Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-OR-A5J1-01A-11D-A29H-01	TCGA-OR-A5J2-01A-11D-A29H-01	TCGA-OR-A5J3-01A-11D-A29H-01	TCGA-OR-A5J4-01A-11D-A29H-01	TCGA-OR-A5J5-01A-11D-A29H-01	TCGA-OR-A5J6-01A-31D-A29H-01	TCGA-OR-A5J7-01A-11D-A29H-01	TCGA-OR-A5J8-01A-11D-A29H-01	TCGA-OR-A5J9-01A-11D-A29H-01	TCGA-OR-A5JA-01A-11D-A29H-01	TCGA-OR-A5JB-01A-11D-A29H-01	TCGA-OR-A5JC-01A-11D-A29H-01	TCGA-OR-A5JD-01A-11D-A29H-01	TCGA-OR-A5JE-01A-11D-A29H-01	TCGA-OR-A5JF-01A-11D-A29H-01	TCGA-OR-A5JG-01A-11D-A29H-01	TCGA-OR-A5JI-01A-11D-A29H-01	TCGA-OR-A5JJ-01A-11D-A29H-01	TCGA-OR-A5JK-01A-11D-A29H-01	TCGA-OR-A5JL-01A-11D-A29H-01	TCGA-OR-A5JM-01A-11D-A29H-01	TCGA-OR-A5JO-01A-11D-A29H-01	TCGA-OR-A5JP-01A-11D-A29H-01	TCGA-OR-A5JQ-01A-11D-A29H-01	TCGA-OR-A5JR-01A-11D-A29H-01	TCGA-OR-A5JS-01A-11D-A29H-01	TCGA-OR-A5JT-01A-11D-A29H-01	TCGA-OR-A5JV-01A-11D-A29H-01	TCGA-OR-A5JW-01A-11D-A29H-01	TCGA-OR-A5JX-01A-11D-A29H-01	TCGA-OR-A5JY-01A-31D-A29H-01	TCGA-OR-A5JZ-01A-11D-A29H-01	TCGA-OR-A5K0-01A-11D-A29H-01	TCGA-OR-A5K1-01A-11D-A29H-01	TCGA-OR-A5K2-01A-11D-A29H-01	TCGA-OR-A5K3-01A-11D-A29H-01	TCGA-OR-A5K4-01A-11D-A29H-01	TCGA-OR-A5K5-01A-11D-A29H-01	TCGA-OR-A5K6-01A-11D-A29H-01	TCGA-OR-A5K8-01A-11D-A29H-01	TCGA-OR-A5K9-01A-11D-A29H-01	TCGA-OR-A5KO-01A-11D-A29H-01	TCGA-OR-A5KT-01A-11D-A29H-01	TCGA-OR-A5KU-01A-11D-A29H-01	TCGA-OR-A5KV-01A-11D-A29H-01	TCGA-OR-A5KW-01A-11D-A29H-01	TCGA-OR-A5KX-01A-11D-A29H-01	TCGA-OR-A5KY-01A-11D-A29H-01	TCGA-OR-A5KZ-01A-11D-A29H-01	TCGA-OR-A5L3-01A-11D-A29H-01	TCGA-OR-A5L4-01A-11D-A29H-01	TCGA-OR-A5L5-01A-11D-A29H-01	TCGA-OR-A5L6-01A-11D-A29H-01	TCGA-OR-A5L8-01A-11D-A29H-01	TCGA-OR-A5L9-01A-11D-A29H-01	TCGA-OR-A5LA-01A-11D-A29H-01	TCGA-OR-A5LB-01A-11D-A29H-01	TCGA-OR-A5LC-01A-11D-A29H-01	TCGA-OR-A5LD-01A-11D-A29H-01	TCGA-OR-A5LE-01A-11D-A29H-01	TCGA-OR-A5LG-01A-11D-A29H-01	TCGA-OR-A5LH-01A-11D-A29H-01	TCGA-OR-A5LJ-01A-11D-A29H-01	TCGA-OR-A5LK-01A-11D-A29H-01	TCGA-OR-A5LL-01A-11D-A29H-01	TCGA-OR-A5LM-01A-11D-A29H-01	TCGA-OR-A5LN-01A-11D-A29H-01	TCGA-OR-A5LO-01A-11D-A29H-01	TCGA-OR-A5LP-01A-11D-A29H-01	TCGA-OR-A5LR-01A-11D-A29H-01	TCGA-OR-A5LT-01A-11D-A29H-01	TCGA-OU-A5PI-01A-12D-A29H-01	TCGA-P6-A5OG-01A-22D-A29H-01	TCGA-PA-A5YG-01A-11D-A29H-01	TCGA-PK-A5H9-01A-11D-A29H-01	TCGA-PK-A5HA-01A-11D-A29H-01	TCGA-PK-A5HB-01A-11D-A29H-01	
Amplification Peak  1	1q22    	chr1:153665611-155302817(probes 69616:70366)    	chr1:155024310-155083455(probes 70258:70272)    	chr1:155024310-155095653(probes 70258:70275)    	0.10298	    0.10298		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	2	0	0	0	0	1	0	0	0	2	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	
Amplification Peak  2	4p16.3  	chr4:1-2703856(probes 366973:367553)                	chr4:1778802-1816689(probes 367196:367205)          	chr4:1-2709194(probes 366973:367555)                	0.03803	    0.03803		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	0	1	2	0	0	0	2	1	0	1	0	0	2	0	1	2	1	2	0	0	1	1	2	0	2	1	0	0	0	0	0	0	0	2	2	1	0	2	0	2	1	2	0	2	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	2	0	2	1	2	1	0	0	0	2	2	0	0	0	0	0	
Amplification Peak  3	4q35.1  	chr4:143364465-191154276(probes 445610:469764)  	chr4:184438693-184450707(probes 467837:467843)  	chr4:183535153-191154276(probes 467710:469764)  	0.092928	   0.092928		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	2	0	0	0	1	0	0	1	0	0	0	0	1	0	1	2	0	0	0	1	2	0	2	1	0	0	0	2	0	0	0	0	2	0	0	2	0	2	0	2	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	2	0	2	1	2	1	2	0	0	2	2	0	0	0	0	0	
Amplification Peak  4	5p15.33 	chr5:1-1287702(probes 469765:469815)                 	chr5:1-1287539(probes 469765:469814)                 	chr5:1-1350010(probes 469765:469836)                 	6.8562e-08	 6.8562e-08		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	2	1	2	1	1	1	2	1	0	2	1	1	2	2	1	2	2	2	0	0	0	1	2	0	2	1	2	0	2	2	0	2	2	2	2	1	0	2	2	2	0	2	0	2	2	0	1	0	2	2	2	2	2	2	2	2	0	0	2	2	2	2	2	2	1	2	2	2	2	2	0	2	0	0	0	
Amplification Peak  5	5q35.3  	chr5:176723780-176833588(probes 568660:568708)  	chr5:176797344-176832557(probes 568696:568707)  	chr5:155245849-180915260(probes 554926:570304)  	0.003988	   0.003988		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	2	1	2	1	1	0	1	1	0	2	0	1	2	2	1	2	1	2	0	0	0	1	2	2	2	1	1	2	0	2	0	2	0	2	2	1	0	2	0	2	0	2	0	2	0	1	0	0	2	2	2	2	2	2	2	0	0	0	0	2	2	2	1	2	1	2	2	2	2	2	1	2	0	2	0	
Amplification Peak  6	6q24.3  	chr6:147060843-148023227(probes 652641:653247)  	chr6:147570724-147597369(probes 652967:652978)  	chr6:147570724-147605981(probes 652967:652981)  	0.12011	    0.12011		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	1	0	1	0	1	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	2	0	2	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0	0	1	0	
Amplification Peak  7	9q34.3  	chr9:107993933-141213431(probes 877476:897825)  	chr9:139367458-139544835(probes 897429:897470)  	chr9:139367458-139552460(probes 897429:897473)  	0.21604	    0.21604		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	2	2	0	1	1	1	1	0	0	0	1	2	2	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	2	0	2	0	0	0	0	2	2	1	0	0	0	0	0	0	0	2	1	0	1	0	0	2	0	0	0	0	1	0	0	2	2	0	0	0	1	0	
Amplification Peak  8	12q14.1 	chr12:58080141-58481453(probes 1085615:1085829)  	chr12:58105108-58168417(probes 1085623:1085656)  	chr12:57678571-60459369(probes 1085432:1087184)  	0.017519	   0.017519		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	2	1	2	1	1	1	2	2	0	2	0	1	2	2	1	2	1	2	2	0	1	1	2	0	2	1	0	1	2	2	0	2	1	2	2	2	0	2	2	0	2	2	0	2	2	2	2	0	2	2	2	1	2	2	2	0	2	0	0	2	2	2	0	2	1	2	2	2	2	2	0	2	0	2	0	
Amplification Peak  9	14q11.2 	chr14:21010467-23970250(probes 1186972:1187853)  	chr14:23575826-23616783(probes 1187673:1187702)  	chr14:21011105-23973042(probes 1186973:1187855)  	0.048573	   0.048573		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	2	1	2	0	0	0	2	2	0	2	0	1	0	1	0	2	0	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	2	2	0	0	0	2	0	0	2	0	0	2	0	0	0	0	0	0	0	0	1	0	2	0	0	0	2	0	0	0	0	0	
Amplification Peak 10	16q22.1 	chr16:69246837-69648494(probes 1308889:1309071)  	chr16:69383137-69466215(probes 1308945:1308979)  	chr16:69246837-69695588(probes 1308889:1309095)  	0.027999	   0.027999		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	2	2	2	0	0	0	1	1	0	1	0	1	2	1	1	2	1	0	0	0	1	1	2	0	2	1	0	1	0	2	0	2	0	2	2	0	0	2	0	2	0	1	0	2	2	1	1	0	2	2	2	1	2	2	0	0	2	0	2	0	0	0	1	2	0	1	2	2	1	2	1	2	0	0	0	
Amplification Peak 11	17q25.3 	chr17:54329365-81195210(probes 1344679:1358478)  	chr17:80321662-80356996(probes 1358158:1358162)  	chr17:80321662-80366813(probes 1358158:1358165)  	0.20678	    0.20678		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	2	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	
Amplification Peak 12	19p13.12	chr19:15293986-16620503(probes 1406727:1407444)  	chr19:15376833-15595142(probes 1406783:1406886)  	chr19:15294002-16905526(probes 1406728:1407556)  	0.017914	   0.017914		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	2	2	2	1	1	0	2	2	0	2	0	1	2	2	1	2	1	0	1	0	1	1	1	0	0	1	0	1	0	0	1	0	1	2	1	2	0	2	2	2	0	2	0	2	2	1	2	0	2	0	0	2	0	0	2	0	2	0	0	1	2	2	1	2	1	2	2	0	2	2	0	2	0	0	0	
Amplification Peak 13	19q12   	chr19:30126537-30551696(probes 1411644:1411929)  	chr19:30306821-30376514(probes 1411762:1411819)  	chr19:30211394-30555840(probes 1411684:1411931)  	0.15543	    0.20715		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	1	2	2	2	1	1	0	2	2	0	2	0	1	2	2	1	2	1	0	2	0	1	1	1	0	0	1	0	1	0	0	0	0	1	2	1	1	0	2	1	2	0	2	0	0	2	2	2	0	2	0	0	2	0	0	2	0	1	0	0	1	2	2	1	2	0	2	2	0	2	2	0	2	0	0	0	
Amplification Peak 14	19q13.33	chr19:37264335-59128983(probes 1416107:1425119)  	chr19:50271925-50286992(probes 1421609:1421616)  	chr19:49922997-50592246(probes 1421503:1421651)  	0.089479	       0.13		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	2	2	2	1	1	0	2	2	0	2	0	2	2	2	1	2	1	0	1	0	1	1	1	0	2	1	0	1	0	0	0	0	1	2	1	1	0	2	1	2	0	2	0	2	2	2	2	0	2	0	0	2	2	0	2	0	1	0	0	1	2	2	0	2	0	2	2	0	2	2	0	2	0	0	0	
Amplification Peak 15	Xq28    	chrX:151841230-152714951(probes 1563369:1563381)	chrX:151843350-152713671(probes 1563370:1563380)	chrX:151843350-152720475(probes 1563370:1563383)	0.099184	   0.099184		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	1	0	1	1	0	0	1	1	0	1	0	1	1	0	0	1	1	1	0	0	0	0	1	0	1	1	0	0	2	1	0	1	0	1	1	2	0	1	0	2	0	1	0	0	2	2	1	0	1	1	0	1	2	1	1	0	1	0	0	1	1	1	0	1	0	1	1	1	1	1	0	1	0	0	2	
Deletion Peak  1	1p36.23 	chr1:8403012-8925111(probes 3187:3448)              	chr1:8403015-8489425(probes 3188:3213)                	chr1:1-12153396(probes 1:4949)                       	7.7138e-05	 7.7138e-05		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	1	0	0	0	0	1	0	0	1	1	1	0	0	1	1	1	0	1	0	1	1	0	1	0	1	1	1	1	0	0	0	1	0	0	1	1	0	1	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	1	1	0	0	0	1	0	0	0	0	1	0	
Deletion Peak  2	1q24.1  	chr1:163290474-225979711(probes 75273:115293)   	chr1:167021550-167062901(probes 78135:78160)      	chr1:167046141-167049689(probes 78148:78149)      	0.23173	    0.23173		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  3	2q37.3  	chr2:230133788-243199373(probes 253484:260545)  	chr2:240878347-240885808(probes 259689:259690)    	chr2:240297703-241422969(probes 259315:260049)    	0.04871	   0.051599		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	1	1	0	1	1	0	0	0	0	0	1	1	0	0	0	1	0	1	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	
Deletion Peak  4	3q13.31 	chr3:115440285-116429324(probes 323354:324020)  	chr3:115518592-116166389(probes 323390:323860)    	chr3:115826774-116670892(probes 323588:324254)    	0.001897	    0.01311		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	1	1	0	1	0	1	0	0	0	1	0	0	1	1	0	0	1	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	
Deletion Peak  5	3q13.31 	chr3:115440285-118620828(probes 323354:325588)  	chr3:116426639-116440933(probes 324020:324027)    	chr3:115826774-116670892(probes 323588:324254)    	0.018337	    0.18763		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	
Deletion Peak  6	4q34.3  	chr4:178911874-183060693(probes 465217:467345)  	chr4:181521852-182082855(probes 466555:466558)    	chr4:181525132-191154276(probes 466556:469764)    	1.3432e-08	 3.6294e-05		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	1	0	0	1	0	1	0	0	1	0	0	0	1	0	0	0	1	1	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	
Deletion Peak  7	4q35.1  	chr4:183089198-184213557(probes 467371:467710)  	chr4:183239900-184213557(probes 467505:467710)    	chr4:181525132-191154276(probes 466556:469764)    	1.5972e-15	 1.4078e-11		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	1	1	0	1	0	0	0	0	1	0	1	0	1	0	0	1	0	0	0	1	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	
Deletion Peak  8	6p25.2  	chr6:1-21599699(probes 570305:584752)              	chr6:3257168-3464985(probes 571993:572116)            	chr6:3337787-3340344(probes 572055:572056)            	0.16784	     0.1602		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  9	6q26    	chr6:88753800-171115067(probes 618827:666836)    	chr6:163758942-163841899(probes 663520:663577)    	chr6:162035077-164048563(probes 662666:663688)    	0.061686	   0.061686		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	1	0	0	1	0	0	0	0	1	0	1	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	
Deletion Peak 10	7q32.3  	chr7:95210837-159138663(probes 715227:748194)    	chr7:130565698-130599863(probes 733282:733314)    	chr7:130579163-130580342(probes 733299:733300)    	0.061686	   0.061686		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 11	9p23    	chr9:3824005-26894302(probes 831780:846208)        	chr9:8310705-10619051(probes 834318:835651)          	chr9:9216369-9219832(probes 834985:834986)            	0.037028	    0.12548		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	0	1	0	1	0	1	0	0	1	0	1	0	0	1	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	
Deletion Peak 12	9p21.3  	chr9:21865498-21997722(probes 843212:843276)      	chr9:21959052-21997722(probes 843263:843276)        	chr9:20635116-33234764(probes 842339:849855)        	1.3823e-06	 1.3782e-05		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	0	1	0	1	0	1	0	0	1	1	0	0	0	1	0	1	0	1	0	0	1	1	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	
Deletion Peak 13	10q26.3 	chr10:134118510-135534747(probes 978462:978729)	chr10:134898067-135206872(probes 978631:978723)  	chr10:134868594-135206872(probes 978630:978723)  	0.15194	     0.1466		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 14	11p15.5 	chr11:1681026-1944201(probes 979108:979130)        	chr11:1681228-1920254(probes 979109:979124)          	chr11:1608435-1928556(probes 979057:979126)          	0.0052259	  0.0052259		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	1	1	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	1	
Deletion Peak 15	11q24.3 	chr11:1-135006516(probes 978730:1056009)          	chr11:128703437-128815336(probes 1052667:1052758)	chr11:128672475-128817475(probes 1052636:1052764)	0.2463	     0.2463		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	1	1	0	1	1	0	0	1	1	0	0	0	0	0	1	1	0	1	0	0	1	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	1	
Deletion Peak 16	12q14.2 	chr12:56315051-92536825(probes 1084804:1106470)  	chr12:63538123-63547647(probes 1089086:1089095)    	chr12:63537413-63592577(probes 1089084:1089112)    	0.12548	    0.12548		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 17	13q14.2 	chr13:48833767-49064807(probes 1148581:1148832)  	chr13:48875753-49060837(probes 1148604:1148830)    	chr13:48898172-49075112(probes 1148634:1148841)    	0.00038834	 0.00038834		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	1	0	0	1	1	1	1	1	0	1	1	0	1	0	0	0	1	1	0	1	0	0	1	0	1	0	1	0	1	0	0	1	0	0	1	1	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	1	1	
Deletion Peak 18	16p13.3 	chr16:5144019-8620694(probes 1282339:1284394)      	chr16:6066397-7771745(probes 1282976:1283835)        	chr16:7369731-7376241(probes 1283406:1283407)        	0.12548	    0.12548		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	
Deletion Peak 19	16q23.1 	chr16:1-90354753(probes 1280673:1321479)           	chr16:78129058-79247026(probes 1313893:1314905)    	chr16:78583258-78586506(probes 1314400:1314401)    	0.2463	     0.2463		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 20	17q11.2 	chr17:29704122-29888119(probes 1332988:1333071)  	chr17:29858465-29872630(probes 1333064:1333065)    	chr17:29851236-29883766(probes 1333057:1333069)    	0.058258	   0.058258		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	1	1	1	0	0	0	1	0	0	1	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	
Deletion Peak 21	17q21.31	chr17:26570940-53405607(probes 1331760:1343951)  	chr17:41098755-42281281(probes 1338236:1338830)    	chr17:36926182-43018065(probes 1336287:1339140)    	0.02022	   0.067724		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	1	0	0	1	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	1	1	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	1	
Deletion Peak 22	17q24.2 	chr17:66185305-66865465(probes 1351029:1351489)  	chr17:66505806-66558846(probes 1351218:1351243)    	chr17:66225358-67805453(probes 1351046:1352057)    	0.011389	   0.016815		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	1	0	0	1	0	0	1	0	1	0	0	0	1	0	0	1	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	
Deletion Peak 23	22q12.1 	chr22:29192671-29455701(probes 1487329:1487508)  	chr22:29276121-29455701(probes 1487378:1487508)    	chr22:29022089-29624466(probes 1487254:1487605)    	4.5487e-22	 4.5487e-22		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	0	0	1	1	1	1	1	1	1	1	1	0	1	1	0	1	0	0	0	1	1	1	0	0	1	1	1	1	0	0	0	1	0	0	1	0	0	1	1	0	0	0	0	1	1	1	0	0	0	1	0	0	0	1	1	0	1	1	0	0	0	1	1	1	1	0	0	1	0	1	0	1	1	0	
Amplification Peak  1 - CN values	1q22    	chr1:153665611-155302817(probes 69616:70366)    	chr1:155024310-155083455(probes 70258:70272)    	chr1:155024310-155095653(probes 70258:70275)    	0.10298	    0.10298		Actual Copy Change Given	1.7568	1.134	-0.01775	-0.056173	-0.026577	-0.034416	0.34275	0.027497	-0.011611	0.00041593	1.1681	-0.22662	-0.78387	0.59667	-0.022203	0.015038	-0.44541	-0.013402	0.40461	-0.069561	0.0072217	-0.0010307	-0.0029091	-0.55497	-0.030677	0.081033	-0.0094046	0.42519	-0.79853	-0.60184	0.0038854	0	0.90835	0.0081959	0.048546	0	-0.001734	1.5995	0.028163	-0.020072	0.5989	-0.0066432	0.029168	-0.037671	-0.00069303	-0.078752	0.1076	-0.017215	-0.033541	0.0114	-0.014228	-0.0011882	-0.47665	-0.028355	0	-0.0012123	-0.067993	0.049966	-0.0011087	1.0386	-0.00055444	-0.016879	0	-0.050235	3.6569	-0.46972	-0.017666	-0.013127	-0.0018014	-0.00055444	-0.068495	-0.040616	0.32366	-0.0048461	0.0038854	0.066086	0.013696	
Amplification Peak  2 - CN values	4p16.3  	chr4:1-2703856(probes 366973:367553)                	chr4:1778802-1816689(probes 367196:367205)          	chr4:1-2709194(probes 366973:367555)                	0.03803	    0.03803		Actual Copy Change Given	1.0638	-0.027535	-0.0048331	0.67345	1.7464	-0.041159	-0.042788	0.020063	2.2126	0.44698	-0.6523	0.35692	0.034395	-0.12777	1.3014	-0.00933	0.47251	2.5209	0.87169	0.93189	-0.0076101	-0.00013862	0.48802	0.25981	1.2316	-0.42276	1.8466	0.75048	0.014051	0.010842	-0.35874	-0.016096	-0.0011137	-0.013264	-0.13122	2.7306	1.5006	0.53344	-0.010311	1.6283	0.020063	1.7756	0.12327	1.7915	0	1.6089	-0.01106	-0.046438	-0.41047	0.022444	-0.019452	-0.010649	0.013554	-0.060076	-0.014348	1.0683	1.7837	-0.49141	-0.0036938	-0.017116	0	1.4721	-0.04155	1.2141	0.10906	3.6569	0.4996	-0.058193	-0.077611	0	2.8249	1.6695	-0.010396	0.0061606	-0.00055444	-0.41893	0.030591	
Amplification Peak  3 - CN values	4q35.1  	chr4:143364465-191154276(probes 445610:469764)  	chr4:184438693-184450707(probes 467837:467843)  	chr4:183535153-191154276(probes 467710:469764)  	0.092928	   0.092928		Actual Copy Change Given	-0.0095426	0.0016642	0.020678	-0.098418	1.7916	-0.048478	-0.55397	-0.07067	0.73929	0.069669	-0.67518	0.41346	0.043865	-0.010839	-0.073884	-0.014494	0.44787	-0.030253	0.48733	0.93189	-0.58432	-0.00013862	-0.11848	0.23442	1.2032	-1.2929	1.5963	0.7783	0.031295	0.023005	-0.91394	1.9296	0	-0.013264	-0.535	0.0070826	1.5006	-0.040073	-0.008379	1.4665	0.032422	1.6025	0.0091544	1.7078	0	-0.1192	-0.017116	-0.04048	0.73739	-0.019452	0.0093644	0.0024969	-0.0012455	-0.060076	0.010982	1.0683	-0.12525	-0.49319	-0.017116	-1.0595	0.035665	1.3035	-0.03749	1.0011	0.10906	1.0806	0.55213	1.6739	0.017395	0	0.9011	1.4887	0.03003	0.019363	-0.0084385	-0.45286	-0.85401	
Amplification Peak  4 - CN values	5p15.33 	chr5:1-1287702(probes 469765:469815)                 	chr5:1-1287539(probes 469765:469814)                 	chr5:1-1350010(probes 469765:469836)                 	6.8562e-08	 6.8562e-08		Actual Copy Change Given	1.9313	-0.14708	1.1428	0.74746	1.7572	0.48699	0.65259	0.63984	2.4266	0.83294	0.06208	1.5729	0.15906	0.47608	1.364	1.06	0.47543	1.4762	0.93345	1.0252	-0.65836	-0.0061465	0.034395	0.32479	1.2506	0.0044411	1.9058	0.86433	1.3746	0.024689	1.6764	3.1748	0.010982	1.3596	1.1022	1.467	1.5188	0.5252	0	2.9259	1.6843	3.5312	0.052651	1.7947	-0.01715	1.724	3.6569	-0.016567	0.83903	-0.009173	1.7953	1.1628	1.4092	1.8193	1.4512	1.1096	1.9101	3.4604	-0.0024938	0.0080567	0.93203	1.4967	1.5712	1.4091	2.4481	2.8179	0.52159	1.6281	1.1908	1.5746	3.6569	1.598	0.087433	1.1595	-0.0033243	0.066086	0.059191	
Amplification Peak  5 - CN values	5q35.3  	chr5:176723780-176833588(probes 568660:568708)  	chr5:176797344-176832557(probes 568696:568707)  	chr5:155245849-180915260(probes 554926:570304)  	0.003988	   0.003988		Actual Copy Change Given	0.88206	-0.012024	1.0946	0.69933	1.7761	0.48699	0.53538	-0.1299	0.74975	0.62606	-0.00027724	1.4639	0.050677	0.47086	1.341	1.0401	0.47543	1.4534	0.89969	1.0252	0.0036486	0.0018367	-0.02151	0.32318	1.296	3.1067	1.6279	0.74975	0.78504	1.1561	0.033267	1.7205	0.010006	1.3596	0.040892	1.467	3.1451	0.55089	0.022084	2.9688	0.004719	1.7337	0.058207	2.759	0.0038063	1.6801	0.0054139	0.74347	-0.019675	0	1.7953	1.1628	1.4439	1.8193	1.4512	1.1056	1.8832	0.062937	-0.01904	0.012376	0.0072217	1.4371	1.6336	1.4846	0.89387	2.5536	0.55407	1.6518	1.1912	1.6065	1.7546	3.3473	0.12962	1.0859	-0.0033243	2.0245	0.046133	
Amplification Peak  6 - CN values	6q24.3  	chr6:147060843-148023227(probes 652641:653247)  	chr6:147570724-147597369(probes 652967:652978)  	chr6:147570724-147605981(probes 652967:652981)  	0.12011	    0.12011		Actual Copy Change Given	-0.010646	-0.026304	0.020398	-0.061152	-0.066141	1.0462	-0.54411	0.89969	-0.056981	0.72565	-0.65668	0.58399	-0.78966	0.49763	-0.054646	-0.32239	0.0046878	-0.0024938	-0.16764	0.9867	0.004719	0.00027728	-0.0042929	-0.56833	-0.087712	-0.24569	-0.04983	-0.098491	0.027497	-0.012586	-0.41849	0.0016642	0.94364	-0.0089906	2.5977	0.027216	-0.020275	-0.043691	-0.012378	1.4762	-0.0026322	3.6569	-0.010524	-0.048928	0.00055459	-0.11503	-0.0069195	0.0019418	1.0658	-0.0040959	0.89192	0	0.01523	-0.059	-0.0013858	-0.043161	-0.067056	-1.0073	-0.00027724	0.010595	-0.88349	-0.067056	-0.038986	1.0759	-0.11339	0.29915	0.52083	-0.060883	-0.0033243	0.00013863	-0.072808	-0.091702	-0.29544	0	-0.00036515	0.65737	0.024268	
Amplification Peak  7 - CN values	9q34.3  	chr9:107993933-141213431(probes 877476:897825)  	chr9:139367458-139544835(probes 897429:897470)  	chr9:139367458-139552460(probes 897429:897473)  	0.21604	    0.21604		Actual Copy Change Given	0.018103	0.018103	-0.027783	2.4552	1.7654	0	0.69297	0.10804	0.73872	0.73853	0.02739	-0.18961	0.035164	0.75753	1.3168	0.98185	0.0092785	2.5028	-0.16523	0.0032316	0.016146	-0.0049351	-0.5899	0	0.0019418	0.036229	0.069812	0.44935	0.043299	0.059651	-0.16688	-0.025893	-0.059807	0.011539	0.69129	-0.021149	0.039761	-0.0095426	0.032765	1.5279	0.049682	1.8715	0.024813	-0.039302	-0.00055444	-0.091626	1.7303	1.3778	0.27584	0.020343	-0.01717	0.008892	0.019285	-0.033269	-0.01037	-0.01928	1.8076	0.12889	0.00013863	0.12358	0.047694	0.02001	1.5232	-0.024935	0.09101	-0.40882	0.013911	0.81396	-0.019008	-0.011611	1.6966	1.6434	-0.15042	-0.022195	0.0037465	0.10716	-0.017529	
Amplification Peak  8 - CN values	12q14.1 	chr12:58080141-58481453(probes 1085615:1085829)  	chr12:58105108-58168417(probes 1085623:1085656)  	chr12:57678571-60459369(probes 1085432:1087184)  	0.017519	   0.017519		Actual Copy Change Given	-0.0020784	1.3143	1.1172	0.64965	1.7776	0.49704	0.5962	0.49654	1.4544	1.0451	-0.4867	0.95693	0.041317	0.46629	1.2934	1.0966	0.45526	1.4016	0.8689	1.0159	3.6569	0	0.50307	0.31994	1.2893	0.063707	1.6422	0.75185	0.010006	0.57006	2.1835	1.6889	-0.0098185	1.3222	0.52888	1.425	1.5513	1.0597	0.0036675	1.5115	3.5362	-0.060284	2.3008	1.7471	0.001803	1.6091	1.4974	1.2941	1.0497	0.0041632	1.7159	1.1394	1.1894	0.87627	1.4142	1.1137	1.8333	0.036935	2.2246	0.015518	-0.0033243	1.4448	1.5093	1.1303	-0.40886	1.8185	0.53222	1.5975	1.1223	1.5418	1.7982	1.5712	-0.092081	1.108	-0.0019507	0.97626	0.0040243	
Amplification Peak  9 - CN values	14q11.2 	chr14:21010467-23970250(probes 1186972:1187853)  	chr14:23575826-23616783(probes 1187673:1187702)  	chr14:21011105-23973042(probes 1186973:1187855)  	0.048573	   0.048573		Actual Copy Change Given	-0.0034627	0.0040243	1.4047	0.71999	1.8132	-0.55407	-0.58677	-0.15643	2.299	1.035	0.026654	0.95591	-0.7916	0.47849	-0.026585	0.4927	0.0050334	1.4261	-0.15464	1.1399	0.5822	-0.00027724	0.53872	-0.55907	-0.074144	0.085365	-0.0030475	-0.07214	0.0024969	0.00083195	0.067805	-0.010646	-0.0040162	-0.0060904	-0.056307	-0.0070576	-0.0027707	-0.62131	0.0079775	1.6148	0.016425	1.882	0.011244	-0.039982	-0.0041546	3.092	1.0007	-0.023018	-0.31751	0.019363	1.6591	-0.0046609	-0.27003	1.7945	-0.00055444	-0.028347	1.8225	-0.48165	-0.0062286	0.025812	0.012516	-0.034631	-0.016461	-0.04618	0.098664	0.46684	-0.57447	1.597	-0.010508	-0.0092666	-0.10039	3.4309	-0.10211	-0.0077482	0	-0.20012	0.015447	
Amplification Peak 10 - CN values	16q22.1 	chr16:69246837-69648494(probes 1308889:1309071)  	chr16:69383137-69466215(probes 1308945:1308979)  	chr16:69246837-69695588(probes 1308889:1309095)  	0.027999	   0.027999		Actual Copy Change Given	0.026701	0.0065262	1.3653	2.8743	1.7683	-0.07401	-0.020549	-0.085457	0.766	0.79419	0.017824	0.47263	0.018292	0.4883	1.3051	0.78834	0.49472	1.3143	0.82177	-0.0092263	0.034113	-0.0016629	0.52171	0.2719	1.4198	0.07096	1.7231	0.39263	0.024969	0.61498	-0.28715	1.4663	-1.0076	1.3214	-0.091153	1.379	1.6098	0.031155	0.033046	1.5502	0.034254	1.7355	0.025164	0.80202	-0.0083005	2.6873	0.96535	0.55939	0.58148	0.028161	1.7146	1.1375	1.0486	0.8412	1.3887	1.1537	-0.11247	0.053806	3.6569	0.012795	1.4416	0.055373	-0.015879	0	0.10278	1.0733	0.020623	0.78929	1.0356	1.5232	0.80636	3.1949	0.87966	1.0979	0.0063871	0.024548	-0.87229	
Amplification Peak 11 - CN values	17q25.3 	chr17:54329365-81195210(probes 1344679:1358478)  	chr17:80321662-80356996(probes 1358158:1358162)  	chr17:80321662-80366813(probes 1358158:1358165)  	0.20678	    0.20678		Actual Copy Change Given	0.67808	0	-0.083679	-0.074173	-0.030813	0.00041593	-0.60535	0.18632	-0.021921	-0.31716	-0.042245	-0.19325	0.046133	-0.029502	-0.028772	-0.38626	0.02564	-0.079476	-0.1508	0	0.39479	-0.0031859	0.40744	0.31562	0.036653	-0.90495	0.076566	-0.011787	-0.80629	0.0070826	0.18692	-0.028369	-0.03245	0.015866	-0.056173	-0.059135	0.043995	0.51407	2.5841	-0.0011087	-0.58225	0.0065262	0.039744	1.6996	-0.018628	-0.063913	1.0625	-0.15093	-0.081605	0.047552	-0.075878	0.013632	-0.21423	-0.024573	-0.0073339	0.082801	-0.099868	-0.47215	0.69762	-1.0365	-0.8467	0.084955	-0.0077482	0.010564	-0.056132	-0.45404	0.059223	0.73	-0.053881	0.0015255	1.5875	-0.026577	-0.09261	-0.038034	0.023847	0.041175	-0.94056	
Amplification Peak 12 - CN values	19p13.12	chr19:15293986-16620503(probes 1406727:1407444)  	chr19:15376833-15595142(probes 1406783:1406886)  	chr19:15294002-16905526(probes 1406728:1407556)  	0.017914	   0.017914		Actual Copy Change Given	0.02539	0.11272	1.3197	1.3952	1.7371	0.5088	0.49963	-0.092213	1.4716	0.97894	-0.70046	0.99488	0	0.42093	1.26	0.96871	0.46874	1.2219	0.79549	0.070032	0.85462	-0.005261	0.75662	0.24731	0.7012	0.019643	0.071765	0.51786	0.00013863	0.54242	0.0086135	0.023987	0.71415	0.038489	0.30393	1.24	0.10045	1.6228	0.029526	1.565	3.1191	1.8704	0.045975	1.5761	-0.006505	1.5864	3.6569	0.4777	1.1162	0.067661	1.4902	0.020623	-0.036451	1.7521	0.011281	0.078907	1.6917	0.024548	3.6569	0.069095	0.016146	0.11503	2.9143	1.2299	0.24626	1.0896	0.57398	1.6238	0.98204	0.017404	1.6238	3.1245	-0.09089	0.96617	0.020763	0.057796	-0.095648	
Amplification Peak 13 - CN values	19q12   	chr19:30126537-30551696(probes 1411644:1411929)  	chr19:30306821-30376514(probes 1411762:1411819)  	chr19:30211394-30555840(probes 1411684:1411931)  	0.15543	    0.20715		Actual Copy Change Given	1.2275	0.11272	1.3197	3.6569	1.7371	0.5088	0.49963	-0.092213	1.4716	0.97894	-0.066788	0.99488	0	0.42093	1.26	0.96871	0.46874	1.2219	0.79549	0.070032	1.0825	-0.005261	0.83079	0.24731	0.7012	0.019643	0.071765	0.51786	0.00013863	0.54242	0.0086135	-0.020909	-0.083333	-0.029124	0.30393	1.24	0.10045	0.5865	0.029526	1.565	0.5546	1.8704	-0.65025	1.5761	-0.006505	-0.088051	3.6569	3.0326	1.1162	0.067661	1.4902	0.020623	0.03095	1.7521	0.011281	0.078907	1.6917	0.024548	0.62479	0.033003	0.016146	0.11503	1.5489	1.2299	0.25527	1.0896	0	1.6238	0.98204	0.017404	1.6238	1.5433	-0.09089	0.96617	-0.069519	0.057796	-0.095648	
Amplification Peak 14 - CN values	19q13.33	chr19:37264335-59128983(probes 1416107:1425119)  	chr19:50271925-50286992(probes 1421609:1421616)  	chr19:49922997-50592246(probes 1421503:1421651)  	0.089479	       0.13		Actual Copy Change Given	-0.92279	0.11272	1.3681	1.4634	1.7371	0.5088	0.49082	-0.092213	1.4716	0.97894	-0.066788	0.99488	0	1.9046	1.2939	0.95346	0.46874	1.2219	0.79549	0.075889	0.4863	-0.005261	0.79684	0.24731	0.7012	0.019643	0.98659	0.45387	0.00013863	0.54242	0.0086135	-0.020909	-0.083333	0.031718	0.39662	1.24	0.10045	0.57148	0.029526	1.565	0.5546	1.9258	-0.62542	1.5761	-0.006505	3.6569	1.0544	1.6646	1.1162	0.056798	1.4902	0.020623	0.037704	1.7521	1.4646	0.078907	1.7164	0.024548	0.62479	0.033003	0.016146	0.13214	1.5489	1.2299	-0.40196	1.071	0	1.5601	0.98204	0.017404	1.5712	1.5613	-0.09089	0.99904	-0.069519	0.057796	-0.11391	
Amplification Peak 15 - CN values	Xq28    	chrX:151841230-152714951(probes 1563369:1563381)	chrX:151843350-152713671(probes 1563370:1563380)	chrX:151843350-152720475(probes 1563370:1563383)	0.099184	   0.099184		Actual Copy Change Given	-0.024128	0.39048	0.25799	-0.051991	0.51682	0.10468	-0.28406	-0.19878	0.31577	0.12853	-0.17513	0.16398	-0.37865	0.1222	0.41864	0.065935	-0.043205	0.4863	0.28059	0.31567	-0.037218	0	-0.0015243	-0.20697	0.35912	-0.23557	0.35202	0.24856	-0.36982	-0.031086	1.4519	0.23457	-0.87244	0.30186	-0.073476	0.29676	0.35545	1.2734	-0.13388	0.61244	-0.14872	1.068	-0.0073499	0.44641	-0.050235	-0.20642	1.215	1.4945	0.1639	-0.035176	0.40594	0.19938	-0.057998	0.42652	2.1759	0.32935	0.62989	-0.29969	0.1598	-0.18735	-0.10132	0.27363	0.50307	0.83847	-0.154	0.15188	-0.025886	0.42772	0.22916	0.28137	0.51475	0.70457	0.042024	0.23444	-0.00069303	0.045708	1.8079	
Deletion Peak  1 - CN values	1p36.23 	chr1:8403012-8925111(probes 3187:3448)              	chr1:8403015-8489425(probes 3188:3213)                	chr1:1-12153396(probes 1:4949)                       	7.7138e-05	 7.7138e-05		Actual Copy Change Given	0.028622	-0.7388	-0.063716	-0.91912	-0.026577	-0.0099565	-0.0832	-0.0078863	-0.85639	0.033972	0.63499	-0.16853	-0.78387	-0.54838	-0.028294	-0.058207	-0.42082	-0.11245	-0.15541	-0.069561	-0.56065	0.00097064	-0.59847	-0.55497	0.070673	-0.85837	0.053948	-0.44911	-0.79853	-0.58088	-0.33387	-0.030813	-0.045635	0.0081959	-0.61162	-0.07458	0.069382	-0.60806	-0.92567	-0.020072	-0.5797	-0.024774	0.029168	-0.037671	-0.00069303	-0.078752	-0.44458	-0.0091286	-0.096713	-0.84363	-0.014228	0.00041593	-0.47665	-0.028355	-0.0019678	-0.0012123	-0.067993	-1.2929	-0.0011087	0.031295	-0.84771	0.034113	0	0.042166	0.42267	-0.44037	-0.57021	-0.038696	-0.0018014	-0.00055444	-0.14976	-0.040616	0.23845	-0.0048461	0.011958	-0.81359	-0.05752	
Deletion Peak  2 - CN values	1q24.1  	chr1:163290474-225979711(probes 75273:115293)   	chr1:167021550-167062901(probes 78135:78160)      	chr1:167046141-167049689(probes 78148:78149)      	0.23173	    0.23173		Actual Copy Change Given	0.73057	1.134	-0.01775	-0.056173	-0.026577	-0.034416	0.023426	0.027497	-0.011611	0	0.0075	-0.22645	-0.78387	0.59667	-0.035456	0.015038	-0.44541	-0.013402	0.40461	-0.069561	0.0072217	-0.0010307	-0.0029091	-0.55497	-0.030677	0.081033	-0.0094046	0.34101	-0.79853	-0.60184	0.0038854	0	-0.97849	0.0081959	0.048546	0	-0.001734	0.55191	0.028163	-0.020072	0.5989	-0.013781	0.029168	-0.037671	-0.00069303	-0.078752	0.062508	-0.017215	-0.033541	0.0114	-0.014228	-0.0011882	-0.47665	-0.028355	0	-0.0012123	-0.067993	0.049966	-0.0011087	-0.90381	-0.00055444	-0.016879	0	-0.050235	0.75566	-0.46972	-0.017666	-0.013127	-0.0018014	-0.00055444	0.022725	-0.040616	0.32366	-0.0048461	0.0038854	0.015028	0.013696	
Deletion Peak  3 - CN values	2q37.3  	chr2:230133788-243199373(probes 253484:260545)  	chr2:240878347-240885808(probes 259689:259690)    	chr2:240297703-241422969(probes 259315:260049)    	0.04871	   0.051599		Actual Copy Change Given	0.0081959	0.012516	0.010758	-0.95876	0	0.46746	-0.0056757	1.1357	-0.84026	-0.27786	0	-0.15042	-0.75132	0.47832	0	-0.021992	-0.076175	0.036935	-0.11142	-0.10319	-0.027124	0.0034687	0.080601	-0.52634	-0.043059	-0.3622	0.012046	-0.056712	-0.7645	-0.56431	0.46673	0.0025512	-1.0086	0.017404	0.019363	-0.011459	0.011818	0.55691	-0.0059841	0	0.0091705	-0.023566	-0.0011248	0.010378	0.00069327	0.011489	1.0005	0.019083	-0.041567	-0.0095426	0.031999	0.018803	0.003878	0	0.023005	0.060401	-0.94474	-0.85273	0.65719	-0.018765	0.015447	0.012097	0.026795	-0.021921	0.022585	0.061508	-0.55109	0.022725	0.026642	0.015308	0	0	-0.027875	0.023566	0.0018784	-0.81433	0.01447	
Deletion Peak  4 - CN values	3q13.31 	chr3:115440285-116429324(probes 323354:324020)  	chr3:115518592-116166389(probes 323390:323860)    	chr3:115826774-116670892(probes 323588:324254)    	0.001897	    0.01311		Actual Copy Change Given	-0.0030475	1.2461	0.0017187	0.64286	-0.05442	-0.57507	-0.51476	-0.17974	-0.03817	-0.3393	0.041741	-0.7436	0.0428	-0.0026877	-0.043473	-0.3058	0	-0.0023553	-0.68387	-0.14139	-0.0014452	0.00041593	-0.52187	0.31221	0.61648	0	-0.040209	0.33254	-0.80421	-0.00053083	-0.98492	0.01462	-0.97644	-0.0018014	0.022024	-0.0016629	-0.021647	0.52573	-0.021999	-0.054555	-1.2112	-0.12643	0.00012257	-0.034676	0.0033299	-0.10717	-0.01106	0	0.016006	-0.015329	-0.0047079	0.0034687	-0.39614	0.87089	0.0020097	-0.031017	-0.037325	-0.48575	-0.0033022	-1.0359	0.0027745	-0.094138	1.5379	1.0616	-0.42517	-0.49925	-0.054466	-0.031223	0.0038854	0.0044411	0.86394	1.5851	0.1311	-0.0066432	-0.0013013	-0.0041546	-0.85488	
Deletion Peak  5 - CN values	3q13.31 	chr3:115440285-118620828(probes 323354:325588)  	chr3:116426639-116440933(probes 324020:324027)    	chr3:115826774-116670892(probes 323588:324254)    	0.018337	    0.18763		Actual Copy Change Given	-0.0030475	1.2461	0.0017187	0.64286	-0.05442	-0.55717	-0.51476	-0.17974	-0.03817	-0.3393	0.041741	-0.062898	0.0428	-0.0026877	-0.043473	-0.3058	0	-0.0023553	-0.26155	-0.14139	-0.0014452	0.00041593	-0.52187	0.31221	0.61426	0	-0.040209	-0.12901	-0.80421	-0.60439	-0.51794	0.01462	0.019223	-0.0018014	0.022024	-0.0016629	-0.021647	0.52573	-0.021999	-1.2929	-1.2112	1.7235	0.00012257	-0.034676	0.0033299	-0.10717	-0.01106	0	0.016006	-0.015329	-0.0047079	0.0034687	-0.37691	0.87089	0.0020097	-0.031017	-0.037325	-0.48575	-0.0033022	-1.0359	0.0027745	-0.094138	1.5379	1.0616	-0.42517	-1.0402	-0.054466	-0.031223	0.0038854	0.0044411	0.86394	1.5851	0.1311	-0.0066432	-0.0013013	-0.0041546	-0.85488	
Deletion Peak  6 - CN values	4q34.3  	chr4:178911874-183060693(probes 465217:467345)  	chr4:181521852-182082855(probes 466555:466558)    	chr4:181525132-191154276(probes 466556:469764)    	1.3432e-08	 3.6294e-05		Actual Copy Change Given	-0.0095426	0.0016642	0.020678	-0.14644	1.6924	-0.041159	-1.1404	-0.07067	0.66124	0.27538	-0.67518	0.34275	0.029759	0.005373	-0.073884	0.01127	0.44787	-0.030253	-1.2064	0.93189	-0.58432	-0.00013862	-0.57041	0.20585	1.2032	-0.3112	1.5963	-0.61767	0.014051	-0.012576	-0.92592	0.027497	0	-0.013264	-0.51043	0.0070826	1.5006	-0.050641	-0.82175	-0.88364	-1.2929	1.5615	0.0091544	0.19918	0	-0.13827	-0.059205	-0.74534	0.73739	-0.019452	0.0093644	0.0024969	0.013554	-0.060076	0.010982	1.0683	1.9196	-1.0336	0.024689	-0.94327	0.035665	1.3035	-0.03749	1.0011	0.10906	0.93589	0.4996	-0.032996	0.017395	0	0.9011	1.5598	0.03003	0.019363	-0.0084385	-0.45286	-0.85401	
Deletion Peak  7 - CN values	4q35.1  	chr4:183089198-184213557(probes 467371:467710)  	chr4:183239900-184213557(probes 467505:467710)    	chr4:181525132-191154276(probes 466556:469764)    	1.5972e-15	 1.4078e-11		Actual Copy Change Given	-0.0095426	0.0016642	0.020678	-0.098418	-0.089699	-0.048478	-0.55397	-0.07067	0.73929	0.069669	-0.67518	-0.59857	0.043865	-0.50312	-0.073884	-0.014494	0.44787	-0.030253	-0.7063	0.93189	-0.58432	-0.00013862	-0.11848	0.23442	1.2032	-1.2929	1.5963	-0.037218	0.031295	-1.2928	-1.2929	0.027497	0	-0.013264	-0.57536	0.0070826	1.5006	-1.2929	-0.008379	-0.18873	0.032422	1.6025	0.0091544	1.7078	0	-1.2929	-0.017116	-0.04048	0.73739	-0.019452	0.0093644	0.0024969	-0.0012455	-0.060076	0.010982	1.0683	-0.12525	-0.49319	0.024689	-1.0595	0.035665	1.3035	-0.03749	1.0011	0.10906	0.56828	-0.13871	1.6739	0.017395	0	0.9011	1.4887	0.03003	0.019363	-0.0084385	-0.45286	-0.85401	
Deletion Peak  8 - CN values	6p25.2  	chr6:1-21599699(probes 570305:584752)              	chr6:3257168-3464985(probes 571993:572116)            	chr6:3337787-3340344(probes 572055:572056)            	0.16784	     0.1602		Actual Copy Change Given	0.0037465	-0.026949	0.0072763	0.94203	-0.049424	0.49562	0.027638	0.21146	-0.036946	0.75891	0.018243	0.62333	-0.78715	0.48158	-0.035456	-0.33536	0.0046878	-0.040774	-0.16764	1.0223	0.53538	0.00027728	-0.78588	-0.56972	-0.087712	0.071535	-0.038306	-0.035993	0.036653	-0.005261	0.049824	0.0016642	-1.0081	-0.0089906	-0.0091741	-0.025828	-0.019314	-0.027398	0.0033897	-0.03885	0.0019418	1.7415	-0.66106	-0.051631	0.00055459	-0.10099	0.016286	-0.038463	1.0544	0.012376	0.85121	0	0.010207	-0.059	-0.0013858	-0.043161	-0.072524	-1.0073	-0.0070576	-1.0537	0.013353	-0.067056	-0.038986	1.0759	-0.11339	0.40677	0.52083	-0.029857	-0.0033243	0.00013863	-0.090302	-0.063301	0.47478	0	0.0011093	0.0076392	0.023286	
Deletion Peak  9 - CN values	6q26    	chr6:88753800-171115067(probes 618827:666836)    	chr6:163758942-163841899(probes 663520:663577)    	chr6:162035077-164048563(probes 662666:663688)    	0.061686	   0.061686		Actual Copy Change Given	-0.010646	-0.026304	0.0046345	-0.061152	-0.066141	1.0462	-0.54411	0.28501	-0.056981	0.72565	-0.65668	0.58399	-0.78966	0.49763	-0.054023	-0.32239	0.0046878	-0.033258	-0.17866	0.9867	1.0648	0.00027728	-0.019314	-0.56833	-0.087712	-0.24569	-0.04983	-0.098491	0.027497	-0.012586	-0.39826	-0.050286	-1.0345	-0.0089906	-1.175	-0.0087146	-0.029584	-0.043691	-0.012378	1.4762	-0.0026322	-0.14836	-0.010524	-0.048928	0.00055459	-0.11503	-0.0069195	-0.041024	1.0658	-0.0040959	0.89192	0	0.01523	-0.067993	-0.0013858	-0.043161	-0.067056	-1.0073	-0.010993	-0.016567	-0.88349	-0.067056	-0.038986	1.0759	-0.11339	0.33772	0.52083	-0.051721	-0.0033243	-0.031725	-0.072808	-0.091702	-0.29544	0	-0.00036515	0.65737	0.024268	
Deletion Peak 10 - CN values	7q32.3  	chr7:95210837-159138663(probes 715227:748194)    	chr7:130565698-130599863(probes 733282:733314)    	chr7:130579163-130580342(probes 733299:733300)    	0.061686	   0.061686		Actual Copy Change Given	-0.0073339	0.99177	1.4484	-0.9257	0.8693	0.33092	0.04344	0.69073	0.7317	0.88026	0.031155	-0.079927	0.029044	-0.527	1.3082	0.8089	-0.0047517	1.4462	0.85087	1.0311	-0.60477	-0.0012473	-0.051586	0.26247	1.2324	0.049256	0.79336	0.68589	0.021183	0.57701	0.14043	-0.013677	-1.0188	1.354	-0.026441	1.348	-0.037709	-0.038578	-0.91744	1.494	0	1.6876	0	0.85476	0.0020805	1.6284	-0.015132	0.61281	0.84554	0.0033299	1.7704	-0.0013365	-0.0014628	0.86712	-0.020963	1.0935	1.889	0.036512	-0.67747	0	-0.0036984	1.4536	1.5568	1.1253	0.086587	0.92329	0.53415	0.71058	1.1436	-0.016841	-0.089699	1.5898	0.069669	1.137	-0.0046403	0	0.039902	
Deletion Peak 11 - CN values	9p23    	chr9:3824005-26894302(probes 831780:846208)        	chr9:8310705-10619051(probes 834318:835651)          	chr9:9216369-9219832(probes 834985:834986)            	0.037028	    0.12548		Actual Copy Change Given	-0.031632	-0.0044273	-0.0024395	1.4212	1.8034	0	-0.49277	-0.23984	-0.86013	0.17769	0.043865	-0.22539	0.052952	0.0077226	1.2787	0.98185	-0.0090933	-0.019314	-0.17041	-0.090169	-0.56475	-0.0013858	-0.54239	0.041175	-0.057753	-0.84547	-0.0059522	-0.1025	0	0.020903	-0.46504	-0.026182	-0.98597	-0.014277	-0.55046	-0.0036011	-0.020127	-0.60825	-0.04896	1.5279	0.011178	1.7617	-0.017545	-0.039302	-0.00055444	-0.091626	0.026373	1.3778	-1.0375	-0.88287	-0.0078863	-0.0094046	0.019285	-0.033269	-0.019953	-0.01928	-0.063435	-0.99325	0.00013863	-1.0347	-0.86216	-0.041562	1.5232	-0.024935	0.09101	-0.50269	-0.0189	-0.019863	-0.0029091	-0.011611	1.8148	1.5938	-0.15042	0.010982	-0.0020784	0.016425	0.019223	
Deletion Peak 12 - CN values	9p21.3  	chr9:21865498-21997722(probes 843212:843276)      	chr9:21959052-21997722(probes 843263:843276)        	chr9:20635116-33234764(probes 842339:849855)        	1.3823e-06	 1.3782e-05		Actual Copy Change Given	-0.031632	-0.0044273	-0.0067271	1.3517	1.7293	0	-0.49277	-0.23459	-0.83607	0.62079	0.043865	-0.22539	0.052952	0.0077226	1.2787	0.98185	-0.0090933	-0.019314	-0.17041	-0.090169	-0.56057	-0.0013858	-0.54239	0.041175	-0.057753	-0.84547	-0.88596	-0.078677	-0.012989	0.010285	-0.46504	-0.026182	-0.98597	-0.014277	-0.53683	-0.021149	-0.020127	-1.2225	-0.9087	1.5279	-0.65174	1.7477	-0.017545	-0.039302	-0.00055444	-0.091626	0.044574	1.3778	-1.2929	-0.85583	-0.0078863	-0.0094046	0.019285	-0.033269	-0.01037	-0.01928	-0.063435	-1.2929	0.00013863	-1.0347	-1.2929	-0.041562	1.5232	-0.024935	0.09101	-0.50269	-0.024129	-0.019863	-0.0029091	-0.011611	1.7858	1.5938	-0.15042	0.010982	-0.0020784	0.016425	0.019223	
Deletion Peak 13 - CN values	10q26.3 	chr10:134118510-135534747(probes 978462:978729)	chr10:134898067-135206872(probes 978631:978723)  	chr10:134868594-135206872(probes 978630:978723)  	0.15194	     0.1466		Actual Copy Change Given	0.031436	1.3459	-0.036025	-0.088507	0.88626	-0.02151	0.64268	-0.058334	0.75127	-0.29804	0.0041632	0.43395	-0.018902	-0.010563	0.66086	-0.3601	0.015835	-0.046688	0.71961	-0.030364	0.55337	0.0015255	0.55071	-0.55887	-0.010646	-0.38257	-0.014228	-0.037455	0.026924	0.60196	-0.95507	-0.036339	-1.071	-0.013264	0	-0.023018	-0.015191	-0.62474	0.022224	1.5259	-0.0011087	1.7706	-0.029737	-0.042426	-0.0064895	-0.097124	0.11213	0.66454	-0.025893	0.0084743	-0.01849	-0.030131	-0.27912	0.88006	-0.015329	-0.028047	1.7921	0.044857	0.66143	-0.99479	0.010564	0.03214	1.5436	-0.040209	0.078894	0	-0.01037	0.78968	-0.052569	-0.016979	0.79646	1.6045	0.28469	-0.0080244	0.0026357	0.020203	-0.053881	
Deletion Peak 14 - CN values	11p15.5 	chr11:1681026-1944201(probes 979108:979130)        	chr11:1681228-1920254(probes 979109:979124)          	chr11:1608435-1928556(probes 979057:979126)          	0.0052259	  0.0052259		Actual Copy Change Given	1.1444	-0.0027707	-0.043142	-0.09446	-0.044686	-0.027945	0.032563	0.42688	-0.037354	-0.3105	-0.020961	-0.22807	-0.7916	-0.024722	-0.026902	-0.68423	-0.4545	-0.048863	-0.16714	-0.093255	0.0069435	0.00027728	0	-0.55937	-0.06048	0.090285	-0.031632	-0.058596	-0.79863	-0.59643	-0.82976	-0.035993	0.0051359	-0.021235	-0.013953	-0.02384	0.064472	-0.042381	-0.92767	-0.059745	-0.59244	-0.022744	0.0065101	-0.040525	-0.00097017	-1.2385	0.067661	0.60377	-0.035857	-0.029721	-0.025072	-0.019177	-0.30334	-0.048207	-0.024524	-0.019554	-0.068377	-0.99004	0.66124	-0.020961	0.0077783	-0.015604	-0.015191	-0.031768	-0.0091286	-0.48218	-0.5797	-0.028355	-0.01354	-0.024251	-0.082177	-0.048748	0.4656	-0.019726	0.0020805	-0.84219	-0.9248	
Deletion Peak 15 - CN values	11q24.3 	chr11:1-135006516(probes 978730:1056009)          	chr11:128703437-128815336(probes 1052667:1052758)	chr11:128672475-128817475(probes 1052636:1052764)	0.2463	     0.2463		Actual Copy Change Given	0.015028	-0.0027707	-0.046477	-0.03749	-0.044686	-0.027945	0.053521	-0.14893	-0.85528	-0.29236	-0.030612	-0.20896	-0.79043	-0.041236	-0.044965	-0.70784	-0.4545	-0.040888	-0.032314	-0.088468	-0.0031859	0.00027728	-0.53236	-0.55937	-0.06048	-0.25285	-0.030677	-0.075502	-0.79703	0.00069327	0.45411	-0.070001	-0.99562	-0.021235	0.004719	-0.02384	-0.034631	0.53749	-0.92767	-0.056515	-0.60134	-0.053881	-0.012092	-0.040525	-0.00097017	-0.10257	0.041317	-0.045385	-0.035857	-0.029721	-0.016777	-0.019177	-0.16721	-0.048207	-0.046494	-0.025859	-0.060614	-1.2929	0.65809	-0.020961	0.03031	-0.010922	-0.015191	-0.031768	-0.0091286	-0.47152	-0.5797	0.020343	-0.01354	-0.039774	-0.075341	-0.047389	0.8122	-0.011194	0.0020805	-0.84219	-0.84883	
Deletion Peak 16 - CN values	12q14.2 	chr12:56315051-92536825(probes 1084804:1106470)  	chr12:63538123-63547647(probes 1089086:1089095)    	chr12:63537413-63592577(probes 1089084:1089112)    	0.12548	    0.12548		Actual Copy Change Given	-0.0020784	1.3143	1.1172	2.1099	1.7547	0.49704	0.5962	0.49654	1.4544	1.2096	-0.4867	0.95693	0.041317	0.46629	1.2934	1.0966	0.45526	1.4016	0.8689	1.0159	0.59206	0	0.50307	0.31994	1.2893	0.063707	1.6198	0.75185	0.010006	0.57006	2.1835	1.6889	-0.0098185	1.3222	0.52888	1.425	1.5352	1.0597	0.0036675	1.5115	-1.2731	-0.060284	-0.66347	1.7471	0.001803	1.6091	1.5409	1.2941	1.0497	0.0041632	1.734	1.1394	1.1894	0.87627	1.4142	1.1137	1.8333	0.036935	0.64323	0.015518	-0.0033243	1.4448	1.5093	1.1303	-0.98534	1.8185	0.53222	1.5975	1.1223	1.5418	1.7982	1.5712	-0.092081	1.108	-0.0019507	-0.0027707	0.0040243	
Deletion Peak 17 - CN values	13q14.2 	chr13:48833767-49064807(probes 1148581:1148832)  	chr13:48875753-49060837(probes 1148604:1148830)    	chr13:48898172-49075112(probes 1148634:1148841)    	0.00038834	 0.00038834		Actual Copy Change Given	-0.0020784	0.30617	-0.057109	-0.11592	-0.065179	-0.037218	-1.1201	-0.07516	-0.058855	-0.32839	-1.2929	-0.33759	-0.73967	-0.93381	-0.049702	-0.10367	-0.92958	-0.0123	-0.16739	1.001	0.00097064	-0.00069303	-0.5293	-0.71551	-0.094988	-0.85829	-0.071472	-0.085988	-0.79795	-0.0062286	-0.5243	-0.0091286	-0.98033	-0.015329	-0.55561	-0.0029091	-0.035721	-0.64987	-0.011713	1.4551	-0.59048	-1.2929	-0.016995	-0.89284	0.0019418	1.5029	-0.0046403	0.017684	-1.0223	-0.0099565	0	-0.0071958	-0.91368	-0.031758	-0.0048461	-0.052767	-0.06008	0.037217	-0.66031	0.025856	-0.0038779	-0.07949	-0.019452	-0.64706	-0.4174	0.42957	-0.60015	-0.039529	0	-0.0019399	-0.069198	-0.06424	-0.10695	0.0037465	-0.005261	-0.8544	-0.85286	
Deletion Peak 18 - CN values	16p13.3 	chr16:5144019-8620694(probes 1282339:1284394)      	chr16:6066397-7771745(probes 1282976:1283835)        	chr16:7369731-7376241(probes 1283406:1283407)        	0.12548	    0.12548		Actual Copy Change Given	0.03369	0.0065262	1.3443	0.75051	1.7683	-0.73258	-0.5129	-0.085457	0.77849	0.79174	-0.49975	0.47263	0.018292	-0.040399	1.2836	0.78834	0.49472	1.2986	0.80539	0.67091	0.032422	-0.0042435	-0.01037	0.2719	1.4063	0.07096	1.7837	0.8412	0.0090491	0.6007	-0.34698	1.6008	-0.013815	1.3214	-0.026577	1.379	1.6155	0.56578	0.033046	-1.2929	0.034254	1.8225	0.045975	1.6904	-0.0083005	1.6737	0.097833	0.5019	0.58148	0.028161	1.6444	1.1375	1.0475	0.8412	1.3887	1.1537	1.7649	0.04195	0.66235	0.012795	0.068378	0.055373	-0.015879	0.048262	0.10278	1.0733	0.020623	0.0058249	1.0356	1.5232	0.80636	1.5813	-0.12252	1.0979	0.0063871	0.061365	-0.055364	
Deletion Peak 19 - CN values	16q23.1 	chr16:1-90354753(probes 1280673:1321479)           	chr16:78129058-79247026(probes 1313893:1314905)    	chr16:78583258-78586506(probes 1314400:1314401)    	0.2463	     0.2463		Actual Copy Change Given	0.026701	0.0065262	1.3981	-0.063166	1.7683	-0.07401	-0.51115	-0.085457	0.766	0.79419	-0.68624	0.5149	0.018292	0.4883	1.3051	0.78834	0.49472	1.3143	0.82177	-0.0092263	0.034113	-0.0016629	0.0073609	0.2719	1.4198	0.07096	1.7231	0.39263	0.024969	0.61498	0.21637	1.4663	-1.0076	1.3214	-0.091153	1.379	1.6098	0.031155	0.033046	1.5502	0.043723	1.7885	0.025164	0.80202	-0.014247	1.6998	0	0.5252	0.58148	0.028161	1.7146	1.1375	1.0199	0.8412	1.3887	1.1537	-0.12771	0.053806	-0.67969	0.012795	-0.87252	0.055373	-0.015879	0	0.10278	1.0733	0.020623	0.85185	1.0356	1.5232	0.80636	1.629	0.87966	1.0979	0.0063871	0.057226	0.011261	
Deletion Peak 20 - CN values	17q11.2 	chr17:29704122-29888119(probes 1332988:1333071)  	chr17:29858465-29872630(probes 1333064:1333065)    	chr17:29851236-29883766(probes 1333057:1333069)    	0.058258	   0.058258		Actual Copy Change Given	-0.0071958	0	-0.083679	-0.059538	-0.030813	0.00041593	-0.55564	0.18632	-0.021921	-0.31716	-0.71319	-0.19325	0.046133	-0.029502	-0.089964	-0.38626	0.02564	-0.079476	-0.16064	0	0.52136	-0.0031859	-1.2929	0.31562	0.027165	-0.84587	0.053521	-0.011787	-1.2647	0.0049218	0.041741	-0.042609	-0.057458	0.015866	-0.60786	-0.059135	0.055943	0.0084743	0.033716	-0.0045695	-0.58225	0.0093098	0.025655	-0.086297	-0.0033243	-0.087019	0.043723	-0.11469	-0.081605	0.047552	-0.068931	0.0013041	-0.21423	-0.021647	-0.0073339	0.029301	-0.091949	-0.47215	-0.66818	-1.0219	0.040044	0.086666	-0.0077482	0.010564	-0.044686	-0.41553	0.02322	-0.016567	-0.053881	0.0015255	1.5875	-0.016704	-0.09261	-0.038034	0.023847	-0.40473	-0.91018	
Deletion Peak 21 - CN values	17q21.31	chr17:26570940-53405607(probes 1331760:1343951)  	chr17:41098755-42281281(probes 1338236:1338830)    	chr17:36926182-43018065(probes 1336287:1339140)    	0.02022	   0.067724		Actual Copy Change Given	0.97791	0	-0.083679	0.012934	-0.030813	0.00041593	-1.1213	0.18632	-0.021921	-0.31716	-0.042245	-0.19325	0.046133	-0.029502	-0.028772	-0.38626	0.02564	-0.079476	-0.16064	0	0.52136	-0.0031859	-0.54576	0.31562	0.027165	-0.85908	0.053521	-0.011787	-0.78841	0.0070826	0.075703	-0.011887	-0.057458	0.015866	-0.62322	-0.059135	0.055943	-0.019589	0.033716	-0.0045695	-0.58225	0.0093098	-0.62466	-0.086297	-0.0033243	-0.087019	0.022725	-0.81671	-0.081605	0.047552	-0.068931	0.013632	-0.21423	-0.021647	-0.0073339	0.029301	-0.091949	-0.47215	-0.68067	-1.0219	-0.81367	0.086666	-0.0077482	0.010564	-0.044686	-0.43127	0.02322	-0.78589	-0.053881	0.0015255	1.5875	-0.016704	-0.09261	-0.038034	0.023847	-0.82032	-0.91018	
Deletion Peak 22 - CN values	17q24.2 	chr17:66185305-66865465(probes 1351029:1351489)  	chr17:66505806-66558846(probes 1351218:1351243)    	chr17:66225358-67805453(probes 1351046:1352057)    	0.011389	   0.016815		Actual Copy Change Given	0.019363	0	-0.083679	-0.93437	-0.030813	0.00041593	-0.54482	0.18632	-0.021921	-0.31716	-0.042245	-0.19325	0.046133	-0.029502	-0.028772	-0.38626	0.02564	-0.079476	-0.16749	0	-1.2136	-0.0031859	0.49355	0.31562	0.027165	-0.86876	0.027076	-0.011787	-0.80629	0.0070826	0.075703	-0.028369	-0.03245	0.015866	-0.056173	-0.059135	0.055943	0.026935	-0.89875	-0.0045695	-0.58225	-0.061482	2.6731	1.6996	-0.0033243	-0.087019	0.056655	-0.81901	-0.081605	0.047552	-0.075878	0.013632	-0.21423	-0.024573	-0.0073339	0.029301	-0.10145	-0.47215	0.054233	-1.0219	-0.8467	0.084955	-0.0077482	0.010564	-0.056132	-1.2929	0.02322	-0.015604	-0.053881	0.0015255	1.5875	-0.049424	-0.09261	-0.038034	0.023847	-0.82032	-0.89396	
Deletion Peak 23 - CN values	22q12.1 	chr22:29192671-29455701(probes 1487329:1487508)  	chr22:29276121-29455701(probes 1487378:1487508)    	chr22:29022089-29624466(probes 1487254:1487605)    	4.5487e-22	 4.5487e-22		Actual Copy Change Given	-0.005261	-0.19099	-0.19073	-0.049424	-0.028081	-0.53409	-1.1376	-0.18546	-1.2929	-0.31937	-0.15975	-1.2929	-0.8065	-0.55611	-0.04388	-0.38797	-0.91809	1.1762	-1.2251	0.04504	0.03637	-0.0023553	-0.55076	-0.59214	-0.74177	0.055943	0.014051	-0.45565	-0.81425	-1.2929	-0.80103	-0.061555	-0.047124	-0.0033243	-1.176	-0.077478	0.0375	-0.61258	0.064429	-0.0084385	-1.1258	-1.2929	0.025655	-0.088418	-0.0011087	-0.070879	-1.009	-0.11952	-1.2929	0.070099	-0.081206	-0.029721	-0.90976	-0.028081	-0.064106	0.037112	-0.1329	-0.99583	-0.0056757	-0.8786	-0.85448	0.11991	-0.0098185	0.049256	-0.39674	-0.90533	-0.54593	-1.2929	-0.076945	-0.028218	-0.15515	-0.049559	-0.1294	-0.046177	-0.38131	-0.81991	-0.07703	
