0.00271) |
5.65e-07 (0.000408) |
3.04e-06 (0.00213) |
2.59e-07 (0.00019) |
0.0139 (1.00) |
0.00317 (1.00) |
||
22q loss | 0 (0%) | 405 |
0.00809 (1.00) |
0.00105 (0.595) |
1.41e-36 (1.2e-33) |
3.23e-08 (2.42e-05) |
0.0721 (1.00) |
1 (1.00) |
4.88e-11 (3.86e-08) |
3.29e-14 (2.69e-11) |
9.64e-11 (7.6e-08) |
1.01e-09 (7.84e-07) |
0.0097 (1.00) |
0.00158 (0.876) |
19p gain | 0 (0%) | 461 |
0.0391 (1.00) |
0.00466 (1.00) |
2.4e-13 (1.96e-10) |
0.00345 (1.00) |
0.528 (1.00) |
0.151 (1.00) |
4.73e-06 (0.00329) |
1.84e-05 (0.0125) |
9.18e-07 (0.000658) |
3.24e-05 (0.0215) |
0.104 (1.00) |
0.116 (1.00) |
19q gain | 0 (0%) | 464 |
4.28e-13 (3.47e-10) |
0.00143 (0.794) |
0.085 (1.00) |
1 (1.00) |
4.73e-06 (0.00329) |
1.59e-06 (0.00113) |
8.12e-07 (0.000584) |
2.17e-05 (0.0146) |
0.0313 (1.00) |
0.0659 (1.00) |
||
20p gain | 0 (0%) | 427 |
0.137 (1.00) |
0.0194 (1.00) |
2.28e-18 (1.9e-15) |
3.25e-05 (0.0216) |
0.291 (1.00) |
1 (1.00) |
9.04e-05 (0.0578) |
0.0119 (1.00) |
1.84e-08 (1.39e-05) |
4.4e-07 (0.000319) |
0.00425 (1.00) |
0.000627 (0.367) |
21q loss | 0 (0%) | 460 |
0.0391 (1.00) |
0.00466 (1.00) |
6.47e-08 (4.82e-05) |
0.00259 (1.00) |
0.095 (1.00) |
0.75 (1.00) |
0.000148 (0.0933) |
0.00136 (0.762) |
0.00097 (0.553) |
4.43e-05 (0.0289) |
0.00022 (0.135) |
0.000203 (0.126) |
1q gain | 0 (0%) | 354 |
0.25 (1.00) |
0.29 (1.00) |
3.04e-07 (0.000222) |
0.00646 (1.00) |
0.00123 (0.687) |
0.000715 (0.415) |
3.31e-06 (0.00232) |
9.23e-07 (0.000661) |
3.74e-07 (0.000272) |
0.0178 (1.00) |
0.278 (1.00) |
0.0102 (1.00) |
13q gain | 0 (0%) | 472 |
9.55e-08 (7.05e-05) |
0.00465 (1.00) |
0.735 (1.00) |
0.367 (1.00) |
7.14e-05 (0.0461) |
0.000462 (0.275) |
3.45e-05 (0.0228) |
4.23e-05 (0.0277) |
0.169 (1.00) |
0.114 (1.00) |
||
21q gain | 0 (0%) | 467 |
1.13e-08 (8.61e-06) |
0.0756 (1.00) |
0.237 (1.00) |
0.558 (1.00) |
0.000204 (0.126) |
0.0095 (1.00) |
0.000414 (0.249) |
0.000375 (0.227) |
0.314 (1.00) |
0.119 (1.00) |
||
12q loss | 0 (0%) | 474 |
1.23e-09 (9.5e-07) |
9.44e-05 (0.0602) |
0.31 (1.00) |
0.429 (1.00) |
0.00106 (0.595) |
0.0067 (1.00) |
1.25e-06 (0.000891) |
1.67e-06 (0.00118) |
0.00628 (1.00) |
0.000788 (0.453) |
||
19q loss | 0 (0%) | 464 |
1.79e-08 (1.35e-05) |
5.03e-05 (0.0327) |
0.734 (1.00) |
0.713 (1.00) |
0.000719 (0.416) |
0.00283 (1.00) |
0.000676 (0.394) |
1.46e-05 (0.01) |
0.000124 (0.0788) |
0.0122 (1.00) |
||
8q gain | 0 (0%) | 374 |
0.0336 (1.00) |
0.0339 (1.00) |
1.65e-21 (1.39e-18) |
0.345 (1.00) |
0.00495 (1.00) |
1 (1.00) |
0.00591 (1.00) |
0.000299 (0.182) |
0.0018 (0.996) |
3.27e-05 (0.0216) |
0.0834 (1.00) |
0.00151 (0.841) |
5p loss | 0 (0%) | 465 |
0.379 (1.00) |
0.0902 (1.00) |
1.16e-10 (9.13e-08) |
0.000323 (0.196) |
0.162 (1.00) |
0.181 (1.00) |
0.000782 (0.451) |
0.000672 (0.392) |
0.000216 (0.133) |
0.00281 (1.00) |
0.149 (1.00) |
0.0611 (1.00) |
7p loss | 0 (0%) | 463 |
0.137 (1.00) |
0.0194 (1.00) |
9.88e-10 (7.66e-07) |
0.00652 (1.00) |
0.158 (1.00) |
0.201 (1.00) |
0.000162 (0.102) |
2.27e-05 (0.0152) |
0.000783 (0.451) |
0.00338 (1.00) |
0.185 (1.00) |
0.141 (1.00) |
10p loss | 0 (0%) | 469 |
0.137 (1.00) |
0.0194 (1.00) |
4e-11 (3.17e-08) |
0.000323 (0.196) |
0.474 (1.00) |
0.633 (1.00) |
0.000469 (0.278) |
0.0016 (0.886) |
1.25e-05 (0.00856) |
0.00108 (0.608) |
0.0777 (1.00) |
0.0284 (1.00) |
10q loss | 0 (0%) | 468 |
2.94e-10 (2.3e-07) |
0.000161 (0.101) |
0.451 (1.00) |
1 (1.00) |
0.000469 (0.278) |
0.0057 (1.00) |
0.000214 (0.132) |
0.00195 (1.00) |
0.123 (1.00) |
0.112 (1.00) |
||
18p loss | 0 (0%) | 456 |
3.15e-12 (2.54e-09) |
1.88e-05 (0.0128) |
0.326 (1.00) |
0.746 (1.00) |
0.00066 (0.385) |
0.000172 (0.107) |
0.00472 (1.00) |
0.000594 (0.349) |
0.0533 (1.00) |
0.0214 (1.00) |
||
Xq loss | 0 (0%) | 474 |
2.97e-07 (0.000216) |
0.000545 (0.321) |
0.617 (1.00) |
0.633 (1.00) |
0.016 (1.00) |
0.0067 (1.00) |
0.000233 (0.143) |
2.27e-05 (0.0152) |
0.00425 (1.00) |
0.00287 (1.00) |
||
18q gain | 0 (0%) | 472 |
0.137 (1.00) |
0.0194 (1.00) |
8.26e-06 (0.00568) |
0.00501 (1.00) |
1 (1.00) |
0.0173 (1.00) |
0.00565 (1.00) |
0.000111 (0.0703) |
0.000436 (0.261) |
0.00137 (0.764) |
0.028 (1.00) |
|
8q loss | 0 (0%) | 480 |
2.23e-05 (0.015) |
0.000917 (0.525) |
1 (1.00) |
0.0396 (1.00) |
0.154 (1.00) |
0.000302 (0.183) |
0.000443 (0.265) |
0.00295 (1.00) |
0.0128 (1.00) |
|||
2p gain | 0 (0%) | 441 |
0.425 (1.00) |
0.481 (1.00) |
5.41e-11 (4.27e-08) |
0.055 (1.00) |
0.177 (1.00) |
0.802 (1.00) |
0.238 (1.00) |
0.434 (1.00) |
0.0184 (1.00) |
0.162 (1.00) |
0.141 (1.00) |
0.0236 (1.00) |
2q gain | 0 (0%) | 452 |
0.343 (1.00) |
1 (1.00) |
4.83e-11 (3.82e-08) |
0.169 (1.00) |
0.0653 (1.00) |
0.575 (1.00) |
0.3 (1.00) |
0.624 (1.00) |
0.015 (1.00) |
0.117 (1.00) |
0.0819 (1.00) |
0.0313 (1.00) |
3p gain | 0 (0%) | 464 |
4.15e-19 (3.48e-16) |
0.111 (1.00) |
0.525 (1.00) |
0.652 (1.00) |
0.0149 (1.00) |
0.0429 (1.00) |
0.338 (1.00) |
0.225 (1.00) |
0.404 (1.00) |
0.416 (1.00) |
||
6p gain | 0 (0%) | 454 |
0.253 (1.00) |
0.0902 (1.00) |
1.52e-16 (1.26e-13) |
0.0313 (1.00) |
0.661 (1.00) |
1 (1.00) |
0.00665 (1.00) |
0.0075 (1.00) |
0.0121 (1.00) |
0.0302 (1.00) |
0.202 (1.00) |
0.425 (1.00) |
6q gain | 0 (0%) | 462 |
0.253 (1.00) |
0.0902 (1.00) |
1.58e-13 (1.29e-10) |
0.318 (1.00) |
0.401 (1.00) |
1 (1.00) |
0.00839 (1.00) |
0.00793 (1.00) |
0.168 (1.00) |
0.278 (1.00) |
0.599 (1.00) |
0.708 (1.00) |
7p gain | 0 (0%) | 449 |
0.935 (1.00) |
0.866 (1.00) |
8.62e-19 (7.22e-16) |
0.0125 (1.00) |
0.733 (1.00) |
0.217 (1.00) |
1 (1.00) |
0.475 (1.00) |
0.244 (1.00) |
0.609 (1.00) |
0.799 (1.00) |
0.481 (1.00) |
7q gain | 0 (0%) | 449 |
0.855 (1.00) |
1 (1.00) |
2.4e-19 (2.01e-16) |
0.0252 (1.00) |
0.889 (1.00) |
0.0552 (1.00) |
0.385 (1.00) |
0.0331 (1.00) |
0.44 (1.00) |
0.425 (1.00) |
0.909 (1.00) |
0.766 (1.00) |
8p gain | 0 (0%) | 406 |
0.704 (1.00) |
0.609 (1.00) |
7.48e-18 (6.23e-15) |
0.941 (1.00) |
0.133 (1.00) |
1 (1.00) |
0.474 (1.00) |
0.434 (1.00) |
0.38 (1.00) |
0.0022 (1.00) |
0.416 (1.00) |
0.00575 (1.00) |
10q gain | 0 (0%) | 413 |
0.00212 (1.00) |
0.0262 (1.00) |
9.34e-05 (0.0597) |
0.145 (1.00) |
0.388 (1.00) |
0.252 (1.00) |
0.0262 (1.00) |
0.256 (1.00) |
0.0128 (1.00) |
0.00257 (1.00) |
0.0446 (1.00) |
0.0217 (1.00) |
12p gain | 0 (0%) | 455 |
0.64 (1.00) |
1 (1.00) |
4.78e-08 (3.57e-05) |
0.00794 (1.00) |
0.937 (1.00) |
1 (1.00) |
0.0455 (1.00) |
0.0906 (1.00) |
0.0241 (1.00) |
0.0169 (1.00) |
0.127 (1.00) |
0.116 (1.00) |
12q gain | 0 (0%) | 464 |
0.64 (1.00) |
1 (1.00) |
3.68e-07 (0.000268) |
0.106 (1.00) |
0.901 (1.00) |
1 (1.00) |
0.0811 (1.00) |
0.227 (1.00) |
0.126 (1.00) |
0.311 (1.00) |
0.412 (1.00) |
0.304 (1.00) |
14q gain | 0 (0%) | 472 |
1 (1.00) |
0.769 (1.00) |
2.16e-05 (0.0146) |
0.214 (1.00) |
0.239 (1.00) |
0.292 (1.00) |
0.401 (1.00) |
0.0737 (1.00) |
0.0486 (1.00) |
0.0281 (1.00) |
0.303 (1.00) |
0.418 (1.00) |
17p gain | 0 (0%) | 485 |
2.6e-05 (0.0173) |
0.241 (1.00) |
1 (1.00) |
0.316 (1.00) |
0.315 (1.00) |
0.0701 (1.00) |
0.145 (1.00) |
0.855 (1.00) |
0.824 (1.00) |
|||
Xq gain | 0 (0%) | 480 |
0.000257 (0.157) |
0.321 (1.00) |
0.376 (1.00) |
0.157 (1.00) |
0.447 (1.00) |
0.00871 (1.00) |
0.0888 (1.00) |
0.088 (1.00) |
0.6 (1.00) |
|||
1p loss | 0 (0%) | 479 |
1.82e-08 (1.38e-05) |
0.000917 (0.525) |
1 (1.00) |
0.0403 (1.00) |
0.0884 (1.00) |
0.0517 (1.00) |
0.00318 (1.00) |
0.17 (1.00) |
0.0522 (1.00) |
|||
3q loss | 0 (0%) | 480 |
4.31e-05 (0.0281) |
0.0574 (1.00) |
0.024 (1.00) |
0.558 (1.00) |
0.00479 (1.00) |
0.00274 (1.00) |
0.0347 (1.00) |
0.0739 (1.00) |
0.0772 (1.00) |
0.329 (1.00) |
||
6q loss | 0 (0%) | 480 |
0.689 (1.00) |
0.272 (1.00) |
0.000236 (0.145) |
0.0349 (1.00) |
0.858 (1.00) |
0.558 (1.00) |
0.016 (1.00) |
0.0384 (1.00) |
0.133 (1.00) |
0.0103 (1.00) |
0.136 (1.00) |
0.219 (1.00) |
20p loss | 0 (0%) | 477 |
0.000122 (0.0775) |
0.106 (1.00) |
0.243 (1.00) |
0.633 (1.00) |
0.0368 (1.00) |
0.0465 (1.00) |
0.00635 (1.00) |
0.0702 (1.00) |
0.241 (1.00) |
0.148 (1.00) |
||
1p gain | 0 (0%) | 471 |
0.467 (1.00) |
0.491 (1.00) |
0.035 (1.00) |
0.661 (1.00) |
0.401 (1.00) |
1 (1.00) |
0.182 (1.00) |
0.29 (1.00) |
0.00743 (1.00) |
0.0758 (1.00) |
0.166 (1.00) |
0.143 (1.00) |
4p gain | 0 (0%) | 486 |
0.0039 (1.00) |
0.123 (1.00) |
0.14 (1.00) |
0.0396 (1.00) |
0.154 (1.00) |
0.0229 (1.00) |
0.0281 (1.00) |
0.425 (1.00) |
0.442 (1.00) |
|||
5q gain | 0 (0%) | 483 |
0.00286 (1.00) |
0.423 (1.00) |
1 (1.00) |
0.0679 (1.00) |
0.286 (1.00) |
0.052 (1.00) |
0.203 (1.00) |
0.151 (1.00) |
0.0719 (1.00) |
|||
9p gain | 0 (0%) | 478 |
0.0484 (1.00) |
0.0841 (1.00) |
1 (1.00) |
0.822 (1.00) |
0.0787 (1.00) |
0.0699 (1.00) |
0.0294 (1.00) |
0.124 (1.00) |
0.0684 (1.00) |
|||
9q gain | 0 (0%) | 488 |
0.352 (1.00) |
0.361 (1.00) |
0.781 (1.00) |
0.361 (1.00) |
0.387 (1.00) |
0.127 (1.00) |
0.425 (1.00) |
0.0728 (1.00) |
||||
10p gain | 0 (0%) | 405 |
0.00714 (1.00) |
0.0476 (1.00) |
0.0007 (0.406) |
0.171 (1.00) |
0.284 (1.00) |
0.136 (1.00) |
0.0155 (1.00) |
0.255 (1.00) |
0.0639 (1.00) |
0.0178 (1.00) |
0.0535 (1.00) |
0.027 (1.00) |
11p gain | 0 (0%) | 484 |
0.137 (1.00) |
0.272 (1.00) |
0.0099 (1.00) |
0.036 (1.00) |
0.109 (1.00) |
1 (1.00) |
0.157 (1.00) |
0.447 (1.00) |
0.13 (1.00) |
0.238 (1.00) |
0.821 (1.00) |
0.784 (1.00) |
11q gain | 0 (0%) | 484 |
0.0111 (1.00) |
0.374 (1.00) |
0.109 (1.00) |
0.299 (1.00) |
0.194 (1.00) |
0.396 (1.00) |
0.242 (1.00) |
0.361 (1.00) |
1 (1.00) |
1 (1.00) |
||
15q gain | 0 (0%) | 486 |
0.00416 (1.00) |
0.846 (1.00) |
1 (1.00) |
0.828 (1.00) |
0.699 (1.00) |
0.884 (1.00) |
1 (1.00) |
0.36 (1.00) |
0.208 (1.00) |
|||
16p gain | 0 (0%) | 480 |
0.000794 (0.456) |
0.0309 (1.00) |
0.243 (1.00) |
1 (1.00) |
0.0679 (1.00) |
0.0787 (1.00) |
0.0831 (1.00) |
0.336 (1.00) |
0.586 (1.00) |
0.329 (1.00) |
||
16q gain | 0 (0%) | 488 |
0.046 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.861 (1.00) |
0.785 (1.00) |
1 (1.00) |
|||||
17q gain | 0 (0%) | 479 |
0.000727 (0.42) |
0.00345 (1.00) |
0.0531 (1.00) |
1 (1.00) |
0.0276 (1.00) |
0.284 (1.00) |
0.00887 (1.00) |
0.011 (1.00) |
0.14 (1.00) |
0.0854 (1.00) |
||
22q gain | 0 (0%) | 483 |
0.00473 (1.00) |
0.000524 (0.31) |
0.376 (1.00) |
0.115 (1.00) |
0.361 (1.00) |
0.00132 (0.739) |
0.00259 (1.00) |
0.0536 (1.00) |
0.0391 (1.00) |
|||
1q loss | 0 (0%) | 488 |
0.0365 (1.00) |
0.0562 (1.00) |
0.115 (1.00) |
0.361 (1.00) |
0.0991 (1.00) |
0.127 (1.00) |
0.425 (1.00) |
0.442 (1.00) |
||||
2p loss | 0 (0%) | 486 |
0.019 (1.00) |
0.517 (1.00) |
0.14 (1.00) |
0.157 (1.00) |
0.0878 (1.00) |
0.773 (1.00) |
0.199 (1.00) |
0.855 (1.00) |
0.161 (1.00) |
|||
2q loss | 0 (0%) | 484 |
0.00637 (1.00) |
0.197 (1.00) |
0.14 (1.00) |
0.157 (1.00) |
0.0878 (1.00) |
0.493 (1.00) |
0.192 (1.00) |
0.685 (1.00) |
0.277 (1.00) |
|||
6p loss | 0 (0%) | 482 |
0.689 (1.00) |
0.272 (1.00) |
0.000862 (0.494) |
0.0945 (1.00) |
0.858 (1.00) |
0.558 (1.00) |
0.194 (1.00) |
0.249 (1.00) |
0.172 (1.00) |
0.0171 (1.00) |
0.279 (1.00) |
0.548 (1.00) |
20q loss | 0 (0%) | 485 |
0.0106 (1.00) |
0.0526 (1.00) |
0.528 (1.00) |
0.391 (1.00) |
0.474 (1.00) |
0.164 (1.00) |
0.078 (1.00) |
0.127 (1.00) |
0.171 (1.00) |
P value = 3.04e-07 (Chi-square test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
1Q GAIN CNV | 85 | 18 | 21 | 8 | 6 |
1Q GAIN WILD-TYPE | 205 | 22 | 118 | 9 | 0 |
P value = 3.31e-06 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
1Q GAIN CNV | 24 | 26 | 51 |
1Q GAIN WILD-TYPE | 118 | 81 | 62 |
P value = 9.23e-07 (Fisher's exact test), Q value = 0.00066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
1Q GAIN CNV | 26 | 24 | 31 | 20 |
1Q GAIN WILD-TYPE | 39 | 68 | 34 | 120 |
P value = 3.74e-07 (Fisher's exact test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
1Q GAIN CNV | 41 | 35 | 62 |
1Q GAIN WILD-TYPE | 166 | 109 | 70 |
P value = 5.41e-11 (Chi-square test), Q value = 4.3e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
2P GAIN CNV | 9 | 14 | 22 | 5 | 1 |
2P GAIN WILD-TYPE | 281 | 26 | 117 | 12 | 5 |
P value = 4.83e-11 (Chi-square test), Q value = 3.8e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
2Q GAIN CNV | 6 | 13 | 16 | 4 | 1 |
2Q GAIN WILD-TYPE | 284 | 27 | 123 | 13 | 5 |
P value = 4.15e-19 (Chi-square test), Q value = 3.5e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
3P GAIN CNV | 1 | 4 | 13 | 9 | 1 |
3P GAIN WILD-TYPE | 289 | 36 | 126 | 8 | 5 |
P value = 3.41e-22 (Chi-square test), Q value = 2.9e-19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
3Q GAIN CNV | 2 | 5 | 31 | 11 | 1 |
3Q GAIN WILD-TYPE | 288 | 35 | 108 | 6 | 5 |
P value = 2.37e-05 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
3Q GAIN CNV | 29 | 6 | 6 |
3Q GAIN WILD-TYPE | 114 | 78 | 144 |
P value = 1.19e-06 (Fisher's exact test), Q value = 0.00085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
3Q GAIN CNV | 26 | 6 | 1 |
3Q GAIN WILD-TYPE | 116 | 101 | 112 |
P value = 5.14e-05 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
3Q GAIN CNV | 0 | 3 | 7 | 23 |
3Q GAIN WILD-TYPE | 65 | 89 | 58 | 117 |
P value = 2.07e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
3Q GAIN CNV | 37 | 7 | 6 |
3Q GAIN WILD-TYPE | 170 | 137 | 126 |
P value = 0.000263 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
3Q GAIN CNV | 9 | 5 | 4 | 32 |
3Q GAIN WILD-TYPE | 184 | 74 | 23 | 152 |
P value = 3.01e-09 (Chi-square test), Q value = 2.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
5P GAIN CNV | 3 | 2 | 25 | 1 | 1 |
5P GAIN WILD-TYPE | 287 | 38 | 114 | 16 | 5 |
P value = 0.000138 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
5P GAIN CNV | 20 | 3 | 3 |
5P GAIN WILD-TYPE | 123 | 81 | 147 |
P value = 3.95e-06 (Fisher's exact test), Q value = 0.0028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
5P GAIN CNV | 19 | 0 | 3 |
5P GAIN WILD-TYPE | 123 | 107 | 110 |
P value = 1.66e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
5P GAIN CNV | 25 | 1 | 5 |
5P GAIN WILD-TYPE | 182 | 143 | 127 |
P value = 5.29e-05 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
5P GAIN CNV | 3 | 3 | 1 | 24 |
5P GAIN WILD-TYPE | 190 | 76 | 26 | 160 |
P value = 7.26e-05 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
5P GAIN CNV | 0 | 22 | 3 |
5P GAIN WILD-TYPE | 117 | 175 | 42 |
P value = 1.52e-16 (Chi-square test), Q value = 1.3e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
6P GAIN CNV | 1 | 3 | 25 | 8 | 1 |
6P GAIN WILD-TYPE | 289 | 37 | 114 | 9 | 5 |
P value = 1.58e-13 (Chi-square test), Q value = 1.3e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
6Q GAIN CNV | 1 | 3 | 18 | 7 | 1 |
6Q GAIN WILD-TYPE | 289 | 37 | 121 | 10 | 5 |
P value = 8.62e-19 (Chi-square test), Q value = 7.2e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
7P GAIN CNV | 5 | 17 | 14 | 6 | 1 |
7P GAIN WILD-TYPE | 285 | 23 | 125 | 11 | 5 |
P value = 2.4e-19 (Chi-square test), Q value = 2e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
7Q GAIN CNV | 8 | 17 | 10 | 7 | 1 |
7Q GAIN WILD-TYPE | 282 | 23 | 129 | 10 | 5 |
P value = 7.48e-18 (Chi-square test), Q value = 6.2e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
8P GAIN CNV | 28 | 16 | 25 | 15 | 2 |
8P GAIN WILD-TYPE | 262 | 24 | 114 | 2 | 4 |
P value = 1.65e-21 (Chi-square test), Q value = 1.4e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
8Q GAIN CNV | 29 | 19 | 51 | 16 | 3 |
8Q GAIN WILD-TYPE | 261 | 21 | 88 | 1 | 3 |
P value = 0.000299 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
8Q GAIN CNV | 10 | 12 | 9 | 47 |
8Q GAIN WILD-TYPE | 55 | 80 | 56 | 93 |
P value = 3.27e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
8Q GAIN CNV | 28 | 17 | 13 | 57 |
8Q GAIN WILD-TYPE | 165 | 62 | 14 | 127 |
P value = 9.34e-05 (Chi-square test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
10Q GAIN CNV | 44 | 12 | 13 | 7 | 3 |
10Q GAIN WILD-TYPE | 246 | 28 | 126 | 10 | 3 |
P value = 4.78e-08 (Chi-square test), Q value = 3.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
12P GAIN CNV | 7 | 7 | 19 | 1 | 3 |
12P GAIN WILD-TYPE | 283 | 33 | 120 | 16 | 3 |
P value = 3.68e-07 (Chi-square test), Q value = 0.00027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
12Q GAIN CNV | 7 | 6 | 11 | 1 | 3 |
12Q GAIN WILD-TYPE | 283 | 34 | 128 | 16 | 3 |
P value = 9.55e-08 (Chi-square test), Q value = 7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
13Q GAIN CNV | 1 | 0 | 17 | 1 | 1 |
13Q GAIN WILD-TYPE | 289 | 40 | 122 | 16 | 5 |
P value = 7.14e-05 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
13Q GAIN CNV | 13 | 1 | 0 |
13Q GAIN WILD-TYPE | 129 | 106 | 113 |
P value = 3.45e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
13Q GAIN CNV | 18 | 2 | 0 |
13Q GAIN WILD-TYPE | 189 | 142 | 132 |
P value = 4.23e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
13Q GAIN CNV | 2 | 0 | 0 | 18 |
13Q GAIN WILD-TYPE | 191 | 79 | 27 | 166 |
P value = 2.16e-05 (Chi-square test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
14Q GAIN CNV | 2 | 2 | 13 | 3 | 0 |
14Q GAIN WILD-TYPE | 288 | 38 | 126 | 14 | 6 |
P value = 2.6e-05 (Chi-square test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
17P GAIN CNV | 1 | 0 | 3 | 2 | 1 |
17P GAIN WILD-TYPE | 289 | 40 | 136 | 15 | 5 |
P value = 4.94e-14 (Chi-square test), Q value = 4e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
18P GAIN CNV | 2 | 2 | 32 | 1 | 0 |
18P GAIN WILD-TYPE | 288 | 38 | 107 | 16 | 6 |
P value = 6.07e-05 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
18P GAIN CNV | 20 | 8 | 2 |
18P GAIN WILD-TYPE | 123 | 76 | 148 |
P value = 3.34e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
18P GAIN CNV | 18 | 2 | 1 |
18P GAIN WILD-TYPE | 124 | 105 | 112 |
P value = 7.28e-07 (Fisher's exact test), Q value = 0.00052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
18P GAIN CNV | 0 | 1 | 0 | 20 |
18P GAIN WILD-TYPE | 65 | 91 | 65 | 120 |
P value = 4.26e-09 (Fisher's exact test), Q value = 3.2e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
18P GAIN CNV | 33 | 1 | 3 |
18P GAIN WILD-TYPE | 174 | 143 | 129 |
P value = 6.47e-09 (Fisher's exact test), Q value = 4.9e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
18P GAIN CNV | 2 | 3 | 0 | 32 |
18P GAIN WILD-TYPE | 191 | 76 | 27 | 152 |
P value = 7.18e-05 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
18P GAIN CNV | 24 | 1 | 6 |
18P GAIN WILD-TYPE | 145 | 115 | 68 |
P value = 0.000285 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
18P GAIN CNV | 2 | 27 | 2 |
18P GAIN WILD-TYPE | 115 | 170 | 43 |
P value = 8.26e-06 (Chi-square test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
18Q GAIN CNV | 2 | 1 | 16 | 1 | 0 |
18Q GAIN WILD-TYPE | 288 | 39 | 123 | 16 | 6 |
P value = 0.000111 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
18Q GAIN CNV | 17 | 0 | 3 |
18Q GAIN WILD-TYPE | 190 | 144 | 129 |
P value = 2.4e-13 (Chi-square test), Q value = 2e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
19P GAIN CNV | 0 | 1 | 27 | 3 | 0 |
19P GAIN WILD-TYPE | 290 | 39 | 112 | 14 | 6 |
P value = 4.73e-06 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
19P GAIN CNV | 16 | 1 | 0 |
19P GAIN WILD-TYPE | 126 | 106 | 113 |
P value = 1.84e-05 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
19P GAIN CNV | 0 | 0 | 1 | 16 |
19P GAIN WILD-TYPE | 65 | 92 | 64 | 124 |
P value = 9.18e-07 (Fisher's exact test), Q value = 0.00066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
19P GAIN CNV | 27 | 3 | 1 |
19P GAIN WILD-TYPE | 180 | 141 | 131 |
P value = 3.24e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
19P GAIN CNV | 4 | 1 | 2 | 24 |
19P GAIN WILD-TYPE | 189 | 78 | 25 | 160 |
P value = 4.28e-13 (Chi-square test), Q value = 3.5e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
19Q GAIN CNV | 0 | 0 | 25 | 3 | 0 |
19Q GAIN WILD-TYPE | 290 | 40 | 114 | 14 | 6 |
P value = 4.73e-06 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
19Q GAIN CNV | 16 | 1 | 0 |
19Q GAIN WILD-TYPE | 126 | 106 | 113 |
P value = 1.59e-06 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
19Q GAIN CNV | 0 | 0 | 0 | 17 |
19Q GAIN WILD-TYPE | 65 | 92 | 65 | 123 |
P value = 8.12e-07 (Fisher's exact test), Q value = 0.00058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
19Q GAIN CNV | 25 | 2 | 1 |
19Q GAIN WILD-TYPE | 182 | 142 | 131 |
P value = 2.17e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
19Q GAIN CNV | 3 | 1 | 1 | 23 |
19Q GAIN WILD-TYPE | 190 | 78 | 26 | 161 |
P value = 2.28e-18 (Chi-square test), Q value = 1.9e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
20P GAIN CNV | 4 | 13 | 43 | 3 | 2 |
20P GAIN WILD-TYPE | 286 | 27 | 96 | 14 | 4 |
P value = 3.25e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
20P GAIN CNV | 37 | 9 | 11 |
20P GAIN WILD-TYPE | 106 | 75 | 139 |
P value = 9.04e-05 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
20P GAIN CNV | 27 | 5 | 5 |
20P GAIN WILD-TYPE | 115 | 102 | 108 |
P value = 1.84e-08 (Fisher's exact test), Q value = 1.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
20P GAIN CNV | 50 | 7 | 8 |
20P GAIN WILD-TYPE | 157 | 137 | 124 |
P value = 4.4e-07 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
20P GAIN CNV | 11 | 10 | 0 | 44 |
20P GAIN WILD-TYPE | 182 | 69 | 27 | 140 |
P value = 3.62e-24 (Chi-square test), Q value = 3.1e-21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
20Q GAIN CNV | 4 | 15 | 54 | 3 | 2 |
20Q GAIN WILD-TYPE | 286 | 25 | 85 | 14 | 4 |
P value = 8.07e-08 (Fisher's exact test), Q value = 6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
20Q GAIN CNV | 47 | 10 | 12 |
20Q GAIN WILD-TYPE | 96 | 74 | 138 |
P value = 1.75e-06 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
20Q GAIN CNV | 32 | 5 | 5 |
20Q GAIN WILD-TYPE | 110 | 102 | 108 |
P value = 1.63e-11 (Fisher's exact test), Q value = 1.3e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
20Q GAIN CNV | 61 | 8 | 8 |
20Q GAIN WILD-TYPE | 146 | 136 | 124 |
P value = 3.65e-10 (Fisher's exact test), Q value = 2.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
20Q GAIN CNV | 12 | 10 | 0 | 55 |
20Q GAIN WILD-TYPE | 181 | 69 | 27 | 129 |
P value = 0.000178 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
20Q GAIN CNV | 45 | 9 | 13 |
20Q GAIN WILD-TYPE | 124 | 107 | 61 |
P value = 3.45e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
20Q GAIN CNV | 8 | 52 | 7 |
20Q GAIN WILD-TYPE | 109 | 145 | 38 |
P value = 1.13e-08 (Chi-square test), Q value = 8.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
21Q GAIN CNV | 1 | 2 | 21 | 1 | 0 |
21Q GAIN WILD-TYPE | 289 | 38 | 118 | 16 | 6 |
P value = 0.000204 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
21Q GAIN CNV | 12 | 1 | 0 |
21Q GAIN WILD-TYPE | 130 | 106 | 113 |
P value = 0.000414 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
21Q GAIN CNV | 20 | 4 | 1 |
21Q GAIN WILD-TYPE | 187 | 140 | 131 |
P value = 0.000375 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
21Q GAIN CNV | 4 | 1 | 0 | 20 |
21Q GAIN WILD-TYPE | 189 | 78 | 27 | 164 |
P value = 0.000257 (Chi-square test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
XQ GAIN CNV | 0 | 1 | 10 | 1 | 0 |
XQ GAIN WILD-TYPE | 290 | 39 | 129 | 16 | 6 |
P value = 1.82e-08 (Chi-square test), Q value = 1.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
1P LOSS CNV | 0 | 4 | 7 | 0 | 2 |
1P LOSS WILD-TYPE | 290 | 36 | 132 | 17 | 4 |
P value = 1.34e-14 (Chi-square test), Q value = 1.1e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
3P LOSS CNV | 0 | 2 | 29 | 0 | 0 |
3P LOSS WILD-TYPE | 290 | 38 | 110 | 17 | 6 |
P value = 0.000129 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
3P LOSS CNV | 19 | 6 | 2 |
3P LOSS WILD-TYPE | 124 | 78 | 148 |
P value = 1.79e-07 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
3P LOSS CNV | 19 | 1 | 0 |
3P LOSS WILD-TYPE | 123 | 106 | 113 |
P value = 8.63e-08 (Fisher's exact test), Q value = 6.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
3P LOSS CNV | 0 | 0 | 0 | 20 |
3P LOSS WILD-TYPE | 65 | 92 | 65 | 120 |
P value = 4.21e-05 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
3P LOSS CNV | 24 | 2 | 3 |
3P LOSS WILD-TYPE | 183 | 142 | 129 |
P value = 2.37e-05 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
3P LOSS CNV | 2 | 3 | 1 | 23 |
3P LOSS WILD-TYPE | 191 | 76 | 26 | 161 |
P value = 4.31e-05 (Chi-square test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
3Q LOSS CNV | 0 | 1 | 11 | 0 | 0 |
3Q LOSS WILD-TYPE | 290 | 39 | 128 | 17 | 6 |
P value = 4.79e-25 (Chi-square test), Q value = 4.1e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
4P LOSS CNV | 2 | 8 | 54 | 1 | 1 |
4P LOSS WILD-TYPE | 288 | 32 | 85 | 16 | 5 |
P value = 6.03e-11 (Fisher's exact test), Q value = 4.8e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
4P LOSS CNV | 41 | 15 | 3 |
4P LOSS WILD-TYPE | 102 | 69 | 147 |
P value = 2.45e-09 (Fisher's exact test), Q value = 1.9e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
4P LOSS CNV | 30 | 1 | 3 |
4P LOSS WILD-TYPE | 112 | 106 | 110 |
P value = 1.29e-07 (Fisher's exact test), Q value = 9.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
4P LOSS CNV | 2 | 1 | 2 | 29 |
4P LOSS WILD-TYPE | 63 | 91 | 63 | 111 |
P value = 1.88e-13 (Fisher's exact test), Q value = 1.5e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
4P LOSS CNV | 55 | 4 | 5 |
4P LOSS WILD-TYPE | 152 | 140 | 127 |
P value = 4.44e-12 (Fisher's exact test), Q value = 3.6e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
4P LOSS CNV | 4 | 7 | 4 | 49 |
4P LOSS WILD-TYPE | 189 | 72 | 23 | 135 |
P value = 8.45e-05 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
4P LOSS CNV | 39 | 6 | 14 |
4P LOSS WILD-TYPE | 130 | 110 | 60 |
P value = 1.78e-06 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
4P LOSS CNV | 5 | 49 | 5 |
4P LOSS WILD-TYPE | 112 | 148 | 40 |
P value = 1.36e-26 (Chi-square test), Q value = 1.2e-23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
4Q LOSS CNV | 1 | 8 | 54 | 0 | 1 |
4Q LOSS WILD-TYPE | 289 | 32 | 85 | 17 | 5 |
P value = 2.15e-11 (Fisher's exact test), Q value = 1.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
4Q LOSS CNV | 39 | 16 | 2 |
4Q LOSS WILD-TYPE | 104 | 68 | 148 |
P value = 2.64e-08 (Fisher's exact test), Q value = 2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
4Q LOSS CNV | 27 | 0 | 5 |
4Q LOSS WILD-TYPE | 115 | 107 | 108 |
P value = 2.45e-08 (Fisher's exact test), Q value = 1.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
4Q LOSS CNV | 2 | 0 | 2 | 28 |
4Q LOSS WILD-TYPE | 63 | 92 | 63 | 112 |
P value = 1.04e-10 (Fisher's exact test), Q value = 8.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
4Q LOSS CNV | 51 | 6 | 5 |
4Q LOSS WILD-TYPE | 156 | 138 | 127 |
P value = 1.39e-10 (Fisher's exact test), Q value = 1.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
4Q LOSS CNV | 5 | 6 | 5 | 46 |
4Q LOSS WILD-TYPE | 188 | 73 | 22 | 138 |
P value = 0.000184 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
4Q LOSS CNV | 37 | 6 | 14 |
4Q LOSS WILD-TYPE | 132 | 110 | 60 |
P value = 4.68e-06 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
4Q LOSS CNV | 5 | 47 | 5 |
4Q LOSS WILD-TYPE | 112 | 150 | 40 |
P value = 1.16e-10 (Chi-square test), Q value = 9.1e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
5P LOSS CNV | 0 | 8 | 19 | 0 | 0 |
5P LOSS WILD-TYPE | 290 | 32 | 120 | 17 | 6 |
P value = 0.000323 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
5P LOSS CNV | 15 | 4 | 1 |
5P LOSS WILD-TYPE | 128 | 80 | 149 |
P value = 0.000216 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
5P LOSS CNV | 22 | 3 | 2 |
5P LOSS WILD-TYPE | 185 | 141 | 130 |
P value = 1.18e-18 (Chi-square test), Q value = 9.9e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
5Q LOSS CNV | 0 | 7 | 38 | 0 | 0 |
5Q LOSS WILD-TYPE | 290 | 33 | 101 | 17 | 6 |
P value = 7.92e-09 (Fisher's exact test), Q value = 6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
5Q LOSS CNV | 29 | 6 | 1 |
5Q LOSS WILD-TYPE | 114 | 78 | 149 |
P value = 6.28e-08 (Fisher's exact test), Q value = 4.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
5Q LOSS CNV | 25 | 1 | 2 |
5Q LOSS WILD-TYPE | 117 | 106 | 111 |
P value = 2.96e-08 (Fisher's exact test), Q value = 2.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
5Q LOSS CNV | 0 | 0 | 3 | 25 |
5Q LOSS WILD-TYPE | 65 | 92 | 62 | 115 |
P value = 2.83e-09 (Fisher's exact test), Q value = 2.2e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
5Q LOSS CNV | 38 | 4 | 2 |
5Q LOSS WILD-TYPE | 169 | 140 | 130 |
P value = 7.58e-08 (Fisher's exact test), Q value = 5.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
5Q LOSS CNV | 4 | 4 | 1 | 35 |
5Q LOSS WILD-TYPE | 189 | 75 | 26 | 149 |
P value = 0.000107 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
5Q LOSS CNV | 3 | 30 | 1 |
5Q LOSS WILD-TYPE | 114 | 167 | 44 |
P value = 0.000236 (Chi-square test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
6Q LOSS CNV | 0 | 3 | 9 | 0 | 0 |
6Q LOSS WILD-TYPE | 290 | 37 | 130 | 17 | 6 |
P value = 9.88e-10 (Chi-square test), Q value = 7.7e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
7P LOSS CNV | 3 | 1 | 24 | 0 | 1 |
7P LOSS WILD-TYPE | 287 | 39 | 115 | 17 | 5 |
P value = 0.000162 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
7P LOSS CNV | 18 | 2 | 2 |
7P LOSS WILD-TYPE | 124 | 105 | 111 |
P value = 2.27e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
7P LOSS CNV | 2 | 0 | 1 | 19 |
7P LOSS WILD-TYPE | 63 | 92 | 64 | 121 |
P value = 4.91e-14 (Chi-square test), Q value = 4e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
7Q LOSS CNV | 0 | 0 | 26 | 0 | 1 |
7Q LOSS WILD-TYPE | 290 | 40 | 113 | 17 | 5 |
P value = 0.000171 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
7Q LOSS CNV | 16 | 6 | 1 |
7Q LOSS WILD-TYPE | 127 | 78 | 149 |
P value = 1.32e-07 (Fisher's exact test), Q value = 9.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
7Q LOSS CNV | 17 | 0 | 0 |
7Q LOSS WILD-TYPE | 125 | 107 | 113 |
P value = 1.59e-06 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
7Q LOSS CNV | 0 | 0 | 0 | 17 |
7Q LOSS WILD-TYPE | 65 | 92 | 65 | 123 |
P value = 1.77e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
7Q LOSS CNV | 23 | 3 | 1 |
7Q LOSS WILD-TYPE | 184 | 141 | 131 |
P value = 1.25e-05 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
7Q LOSS CNV | 3 | 1 | 0 | 23 |
7Q LOSS WILD-TYPE | 190 | 78 | 27 | 161 |
P value = 4.01e-24 (Chi-square test), Q value = 3.4e-21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
8P LOSS CNV | 2 | 1 | 48 | 2 | 0 |
8P LOSS WILD-TYPE | 288 | 39 | 91 | 15 | 6 |
P value = 3.7e-11 (Fisher's exact test), Q value = 2.9e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
8P LOSS CNV | 36 | 9 | 1 |
8P LOSS WILD-TYPE | 107 | 75 | 149 |
P value = 4.84e-12 (Fisher's exact test), Q value = 3.9e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
8P LOSS CNV | 30 | 0 | 1 |
8P LOSS WILD-TYPE | 112 | 107 | 112 |
P value = 6.9e-10 (Fisher's exact test), Q value = 5.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
8P LOSS CNV | 1 | 0 | 1 | 29 |
8P LOSS WILD-TYPE | 64 | 92 | 64 | 111 |
P value = 4.01e-15 (Fisher's exact test), Q value = 3.3e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
8P LOSS CNV | 47 | 1 | 2 |
8P LOSS WILD-TYPE | 160 | 143 | 130 |
P value = 7.17e-17 (Fisher's exact test), Q value = 6e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
8P LOSS CNV | 1 | 2 | 0 | 47 |
8P LOSS WILD-TYPE | 192 | 77 | 27 | 137 |
P value = 9.38e-07 (Fisher's exact test), Q value = 0.00067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
8P LOSS CNV | 31 | 1 | 12 |
8P LOSS WILD-TYPE | 138 | 115 | 62 |
P value = 1.46e-07 (Fisher's exact test), Q value = 0.00011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
8P LOSS CNV | 1 | 39 | 4 |
8P LOSS WILD-TYPE | 116 | 158 | 41 |
P value = 2.23e-05 (Chi-square test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
8Q LOSS CNV | 0 | 0 | 11 | 1 | 0 |
8Q LOSS WILD-TYPE | 290 | 40 | 128 | 16 | 6 |
P value = 0.000302 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
8Q LOSS CNV | 11 | 0 | 0 |
8Q LOSS WILD-TYPE | 196 | 144 | 132 |
P value = 2.63e-29 (Chi-square test), Q value = 2.2e-26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
9P LOSS CNV | 2 | 11 | 61 | 2 | 0 |
9P LOSS WILD-TYPE | 288 | 29 | 78 | 15 | 6 |
P value = 1.81e-06 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
9P LOSS CNV | 36 | 19 | 8 |
9P LOSS WILD-TYPE | 107 | 65 | 142 |
P value = 2.12e-12 (Fisher's exact test), Q value = 1.7e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
9P LOSS CNV | 41 | 3 | 3 |
9P LOSS WILD-TYPE | 101 | 104 | 110 |
P value = 7.6e-15 (Fisher's exact test), Q value = 6.2e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
9P LOSS CNV | 0 | 1 | 3 | 43 |
9P LOSS WILD-TYPE | 65 | 91 | 62 | 97 |
P value = 1.37e-09 (Fisher's exact test), Q value = 1.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
9P LOSS CNV | 55 | 15 | 4 |
9P LOSS WILD-TYPE | 152 | 129 | 128 |
P value = 1.19e-08 (Fisher's exact test), Q value = 9e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
9P LOSS CNV | 14 | 4 | 4 | 52 |
9P LOSS WILD-TYPE | 179 | 75 | 23 | 132 |
P value = 4.17e-05 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 19 | 15 |
9Q LOSS CNV | 0 | 0 | 7 |
9Q LOSS WILD-TYPE | 19 | 19 | 8 |
P value = 1.53e-37 (Chi-square test), Q value = 1.3e-34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
9Q LOSS CNV | 3 | 13 | 75 | 1 | 1 |
9Q LOSS WILD-TYPE | 287 | 27 | 64 | 16 | 5 |
P value = 4.84e-07 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
9Q LOSS CNV | 46 | 21 | 12 |
9Q LOSS WILD-TYPE | 97 | 63 | 138 |
P value = 2.56e-13 (Fisher's exact test), Q value = 2.1e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
9Q LOSS CNV | 48 | 4 | 5 |
9Q LOSS WILD-TYPE | 94 | 103 | 108 |
P value = 2.82e-16 (Fisher's exact test), Q value = 2.3e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
9Q LOSS CNV | 0 | 2 | 5 | 50 |
9Q LOSS WILD-TYPE | 65 | 90 | 60 | 90 |
P value = 2.09e-12 (Fisher's exact test), Q value = 1.7e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
9Q LOSS CNV | 69 | 16 | 6 |
9Q LOSS WILD-TYPE | 138 | 128 | 126 |
P value = 3.83e-10 (Fisher's exact test), Q value = 3e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
9Q LOSS CNV | 15 | 8 | 6 | 62 |
9Q LOSS WILD-TYPE | 178 | 71 | 21 | 122 |
P value = 4e-11 (Chi-square test), Q value = 3.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
10P LOSS CNV | 0 | 1 | 22 | 0 | 0 |
10P LOSS WILD-TYPE | 290 | 39 | 117 | 17 | 6 |
P value = 0.000323 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
10P LOSS CNV | 15 | 4 | 1 |
10P LOSS WILD-TYPE | 128 | 80 | 149 |
P value = 1.25e-05 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
10P LOSS CNV | 20 | 1 | 1 |
10P LOSS WILD-TYPE | 187 | 143 | 131 |
P value = 2.94e-10 (Chi-square test), Q value = 2.3e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
10Q LOSS CNV | 1 | 1 | 22 | 0 | 0 |
10Q LOSS WILD-TYPE | 289 | 39 | 117 | 17 | 6 |
P value = 0.000161 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
10Q LOSS CNV | 16 | 5 | 1 |
10Q LOSS WILD-TYPE | 127 | 79 | 149 |
P value = 0.000214 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
10Q LOSS CNV | 20 | 2 | 2 |
10Q LOSS WILD-TYPE | 187 | 142 | 130 |
P value = 1.44e-21 (Chi-square test), Q value = 1.2e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
11P LOSS CNV | 1 | 4 | 45 | 1 | 2 |
11P LOSS WILD-TYPE | 289 | 36 | 94 | 16 | 4 |
P value = 8.9e-07 (Fisher's exact test), Q value = 0.00064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
11P LOSS CNV | 30 | 14 | 4 |
11P LOSS WILD-TYPE | 113 | 70 | 146 |
P value = 4.46e-08 (Fisher's exact test), Q value = 3.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
11P LOSS CNV | 24 | 0 | 3 |
11P LOSS WILD-TYPE | 118 | 107 | 110 |
P value = 2.6e-07 (Fisher's exact test), Q value = 0.00019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
11P LOSS CNV | 1 | 0 | 2 | 24 |
11P LOSS WILD-TYPE | 64 | 92 | 63 | 116 |
P value = 1.99e-08 (Fisher's exact test), Q value = 1.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
11P LOSS CNV | 42 | 7 | 3 |
11P LOSS WILD-TYPE | 165 | 137 | 129 |
P value = 1.99e-06 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
11P LOSS CNV | 7 | 5 | 3 | 37 |
11P LOSS WILD-TYPE | 186 | 74 | 24 | 147 |
P value = 1.15e-15 (Chi-square test), Q value = 9.5e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
11Q LOSS CNV | 1 | 6 | 35 | 1 | 2 |
11Q LOSS WILD-TYPE | 289 | 34 | 104 | 16 | 4 |
P value = 7.9e-05 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
11Q LOSS CNV | 26 | 12 | 5 |
11Q LOSS WILD-TYPE | 117 | 72 | 145 |
P value = 0.000397 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
11Q LOSS CNV | 17 | 2 | 2 |
11Q LOSS WILD-TYPE | 125 | 105 | 111 |
P value = 8.07e-06 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
11Q LOSS CNV | 1 | 0 | 1 | 19 |
11Q LOSS WILD-TYPE | 64 | 92 | 64 | 121 |
P value = 2.54e-06 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
11Q LOSS CNV | 35 | 7 | 3 |
11Q LOSS WILD-TYPE | 172 | 137 | 129 |
P value = 0.000184 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
11Q LOSS CNV | 8 | 4 | 2 | 31 |
11Q LOSS WILD-TYPE | 185 | 75 | 25 | 153 |
P value = 3.86e-11 (Chi-square test), Q value = 3.1e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
12P LOSS CNV | 0 | 2 | 23 | 0 | 0 |
12P LOSS WILD-TYPE | 290 | 38 | 116 | 17 | 6 |
P value = 0.000161 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
12P LOSS CNV | 16 | 5 | 1 |
12P LOSS WILD-TYPE | 127 | 79 | 149 |
P value = 3.62e-05 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
12P LOSS CNV | 12 | 0 | 0 |
12P LOSS WILD-TYPE | 130 | 107 | 113 |
P value = 9.52e-08 (Fisher's exact test), Q value = 7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
12P LOSS CNV | 23 | 1 | 0 |
12P LOSS WILD-TYPE | 184 | 143 | 132 |
P value = 4.34e-06 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
12P LOSS CNV | 1 | 1 | 1 | 21 |
12P LOSS WILD-TYPE | 192 | 78 | 26 | 163 |
P value = 0.000374 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
12P LOSS CNV | 1 | 20 | 0 |
12P LOSS WILD-TYPE | 116 | 177 | 45 |
P value = 1.23e-09 (Chi-square test), Q value = 9.5e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
12Q LOSS CNV | 0 | 0 | 18 | 0 | 0 |
12Q LOSS WILD-TYPE | 290 | 40 | 121 | 17 | 6 |
P value = 9.44e-05 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
12Q LOSS CNV | 13 | 3 | 0 |
12Q LOSS WILD-TYPE | 130 | 81 | 150 |
P value = 1.25e-06 (Fisher's exact test), Q value = 0.00089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
12Q LOSS CNV | 17 | 0 | 0 |
12Q LOSS WILD-TYPE | 190 | 144 | 132 |
P value = 1.67e-06 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
12Q LOSS CNV | 0 | 0 | 0 | 17 |
12Q LOSS WILD-TYPE | 193 | 79 | 27 | 167 |
P value = 2.43e-18 (Chi-square test), Q value = 2e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
13Q LOSS CNV | 5 | 15 | 39 | 0 | 1 |
13Q LOSS WILD-TYPE | 285 | 25 | 100 | 17 | 5 |
P value = 0.000107 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
13Q LOSS CNV | 31 | 14 | 8 |
13Q LOSS WILD-TYPE | 112 | 70 | 142 |
P value = 0.000395 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
13Q LOSS CNV | 23 | 3 | 6 |
13Q LOSS WILD-TYPE | 119 | 104 | 107 |
P value = 3.89e-06 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
13Q LOSS CNV | 3 | 1 | 2 | 26 |
13Q LOSS WILD-TYPE | 62 | 91 | 63 | 114 |
P value = 7.27e-05 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
13Q LOSS CNV | 41 | 10 | 8 |
13Q LOSS WILD-TYPE | 166 | 134 | 124 |
P value = 0.000188 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
13Q LOSS CNV | 11 | 7 | 6 | 35 |
13Q LOSS WILD-TYPE | 182 | 72 | 21 | 149 |
P value = 8.94e-17 (Chi-square test), Q value = 7.4e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
14Q LOSS CNV | 0 | 4 | 35 | 1 | 2 |
14Q LOSS WILD-TYPE | 290 | 36 | 104 | 16 | 4 |
P value = 1.06e-09 (Fisher's exact test), Q value = 8.2e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
14Q LOSS CNV | 27 | 5 | 0 |
14Q LOSS WILD-TYPE | 116 | 79 | 150 |
P value = 3.38e-08 (Fisher's exact test), Q value = 2.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
14Q LOSS CNV | 23 | 0 | 2 |
14Q LOSS WILD-TYPE | 119 | 107 | 111 |
P value = 1.95e-07 (Fisher's exact test), Q value = 0.00014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
14Q LOSS CNV | 1 | 0 | 1 | 23 |
14Q LOSS WILD-TYPE | 64 | 92 | 64 | 117 |
P value = 3.34e-09 (Fisher's exact test), Q value = 2.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
14Q LOSS CNV | 35 | 1 | 4 |
14Q LOSS WILD-TYPE | 172 | 143 | 128 |
P value = 9.82e-12 (Fisher's exact test), Q value = 7.9e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
14Q LOSS CNV | 0 | 4 | 1 | 35 |
14Q LOSS WILD-TYPE | 193 | 75 | 26 | 149 |
P value = 2.03e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
14Q LOSS CNV | 26 | 1 | 5 |
14Q LOSS WILD-TYPE | 143 | 115 | 69 |
P value = 4.89e-05 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
14Q LOSS CNV | 1 | 28 | 3 |
14Q LOSS WILD-TYPE | 116 | 169 | 42 |
P value = 0.000218 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 19 | 19 | 15 |
15Q LOSS CNV | 0 | 0 | 6 |
15Q LOSS WILD-TYPE | 19 | 19 | 9 |
P value = 4.68e-35 (Chi-square test), Q value = 4e-32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
15Q LOSS CNV | 1 | 10 | 67 | 0 | 3 |
15Q LOSS WILD-TYPE | 289 | 30 | 72 | 17 | 3 |
P value = 2.97e-13 (Fisher's exact test), Q value = 2.4e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
15Q LOSS CNV | 50 | 17 | 4 |
15Q LOSS WILD-TYPE | 93 | 67 | 146 |
P value = 7.92e-10 (Fisher's exact test), Q value = 6.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
15Q LOSS CNV | 36 | 2 | 5 |
15Q LOSS WILD-TYPE | 106 | 105 | 108 |
P value = 1.07e-10 (Fisher's exact test), Q value = 8.4e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
15Q LOSS CNV | 1 | 1 | 4 | 37 |
15Q LOSS WILD-TYPE | 64 | 91 | 61 | 103 |
P value = 5.22e-15 (Fisher's exact test), Q value = 4.3e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
15Q LOSS CNV | 66 | 7 | 6 |
15Q LOSS WILD-TYPE | 141 | 137 | 126 |
P value = 1.07e-16 (Fisher's exact test), Q value = 8.9e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
15Q LOSS CNV | 4 | 8 | 6 | 61 |
15Q LOSS WILD-TYPE | 189 | 71 | 21 | 123 |
P value = 1.05e-06 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
15Q LOSS CNV | 48 | 6 | 16 |
15Q LOSS WILD-TYPE | 121 | 110 | 58 |
P value = 3.04e-08 (Fisher's exact test), Q value = 2.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
15Q LOSS CNV | 5 | 58 | 7 |
15Q LOSS WILD-TYPE | 112 | 139 | 38 |
P value = 2.82e-31 (Chi-square test), Q value = 2.4e-28
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
16P LOSS CNV | 2 | 6 | 61 | 0 | 0 |
16P LOSS WILD-TYPE | 288 | 34 | 78 | 17 | 6 |
P value = 2.27e-09 (Fisher's exact test), Q value = 1.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
16P LOSS CNV | 38 | 17 | 4 |
16P LOSS WILD-TYPE | 105 | 67 | 146 |
P value = 7.52e-10 (Fisher's exact test), Q value = 5.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
16P LOSS CNV | 35 | 2 | 4 |
16P LOSS WILD-TYPE | 107 | 105 | 109 |
P value = 1.47e-09 (Fisher's exact test), Q value = 1.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
16P LOSS CNV | 3 | 1 | 2 | 35 |
16P LOSS WILD-TYPE | 62 | 91 | 63 | 105 |
P value = 1.47e-09 (Fisher's exact test), Q value = 1.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
16P LOSS CNV | 52 | 6 | 8 |
16P LOSS WILD-TYPE | 155 | 138 | 124 |
P value = 1.36e-10 (Fisher's exact test), Q value = 1.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
16P LOSS CNV | 6 | 7 | 4 | 49 |
16P LOSS WILD-TYPE | 187 | 72 | 23 | 135 |
P value = 2.56e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
16P LOSS CNV | 38 | 5 | 15 |
16P LOSS WILD-TYPE | 131 | 111 | 59 |
P value = 1.82e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
16P LOSS CNV | 6 | 47 | 5 |
16P LOSS WILD-TYPE | 111 | 150 | 40 |
P value = 5.94e-40 (Chi-square test), Q value = 5.1e-37
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
16Q LOSS CNV | 13 | 10 | 87 | 0 | 0 |
16Q LOSS WILD-TYPE | 277 | 30 | 52 | 17 | 6 |
P value = 2.1e-11 (Fisher's exact test), Q value = 1.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
16Q LOSS CNV | 58 | 25 | 11 |
16Q LOSS WILD-TYPE | 85 | 59 | 139 |
P value = 1.01e-11 (Fisher's exact test), Q value = 8.1e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
16Q LOSS CNV | 54 | 6 | 11 |
16Q LOSS WILD-TYPE | 88 | 101 | 102 |
P value = 2.34e-10 (Fisher's exact test), Q value = 1.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
16Q LOSS CNV | 9 | 4 | 6 | 52 |
16Q LOSS WILD-TYPE | 56 | 88 | 59 | 88 |
P value = 1.07e-11 (Fisher's exact test), Q value = 8.6e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
16Q LOSS CNV | 77 | 12 | 17 |
16Q LOSS WILD-TYPE | 130 | 132 | 115 |
P value = 1.9e-11 (Fisher's exact test), Q value = 1.5e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
16Q LOSS CNV | 18 | 11 | 5 | 72 |
16Q LOSS WILD-TYPE | 175 | 68 | 22 | 112 |
P value = 5.31e-06 (Fisher's exact test), Q value = 0.0037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
16Q LOSS CNV | 59 | 12 | 21 |
16Q LOSS WILD-TYPE | 110 | 104 | 53 |
P value = 6.9e-06 (Fisher's exact test), Q value = 0.0048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
16Q LOSS CNV | 13 | 69 | 10 |
16Q LOSS WILD-TYPE | 104 | 128 | 35 |
P value = 8.66e-53 (Chi-square test), Q value = 7.4e-50
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
17P LOSS CNV | 3 | 9 | 93 | 0 | 0 |
17P LOSS WILD-TYPE | 287 | 31 | 46 | 17 | 6 |
P value = 7.43e-13 (Fisher's exact test), Q value = 6e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
17P LOSS CNV | 61 | 18 | 10 |
17P LOSS WILD-TYPE | 82 | 66 | 140 |
P value = 1.6e-20 (Fisher's exact test), Q value = 1.3e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
17P LOSS CNV | 58 | 2 | 4 |
17P LOSS WILD-TYPE | 84 | 105 | 109 |
P value = 2.15e-21 (Fisher's exact test), Q value = 1.8e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
17P LOSS CNV | 1 | 0 | 5 | 58 |
17P LOSS WILD-TYPE | 64 | 92 | 60 | 82 |
P value = 4.87e-17 (Fisher's exact test), Q value = 4e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
17P LOSS CNV | 81 | 15 | 6 |
17P LOSS WILD-TYPE | 126 | 129 | 126 |
P value = 2.92e-15 (Fisher's exact test), Q value = 2.4e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
17P LOSS CNV | 15 | 7 | 5 | 75 |
17P LOSS WILD-TYPE | 178 | 72 | 22 | 109 |
P value = 2.51e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
17P LOSS CNV | 56 | 12 | 19 |
17P LOSS WILD-TYPE | 113 | 104 | 55 |
P value = 2.09e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
17P LOSS CNV | 12 | 64 | 11 |
17P LOSS WILD-TYPE | 105 | 133 | 34 |
P value = 1.48e-29 (Chi-square test), Q value = 1.3e-26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
17Q LOSS CNV | 1 | 9 | 58 | 0 | 0 |
17Q LOSS WILD-TYPE | 289 | 31 | 81 | 17 | 6 |
P value = 3.37e-05 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
17Q LOSS CNV | 35 | 14 | 9 |
17Q LOSS WILD-TYPE | 108 | 70 | 141 |
P value = 4.28e-09 (Fisher's exact test), Q value = 3.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
17Q LOSS CNV | 33 | 2 | 4 |
17Q LOSS WILD-TYPE | 109 | 105 | 109 |
P value = 1.95e-11 (Fisher's exact test), Q value = 1.6e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
17Q LOSS CNV | 1 | 0 | 3 | 35 |
17Q LOSS WILD-TYPE | 64 | 92 | 62 | 105 |
P value = 2.71e-07 (Fisher's exact test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
17Q LOSS CNV | 48 | 11 | 6 |
17Q LOSS WILD-TYPE | 159 | 133 | 126 |
P value = 5.5e-07 (Fisher's exact test), Q value = 4e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
17Q LOSS CNV | 11 | 5 | 5 | 44 |
17Q LOSS WILD-TYPE | 182 | 74 | 22 | 140 |
P value = 3.15e-12 (Chi-square test), Q value = 2.5e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
18P LOSS CNV | 1 | 9 | 25 | 0 | 1 |
18P LOSS WILD-TYPE | 289 | 31 | 114 | 17 | 5 |
P value = 1.88e-05 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
18P LOSS CNV | 22 | 6 | 2 |
18P LOSS WILD-TYPE | 121 | 78 | 148 |
P value = 0.000172 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
18P LOSS CNV | 1 | 0 | 4 | 17 |
18P LOSS WILD-TYPE | 64 | 92 | 61 | 123 |
P value = 9.75e-18 (Chi-square test), Q value = 8.1e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
18Q LOSS CNV | 1 | 9 | 38 | 0 | 1 |
18Q LOSS WILD-TYPE | 289 | 31 | 101 | 17 | 5 |
P value = 1.92e-06 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
18Q LOSS CNV | 30 | 10 | 4 |
18Q LOSS WILD-TYPE | 113 | 74 | 146 |
P value = 3.87e-06 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
18Q LOSS CNV | 23 | 1 | 4 |
18Q LOSS WILD-TYPE | 119 | 106 | 109 |
P value = 5.65e-07 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
18Q LOSS CNV | 1 | 0 | 3 | 24 |
18Q LOSS WILD-TYPE | 64 | 92 | 62 | 116 |
P value = 3.04e-06 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
18Q LOSS CNV | 37 | 5 | 6 |
18Q LOSS WILD-TYPE | 170 | 139 | 126 |
P value = 2.59e-07 (Fisher's exact test), Q value = 0.00019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
18Q LOSS CNV | 4 | 6 | 6 | 32 |
18Q LOSS WILD-TYPE | 189 | 73 | 21 | 152 |
P value = 4.63e-12 (Chi-square test), Q value = 3.7e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
19P LOSS CNV | 0 | 7 | 26 | 1 | 0 |
19P LOSS WILD-TYPE | 290 | 33 | 113 | 16 | 6 |
P value = 9.19e-08 (Fisher's exact test), Q value = 6.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
19P LOSS CNV | 25 | 4 | 1 |
19P LOSS WILD-TYPE | 118 | 80 | 149 |
P value = 1.84e-05 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
19P LOSS CNV | 16 | 0 | 2 |
19P LOSS WILD-TYPE | 126 | 107 | 111 |
P value = 7.84e-06 (Fisher's exact test), Q value = 0.0054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
19P LOSS CNV | 1 | 0 | 0 | 17 |
19P LOSS WILD-TYPE | 64 | 92 | 65 | 123 |
P value = 1.01e-05 (Fisher's exact test), Q value = 0.007
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
19P LOSS CNV | 27 | 2 | 4 |
19P LOSS WILD-TYPE | 180 | 142 | 128 |
P value = 6.41e-07 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
19P LOSS CNV | 1 | 4 | 3 | 25 |
19P LOSS WILD-TYPE | 192 | 75 | 24 | 159 |
P value = 8.18e-06 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
19P LOSS CNV | 26 | 1 | 3 |
19P LOSS WILD-TYPE | 143 | 115 | 71 |
P value = 1.79e-08 (Chi-square test), Q value = 1.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
19Q LOSS CNV | 1 | 6 | 20 | 1 | 0 |
19Q LOSS WILD-TYPE | 289 | 34 | 119 | 16 | 6 |
P value = 5.03e-05 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
19Q LOSS CNV | 18 | 5 | 1 |
19Q LOSS WILD-TYPE | 125 | 79 | 149 |
P value = 1.46e-05 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
19Q LOSS CNV | 1 | 3 | 3 | 20 |
19Q LOSS WILD-TYPE | 192 | 76 | 24 | 164 |
P value = 0.000124 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
19Q LOSS CNV | 21 | 1 | 2 |
19Q LOSS WILD-TYPE | 148 | 115 | 72 |
P value = 0.000122 (Chi-square test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
20P LOSS CNV | 1 | 2 | 12 | 0 | 0 |
20P LOSS WILD-TYPE | 289 | 38 | 127 | 17 | 6 |
P value = 6.47e-08 (Chi-square test), Q value = 4.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
21Q LOSS CNV | 3 | 4 | 23 | 1 | 1 |
21Q LOSS WILD-TYPE | 287 | 36 | 116 | 16 | 5 |
P value = 0.000148 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
21Q LOSS CNV | 15 | 0 | 3 |
21Q LOSS WILD-TYPE | 127 | 107 | 110 |
P value = 4.43e-05 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
21Q LOSS CNV | 2 | 7 | 0 | 21 |
21Q LOSS WILD-TYPE | 191 | 72 | 27 | 163 |
P value = 0.00022 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 169 | 116 | 74 |
21Q LOSS CNV | 21 | 1 | 3 |
21Q LOSS WILD-TYPE | 148 | 115 | 71 |
P value = 0.000203 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 117 | 197 | 45 |
21Q LOSS CNV | 1 | 23 | 1 |
21Q LOSS WILD-TYPE | 116 | 174 | 44 |
P value = 1.41e-36 (Chi-square test), Q value = 1.2e-33
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
22Q LOSS CNV | 1 | 13 | 71 | 1 | 1 |
22Q LOSS WILD-TYPE | 289 | 27 | 68 | 16 | 5 |
P value = 3.23e-08 (Fisher's exact test), Q value = 2.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 84 | 150 |
22Q LOSS CNV | 46 | 22 | 10 |
22Q LOSS WILD-TYPE | 97 | 62 | 140 |
P value = 4.88e-11 (Fisher's exact test), Q value = 3.9e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
22Q LOSS CNV | 41 | 3 | 5 |
22Q LOSS WILD-TYPE | 101 | 104 | 108 |
P value = 3.29e-14 (Fisher's exact test), Q value = 2.7e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
22Q LOSS CNV | 1 | 1 | 3 | 44 |
22Q LOSS WILD-TYPE | 64 | 91 | 62 | 96 |
P value = 9.64e-11 (Fisher's exact test), Q value = 7.6e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
22Q LOSS CNV | 64 | 14 | 7 |
22Q LOSS WILD-TYPE | 143 | 130 | 125 |
P value = 1.01e-09 (Fisher's exact test), Q value = 7.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
22Q LOSS CNV | 13 | 8 | 6 | 58 |
22Q LOSS WILD-TYPE | 180 | 71 | 21 | 126 |
P value = 2.97e-07 (Chi-square test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
XQ LOSS CNV | 0 | 1 | 16 | 1 | 0 |
XQ LOSS WILD-TYPE | 290 | 39 | 123 | 16 | 6 |
P value = 0.000233 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 207 | 144 | 132 |
XQ LOSS CNV | 16 | 1 | 1 |
XQ LOSS WILD-TYPE | 191 | 143 | 131 |
P value = 2.27e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 193 | 79 | 27 | 184 |
XQ LOSS CNV | 0 | 1 | 1 | 16 |
XQ LOSS WILD-TYPE | 193 | 78 | 26 | 168 |
-
Mutation data file = broad_values_by_arm.mutsig.cluster.txt
-
Molecular subtypes file = UCEC-TP.transferedmergedcluster.txt
-
Number of patients = 492
-
Number of significantly arm-level cnvs = 79
-
Number of molecular subtypes = 12
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
This is an experimental feature. The full results of the analysis summarized in this report can be downloaded from the TCGA Data Coordination Center.