Broad GDAC analyses__2013_09_23_

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
UCS	57	15	56	0	57	0	56	0	56	0	0

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	Pipeline	NotRunnable	Successful
1	TP-Aggregate_Gene_Status	0	1
2	TP-Aggregate_Molecular_Subtype_Clusters	0	1
3	TP-CoMut1.5	1	0
4	TP-CoMut2.0	1	0
5	TP-CoMutCV	1	0
6	TP-CoMutMerged	1	0
7	TP-CopyNumberLowPass_Gistic2	1	0
8	TP-CopyNumber_Clustering_CNMF	0	1
9	TP-CopyNumber_Gistic2	0	1
10	TP-CopyNumber_Gistic2_Postprocess_Focal	0	1
11	TP-Correlate_Clinical_vs_CopyNumber_Arm	0	1
12	TP-Correlate_Clinical_vs_CopyNumber_Focal	0	1
13	TP-Correlate_Clinical_vs_Methylation	0	1
14	TP-Correlate_Clinical_vs_miR	1	0
15	TP-Correlate_Clinical_vs_miRseq	0	1
16	TP-Correlate_Clinical_vs_Molecular_Subtypes	0	1
17	TP-Correlate_Clinical_vs_mRNA	1	0
18	TP-Correlate_Clinical_vs_mRNAseq	0	1
19	TP-Correlate_Clinical_vs_Mutation	1	0
20	TP-Correlate_Clinical_vs_RPPA	1	0
21	TP-Correlate_CopyNumber_vs_miR	1	0
22	TP-Correlate_CopyNumber_vs_mRNA	1	0
23	TP-Correlate_CopyNumber_vs_mRNAseq	0	1
24	TP-Correlate_Methylation_vs_mRNA	0	1
25	TP-Correlate_molecularSubtype_vs_CopyNumber_Arm	0	1
26	TP-Correlate_molecularSubtype_vs_CopyNumber_Focal	0	1
27	TP-Correlate_molecularSubtype_vs_Mutation	1	0
28	TP-GenerateStickFigures1.5	1	0
29	TP-GenerateStickFigures2.0	1	0
30	TP-GenerateStickFiguresCV	1	0
31	TP-GenerateStickFiguresMerged	1	0
32	TP-LegoPlotter1.5	1	0
33	TP-LegoPlotter2.0	1	0
34	TP-LegoPlotterCV	1	0
35	TP-LegoPlotterMerged	1	0
36	TP-MergeMutSigRunResults	1	0
37	TP-Methylation_Clustering_CNMF	0	1
38	TP-Methylation_Preprocess	0	1
39	TP-miRseq_Clustering_CNMF	0	1
40	TP-miRseq_Clustering_Consensus	0	1
41	TP-miRseq_Mature_Clustering_CNMF	0	1
42	TP-miRseq_Mature_Clustering_Consensus	0	1
43	TP-miRseq_Mature_Preprocess	0	1
44	TP-miRseq_Preprocess	0	1
45	TP-miR_Clustering_CNMF	1	0
46	TP-miR_Clustering_Consensus	1	0
47	TP-miR_FindDirectTargets	1	0
48	TP-mRNAseq_Clustering_CNMF	0	1
49	TP-mRNAseq_Clustering_Consensus	0	1
50	TP-mRNA_Clustering_CNMF	1	0
51	TP-mRNA_Clustering_Consensus	1	0
52	TP-mRNA_Preprocess_Median	1	0
53	TP-Mutation_Assessor	1	0
54	TP-Mutation_CHASM	1	0
55	TP-MutSigNozzleReport1.5	1	0
56	TP-MutSigNozzleReport2.0	1	0
57	TP-MutSigNozzleReportCV	1	0
58	TP-MutSigNozzleReportMerged	1	0
59	TP-MutSigPreprocess1.5	1	0
60	TP-MutSigPreprocess2.0	1	0
61	TP-MutSigRun1.5	1	0
62	TP-MutSigRun2.0	1	0
63	TP-MutSigRunCV	1	0
64	TP-ParadigmPreprocess_mRNA	1	0
65	TP-ParadigmPreprocess_RNASeq	0	1
66	TP-Paradigm_mRNA	1	0
67	TP-Paradigm_mRNA_And_CopyNumber	1	0
68	TP-Paradigm_Prepare_mRNA	1	0
69	TP-Paradigm_Prepare_mRNA_And_Copy_Number	1	0
70	TP-Paradigm_Prepare_RNASeq	0	1
71	TP-Paradigm_Prepare_RNASeq_And_Copy_Number	0	1
72	TP-Paradigm_Preprocess_mRNA	1	0
73	TP-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0
74	TP-Paradigm_Preprocess_RNASeq	0	1
75	TP-Paradigm_Preprocess_RNASeq_And_Copy_Number	0	1
76	TP-Paradigm_Report_Preprocess_mRNA	1	0
77	TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0
78	TP-Paradigm_Report_Preprocess_RNASeq	0	1
79	TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	0	1
80	TP-Paradigm_RNASeq	0	1
81	TP-Paradigm_RNASeq_And_Copy_Number	0	1
82	TP-Pathway_FindEnrichedGenes	1	0
83	TP-Pathway_Hotnet	1	0
84	TP-Pathway_Paradigm_mRNA	1	0
85	TP-Pathway_Paradigm_mRNA_And_Copy_Number	1	0
86	TP-Pathway_Paradigm_RNASeq	0	1
87	TP-Pathway_Paradigm_RNASeq_And_Copy_Number	0	1
88	TP-ProcessCoverageForMutSig1.5	1	0
89	TP-ProcessCoverageForMutSig2.0	1	0
90	TP-RPPA_Clustering_CNMF	1	0
91	TP-RPPA_Clustering_Consensus	1	0
	Total	55	36

This table generated on Mon Oct 28 11:02:57 2013

Broad GDAC Analyses Status analyses__2013_09_23__ucs Run for Tumor Type: UCS

Broad GDAC Analyses Status
analyses__2013_09_23__ucs Run for Tumor Type: UCS