Broad GDAC Analyses Status
analyses__2013_09_23__thca Run for Tumor Type: THCA

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
THCA4964774949549604820495222402

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PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Gene_Status00010
2TP-Aggregate_Molecular_Subtype_Clusters00010
3TP-CoMut1.500010
4TP-CoMut2.000010
5TP-CoMutCV00010
6TP-CoMutMerged00010
7TP-CopyNumberLowPass_Gistic200010
8TP-CopyNumber_Clustering_CNMF00010
9TP-CopyNumber_Gistic200010
10TP-CopyNumber_Gistic2_Postprocess_Focal00010
11TP-Correlate_Clinical_vs_CopyNumber_Arm00010
12TP-Correlate_Clinical_vs_CopyNumber_Focal00010
13TP-Correlate_Clinical_vs_Methylation00010
14TP-Correlate_Clinical_vs_miR10000
15TP-Correlate_Clinical_vs_miRseq00010
16TP-Correlate_Clinical_vs_Molecular_Subtypes00010
17TP-Correlate_Clinical_vs_mRNA10000
18TP-Correlate_Clinical_vs_mRNAseq00010
19TP-Correlate_Clinical_vs_Mutation00010
20TP-Correlate_Clinical_vs_RPPA00010
21TP-Correlate_CopyNumber_vs_miR10000
22TP-Correlate_CopyNumber_vs_mRNA10000
23TP-Correlate_CopyNumber_vs_mRNAseq00010
24TP-Correlate_Methylation_vs_mRNA00010
25TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
26TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
27TP-Correlate_molecularSubtype_vs_Mutation00010
28TP-GenerateStickFigures1.500010
29TP-GenerateStickFigures2.000010
30TP-GenerateStickFiguresCV00010
31TP-GenerateStickFiguresMerged00010
32TP-LegoPlotter1.500010
33TP-LegoPlotter2.000010
34TP-LegoPlotterCV00010
35TP-LegoPlotterMerged00010
36TP-MergeMutSigRunResults00010
37TP-Methylation_Clustering_CNMF00010
38TP-Methylation_Preprocess00010
39TP-miRseq_Clustering_CNMF00010
40TP-miRseq_Clustering_Consensus00010
41TP-miRseq_Mature_Clustering_CNMF00010
42TP-miRseq_Mature_Clustering_Consensus00010
43TP-miRseq_Mature_Preprocess00010
44TP-miRseq_Preprocess00010
45TP-miR_Clustering_CNMF10000
46TP-miR_Clustering_Consensus10000
47TP-miR_FindDirectTargets10000
48TP-mRNAseq_Clustering_CNMF00010
49TP-mRNAseq_Clustering_Consensus00010
50TP-mRNA_Clustering_CNMF10000
51TP-mRNA_Clustering_Consensus10000
52TP-mRNA_Preprocess_Median10000
53TP-Mutation_Assessor00010
54TP-Mutation_CHASM00010
55TP-MutSigNozzleReport1.500010
56TP-MutSigNozzleReport2.000010
57TP-MutSigNozzleReportCV00010
58TP-MutSigNozzleReportMerged00010
59TP-MutSigPreprocess1.500010
60TP-MutSigPreprocess2.000010
61TP-MutSigRun1.500010
62TP-MutSigRun2.000010
63TP-MutSigRunCV00010
64TP-ParadigmPreprocess_mRNA10000
65TP-ParadigmPreprocess_RNASeq00010
66TP-Paradigm_mRNA10000
67TP-Paradigm_mRNA_And_CopyNumber10000
68TP-Paradigm_Prepare_mRNA10000
69TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
70TP-Paradigm_Prepare_RNASeq00010
71TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
72TP-Paradigm_Preprocess_mRNA10000
73TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
74TP-Paradigm_Preprocess_RNASeq00010
75TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
76TP-Paradigm_Report_Preprocess_mRNA10000
77TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
78TP-Paradigm_Report_Preprocess_RNASeq00010
79TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
80TP-Paradigm_RNASeq00010
81TP-Paradigm_RNASeq_And_Copy_Number00010
82TP-Pathway_FindEnrichedGenes10000
83TP-Pathway_Hotnet00010
84TP-Pathway_Paradigm_mRNA10000
85TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
86TP-Pathway_Paradigm_RNASeq00010
87TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
88TP-ProcessCoverageForMutSig1.500010
89TP-ProcessCoverageForMutSig2.000010
90TP-RPPA_Clustering_CNMF00010
91TP-RPPA_Clustering_Consensus00010
Total2200690

This table generated on Mon Oct 28 11:02:56 2013