Broad GDAC Analyses Status
analyses__2013_09_23__esca Run for Tumor Type: ESCA

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
ESCA73196315630001200

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Gene_Status00010
2TP-Aggregate_Molecular_Subtype_Clusters00010
3TP-CoMut1.510000
4TP-CoMut2.010000
5TP-CoMutCV10000
6TP-CoMutMerged10000
7TP-CopyNumberLowPass_Gistic200010
8TP-CopyNumber_Clustering_CNMF00010
9TP-CopyNumber_Gistic200010
10TP-CopyNumber_Gistic2_Postprocess_Focal00010
11TP-Correlate_Clinical_vs_CopyNumber_Arm00010
12TP-Correlate_Clinical_vs_CopyNumber_Focal00010
13TP-Correlate_Clinical_vs_Methylation10000
14TP-Correlate_Clinical_vs_miR10000
15TP-Correlate_Clinical_vs_miRseq10000
16TP-Correlate_Clinical_vs_Molecular_Subtypes00010
17TP-Correlate_Clinical_vs_mRNA10000
18TP-Correlate_Clinical_vs_mRNAseq10000
19TP-Correlate_Clinical_vs_Mutation10000
20TP-Correlate_Clinical_vs_RPPA10000
21TP-Correlate_CopyNumber_vs_miR10000
22TP-Correlate_CopyNumber_vs_mRNA10000
23TP-Correlate_CopyNumber_vs_mRNAseq10000
24TP-Correlate_Methylation_vs_mRNA10000
25TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
26TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
27TP-Correlate_molecularSubtype_vs_Mutation10000
28TP-GenerateStickFigures1.510000
29TP-GenerateStickFigures2.010000
30TP-GenerateStickFiguresCV10000
31TP-GenerateStickFiguresMerged10000
32TP-LegoPlotter1.510000
33TP-LegoPlotter2.010000
34TP-LegoPlotterCV10000
35TP-LegoPlotterMerged10000
36TP-MergeMutSigRunResults10000
37TP-Methylation_Clustering_CNMF00010
38TP-Methylation_Preprocess00010
39TP-miRseq_Clustering_CNMF10000
40TP-miRseq_Clustering_Consensus10000
41TP-miRseq_Mature_Clustering_CNMF10000
42TP-miRseq_Mature_Clustering_Consensus10000
43TP-miRseq_Mature_Preprocess00010
44TP-miRseq_Preprocess00010
45TP-miR_Clustering_CNMF10000
46TP-miR_Clustering_Consensus10000
47TP-miR_FindDirectTargets10000
48TP-mRNAseq_Clustering_CNMF10000
49TP-mRNAseq_Clustering_Consensus10000
50TP-mRNA_Clustering_CNMF10000
51TP-mRNA_Clustering_Consensus10000
52TP-mRNA_Preprocess_Median10000
53TP-Mutation_Assessor10000
54TP-Mutation_CHASM10000
55TP-MutSigNozzleReport1.510000
56TP-MutSigNozzleReport2.010000
57TP-MutSigNozzleReportCV10000
58TP-MutSigNozzleReportMerged10000
59TP-MutSigPreprocess1.510000
60TP-MutSigPreprocess2.010000
61TP-MutSigRun1.510000
62TP-MutSigRun2.010000
63TP-MutSigRunCV10000
64TP-ParadigmPreprocess_mRNA10000
65TP-ParadigmPreprocess_RNASeq10000
66TP-Paradigm_mRNA10000
67TP-Paradigm_mRNA_And_CopyNumber10000
68TP-Paradigm_Prepare_mRNA10000
69TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
70TP-Paradigm_Prepare_RNASeq10000
71TP-Paradigm_Prepare_RNASeq_And_Copy_Number10000
72TP-Paradigm_Preprocess_mRNA10000
73TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
74TP-Paradigm_Preprocess_RNASeq10000
75TP-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
76TP-Paradigm_Report_Preprocess_mRNA10000
77TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
78TP-Paradigm_Report_Preprocess_RNASeq10000
79TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
80TP-Paradigm_RNASeq10000
81TP-Paradigm_RNASeq_And_Copy_Number10000
82TP-Pathway_FindEnrichedGenes10000
83TP-Pathway_Hotnet10000
84TP-Pathway_Paradigm_mRNA10000
85TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
86TP-Pathway_Paradigm_RNASeq10000
87TP-Pathway_Paradigm_RNASeq_And_Copy_Number10000
88TP-ProcessCoverageForMutSig1.510000
89TP-ProcessCoverageForMutSig2.010000
90TP-RPPA_Clustering_CNMF10000
91TP-RPPA_Clustering_Consensus10000
Total7600150

This table generated on Mon Oct 28 11:02:50 2013