
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/4426265/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/CESC-TP/4395285/CESC-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=CESC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=CESC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/CESC-TP/4395285/CESC-TP.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/4426265/transformed.cor.cli.txt"

nPatients in clinical file=74, in cluster file=155, common to both=68
[1] 52 68
[1] "AMP PEAK  1(1Q21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           37                            31 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           37                            31 
[1] "AMP PEAK  2(2P24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                           16                            52 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                           16                            52 
[1] "AMP PEAK  3(2Q32.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(2Q32.3) MUTATED AMP PEAK  3(2Q32.3) WILD-TYPE 
                            9                            59 
  AMP PEAK  3(2Q32.3) MUTATED AMP PEAK  3(2Q32.3) WILD-TYPE 
                            9                            59 
[1] "AMP PEAK  4(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                           50                            18 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                           50                            18 
[1] "AMP PEAK  5(3Q28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q28) MUTATED AMP PEAK  5(3Q28) WILD-TYPE 
                         49                          19 
  AMP PEAK  5(3Q28) MUTATED AMP PEAK  5(3Q28) WILD-TYPE 
                         49                          19 
[1] "AMP PEAK  6(4Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                          8                          60 
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                          8                          60 
[1] "AMP PEAK  7(6P21.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                            19                             49 
  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                            19                             49 
[1] "AMP PEAK  8(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                            28                             40 
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                            28                             40 
[1] "AMP PEAK  9(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(9P24.1) MUTATED AMP PEAK  9(9P24.1) WILD-TYPE 
                           12                            56 
  AMP PEAK  9(9P24.1) MUTATED AMP PEAK  9(9P24.1) WILD-TYPE 
                           12                            56 
[1] "AMP PEAK 10(9P24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                           14                            54 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                           14                            54 
[1] "AMP PEAK 11(11P13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           3                           65 
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           3                           65 
[1] "AMP PEAK 12(11Q13.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             9                             59 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             9                             59 
[1] "AMP PEAK 13(11Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                            13                             55 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                            13                             55 
[1] "AMP PEAK 14(13Q22.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                            12                             56 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                            12                             56 
[1] "AMP PEAK 15(14Q24.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                            11                             57 
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                            11                             57 
[1] "AMP PEAK 16(15Q26.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                            14                             54 
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                            14                             54 
[1] "AMP PEAK 17(16P13.13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                             13                              55 
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                             13                              55 
[1] "AMP PEAK 18(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                           7                           61 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                           7                           61 
[1] "AMP PEAK 19(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                            18                             50 
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                            18                             50 
[1] "AMP PEAK 20(19Q13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                             21                              47 
  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                             21                              47 
[1] "AMP PEAK 21(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                             27                              41 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                             27                              41 
[1] "AMP PEAK 22(XQ28) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                         14                          54 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                         14                          54 
[1] "DEL PEAK  1(1P36.23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            10                             58 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            10                             58 
[1] "DEL PEAK  2(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           10                            58 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           10                            58 
[1] "DEL PEAK  3(2Q37.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           28                            40 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           28                            40 
[1] "DEL PEAK  4(3P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                           25                            43 
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                           25                            43 
[1] "DEL PEAK  5(3P14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                           29                            39 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                           29                            39 
[1] "DEL PEAK  6(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           15                            53 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           15                            53 
[1] "DEL PEAK  7(4Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                           21                            47 
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                           21                            47 
[1] "DEL PEAK  8(5Q15) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE 
                         20                          48 
  DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE 
                         20                          48 
[1] "DEL PEAK  9(5Q35.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q35.2) MUTATED DEL PEAK  9(5Q35.2) WILD-TYPE 
                           19                            49 
  DEL PEAK  9(5Q35.2) MUTATED DEL PEAK  9(5Q35.2) WILD-TYPE 
                           19                            49 
[1] "DEL PEAK 10(6P24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6P24.2) MUTATED DEL PEAK 10(6P24.2) WILD-TYPE 
                            9                            59 
  DEL PEAK 10(6P24.2) MUTATED DEL PEAK 10(6P24.2) WILD-TYPE 
                            9                            59 
[1] "DEL PEAK 11(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         21                          47 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         21                          47 
[1] "DEL PEAK 12(7Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE 
                         12                          56 
  DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE 
                         12                          56 
[1] "DEL PEAK 13(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             17                              51 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             17                              51 
[1] "DEL PEAK 14(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE 
                            20                             48 
  DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE 
                            20                             48 
[1] "DEL PEAK 15(11Q25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                          43                           25 
  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                          43                           25 
[1] "DEL PEAK 16(13Q12.12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                             22                              46 
  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                             22                              46 
[1] "DEL PEAK 17(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                            25                             43 
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                            25                             43 
[1] "DEL PEAK 18(14Q32.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                              9                              59 
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                              9                              59 
[1] "DEL PEAK 19(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                            15                             53 
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                            15                             53 
[1] "DEL PEAK 20(16Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE 
                            14                             54 
  DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE 
                            14                             54 
[1] "DEL PEAK 21(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            13                             55 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            13                             55 
[1] "DEL PEAK 22(17P12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          19                           49 
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          19                           49 
[1] "DEL PEAK 23(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                            13                             55 
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                            13                             55 
[1] "DEL PEAK 24(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                            16                             52 
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                            16                             52 
[1] "DEL PEAK 25(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(19Q13.33) MUTATED DEL PEAK 25(19Q13.33) WILD-TYPE 
                              8                              60 
  DEL PEAK 25(19Q13.33) MUTATED DEL PEAK 25(19Q13.33) WILD-TYPE 
                              8                              60 
[1] "DEL PEAK 26(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE 
                            13                             55 
  DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE 
                            13                             55 
[1] "DEL PEAK 27(21Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(21Q21.1) MUTATED DEL PEAK 27(21Q21.1) WILD-TYPE 
                            14                             54 
  DEL PEAK 27(21Q21.1) MUTATED DEL PEAK 27(21Q21.1) WILD-TYPE 
                            14                             54 
[1] "DEL PEAK 28(22Q13.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                             16                              52 
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                             16                              52 
[1] "DEL PEAK 29(XP11.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(XP11.3) MUTATED DEL PEAK 29(XP11.3) WILD-TYPE 
                           21                            47 
  DEL PEAK 29(XP11.3) MUTATED DEL PEAK 29(XP11.3) WILD-TYPE 
                           21                            47 
[1] "DEL PEAK 30(XQ21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE 
                            15                             53 
  DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE 
                            15                             53 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "HISTOLOGICALTYPE"                      
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "NUMBERPACKYEARSSMOKED"                 
[16] "NUMBER.OF.LYMPH.NODES"                 
[17] "BATCHNUMBER"                           

Input Data has 17 rows and 68 columns.

[1] "Batch" "17"   
[1] "Last Follow UP"
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
        1505          925           NA         1112         5385           NA 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
          NA         1616           NA           NA           NA         2382 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
        2669         1791           NA           81         2127         2892 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
         183          208            8           53           40           25 
TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
          19           20           54            9           10            8 
TCGA-EK-A2PI TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K 
          NA          500          241          211           34           37 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
          37           30           66            2           31           44 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
          48           45           24          106           41           31 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA 
         773           NA          632          244         4482         3780 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
          NA         3571         2948         2393         2493          808 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AV TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BD 
        1106            3           NA           27            2          904 
TCGA-MY-A5BE TCGA-MY-A5BF 
           2          132 
Variable 1:'AGE':	nDistinctValues=37,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=53,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=15,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NUMBERPACKYEARSSMOKED':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'BATCH.NUMBER':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "PATHOLOGY.T.STAGE"                     
[3] "PATHOLOGY.N.STAGE"                     
[4] "PATHOLOGY.M.STAGE"                     
[5] "HISTOLOGICAL.TYPE"                     
[6] "RADIATIONS.RADIATION.REGIMENINDICATION"
[7] "NUMBERPACKYEARSSMOKED"                 
[8] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "2"          
[1] "PATHOLOGY.N" "3"          
Output Data has 68 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=37, binary=FALSE, numeric=TRUE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
42 20  1  1 
[1] "table(vv)"
vv
      T1 T2+T3+T4 
      42       22 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
42 20  1  1 

$ClinVariableType
[1] "binary"

$Class0_nSamples
[1] 42

$Class1_nSamples
[1] 22

$Class0_label
[1] "T1"

$Class1_label
[1] "T2+T3+T4"


      T1 T2+T3+T4 
      42       22 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=11, binary=FALSE, numeric=TRUE
NUMBER.OF.LYMPH.NODES, nv=5, binary=FALSE, numeric=TRUE

Clustering(1) Variable = AMP PEAK  1(1Q21.3) MUTATION ANALYSIS
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1Q21.3) MUTATED   32  3
  AMP PEAK  1(1Q21.3) WILD-TYPE 24  7
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           35                            31 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                            3                             7 
$`AMP PEAK  1(1Q21.3) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF 
       49.48        30.41        36.56       177.04         5.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL 
       35.61         2.43        78.31        87.75        58.88         2.66 
TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
       69.93         6.02         1.74         1.32         0.82         0.62 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23L TCGA-FU-A3EO 
        0.66         1.78         6.94         1.12         1.22         2.17 
TCGA-FU-A3NI TCGA-FU-A40J TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3LC 
        1.45         1.35        25.41        20.78         8.02       117.40 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU TCGA-MY-A5BE 
       78.67        81.96        36.36         0.10         0.07 

$`AMP PEAK  1(1Q21.3) WILD-TYPE`
TCGA-C5-A0TN TCGA-C5-A1M5 TCGA-C5-A1MN TCGA-DS-A0VK TCGA-DS-A0VN TCGA-DS-A5RQ 
       11.44        67.46        40.93        36.76        95.08         6.84 
TCGA-EA-A1QT TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.26         0.30         0.33         0.26        16.44         7.92 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        1.22         0.99         0.07         1.02         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HM-A3JJ TCGA-IR-A3L7 TCGA-IR-A3LA 
        0.79         3.48         1.02        21.67       147.35       124.27 
TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LK TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BD 
       66.81        96.92        26.56         0.89         0.07        29.72 
TCGA-MY-A5BF 
        4.34 

  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                         0.07                          0.07 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                       177.04                        147.35 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                         6.94                          4.34 
[1] "0.1 - 177.0 (6.9)" "0.1 - 147.3 (4.3)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
[1] "hr=" "3.1"
D1V2, continuous
                               vv
clus                            T1 T2+T3+T4
  AMP PEAK  1(1Q21.3) MUTATED   20       14
  AMP PEAK  1(1Q21.3) WILD-TYPE 22        8
D1V3, multiclass
          clus
vv         AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  T1                                20                            22
  T2+T3+T4                          14                             8
D1V4, binary
                               cls
clus                             0  1
  AMP PEAK  1(1Q21.3) MUTATED   21 12
  AMP PEAK  1(1Q21.3) WILD-TYPE 21  9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED     21   12
  AMP PEAK  1(1Q21.3) WILD-TYPE   21    9
   clus
vv  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  0                          21                            21
  1                          12                             9
                               vv
clus                            M0 M1 MX
  AMP PEAK  1(1Q21.3) MUTATED   23  2  9
  AMP PEAK  1(1Q21.3) WILD-TYPE 17  0 12
D1V5, multiclass
    clus
vv   AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  M0                          23                            17
  M1                           2                             0
  MX                           9                            12
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  1(1Q21.3) MUTATED                                 33
  AMP PEAK  1(1Q21.3) WILD-TYPE                               25
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  1(1Q21.3) MUTATED                                               0
  AMP PEAK  1(1Q21.3) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  1(1Q21.3) MUTATED                                     4
  AMP PEAK  1(1Q21.3) WILD-TYPE                                   4
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  1(1Q21.3) MUTATED                                           0
  AMP PEAK  1(1Q21.3) WILD-TYPE                                         1
D1V6, multiclass
                                               clus
vv                                              AMP PEAK  1(1Q21.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       33
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     4
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               0
                                               clus
vv                                              AMP PEAK  1(1Q21.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         25
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       4
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 1
D1V7, binary
                               cls
clus                             0  1
  AMP PEAK  1(1Q21.3) MUTATED    9 28
  AMP PEAK  1(1Q21.3) WILD-TYPE  5 26
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED      9   28
  AMP PEAK  1(1Q21.3) WILD-TYPE    5   26
     clus
vv    AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  NO                            9                             5
  YES                          28                            26
D1V8, continuous
D1V9, continuous

Clustering(2) Variable = AMP PEAK  2(2P24.3) MUTATION ANALYSIS
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(2P24.3) MUTATED   13  2
  AMP PEAK  2(2P24.3) WILD-TYPE 43  8
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                           15                            51 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                            2                             8 
$`AMP PEAK  2(2P24.3) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EA-A439 
       30.41         5.46        35.61         6.02         1.32         0.66 
TCGA-EA-A43B TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY 
        1.78         7.92         6.94         1.22         0.99         0.07 
TCGA-FU-A40J TCGA-IR-A3LA TCGA-IR-A3LC 
        1.35       124.27       117.40 

$`AMP PEAK  2(2P24.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        11.44        36.56       177.04        67.46        53.13 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ 
        2.66        69.93        95.08         6.84         0.26         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 
        0.82         0.62         0.30         0.33         0.26        16.44 
TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        1.12         1.22         2.17         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.48         0.79         3.48         1.02        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LH 
       20.78         8.02       147.35        66.81        96.92        78.67 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       81.96        26.56        36.36         0.10         0.89         0.07 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
       29.72         0.07         4.34 

  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                         0.07                          0.07 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                       124.27                        177.04 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                         5.46                          8.02 
[1] "0.1 - 124.3 (5.5)" "0.1 - 177.0 (8.0)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
[1] "hr=" "1.3"
D2V2, continuous
                               vv
clus                            T1 T2+T3+T4
  AMP PEAK  2(2P24.3) MUTATED    8        6
  AMP PEAK  2(2P24.3) WILD-TYPE 34       16
D2V3, multiclass
          clus
vv         AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  T1                                 8                            34
  T2+T3+T4                           6                            16
D2V4, binary
                               cls
clus                             0  1
  AMP PEAK  2(2P24.3) MUTATED   10  4
  AMP PEAK  2(2P24.3) WILD-TYPE 32 17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(2P24.3) MUTATED     10    4
  AMP PEAK  2(2P24.3) WILD-TYPE   32   17
   clus
vv  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  0                          10                            32
  1                           4                            17
                               vv
clus                            M0 M1 MX
  AMP PEAK  2(2P24.3) MUTATED    9  0  4
  AMP PEAK  2(2P24.3) WILD-TYPE 31  2 17
D2V5, multiclass
    clus
vv   AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  M0                           9                            31
  M1                           0                             2
  MX                           4                            17
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  2(2P24.3) MUTATED                                 13
  AMP PEAK  2(2P24.3) WILD-TYPE                               45
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  2(2P24.3) MUTATED                                               0
  AMP PEAK  2(2P24.3) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  2(2P24.3) MUTATED                                     2
  AMP PEAK  2(2P24.3) WILD-TYPE                                   6
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  2(2P24.3) MUTATED                                           1
  AMP PEAK  2(2P24.3) WILD-TYPE                                         0
D2V6, multiclass
                                               clus
vv                                              AMP PEAK  2(2P24.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       13
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     2
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               1
                                               clus
vv                                              AMP PEAK  2(2P24.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         45
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       6
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 0
D2V7, binary
                               cls
clus                             0  1
  AMP PEAK  2(2P24.3) MUTATED    3 13
  AMP PEAK  2(2P24.3) WILD-TYPE 11 41
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(2P24.3) MUTATED      3   13
  AMP PEAK  2(2P24.3) WILD-TYPE   11   41
     clus
vv    AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  NO                            3                            11
  YES                          13                            41
D2V8, continuous
D2V9, continuous

Clustering(3) Variable = AMP PEAK  3(2Q32.3) MUTATION ANALYSIS
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(2Q32.3) MUTATED    7  1
  AMP PEAK  3(2Q32.3) WILD-TYPE 49  9
  AMP PEAK  3(2Q32.3) MUTATED AMP PEAK  3(2Q32.3) WILD-TYPE 
                            8                            58 
  AMP PEAK  3(2Q32.3) MUTATED AMP PEAK  3(2Q32.3) WILD-TYPE 
                            1                             9 
$`AMP PEAK  3(2Q32.3) MUTATED`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A2LY TCGA-EA-A439 TCGA-EA-A43B TCGA-FU-A3NI 
       30.41        11.44        78.31         0.66         1.78         1.45 
TCGA-FU-A40J TCGA-LP-A4AX 
        1.35         0.07 

$`AMP PEAK  3(2Q32.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
       35.61         2.43        40.93        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT 
        2.66        69.93        95.08         6.02         6.84         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A44S TCGA-EA-A4BA 
        1.74         1.32         0.82         0.62         0.30         0.33 
TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K 
        0.26        16.44         7.92         6.94         1.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ 
        1.22         0.99         2.17         0.07         1.02         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.48         0.79         3.48         1.02        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       20.78         8.02       147.35       124.27        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU 
       96.92        78.67        81.96        26.56        36.36         0.10 
TCGA-LP-A4AW TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.89        29.72         0.07         4.34 

  AMP PEAK  3(2Q32.3) MUTATED AMP PEAK  3(2Q32.3) WILD-TYPE 
                         0.07                          0.07 
  AMP PEAK  3(2Q32.3) MUTATED AMP PEAK  3(2Q32.3) WILD-TYPE 
                        78.31                        177.04 
  AMP PEAK  3(2Q32.3) MUTATED AMP PEAK  3(2Q32.3) WILD-TYPE 
                        1.615                         6.890 
[1] "0.1 - 78.3 (1.6)"  "0.1 - 177.0 (6.9)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  3(2Q32.3) WILD-TYPE"   "AMP PEAK  3(2Q32.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "AMP PEAK  3(2Q32.3) MUTATED" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  3(2Q32.3) WILD-TYPE"   "AMP PEAK  3(2Q32.3) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  3(2Q32.3) WILD-TYPE"   "AMP PEAK  3(2Q32.3) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "AMP PEAK  3(2Q32.3) MUTATED" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  3(2Q32.3) MUTATED" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  3(2Q32.3) WILD-TYPE"   "AMP PEAK  3(2Q32.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
  "AMP PEAK  3(2Q32.3) MUTATED" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  3(2Q32.3) WILD-TYPE"   "AMP PEAK  3(2Q32.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "AMP PEAK  3(2Q32.3) MUTATED" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  3(2Q32.3) WILD-TYPE"   "AMP PEAK  3(2Q32.3) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  3(2Q32.3) WILD-TYPE"   "AMP PEAK  3(2Q32.3) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "AMP PEAK  3(2Q32.3) MUTATED" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  3(2Q32.3) MUTATED" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  3(2Q32.3) WILD-TYPE"   "AMP PEAK  3(2Q32.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
  "AMP PEAK  3(2Q32.3) MUTATED" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  3(2Q32.3) WILD-TYPE"   "AMP PEAK  3(2Q32.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "AMP PEAK  3(2Q32.3) MUTATED" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  3(2Q32.3) WILD-TYPE"   "AMP PEAK  3(2Q32.3) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  3(2Q32.3) WILD-TYPE"   "AMP PEAK  3(2Q32.3) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "AMP PEAK  3(2Q32.3) MUTATED" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  3(2Q32.3) MUTATED" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  3(2Q32.3) WILD-TYPE"   "AMP PEAK  3(2Q32.3) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
  "AMP PEAK  3(2Q32.3) MUTATED" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"AMP PEAK  3(2Q32.3) WILD-TYPE" "AMP PEAK  3(2Q32.3) WILD-TYPE" 
[1] "hr=" "1.4"
D3V2, continuous
                               vv
clus                            T1 T2+T3+T4
  AMP PEAK  3(2Q32.3) MUTATED    6        2
  AMP PEAK  3(2Q32.3) WILD-TYPE 36       20
D3V3, multiclass
          clus
vv         AMP PEAK  3(2Q32.3) MUTATED AMP PEAK  3(2Q32.3) WILD-TYPE
  T1                                 6                            36
  T2+T3+T4                           2                            20
D3V4, binary
                               cls
clus                             0  1
  AMP PEAK  3(2Q32.3) MUTATED    5  3
  AMP PEAK  3(2Q32.3) WILD-TYPE 37 18
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(2Q32.3) MUTATED      5    3
  AMP PEAK  3(2Q32.3) WILD-TYPE   37   18
   clus
vv  AMP PEAK  3(2Q32.3) MUTATED AMP PEAK  3(2Q32.3) WILD-TYPE
  0                           5                            37
  1                           3                            18
                               vv
clus                            M0 M1 MX
  AMP PEAK  3(2Q32.3) MUTATED    5  0  3
  AMP PEAK  3(2Q32.3) WILD-TYPE 35  2 18
D3V5, multiclass
    clus
vv   AMP PEAK  3(2Q32.3) MUTATED AMP PEAK  3(2Q32.3) WILD-TYPE
  M0                           5                            35
  M1                           0                             2
  MX                           3                            18
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  3(2Q32.3) MUTATED                                  8
  AMP PEAK  3(2Q32.3) WILD-TYPE                               50
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  3(2Q32.3) MUTATED                                               0
  AMP PEAK  3(2Q32.3) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  3(2Q32.3) MUTATED                                     1
  AMP PEAK  3(2Q32.3) WILD-TYPE                                   7
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  3(2Q32.3) MUTATED                                           0
  AMP PEAK  3(2Q32.3) WILD-TYPE                                         1
D3V6, multiclass
                                               clus
vv                                              AMP PEAK  3(2Q32.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        8
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               0
                                               clus
vv                                              AMP PEAK  3(2Q32.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         50
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 1
D3V7, binary
                               cls
clus                             0  1
  AMP PEAK  3(2Q32.3) MUTATED    2  7
  AMP PEAK  3(2Q32.3) WILD-TYPE 12 47
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(2Q32.3) MUTATED      2    7
  AMP PEAK  3(2Q32.3) WILD-TYPE   12   47
     clus
vv    AMP PEAK  3(2Q32.3) MUTATED AMP PEAK  3(2Q32.3) WILD-TYPE
  NO                            2                            12
  YES                           7                            47
D3V8, continuous
D3V9, continuous

Clustering(4) Variable = AMP PEAK  4(3Q26.2) MUTATION ANALYSIS
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(3Q26.2) MUTATED   41  7
  AMP PEAK  4(3Q26.2) WILD-TYPE 15  3
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                           48                            18 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                            7                             3 
$`AMP PEAK  4(3Q26.2) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 
       49.48        30.41        11.44        36.56       177.04        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       53.13        35.61         2.43        40.93        78.31        87.75 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ 
       36.76         2.66        69.93        95.08         6.02         6.84 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
        0.26         1.74         1.32         0.82         0.62         0.66 
TCGA-EA-A44S TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3NI 
        0.30         0.26        16.44         6.94         1.22         1.45 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.48         0.79         3.48         1.35        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI 
       20.78         8.02       124.27       117.40        78.67        81.96 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
       36.36         0.10         0.89        29.72         0.07         4.34 

$`AMP PEAK  4(3Q26.2) WILD-TYPE`
TCGA-C5-A1BN TCGA-DR-A0ZM TCGA-EA-A43B TCGA-EA-A4BA TCGA-EX-A1H6 TCGA-EX-A449 
        5.46        58.88         1.78         0.33         7.92         1.12 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ 
        1.22         0.99         2.17         0.07         1.02         1.58 
TCGA-FU-A57G TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LK TCGA-LP-A4AX 
        1.02       147.35        66.81        96.92        26.56         0.07 

  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                         0.07                          0.07 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                       177.04                        147.35 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                         9.73                          1.68 
[1] "0.1 - 177.0 (9.7)" "0.1 - 147.3 (1.7)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  4(3Q26.2) WILD-TYPE" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
  "AMP PEAK  4(3Q26.2) MUTATED" "AMP PEAK  4(3Q26.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK  4(3Q26.2) WILD-TYPE"   "AMP PEAK  4(3Q26.2) MUTATED" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  4(3Q26.2) MUTATED"   "AMP PEAK  4(3Q26.2) MUTATED" 
[1] "hr=" "1.7"
D4V2, continuous
                               vv
clus                            T1 T2+T3+T4
  AMP PEAK  4(3Q26.2) MUTATED   29       18
  AMP PEAK  4(3Q26.2) WILD-TYPE 13        4
D4V3, multiclass
          clus
vv         AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  T1                                29                            13
  T2+T3+T4                          18                             4
D4V4, binary
                               cls
clus                             0  1
  AMP PEAK  4(3Q26.2) MUTATED   30 17
  AMP PEAK  4(3Q26.2) WILD-TYPE 12  4
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3Q26.2) MUTATED     30   17
  AMP PEAK  4(3Q26.2) WILD-TYPE   12    4
   clus
vv  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  0                          30                            12
  1                          17                             4
                               vv
clus                            M0 M1 MX
  AMP PEAK  4(3Q26.2) MUTATED   31  1 15
  AMP PEAK  4(3Q26.2) WILD-TYPE  9  1  6
D4V5, multiclass
    clus
vv   AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  M0                          31                             9
  M1                           1                             1
  MX                          15                             6
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  4(3Q26.2) MUTATED                                 47
  AMP PEAK  4(3Q26.2) WILD-TYPE                               11
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  4(3Q26.2) MUTATED                                               0
  AMP PEAK  4(3Q26.2) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  4(3Q26.2) MUTATED                                     2
  AMP PEAK  4(3Q26.2) WILD-TYPE                                   6
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  4(3Q26.2) MUTATED                                           1
  AMP PEAK  4(3Q26.2) WILD-TYPE                                         0
D4V6, multiclass
                                               clus
vv                                              AMP PEAK  4(3Q26.2) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       47
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     2
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               1
                                               clus
vv                                              AMP PEAK  4(3Q26.2) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         11
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       6
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 0
D4V7, binary
                               cls
clus                             0  1
  AMP PEAK  4(3Q26.2) MUTATED   12 38
  AMP PEAK  4(3Q26.2) WILD-TYPE  2 16
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3Q26.2) MUTATED     12   38
  AMP PEAK  4(3Q26.2) WILD-TYPE    2   16
     clus
vv    AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  NO                           12                             2
  YES                          38                            16
D4V8, continuous
D4V9, continuous

Clustering(5) Variable = AMP PEAK  5(3Q28) MUTATION ANALYSIS
D5V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  5(3Q28) MUTATED   41  6
  AMP PEAK  5(3Q28) WILD-TYPE 15  4
  AMP PEAK  5(3Q28) MUTATED AMP PEAK  5(3Q28) WILD-TYPE 
                         47                          19 
  AMP PEAK  5(3Q28) MUTATED AMP PEAK  5(3Q28) WILD-TYPE 
                          6                           4 
$`AMP PEAK  5(3Q28) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 
       49.48        30.41        11.44        36.56       177.04        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       53.13        35.61         2.43        40.93        78.31        87.75 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ 
       36.76         2.66        69.93        95.08         6.02         6.84 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
        0.26         1.74         1.32         0.82         0.62         0.66 
TCGA-EA-A44S TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3NI 
        0.30         0.26        16.44         6.94         1.22         1.45 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-HG-A2PA TCGA-HM-A3JK 
        1.48         0.79         3.48         1.35        25.41        20.78 
TCGA-HM-A4S6 TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL 
        8.02       124.27       117.40        78.67        81.96        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.10         0.89        29.72         0.07         4.34 

$`AMP PEAK  5(3Q28) WILD-TYPE`
TCGA-C5-A1BN TCGA-DR-A0ZM TCGA-EA-A43B TCGA-EA-A4BA TCGA-EX-A1H6 TCGA-EX-A449 
        5.46        58.88         1.78         0.33         7.92         1.12 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ 
        1.22         0.99         2.17         0.07         1.02         1.58 
TCGA-FU-A57G TCGA-HM-A3JJ TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LK 
        1.02        21.67       147.35        66.81        96.92        26.56 
TCGA-LP-A4AX 
        0.07 

  AMP PEAK  5(3Q28) MUTATED AMP PEAK  5(3Q28) WILD-TYPE 
                       0.07                        0.07 
  AMP PEAK  5(3Q28) MUTATED AMP PEAK  5(3Q28) WILD-TYPE 
                     177.04                      147.35 
  AMP PEAK  5(3Q28) MUTATED AMP PEAK  5(3Q28) WILD-TYPE 
                       8.02                        1.78 
[1] "0.1 - 177.0 (8.0)" "0.1 - 147.3 (1.8)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  5(3Q28) WILD-TYPE" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  5(3Q28) WILD-TYPE" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  5(3Q28) WILD-TYPE" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  5(3Q28) WILD-TYPE" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  5(3Q28) WILD-TYPE" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  5(3Q28) WILD-TYPE" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
  "AMP PEAK  5(3Q28) MUTATED" "AMP PEAK  5(3Q28) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"AMP PEAK  5(3Q28) WILD-TYPE"   "AMP PEAK  5(3Q28) MUTATED" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
  "AMP PEAK  5(3Q28) MUTATED"   "AMP PEAK  5(3Q28) MUTATED" 
[1] "hr=" "2.5"
D5V2, continuous
                             vv
clus                          T1 T2+T3+T4
  AMP PEAK  5(3Q28) MUTATED   28       18
  AMP PEAK  5(3Q28) WILD-TYPE 14        4
D5V3, multiclass
          clus
vv         AMP PEAK  5(3Q28) MUTATED AMP PEAK  5(3Q28) WILD-TYPE
  T1                              28                          14
  T2+T3+T4                        18                           4
D5V4, binary
                             cls
clus                           0  1
  AMP PEAK  5(3Q28) MUTATED   30 16
  AMP PEAK  5(3Q28) WILD-TYPE 12  5
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  5(3Q28) MUTATED     30   16
  AMP PEAK  5(3Q28) WILD-TYPE   12    5
   clus
vv  AMP PEAK  5(3Q28) MUTATED AMP PEAK  5(3Q28) WILD-TYPE
  0                        30                          12
  1                        16                           5
                             vv
clus                          M0 M1 MX
  AMP PEAK  5(3Q28) MUTATED   31  1 14
  AMP PEAK  5(3Q28) WILD-TYPE  9  1  7
D5V5, multiclass
    clus
vv   AMP PEAK  5(3Q28) MUTATED AMP PEAK  5(3Q28) WILD-TYPE
  M0                        31                           9
  M1                         1                           1
  MX                        14                           7
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  5(3Q28) MUTATED                                 46
  AMP PEAK  5(3Q28) WILD-TYPE                               12
                             vv
clus                          ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  5(3Q28) MUTATED                                               0
  AMP PEAK  5(3Q28) WILD-TYPE                                             1
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  5(3Q28) MUTATED                                     2
  AMP PEAK  5(3Q28) WILD-TYPE                                   6
                             vv
clus                          ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  5(3Q28) MUTATED                                           1
  AMP PEAK  5(3Q28) WILD-TYPE                                         0
D5V6, multiclass
                                               clus
vv                                              AMP PEAK  5(3Q28) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                     46
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                         0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                   2
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                             1
                                               clus
vv                                              AMP PEAK  5(3Q28) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                       12
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     6
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               0
D5V7, binary
                             cls
clus                           0  1
  AMP PEAK  5(3Q28) MUTATED   11 38
  AMP PEAK  5(3Q28) WILD-TYPE  3 16
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  5(3Q28) MUTATED     11   38
  AMP PEAK  5(3Q28) WILD-TYPE    3   16
     clus
vv    AMP PEAK  5(3Q28) MUTATED AMP PEAK  5(3Q28) WILD-TYPE
  NO                         11                           3
  YES                        38                          16
D5V8, continuous
D5V9, continuous

Clustering(6) Variable = AMP PEAK  6(4Q12) MUTATION ANALYSIS
D6V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  6(4Q12) MUTATED    6  1
  AMP PEAK  6(4Q12) WILD-TYPE 50  9
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                          7                          59 
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                          1                           9 
$`AMP PEAK  6(4Q12) MUTATED`
TCGA-C5-A1MF TCGA-C5-A1MN TCGA-DS-A3LQ TCGA-FU-A23K TCGA-IR-A3LF TCGA-IR-A3LH 
       53.13        40.93         6.02         1.22        96.92        78.67 
TCGA-MY-A5BF 
        4.34 

$`AMP PEAK  6(4Q12) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       67.46        35.61         2.43        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT 
       36.76         2.66        69.93        95.08         6.84         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B 
        1.74         1.32         0.82         0.62         0.66         1.78 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.30         0.33         0.26        16.44         7.92         6.94 
TCGA-EX-A449 TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.12         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        1.45         1.58         1.48         0.79         3.48         1.35 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.02        25.41        21.67        20.78         8.02       147.35 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      124.27        66.81       117.40        81.96        26.56        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE 
        0.10         0.89         0.07        29.72         0.07 

  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                       1.22                        0.07 
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                      96.92                      177.04 
  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE 
                      40.93                        5.46 
[1] "1.2 - 96.9 (40.9)" "0.1 - 177.0 (5.5)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK  6(4Q12) WILD-TYPE"   "AMP PEAK  6(4Q12) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  6(4Q12) MUTATED" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK  6(4Q12) MUTATED" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
  "AMP PEAK  6(4Q12) MUTATED" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"AMP PEAK  6(4Q12) WILD-TYPE"   "AMP PEAK  6(4Q12) MUTATED" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK  6(4Q12) MUTATED" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"AMP PEAK  6(4Q12) WILD-TYPE"   "AMP PEAK  6(4Q12) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK  6(4Q12) WILD-TYPE"   "AMP PEAK  6(4Q12) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  6(4Q12) MUTATED" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK  6(4Q12) MUTATED" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
  "AMP PEAK  6(4Q12) MUTATED" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"AMP PEAK  6(4Q12) WILD-TYPE"   "AMP PEAK  6(4Q12) MUTATED" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK  6(4Q12) MUTATED" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"AMP PEAK  6(4Q12) WILD-TYPE"   "AMP PEAK  6(4Q12) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK  6(4Q12) WILD-TYPE"   "AMP PEAK  6(4Q12) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  6(4Q12) MUTATED" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK  6(4Q12) MUTATED" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
  "AMP PEAK  6(4Q12) MUTATED" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"AMP PEAK  6(4Q12) WILD-TYPE"   "AMP PEAK  6(4Q12) MUTATED" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK  6(4Q12) MUTATED" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"AMP PEAK  6(4Q12) WILD-TYPE" "AMP PEAK  6(4Q12) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"AMP PEAK  6(4Q12) WILD-TYPE"   "AMP PEAK  6(4Q12) MUTATED" 
[1] "hr=" "1.9"
D6V2, continuous
                             vv
clus                          T1 T2+T3+T4
  AMP PEAK  6(4Q12) MUTATED    3        3
  AMP PEAK  6(4Q12) WILD-TYPE 39       19
D6V3, multiclass
          clus
vv         AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  T1                               3                          39
  T2+T3+T4                         3                          19
D6V4, binary
                             cls
clus                           0  1
  AMP PEAK  6(4Q12) MUTATED    4  2
  AMP PEAK  6(4Q12) WILD-TYPE 38 19
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  6(4Q12) MUTATED      4    2
  AMP PEAK  6(4Q12) WILD-TYPE   38   19
   clus
vv  AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  0                         4                          38
  1                         2                          19
                             vv
clus                          M0 M1 MX
  AMP PEAK  6(4Q12) MUTATED    3  0  3
  AMP PEAK  6(4Q12) WILD-TYPE 37  2 18
D6V5, multiclass
    clus
vv   AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  M0                         3                          37
  M1                         0                           2
  MX                         3                          18
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  6(4Q12) MUTATED                                  7
  AMP PEAK  6(4Q12) WILD-TYPE                               51
                             vv
clus                          ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  6(4Q12) MUTATED                                               1
  AMP PEAK  6(4Q12) WILD-TYPE                                             0
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  6(4Q12) MUTATED                                     0
  AMP PEAK  6(4Q12) WILD-TYPE                                   8
                             vv
clus                          ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  6(4Q12) MUTATED                                           0
  AMP PEAK  6(4Q12) WILD-TYPE                                         1
D6V6, multiclass
                                               clus
vv                                              AMP PEAK  6(4Q12) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                      7
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                         1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                   0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                             0
                                               clus
vv                                              AMP PEAK  6(4Q12) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                       51
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               1
D6V7, binary
                             cls
clus                           0  1
  AMP PEAK  6(4Q12) MUTATED    3  5
  AMP PEAK  6(4Q12) WILD-TYPE 11 49
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  6(4Q12) MUTATED      3    5
  AMP PEAK  6(4Q12) WILD-TYPE   11   49
     clus
vv    AMP PEAK  6(4Q12) MUTATED AMP PEAK  6(4Q12) WILD-TYPE
  NO                          3                          11
  YES                         5                          49
D6V8, continuous
D6V9, continuous

Clustering(7) Variable = AMP PEAK  7(6P21.33) MUTATION ANALYSIS
D7V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  7(6P21.33) MUTATED   15  3
  AMP PEAK  7(6P21.33) WILD-TYPE 41  7
  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                            18                             48 
  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                             3                              7 
$`AMP PEAK  7(6P21.33) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MI TCGA-C5-A2LY 
       49.48        30.41        11.44         5.46        35.61        78.31 
TCGA-DS-A0VM TCGA-EA-A439 TCGA-EA-A43B TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A57G 
       69.93         0.66         1.78         1.22         1.22         1.02 
TCGA-HG-A2PA TCGA-IR-A3LF TCGA-IR-A3LH TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MY-A5BD 
       25.41        96.92        78.67         0.10         0.07        29.72 

$`AMP PEAK  7(6P21.33) WILD-TYPE`
TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN 
       36.56       177.04        67.46        53.13         2.43        40.93 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A3LQ 
       87.75        58.88        36.76         2.66        95.08         6.02 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.84         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.30         0.33         0.26        16.44         7.92         6.94 
TCGA-EX-A449 TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.12         0.99         2.17         0.07         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-HM-A3JJ 
        1.58         1.48         0.79         3.48         1.35        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       20.78         8.02       147.35       124.27        66.81       117.40 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AW TCGA-MY-A5BE TCGA-MY-A5BF 
       81.96        26.56        36.36         0.89         0.07         4.34 

  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                          0.07                           0.07 
  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                         96.92                         177.04 
  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE 
                        18.425                          5.180 
[1] "0.1 - 96.9 (18.4)" "0.1 - 177.0 (5.2)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  7(6P21.33) WILD-TYPE"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK  7(6P21.33) MUTATED" "AMP PEAK  7(6P21.33) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "AMP PEAK  7(6P21.33) MUTATED"   "AMP PEAK  7(6P21.33) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK  7(6P21.33) WILD-TYPE" "AMP PEAK  7(6P21.33) WILD-TYPE" 
[1] "hr=" "1.1"
D7V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK  7(6P21.33) MUTATED   11        6
  AMP PEAK  7(6P21.33) WILD-TYPE 31       16
D7V3, multiclass
          clus
vv         AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE
  T1                                 11                             31
  T2+T3+T4                            6                             16
D7V4, binary
                                cls
clus                              0  1
  AMP PEAK  7(6P21.33) MUTATED   11  6
  AMP PEAK  7(6P21.33) WILD-TYPE 31 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(6P21.33) MUTATED     11    6
  AMP PEAK  7(6P21.33) WILD-TYPE   31   15
   clus
vv  AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE
  0                           11                             31
  1                            6                             15
                                vv
clus                             M0 M1 MX
  AMP PEAK  7(6P21.33) MUTATED   13  0  4
  AMP PEAK  7(6P21.33) WILD-TYPE 27  2 17
D7V5, multiclass
    clus
vv   AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE
  M0                           13                             27
  M1                            0                              2
  MX                            4                             17
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  7(6P21.33) MUTATED                                 17
  AMP PEAK  7(6P21.33) WILD-TYPE                               41
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  7(6P21.33) MUTATED                                               1
  AMP PEAK  7(6P21.33) WILD-TYPE                                             0
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  7(6P21.33) MUTATED                                     1
  AMP PEAK  7(6P21.33) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  7(6P21.33) MUTATED                                           0
  AMP PEAK  7(6P21.33) WILD-TYPE                                         1
D7V6, multiclass
                                               clus
vv                                              AMP PEAK  7(6P21.33) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        17
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              AMP PEAK  7(6P21.33) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          41
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D7V7, binary
                                cls
clus                              0  1
  AMP PEAK  7(6P21.33) MUTATED    4 15
  AMP PEAK  7(6P21.33) WILD-TYPE 10 39
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(6P21.33) MUTATED      4   15
  AMP PEAK  7(6P21.33) WILD-TYPE   10   39
     clus
vv    AMP PEAK  7(6P21.33) MUTATED AMP PEAK  7(6P21.33) WILD-TYPE
  NO                             4                             10
  YES                           15                             39
D7V8, continuous
D7V9, continuous

Clustering(8) Variable = AMP PEAK  8(8Q24.21) MUTATION ANALYSIS
D8V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  8(8Q24.21) MUTATED   24  4
  AMP PEAK  8(8Q24.21) WILD-TYPE 32  6
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                            28                             38 
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                             4                              6 
$`AMP PEAK  8(8Q24.21) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK 
       30.41       177.04        67.46        53.13        35.61         2.43 
TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ 
       87.75         2.66        69.93         6.02         0.26         1.74 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI 
        0.33         0.26         1.22         1.22         0.07         1.45 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-IR-A3LA TCGA-IR-A3LK TCGA-IR-A3LL 
        3.48         1.35         1.02       124.27        26.56        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BF 
        0.10         0.89         0.07         4.34 

$`AMP PEAK  8(8Q24.21) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1MN TCGA-C5-A2LY 
       49.48        11.44        36.56         5.46        40.93        78.31 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A3HR TCGA-EA-A3HS 
       58.88        36.76        95.08         6.84         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.62         0.66         1.78         0.30        16.44         7.92 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TQ 
        6.94         1.12         0.99         2.17         1.02         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        1.48         0.79        25.41        21.67        20.78         8.02 
TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      147.35        66.81       117.40        96.92        78.67        81.96 
TCGA-MY-A5BD TCGA-MY-A5BE 
       29.72         0.07 

  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                          0.07                           0.07 
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                        177.04                         147.35 
  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE 
                         2.545                          9.730 
[1] "0.1 - 177.0 (2.5)" "0.1 - 147.3 (9.7)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK  8(8Q24.21) WILD-TYPE"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  8(8Q24.21) WILD-TYPE"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK  8(8Q24.21) WILD-TYPE"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK  8(8Q24.21) WILD-TYPE"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  8(8Q24.21) WILD-TYPE"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK  8(8Q24.21) WILD-TYPE"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK  8(8Q24.21) WILD-TYPE"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  8(8Q24.21) WILD-TYPE"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK  8(8Q24.21) WILD-TYPE" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK  8(8Q24.21) MUTATED"   "AMP PEAK  8(8Q24.21) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "AMP PEAK  8(8Q24.21) MUTATED" "AMP PEAK  8(8Q24.21) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK  8(8Q24.21) WILD-TYPE"   "AMP PEAK  8(8Q24.21) MUTATED" 
[1] "hr=" "1.1"
D8V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK  8(8Q24.21) MUTATED   20        7
  AMP PEAK  8(8Q24.21) WILD-TYPE 22       15
D8V3, multiclass
          clus
vv         AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  T1                                 20                             22
  T2+T3+T4                            7                             15
D8V4, binary
                                cls
clus                              0  1
  AMP PEAK  8(8Q24.21) MUTATED   18  9
  AMP PEAK  8(8Q24.21) WILD-TYPE 24 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(8Q24.21) MUTATED     18    9
  AMP PEAK  8(8Q24.21) WILD-TYPE   24   12
   clus
vv  AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  0                           18                             24
  1                            9                             12
                                vv
clus                             M0 M1 MX
  AMP PEAK  8(8Q24.21) MUTATED   17  0 10
  AMP PEAK  8(8Q24.21) WILD-TYPE 23  2 11
D8V5, multiclass
    clus
vv   AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  M0                           17                             23
  M1                            0                              2
  MX                           10                             11
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  8(8Q24.21) MUTATED                                 24
  AMP PEAK  8(8Q24.21) WILD-TYPE                               34
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  8(8Q24.21) MUTATED                                               0
  AMP PEAK  8(8Q24.21) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  8(8Q24.21) MUTATED                                     3
  AMP PEAK  8(8Q24.21) WILD-TYPE                                   5
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  8(8Q24.21) MUTATED                                           1
  AMP PEAK  8(8Q24.21) WILD-TYPE                                         0
D8V6, multiclass
                                               clus
vv                                              AMP PEAK  8(8Q24.21) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        24
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      3
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                1
                                               clus
vv                                              AMP PEAK  8(8Q24.21) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          34
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        5
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  0
D8V7, binary
                                cls
clus                              0  1
  AMP PEAK  8(8Q24.21) MUTATED    4 24
  AMP PEAK  8(8Q24.21) WILD-TYPE 10 30
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(8Q24.21) MUTATED      4   24
  AMP PEAK  8(8Q24.21) WILD-TYPE   10   30
     clus
vv    AMP PEAK  8(8Q24.21) MUTATED AMP PEAK  8(8Q24.21) WILD-TYPE
  NO                             4                             10
  YES                           24                             30
D8V8, continuous
D8V9, continuous

Clustering(9) Variable = AMP PEAK  9(9P24.1) MUTATION ANALYSIS
D9V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  9(9P24.1) MUTATED   12  0
  AMP PEAK  9(9P24.1) WILD-TYPE 44 10
  AMP PEAK  9(9P24.1) MUTATED AMP PEAK  9(9P24.1) WILD-TYPE 
                           12                            54 
  AMP PEAK  9(9P24.1) MUTATED AMP PEAK  9(9P24.1) WILD-TYPE 
                            0                            10 
$`AMP PEAK  9(9P24.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EX-A3L1 
       49.48       177.04        69.93         6.02         6.84         6.94 
TCGA-FU-A23K TCGA-FU-A40J TCGA-IR-A3LH TCGA-IR-A3LL TCGA-LP-A4AU TCGA-MY-A5BE 
        1.22         1.35        78.67        36.36         0.10         0.07 

$`AMP PEAK  9(9P24.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       30.41        11.44        36.56         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       36.76         2.66        95.08         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        0.82         0.62         0.66         1.78         0.30         0.33 
TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23L TCGA-FU-A2QG 
        0.26        16.44         7.92         1.12         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.07         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        0.79         3.48         1.02        25.41        21.67        20.78 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
        8.02       147.35       124.27        66.81       117.40        96.92 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BF 
       81.96        26.56         0.89         0.07        29.72         4.34 

  AMP PEAK  9(9P24.1) MUTATED AMP PEAK  9(9P24.1) WILD-TYPE 
                         0.07                          0.07 
  AMP PEAK  9(9P24.1) MUTATED AMP PEAK  9(9P24.1) WILD-TYPE 
                       177.04                        147.35 
  AMP PEAK  9(9P24.1) MUTATED AMP PEAK  9(9P24.1) WILD-TYPE 
                         6.89                          4.90 
[1] "0.1 - 177.0 (6.9)" "0.1 - 147.3 (4.9)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  9(9P24.1) MUTATED"   "AMP PEAK  9(9P24.1) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  9(9P24.1) WILD-TYPE"   "AMP PEAK  9(9P24.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  9(9P24.1) WILD-TYPE"   "AMP PEAK  9(9P24.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  9(9P24.1) MUTATED"   "AMP PEAK  9(9P24.1) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  9(9P24.1) WILD-TYPE"   "AMP PEAK  9(9P24.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  9(9P24.1) WILD-TYPE"   "AMP PEAK  9(9P24.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK  9(9P24.1) MUTATED"   "AMP PEAK  9(9P24.1) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK  9(9P24.1) WILD-TYPE"   "AMP PEAK  9(9P24.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK  9(9P24.1) WILD-TYPE"   "AMP PEAK  9(9P24.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK  9(9P24.1) WILD-TYPE" "AMP PEAK  9(9P24.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK  9(9P24.1) MUTATED" "AMP PEAK  9(9P24.1) WILD-TYPE" 
[1] "hr="     "2.7e+08"
D9V2, continuous
                               vv
clus                            T1 T2+T3+T4
  AMP PEAK  9(9P24.1) MUTATED    6        6
  AMP PEAK  9(9P24.1) WILD-TYPE 36       16
D9V3, multiclass
          clus
vv         AMP PEAK  9(9P24.1) MUTATED AMP PEAK  9(9P24.1) WILD-TYPE
  T1                                 6                            36
  T2+T3+T4                           6                            16
D9V4, binary
                               cls
clus                             0  1
  AMP PEAK  9(9P24.1) MUTATED    6  6
  AMP PEAK  9(9P24.1) WILD-TYPE 36 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(9P24.1) MUTATED      6    6
  AMP PEAK  9(9P24.1) WILD-TYPE   36   15
   clus
vv  AMP PEAK  9(9P24.1) MUTATED AMP PEAK  9(9P24.1) WILD-TYPE
  0                           6                            36
  1                           6                            15
                               vv
clus                            M0 M1 MX
  AMP PEAK  9(9P24.1) MUTATED    7  0  5
  AMP PEAK  9(9P24.1) WILD-TYPE 33  2 16
D9V5, multiclass
    clus
vv   AMP PEAK  9(9P24.1) MUTATED AMP PEAK  9(9P24.1) WILD-TYPE
  M0                           7                            33
  M1                           0                             2
  MX                           5                            16
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  9(9P24.1) MUTATED                                 11
  AMP PEAK  9(9P24.1) WILD-TYPE                               47
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK  9(9P24.1) MUTATED                                               0
  AMP PEAK  9(9P24.1) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  9(9P24.1) MUTATED                                     1
  AMP PEAK  9(9P24.1) WILD-TYPE                                   7
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK  9(9P24.1) MUTATED                                           0
  AMP PEAK  9(9P24.1) WILD-TYPE                                         1
D9V6, multiclass
                                               clus
vv                                              AMP PEAK  9(9P24.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       11
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               0
                                               clus
vv                                              AMP PEAK  9(9P24.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         47
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 1
D9V7, binary
                               cls
clus                             0  1
  AMP PEAK  9(9P24.1) MUTATED    1 11
  AMP PEAK  9(9P24.1) WILD-TYPE 13 43
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(9P24.1) MUTATED      1   11
  AMP PEAK  9(9P24.1) WILD-TYPE   13   43
     clus
vv    AMP PEAK  9(9P24.1) MUTATED AMP PEAK  9(9P24.1) WILD-TYPE
  NO                            1                            13
  YES                          11                            43
D9V8, continuous
D9V9, continuous

Clustering(10) Variable = AMP PEAK 10(9P24.1) MUTATION ANALYSIS
D10V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 10(9P24.1) MUTATED   14  0
  AMP PEAK 10(9P24.1) WILD-TYPE 42 10
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                           14                            52 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                            0                            10 
$`AMP PEAK 10(9P24.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT 
       49.48       177.04        69.93         6.02         6.84         0.26 
TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A3TX TCGA-FU-A40J TCGA-IR-A3LH TCGA-IR-A3LL 
        6.94         1.22         1.48         1.35        78.67        36.36 
TCGA-LP-A4AU TCGA-MY-A5BE 
        0.10         0.07 

$`AMP PEAK 10(9P24.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       30.41        11.44        36.56         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
       36.76         2.66        95.08         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        0.62         0.66         1.78         0.30         0.33         0.26 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
       16.44         7.92         1.12         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.07         1.02         1.45         1.58         0.79         3.48 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.02        25.41        21.67        20.78         8.02       147.35 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK 
      124.27        66.81       117.40        96.92        81.96        26.56 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BF 
        0.89         0.07        29.72         4.34 

  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                         0.07                          0.07 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                       177.04                        147.35 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                         6.43                          6.69 
[1] "0.1 - 177.0 (6.4)" "0.1 - 147.3 (6.7)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK 10(9P24.1) MUTATED"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK 10(9P24.1) MUTATED"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "AMP PEAK 10(9P24.1) MUTATED"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
[1] "hr="     "2.7e+08"
D10V2, continuous
                               vv
clus                            T1 T2+T3+T4
  AMP PEAK 10(9P24.1) MUTATED    8        6
  AMP PEAK 10(9P24.1) WILD-TYPE 34       16
D10V3, multiclass
          clus
vv         AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  T1                                 8                            34
  T2+T3+T4                           6                            16
D10V4, binary
                               cls
clus                             0  1
  AMP PEAK 10(9P24.1) MUTATED    8  6
  AMP PEAK 10(9P24.1) WILD-TYPE 34 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(9P24.1) MUTATED      8    6
  AMP PEAK 10(9P24.1) WILD-TYPE   34   15
   clus
vv  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  0                           8                            34
  1                           6                            15
                               vv
clus                            M0 M1 MX
  AMP PEAK 10(9P24.1) MUTATED    9  0  5
  AMP PEAK 10(9P24.1) WILD-TYPE 31  2 16
D10V5, multiclass
    clus
vv   AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  M0                           9                            31
  M1                           0                             2
  MX                           5                            16
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 10(9P24.1) MUTATED                                 13
  AMP PEAK 10(9P24.1) WILD-TYPE                               45
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 10(9P24.1) MUTATED                                               0
  AMP PEAK 10(9P24.1) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 10(9P24.1) MUTATED                                     1
  AMP PEAK 10(9P24.1) WILD-TYPE                                   7
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 10(9P24.1) MUTATED                                           0
  AMP PEAK 10(9P24.1) WILD-TYPE                                         1
D10V6, multiclass
                                               clus
vv                                              AMP PEAK 10(9P24.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       13
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               0
                                               clus
vv                                              AMP PEAK 10(9P24.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         45
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 1
D10V7, binary
                               cls
clus                             0  1
  AMP PEAK 10(9P24.1) MUTATED    1 13
  AMP PEAK 10(9P24.1) WILD-TYPE 13 41
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(9P24.1) MUTATED      1   13
  AMP PEAK 10(9P24.1) WILD-TYPE   13   41
     clus
vv    AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  NO                            1                            13
  YES                          13                            41
D10V8, continuous
D10V9, continuous

Clustering(11) Variable = AMP PEAK 11(11P13) MUTATION ANALYSIS
D11V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 11(11P13) MUTATED    1  1
  AMP PEAK 11(11P13) WILD-TYPE 55  9
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           2                           64 
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           1                            9 
$`AMP PEAK 11(11P13) MUTATED`
TCGA-C5-A1BN TCGA-FU-A40J 
        5.46         1.35 

$`AMP PEAK 11(11P13) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 
       49.48        30.41        11.44        36.56       177.04        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       53.13        35.61         2.43        40.93        78.31        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66        69.93        95.08         6.02 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.84         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 
        0.66         1.78         0.30         0.33         0.26        16.44 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
        7.92         6.94         1.12         1.22         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.07         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        0.79         3.48         1.02        25.41        21.67        20.78 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
        8.02       147.35       124.27        66.81       117.40        96.92 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW 
       78.67        81.96        26.56        36.36         0.10         0.89 
TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07        29.72         0.07         4.34 

  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                        1.35                         0.07 
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                        5.46                       177.04 
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                       3.405                        6.890 
[1] "1.4 - 5.5 (3.4)"   "0.1 - 177.0 (6.9)"
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"AMP PEAK 11(11P13) WILD-TYPE"   "AMP PEAK 11(11P13) MUTATED" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
[1] "Remove cluster labels:"     "AMP PEAK 11(11P13) MUTATED"
clus
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           2                           64 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1M5 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MK                   TCGA-C5-A1MN 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A2LY                   TCGA-DR-A0ZL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DR-A0ZM                   TCGA-DS-A0VK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VL                   TCGA-DS-A0VM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VN                   TCGA-DS-A3LQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A5RQ                   TCGA-EA-A1QT 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HQ                   TCGA-EA-A3HR 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HS                   TCGA-EA-A3HT 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EX-A1H5 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A449                   TCGA-FU-A23K 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A23L                   TCGA-FU-A2QG 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3EO                   TCGA-FU-A3HY 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HZ                   TCGA-FU-A3NI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3TQ                   TCGA-FU-A3TX 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
D11V2, continuous
                              vv
clus                           T1 T2+T3+T4
  AMP PEAK 11(11P13) MUTATED    0        1
  AMP PEAK 11(11P13) WILD-TYPE 42       21
D11V3, multiclass
[1] "Remove cluster labels:"     "AMP PEAK 11(11P13) MUTATED"
clus
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           1                           63 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1M5 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A2LY                   TCGA-DR-A0ZL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DR-A0ZM                   TCGA-DS-A0VK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VL                   TCGA-DS-A0VM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VN                   TCGA-DS-A3LQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A5RQ                   TCGA-EA-A1QT 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HQ                   TCGA-EA-A3HR 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HS                   TCGA-EA-A3HT 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EX-A1H5 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A449                   TCGA-FU-A23K 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A23L                   TCGA-FU-A2QG 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3EO                   TCGA-FU-A3HY 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HZ                   TCGA-FU-A3NI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3TQ                   TCGA-FU-A3TX 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AV 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AW                   TCGA-LP-A4AX 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MY-A5BD                   TCGA-MY-A5BE 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MY-A5BF 
"AMP PEAK 11(11P13) WILD-TYPE" 
D11V4, binary
                              cls
clus                            0  1
  AMP PEAK 11(11P13) MUTATED    0  1
  AMP PEAK 11(11P13) WILD-TYPE 42 20
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 11(11P13) MUTATED      0    1
  AMP PEAK 11(11P13) WILD-TYPE   42   20
   clus
vv  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE
  0                          0                           42
  1                          1                           20
                              vv
clus                           M0 M1 MX
  AMP PEAK 11(11P13) MUTATED    0  0  1
  AMP PEAK 11(11P13) WILD-TYPE 40  2 20
D11V5, multiclass
[1] "Remove cluster labels:"     "AMP PEAK 11(11P13) MUTATED"
clus
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           1                           62 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1M5 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A2LY                   TCGA-DR-A0ZL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DR-A0ZM                   TCGA-DS-A0VK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VL                   TCGA-DS-A0VM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VN                   TCGA-DS-A3LQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A5RQ                   TCGA-EA-A1QT 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HQ                   TCGA-EA-A3HR 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HS                   TCGA-EA-A3HT 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A439                   TCGA-EA-A43B 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EX-A1H5 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A449                   TCGA-FU-A23K 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A23L                   TCGA-FU-A3EO 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A57G 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HG-A2PA                   TCGA-HM-A3JJ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A3JK                   TCGA-HM-A4S6 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3L7                   TCGA-IR-A3LA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LB                   TCGA-IR-A3LC 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LF                   TCGA-IR-A3LH 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LI                   TCGA-IR-A3LK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LL                   TCGA-LP-A4AU 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AV                   TCGA-LP-A4AW 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                              vv
clus                           CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 11(11P13) MUTATED                                  2
  AMP PEAK 11(11P13) WILD-TYPE                               56
                              vv
clus                           ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 11(11P13) MUTATED                                               0
  AMP PEAK 11(11P13) WILD-TYPE                                             1
                              vv
clus                           ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 11(11P13) MUTATED                                     1
  AMP PEAK 11(11P13) WILD-TYPE                                   7
                              vv
clus                           ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 11(11P13) MUTATED                                           0
  AMP PEAK 11(11P13) WILD-TYPE                                         1
D11V6, multiclass
                                               clus
vv                                              AMP PEAK 11(11P13) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       2
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                          0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                    1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                              0
                                               clus
vv                                              AMP PEAK 11(11P13) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                        56
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                1
D11V7, binary
                              cls
clus                            0  1
  AMP PEAK 11(11P13) MUTATED    1  2
  AMP PEAK 11(11P13) WILD-TYPE 13 52
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 11(11P13) MUTATED      1    2
  AMP PEAK 11(11P13) WILD-TYPE   13   52
     clus
vv    AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE
  NO                           1                           13
  YES                          2                           52
D11V8, continuous
[1] "Remove cluster labels:"     "AMP PEAK 11(11P13) MUTATED"
clus
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           1                           18 
                  TCGA-BI-A0VR                   TCGA-C5-A1BI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MI 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-DR-A0ZM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A5RQ                   TCGA-EX-A1H5 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3TQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LB                   TCGA-IR-A3LH 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
D11V9, continuous
[1] "Remove cluster labels:"     "AMP PEAK 11(11P13) MUTATED"
clus
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           1                           56 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A2LY 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A43B 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A44S                   TCGA-EA-A4BA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EA-A50E                   TCGA-EX-A1H5 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-EX-A1H6                   TCGA-EX-A3L1 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A57G 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HG-A2PA                   TCGA-HM-A3JJ 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-HM-A3JK                   TCGA-HM-A4S6 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3L7                   TCGA-IR-A3LA 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LB                   TCGA-IR-A3LC 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LF                   TCGA-IR-A3LH 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LI                   TCGA-IR-A3LK 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-IR-A3LL                   TCGA-LP-A4AX 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 
                  TCGA-MY-A5BD                   TCGA-MY-A5BF 
"AMP PEAK 11(11P13) WILD-TYPE" "AMP PEAK 11(11P13) WILD-TYPE" 

Clustering(12) Variable = AMP PEAK 12(11Q13.3) MUTATION ANALYSIS
D12V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 12(11Q13.3) MUTATED    6  2
  AMP PEAK 12(11Q13.3) WILD-TYPE 50  8
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             8                             58 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             2                              8 
$`AMP PEAK 12(11Q13.3) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MF TCGA-EA-A1QT TCGA-FU-A40J TCGA-IR-A3LA 
       11.44         5.46        53.13         0.26         1.35       124.27 
TCGA-IR-A3LH TCGA-LP-A4AX 
       78.67         0.07 

$`AMP PEAK 12(11Q13.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MI 
       49.48        30.41        36.56       177.04        67.46        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ 
        2.66        69.93        95.08         6.02         6.84         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S 
        1.32         0.82         0.62         0.66         1.78         0.30 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.33         0.26        16.44         7.92         6.94         1.12 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.22         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G 
        1.45         1.58         1.48         0.79         3.48         1.02 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LB 
       25.41        21.67        20.78         8.02       147.35        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU 
      117.40        96.92        81.96        26.56        36.36         0.10 
TCGA-LP-A4AW TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.89        29.72         0.07         4.34 

  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                          0.07                           0.07 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                        124.27                         177.04 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                          8.45                           6.43 
[1] "0.1 - 124.3 (8.4)" "0.1 - 177.0 (6.4)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "AMP PEAK 12(11Q13.3) MUTATED" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
[1] "hr=" "1.5"
D12V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK 12(11Q13.3) MUTATED    5        2
  AMP PEAK 12(11Q13.3) WILD-TYPE 37       20
D12V3, multiclass
          clus
vv         AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  T1                                  5                             37
  T2+T3+T4                            2                             20
D12V4, binary
                                cls
clus                              0  1
  AMP PEAK 12(11Q13.3) MUTATED    5  2
  AMP PEAK 12(11Q13.3) WILD-TYPE 37 19
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(11Q13.3) MUTATED      5    2
  AMP PEAK 12(11Q13.3) WILD-TYPE   37   19
   clus
vv  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  0                            5                             37
  1                            2                             19
                                vv
clus                             M0 M1 MX
  AMP PEAK 12(11Q13.3) MUTATED    4  0  3
  AMP PEAK 12(11Q13.3) WILD-TYPE 36  2 18
D12V5, multiclass
    clus
vv   AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  M0                            4                             36
  M1                            0                              2
  MX                            3                             18
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 12(11Q13.3) MUTATED                                  7
  AMP PEAK 12(11Q13.3) WILD-TYPE                               51
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 12(11Q13.3) MUTATED                                               0
  AMP PEAK 12(11Q13.3) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 12(11Q13.3) MUTATED                                     1
  AMP PEAK 12(11Q13.3) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 12(11Q13.3) MUTATED                                           1
  AMP PEAK 12(11Q13.3) WILD-TYPE                                         0
D12V6, multiclass
                                               clus
vv                                              AMP PEAK 12(11Q13.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                         7
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                1
                                               clus
vv                                              AMP PEAK 12(11Q13.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          51
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  0
D12V7, binary
                                cls
clus                              0  1
  AMP PEAK 12(11Q13.3) MUTATED    3  6
  AMP PEAK 12(11Q13.3) WILD-TYPE 11 48
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(11Q13.3) MUTATED      3    6
  AMP PEAK 12(11Q13.3) WILD-TYPE   11   48
     clus
vv    AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  NO                             3                             11
  YES                            6                             48
D12V8, continuous
D12V9, continuous

Clustering(13) Variable = AMP PEAK 13(11Q22.1) MUTATION ANALYSIS
D13V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 13(11Q22.1) MUTATED    9  4
  AMP PEAK 13(11Q22.1) WILD-TYPE 47  6
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                            13                             53 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                             4                              6 
$`AMP PEAK 13(11Q22.1) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK 
       11.44       177.04         5.46        78.31        87.75        36.76 
TCGA-DS-A0VL TCGA-EA-A43B TCGA-EX-A3L1 TCGA-FU-A40J TCGA-HM-A3JJ TCGA-IR-A3LH 
        2.66         1.78         6.94         1.35        21.67        78.67 
TCGA-LP-A4AX 
        0.07 

$`AMP PEAK 13(11Q22.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41        36.56        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DR-A0ZM TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
        2.43        40.93        58.88        69.93        95.08         6.02 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.84         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.66         0.30         0.33         0.26        16.44         7.92 
TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        1.12         1.22         1.22         0.99         2.17         0.07 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.79         3.48 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA 
        1.02        25.41        20.78         8.02       147.35       124.27 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
       66.81       117.40        96.92        81.96        26.56        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.10         0.89        29.72         0.07         4.34 

  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                          0.07                           0.07 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                        177.04                         147.35 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                         11.44                           4.34 
[1] "0.1 - 177.0 (11.4)" "0.1 - 147.3 (4.3)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
[1] "hr=" "1.9"
D13V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK 13(11Q22.1) MUTATED    9        3
  AMP PEAK 13(11Q22.1) WILD-TYPE 33       19
D13V3, multiclass
          clus
vv         AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  T1                                  9                             33
  T2+T3+T4                            3                             19
D13V4, binary
                                cls
clus                              0  1
  AMP PEAK 13(11Q22.1) MUTATED    8  4
  AMP PEAK 13(11Q22.1) WILD-TYPE 34 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q22.1) MUTATED      8    4
  AMP PEAK 13(11Q22.1) WILD-TYPE   34   17
   clus
vv  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  0                            8                             34
  1                            4                             17
                                vv
clus                             M0 M1 MX
  AMP PEAK 13(11Q22.1) MUTATED    8  0  4
  AMP PEAK 13(11Q22.1) WILD-TYPE 32  2 17
D13V5, multiclass
    clus
vv   AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  M0                            8                             32
  M1                            0                              2
  MX                            4                             17
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 13(11Q22.1) MUTATED                                 12
  AMP PEAK 13(11Q22.1) WILD-TYPE                               46
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 13(11Q22.1) MUTATED                                               0
  AMP PEAK 13(11Q22.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 13(11Q22.1) MUTATED                                     1
  AMP PEAK 13(11Q22.1) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 13(11Q22.1) MUTATED                                           0
  AMP PEAK 13(11Q22.1) WILD-TYPE                                         1
D13V6, multiclass
                                               clus
vv                                              AMP PEAK 13(11Q22.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        12
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              AMP PEAK 13(11Q22.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          46
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D13V7, binary
                                cls
clus                              0  1
  AMP PEAK 13(11Q22.1) MUTATED    4  9
  AMP PEAK 13(11Q22.1) WILD-TYPE 10 45
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q22.1) MUTATED      4    9
  AMP PEAK 13(11Q22.1) WILD-TYPE   10   45
     clus
vv    AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  NO                             4                             10
  YES                            9                             45
D13V8, continuous
[1] "Remove cluster labels:"       "AMP PEAK 13(11Q22.1) MUTATED"
clus
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                             2                             17 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-DR-A0ZM 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A5RQ                     TCGA-EX-A1H5 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3TQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LB 
"AMP PEAK 13(11Q22.1) WILD-TYPE" 
D13V9, continuous

Clustering(14) Variable = AMP PEAK 14(13Q22.1) MUTATION ANALYSIS
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(13Q22.1) MUTATED    9  3
  AMP PEAK 14(13Q22.1) WILD-TYPE 47  7
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                            12                             54 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                             3                              7 
$`AMP PEAK 14(13Q22.1) MUTATED`
TCGA-C5-A1BN TCGA-DS-A0VM TCGA-EA-A3HT TCGA-EA-A44S TCGA-EA-A50E TCGA-FU-A3HY 
        5.46        69.93         0.62         0.30         0.26         0.07 
TCGA-FU-A40J TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LK TCGA-LP-A4AW TCGA-MY-A5BE 
        1.35       147.35        66.81        26.56         0.89         0.07 

$`AMP PEAK 14(13Q22.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 
       49.48        30.41        11.44        36.56       177.04        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       53.13        35.61         2.43        40.93        78.31        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ 
       58.88        36.76         2.66        95.08         6.02         6.84 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A439 TCGA-EA-A43B 
        0.26         1.74         1.32         0.82         0.66         1.78 
TCGA-EA-A4BA TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K 
        0.33        16.44         7.92         6.94         1.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        1.22         0.99         2.17         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.48         0.79         3.48         1.02        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
       20.78         8.02       124.27       117.40        96.92        78.67 
TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BF 
       81.96        36.36         0.10         0.07        29.72         4.34 

  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                          0.07                           0.07 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                        147.35                         177.04 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                          1.12                           7.43 
[1] "0.1 - 147.3 (1.1)" "0.1 - 177.0 (7.4)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
[1] "hr=" "2.2"
D14V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK 14(13Q22.1) MUTATED    8        3
  AMP PEAK 14(13Q22.1) WILD-TYPE 34       19
D14V3, multiclass
          clus
vv         AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  T1                                  8                             34
  T2+T3+T4                            3                             19
D14V4, binary
                                cls
clus                              0  1
  AMP PEAK 14(13Q22.1) MUTATED    6  5
  AMP PEAK 14(13Q22.1) WILD-TYPE 36 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q22.1) MUTATED      6    5
  AMP PEAK 14(13Q22.1) WILD-TYPE   36   16
   clus
vv  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  0                            6                             36
  1                            5                             16
                                vv
clus                             M0 M1 MX
  AMP PEAK 14(13Q22.1) MUTATED    8  0  3
  AMP PEAK 14(13Q22.1) WILD-TYPE 32  2 18
D14V5, multiclass
    clus
vv   AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  M0                            8                             32
  M1                            0                              2
  MX                            3                             18
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 14(13Q22.1) MUTATED                                 10
  AMP PEAK 14(13Q22.1) WILD-TYPE                               48
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 14(13Q22.1) MUTATED                                               0
  AMP PEAK 14(13Q22.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 14(13Q22.1) MUTATED                                     2
  AMP PEAK 14(13Q22.1) WILD-TYPE                                   6
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 14(13Q22.1) MUTATED                                           0
  AMP PEAK 14(13Q22.1) WILD-TYPE                                         1
D14V6, multiclass
                                               clus
vv                                              AMP PEAK 14(13Q22.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        10
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      2
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              AMP PEAK 14(13Q22.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          48
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        6
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D14V7, binary
                                cls
clus                              0  1
  AMP PEAK 14(13Q22.1) MUTATED    1 11
  AMP PEAK 14(13Q22.1) WILD-TYPE 13 43
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q22.1) MUTATED      1   11
  AMP PEAK 14(13Q22.1) WILD-TYPE   13   43
     clus
vv    AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  NO                             1                             13
  YES                           11                             43
D14V8, continuous
D14V9, continuous

Clustering(15) Variable = AMP PEAK 15(14Q24.1) MUTATION ANALYSIS
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(14Q24.1) MUTATED    9  1
  AMP PEAK 15(14Q24.1) WILD-TYPE 47  9
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                            10                             56 
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                             1                              9 
$`AMP PEAK 15(14Q24.1) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1MI TCGA-EA-A3HQ TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A3L1 
       30.41        35.61         1.74         0.66         1.78         6.94 
TCGA-FU-A3HY TCGA-FU-A3NI TCGA-IR-A3L7 TCGA-MY-A5BD 
        0.07         1.45       147.35        29.72 

$`AMP PEAK 15(14Q24.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        11.44        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       53.13         2.43        40.93        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ 
       36.76         2.66        69.93        95.08         6.02         6.84 
TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A44S TCGA-EA-A4BA 
        0.26         1.32         0.82         0.62         0.30         0.33 
TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L 
        0.26        16.44         7.92         1.12         1.22         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        0.99         2.17         1.02         1.58         1.48         0.79 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        3.48         1.35         1.02        25.41        21.67        20.78 
TCGA-HM-A4S6 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
        8.02       124.27        66.81       117.40        96.92        78.67 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       81.96        26.56        36.36         0.10         0.89         0.07 
TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07         4.34 

  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                          0.07                           0.07 
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                        147.35                         177.04 
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                          4.36                           6.43 
[1] "0.1 - 147.3 (4.4)" "0.1 - 177.0 (6.4)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
[1] "hr=" "1.1"
D15V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK 15(14Q24.1) MUTATED    6        4
  AMP PEAK 15(14Q24.1) WILD-TYPE 36       18
D15V3, multiclass
          clus
vv         AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE
  T1                                  6                             36
  T2+T3+T4                            4                             18
D15V4, binary
                                cls
clus                              0  1
  AMP PEAK 15(14Q24.1) MUTATED    7  3
  AMP PEAK 15(14Q24.1) WILD-TYPE 35 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(14Q24.1) MUTATED      7    3
  AMP PEAK 15(14Q24.1) WILD-TYPE   35   18
   clus
vv  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE
  0                            7                             35
  1                            3                             18
                                vv
clus                             M0 M1 MX
  AMP PEAK 15(14Q24.1) MUTATED    8  0  2
  AMP PEAK 15(14Q24.1) WILD-TYPE 32  2 19
D15V5, multiclass
    clus
vv   AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE
  M0                            8                             32
  M1                            0                              2
  MX                            2                             19
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 15(14Q24.1) MUTATED                                 11
  AMP PEAK 15(14Q24.1) WILD-TYPE                               47
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 15(14Q24.1) MUTATED                                               0
  AMP PEAK 15(14Q24.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 15(14Q24.1) MUTATED                                     0
  AMP PEAK 15(14Q24.1) WILD-TYPE                                   8
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 15(14Q24.1) MUTATED                                           0
  AMP PEAK 15(14Q24.1) WILD-TYPE                                         1
D15V6, multiclass
                                               clus
vv                                              AMP PEAK 15(14Q24.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        11
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              AMP PEAK 15(14Q24.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          47
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D15V7, binary
                                cls
clus                              0  1
  AMP PEAK 15(14Q24.1) MUTATED    1 10
  AMP PEAK 15(14Q24.1) WILD-TYPE 13 44
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(14Q24.1) MUTATED      1   10
  AMP PEAK 15(14Q24.1) WILD-TYPE   13   44
     clus
vv    AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE
  NO                             1                             13
  YES                           10                             44
D15V8, continuous
D15V9, continuous

Clustering(16) Variable = AMP PEAK 16(15Q26.1) MUTATION ANALYSIS
D16V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 16(15Q26.1) MUTATED   12  1
  AMP PEAK 16(15Q26.1) WILD-TYPE 44  9
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                            13                             53 
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                             1                              9 
$`AMP PEAK 16(15Q26.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1MK TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-EA-A3HQ 
       49.48       177.04         2.43        87.75         2.66         1.74 
TCGA-EA-A50E TCGA-EX-A3L1 TCGA-FU-A23L TCGA-HM-A3JK TCGA-IR-A3LA TCGA-LP-A4AU 
        0.26         6.94         1.22        20.78       124.27         0.10 
TCGA-MY-A5BE 
        0.07 

$`AMP PEAK 16(15Q26.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       30.41        11.44        36.56         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM 
       35.61        40.93        78.31        58.88        36.76        69.93 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS 
       95.08         6.02         6.84         0.26         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EX-A1H5 
        0.62         0.66         1.78         0.30         0.33        16.44 
TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        7.92         1.12         1.22         0.99         2.17         0.07 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.79         3.48 
TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.35         1.02        25.41        21.67         8.02       147.35 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       66.81       117.40        96.92        78.67        81.96        26.56 
TCGA-IR-A3LL TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BF 
       36.36         0.89         0.07        29.72         4.34 

  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                          0.07                           0.07 
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                        177.04                         147.35 
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                          2.66                           6.84 
[1] "0.1 - 177.0 (2.7)" "0.1 - 147.3 (6.8)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 16(15Q26.1) WILD-TYPE"   "AMP PEAK 16(15Q26.1) MUTATED" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "AMP PEAK 16(15Q26.1) MUTATED" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
[1] "hr=" "2.3"
D16V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK 16(15Q26.1) MUTATED    5        7
  AMP PEAK 16(15Q26.1) WILD-TYPE 37       15
D16V3, multiclass
          clus
vv         AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  T1                                  5                             37
  T2+T3+T4                            7                             15
D16V4, binary
                                cls
clus                              0  1
  AMP PEAK 16(15Q26.1) MUTATED    8  4
  AMP PEAK 16(15Q26.1) WILD-TYPE 34 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) MUTATED      8    4
  AMP PEAK 16(15Q26.1) WILD-TYPE   34   17
   clus
vv  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  0                            8                             34
  1                            4                             17
                                vv
clus                             M0 M1 MX
  AMP PEAK 16(15Q26.1) MUTATED    8  0  4
  AMP PEAK 16(15Q26.1) WILD-TYPE 32  2 17
D16V5, multiclass
    clus
vv   AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  M0                            8                             32
  M1                            0                              2
  MX                            4                             17
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 16(15Q26.1) MUTATED                                 13
  AMP PEAK 16(15Q26.1) WILD-TYPE                               45
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 16(15Q26.1) MUTATED                                               0
  AMP PEAK 16(15Q26.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 16(15Q26.1) MUTATED                                     0
  AMP PEAK 16(15Q26.1) WILD-TYPE                                   8
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 16(15Q26.1) MUTATED                                           1
  AMP PEAK 16(15Q26.1) WILD-TYPE                                         0
D16V6, multiclass
                                               clus
vv                                              AMP PEAK 16(15Q26.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        13
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                1
                                               clus
vv                                              AMP PEAK 16(15Q26.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          45
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  0
D16V7, binary
                                cls
clus                              0  1
  AMP PEAK 16(15Q26.1) MUTATED    2 12
  AMP PEAK 16(15Q26.1) WILD-TYPE 12 42
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) MUTATED      2   12
  AMP PEAK 16(15Q26.1) WILD-TYPE   12   42
     clus
vv    AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE
  NO                             2                             12
  YES                           12                             42
D16V8, continuous
[1] "Remove cluster labels:"       "AMP PEAK 16(15Q26.1) MUTATED"
clus
  AMP PEAK 16(15Q26.1) MUTATED AMP PEAK 16(15Q26.1) WILD-TYPE 
                             1                             18 
                    TCGA-C5-A1BI                     TCGA-C5-A1BN 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-DR-A0ZM 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-DS-A5RQ                     TCGA-EX-A1H5 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3TQ 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
                    TCGA-IR-A3LB                     TCGA-IR-A3LH 
"AMP PEAK 16(15Q26.1) WILD-TYPE" "AMP PEAK 16(15Q26.1) WILD-TYPE" 
D16V9, continuous

Clustering(17) Variable = AMP PEAK 17(16P13.13) MUTATION ANALYSIS
D17V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 17(16P13.13) MUTATED   12  0
  AMP PEAK 17(16P13.13) WILD-TYPE 44 10
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                             12                              54 
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                              0                              10 
$`AMP PEAK 17(16P13.13) MUTATED`
TCGA-BI-A0VS TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A439 TCGA-FU-A23L TCGA-FU-A3EO 
       30.41         6.02         1.74         0.66         1.22         2.17 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A40J TCGA-HM-A3JK TCGA-IR-A3LI 
        1.45         1.58         1.48         1.35        20.78        81.96 

$`AMP PEAK 17(16P13.13) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        11.44        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       53.13        35.61         2.43        40.93        78.31        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ 
       58.88        36.76         2.66        69.93        95.08         6.84 
TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EA-A44S 
        0.26         1.32         0.82         0.62         1.78         0.30 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.33         0.26        16.44         7.92         6.94         1.12 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.22         0.99         0.07         1.02         0.79         3.48 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA 
        1.02        25.41        21.67         8.02       147.35       124.27 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LK TCGA-IR-A3LL 
       66.81       117.40        96.92        78.67        26.56        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.10         0.89         0.07        29.72         0.07         4.34 

  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                           0.66                            0.07 
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                          81.96                          177.04 
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                           1.66                            7.97 
[1] "0.7 - 82.0 (1.7)"  "0.1 - 177.0 (8.0)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 17(16P13.13) MUTATED"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 17(16P13.13) MUTATED"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 17(16P13.13) MUTATED"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
[1] "hr="     "7.6e+07"
D17V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  AMP PEAK 17(16P13.13) MUTATED    3        9
  AMP PEAK 17(16P13.13) WILD-TYPE 39       13
D17V3, multiclass
          clus
vv         AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE
  T1                                   3                              39
  T2+T3+T4                             9                              13
D17V4, binary
                                 cls
clus                               0  1
  AMP PEAK 17(16P13.13) MUTATED    6  6
  AMP PEAK 17(16P13.13) WILD-TYPE 36 15
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(16P13.13) MUTATED      6    6
  AMP PEAK 17(16P13.13) WILD-TYPE   36   15
   clus
vv  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE
  0                             6                              36
  1                             6                              15
                                 vv
clus                              M0 M1 MX
  AMP PEAK 17(16P13.13) MUTATED    5  1  6
  AMP PEAK 17(16P13.13) WILD-TYPE 35  1 15
D17V5, multiclass
    clus
vv   AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE
  M0                             5                              35
  M1                             1                               1
  MX                             6                              15
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 17(16P13.13) MUTATED                                 10
  AMP PEAK 17(16P13.13) WILD-TYPE                               48
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 17(16P13.13) MUTATED                                               0
  AMP PEAK 17(16P13.13) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 17(16P13.13) MUTATED                                     3
  AMP PEAK 17(16P13.13) WILD-TYPE                                   5
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 17(16P13.13) MUTATED                                           0
  AMP PEAK 17(16P13.13) WILD-TYPE                                         1
D17V6, multiclass
                                               clus
vv                                              AMP PEAK 17(16P13.13) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                         10
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       3
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 0
                                               clus
vv                                              AMP PEAK 17(16P13.13) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                           48
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                               1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                         5
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                   1
D17V7, binary
                                 cls
clus                               0  1
  AMP PEAK 17(16P13.13) MUTATED    2 11
  AMP PEAK 17(16P13.13) WILD-TYPE 12 43
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(16P13.13) MUTATED      2   11
  AMP PEAK 17(16P13.13) WILD-TYPE   12   43
     clus
vv    AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE
  NO                              2                              12
  YES                            11                              43
D17V8, continuous
[1] "Remove cluster labels:"        "AMP PEAK 17(16P13.13) MUTATED"
clus
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                              2                              17 
                     TCGA-BI-A0VR                      TCGA-C5-A1BI 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1MF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A5RQ 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-FU-A2QG 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3WB 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-HM-A4S6 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3L7                      TCGA-IR-A3LB 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-IR-A3LH 
"AMP PEAK 17(16P13.13) WILD-TYPE" 
D17V9, continuous

Clustering(18) Variable = AMP PEAK 18(17Q12) MUTATION ANALYSIS
D18V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 18(17Q12) MUTATED    6  1
  AMP PEAK 18(17Q12) WILD-TYPE 50  9
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                           7                           59 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                           1                            9 
$`AMP PEAK 18(17Q12) MUTATED`
TCGA-C5-A1MI TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EX-A3L1 TCGA-FU-A40J 
       35.61        69.93         6.02         1.32         6.94         1.35 
TCGA-LP-A4AU 
        0.10 

$`AMP PEAK 18(17Q12) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       67.46        53.13         2.43        40.93        78.31        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT 
       58.88        36.76         2.66        95.08         6.84         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S 
        1.74         0.82         0.62         0.66         1.78         0.30 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23K 
        0.33         0.26        16.44         7.92         1.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.22         0.99         2.17         0.07         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA 
        1.58         1.48         0.79         3.48         1.02        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       21.67        20.78         8.02       147.35       124.27        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      117.40        96.92        78.67        81.96        26.56        36.36 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.89         0.07        29.72         0.07         4.34 

  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                        0.10                         0.07 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                       69.93                       177.04 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                        6.02                         6.84 
[1] "0.1 - 69.9 (6.0)"  "0.1 - 177.0 (6.8)"
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
[1] "hr=" "1.3"
D18V2, continuous
                              vv
clus                           T1 T2+T3+T4
  AMP PEAK 18(17Q12) MUTATED    2        5
  AMP PEAK 18(17Q12) WILD-TYPE 40       17
D18V3, multiclass
          clus
vv         AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  T1                                2                           40
  T2+T3+T4                          5                           17
D18V4, binary
                              cls
clus                            0  1
  AMP PEAK 18(17Q12) MUTATED    2  5
  AMP PEAK 18(17Q12) WILD-TYPE 40 16
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) MUTATED      2    5
  AMP PEAK 18(17Q12) WILD-TYPE   40   16
   clus
vv  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  0                          2                           40
  1                          5                           16
                              vv
clus                           M0 M1 MX
  AMP PEAK 18(17Q12) MUTATED    6  0  1
  AMP PEAK 18(17Q12) WILD-TYPE 34  2 20
D18V5, multiclass
    clus
vv   AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  M0                          6                           34
  M1                          0                            2
  MX                          1                           20
                              vv
clus                           CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 18(17Q12) MUTATED                                  6
  AMP PEAK 18(17Q12) WILD-TYPE                               52
                              vv
clus                           ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 18(17Q12) MUTATED                                               0
  AMP PEAK 18(17Q12) WILD-TYPE                                             1
                              vv
clus                           ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 18(17Q12) MUTATED                                     1
  AMP PEAK 18(17Q12) WILD-TYPE                                   7
                              vv
clus                           ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 18(17Q12) MUTATED                                           0
  AMP PEAK 18(17Q12) WILD-TYPE                                         1
D18V6, multiclass
                                               clus
vv                                              AMP PEAK 18(17Q12) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       6
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                          0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                    1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                              0
                                               clus
vv                                              AMP PEAK 18(17Q12) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                        52
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                1
D18V7, binary
                              cls
clus                            0  1
  AMP PEAK 18(17Q12) MUTATED    2  5
  AMP PEAK 18(17Q12) WILD-TYPE 12 49
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) MUTATED      2    5
  AMP PEAK 18(17Q12) WILD-TYPE   12   49
     clus
vv    AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  NO                           2                           12
  YES                          5                           49
D18V8, continuous
[1] "Remove cluster labels:"     "AMP PEAK 18(17Q12) MUTATED"
clus
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                           1                           18 
                  TCGA-BI-A0VR                   TCGA-C5-A1BI 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BN                   TCGA-C5-A1MF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-DR-A0ZM 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A5RQ                   TCGA-EX-A1H5 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3TQ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3WB                   TCGA-FU-A3YQ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-IR-A3LB                   TCGA-IR-A3LH 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
D18V9, continuous

Clustering(19) Variable = AMP PEAK 19(17Q25.1) MUTATION ANALYSIS
D19V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 19(17Q25.1) MUTATED   15  2
  AMP PEAK 19(17Q25.1) WILD-TYPE 41  8
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                            17                             49 
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                             2                              8 
$`AMP PEAK 19(17Q25.1) MUTATED`
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-DS-A0VK TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR 
       53.13        35.61        36.76         6.02         1.74         1.32 
TCGA-EA-A439 TCGA-EX-A3L1 TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A40J 
        0.66         6.94         0.07         1.45         1.58         1.35 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-LP-A4AU TCGA-LP-A4AW 
        8.02       147.35       117.40         0.10         0.89 

$`AMP PEAK 19(17Q25.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       67.46         2.43        40.93        78.31        87.75        58.88 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HS 
        2.66        69.93        95.08         6.84         0.26         0.82 
TCGA-EA-A3HT TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 
        0.62         1.78         0.30         0.33         0.26        16.44 
TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        7.92         1.12         1.22         1.22         0.99         2.17 
TCGA-FU-A3HZ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA 
        1.02         1.48         0.79         3.48         1.02        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LH 
       21.67        20.78       124.27        66.81        96.92        78.67 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE 
       81.96        26.56        36.36         0.07        29.72         0.07 
TCGA-MY-A5BF 
        4.34 

  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                          0.07                           0.07 
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                        147.35                         177.04 
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                          1.74                           7.92 
[1] "0.1 - 147.3 (1.7)" "0.1 - 177.0 (7.9)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK 19(17Q25.1) MUTATED"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "AMP PEAK 19(17Q25.1) MUTATED"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK 19(17Q25.1) MUTATED"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK 19(17Q25.1) MUTATED"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "AMP PEAK 19(17Q25.1) MUTATED"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK 19(17Q25.1) MUTATED"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "AMP PEAK 19(17Q25.1) MUTATED"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "AMP PEAK 19(17Q25.1) MUTATED"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "AMP PEAK 19(17Q25.1) MUTATED"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
[1] "hr=" "1"  
D19V2, continuous
                                vv
clus                             T1 T2+T3+T4
  AMP PEAK 19(17Q25.1) MUTATED    9        8
  AMP PEAK 19(17Q25.1) WILD-TYPE 33       14
D19V3, multiclass
          clus
vv         AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE
  T1                                  9                             33
  T2+T3+T4                            8                             14
D19V4, binary
                                cls
clus                              0  1
  AMP PEAK 19(17Q25.1) MUTATED    8  9
  AMP PEAK 19(17Q25.1) WILD-TYPE 34 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q25.1) MUTATED      8    9
  AMP PEAK 19(17Q25.1) WILD-TYPE   34   12
   clus
vv  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE
  0                            8                             34
  1                            9                             12
                                vv
clus                             M0 M1 MX
  AMP PEAK 19(17Q25.1) MUTATED   11  0  6
  AMP PEAK 19(17Q25.1) WILD-TYPE 29  2 15
D19V5, multiclass
    clus
vv   AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE
  M0                           11                             29
  M1                            0                              2
  MX                            6                             15
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 19(17Q25.1) MUTATED                                 17
  AMP PEAK 19(17Q25.1) WILD-TYPE                               41
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 19(17Q25.1) MUTATED                                               0
  AMP PEAK 19(17Q25.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 19(17Q25.1) MUTATED                                     1
  AMP PEAK 19(17Q25.1) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 19(17Q25.1) MUTATED                                           0
  AMP PEAK 19(17Q25.1) WILD-TYPE                                         1
D19V6, multiclass
                                               clus
vv                                              AMP PEAK 19(17Q25.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        17
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              AMP PEAK 19(17Q25.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          41
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D19V7, binary
                                cls
clus                              0  1
  AMP PEAK 19(17Q25.1) MUTATED    3 15
  AMP PEAK 19(17Q25.1) WILD-TYPE 11 39
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q25.1) MUTATED      3   15
  AMP PEAK 19(17Q25.1) WILD-TYPE   11   39
     clus
vv    AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE
  NO                             3                             11
  YES                           15                             39
D19V8, continuous
D19V9, continuous

Clustering(20) Variable = AMP PEAK 20(19Q13.32) MUTATION ANALYSIS
D20V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 20(19Q13.32) MUTATED   15  6
  AMP PEAK 20(19Q13.32) WILD-TYPE 41  4
  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                             21                              45 
  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                              6                               4 
$`AMP PEAK 20(19Q13.32) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY 
       11.44         5.46        53.13        35.61         2.43        78.31 
TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EA-A439 TCGA-EA-A43B TCGA-FU-A23L 
        2.66         6.02         1.32         0.66         1.78         1.22 
TCGA-FU-A3NI TCGA-FU-A40J TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3L7 TCGA-IR-A3LK 
        1.45         1.35        21.67        20.78       147.35        26.56 
TCGA-IR-A3LL TCGA-MY-A5BD TCGA-MY-A5BE 
       36.36        29.72         0.07 

$`AMP PEAK 20(19Q13.32) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MN 
       49.48        30.41        36.56       177.04        67.46        40.93 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ 
       87.75        58.88        36.76        69.93        95.08         6.84 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A44S TCGA-EA-A4BA 
        0.26         1.74         0.82         0.62         0.30         0.33 
TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K 
        0.26        16.44         7.92         6.94         1.12         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        0.99         2.17         0.07         1.02         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A4S6 TCGA-IR-A3LA 
        0.79         3.48         1.02        25.41         8.02       124.27 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-LP-A4AU 
       66.81       117.40        96.92        78.67        81.96         0.10 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BF 
        0.89         0.07         4.34 

  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                           0.07                            0.07 
  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                         147.35                          177.04 
  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE 
                           6.02                            6.84 
[1] "0.1 - 147.3 (6.0)" "0.1 - 177.0 (6.8)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
  "AMP PEAK 20(19Q13.32) MUTATED"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 20(19Q13.32) WILD-TYPE" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"AMP PEAK 20(19Q13.32) WILD-TYPE"   "AMP PEAK 20(19Q13.32) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
  "AMP PEAK 20(19Q13.32) MUTATED" "AMP PEAK 20(19Q13.32) WILD-TYPE" 
[1] "hr=" "4.7"
D20V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  AMP PEAK 20(19Q13.32) MUTATED   12        7
  AMP PEAK 20(19Q13.32) WILD-TYPE 30       15
D20V3, multiclass
          clus
vv         AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE
  T1                                  12                              30
  T2+T3+T4                             7                              15
D20V4, binary
                                 cls
clus                               0  1
  AMP PEAK 20(19Q13.32) MUTATED   12  7
  AMP PEAK 20(19Q13.32) WILD-TYPE 30 14
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 20(19Q13.32) MUTATED     12    7
  AMP PEAK 20(19Q13.32) WILD-TYPE   30   14
   clus
vv  AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE
  0                            12                              30
  1                             7                              14
                                 vv
clus                              M0 M1 MX
  AMP PEAK 20(19Q13.32) MUTATED   11  0  8
  AMP PEAK 20(19Q13.32) WILD-TYPE 29  2 13
D20V5, multiclass
    clus
vv   AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE
  M0                            11                              29
  M1                             0                               2
  MX                             8                              13
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 20(19Q13.32) MUTATED                                 20
  AMP PEAK 20(19Q13.32) WILD-TYPE                               38
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 20(19Q13.32) MUTATED                                               0
  AMP PEAK 20(19Q13.32) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 20(19Q13.32) MUTATED                                     1
  AMP PEAK 20(19Q13.32) WILD-TYPE                                   7
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 20(19Q13.32) MUTATED                                           0
  AMP PEAK 20(19Q13.32) WILD-TYPE                                         1
D20V6, multiclass
                                               clus
vv                                              AMP PEAK 20(19Q13.32) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                         20
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 0
                                               clus
vv                                              AMP PEAK 20(19Q13.32) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                           38
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                               1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                         7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                   1
D20V7, binary
                                 cls
clus                               0  1
  AMP PEAK 20(19Q13.32) MUTATED    9 12
  AMP PEAK 20(19Q13.32) WILD-TYPE  5 42
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 20(19Q13.32) MUTATED      9   12
  AMP PEAK 20(19Q13.32) WILD-TYPE    5   42
     clus
vv    AMP PEAK 20(19Q13.32) MUTATED AMP PEAK 20(19Q13.32) WILD-TYPE
  NO                              9                               5
  YES                            12                              42
D20V8, continuous
D20V9, continuous

Clustering(21) Variable = AMP PEAK 21(20Q11.21) MUTATION ANALYSIS
D21V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 21(20Q11.21) MUTATED   20  5
  AMP PEAK 21(20Q11.21) WILD-TYPE 36  5
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                             25                              41 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                              5                               5 
$`AMP PEAK 21(20Q11.21) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DS-A0VK 
       49.48        30.41        35.61         2.43        40.93        36.76 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A439 
        6.02         0.26         1.74         1.32         0.82         0.66 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A40J 
        1.22         1.22         2.17         0.07         1.45         1.35 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3L7 TCGA-IR-A3LF TCGA-IR-A3LH 
       25.41        21.67        20.78       147.35        96.92        78.67 
TCGA-LP-A4AX 
        0.07 

$`AMP PEAK 21(20Q11.21) WILD-TYPE`
TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       11.44        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       78.31        87.75        58.88         2.66        69.93        95.08 
TCGA-DS-A5RQ TCGA-EA-A3HT TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        6.84         0.62         1.78         0.30         0.33         0.26 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A2QG TCGA-FU-A3HZ 
       16.44         7.92         6.94         1.12         0.99         1.02 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HM-A4S6 
        1.58         1.48         0.79         3.48         1.02         8.02 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      124.27        66.81       117.40        81.96        26.56        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.10         0.89        29.72         0.07         4.34 

  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                           0.07                            0.07 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                         147.35                          177.04 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                           2.43                            6.94 
[1] "0.1 - 147.3 (2.4)" "0.1 - 177.0 (6.9)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
[1] "hr=" "2.1"
D21V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  AMP PEAK 21(20Q11.21) MUTATED   14       10
  AMP PEAK 21(20Q11.21) WILD-TYPE 28       12
D21V3, multiclass
          clus
vv         AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  T1                                  14                              28
  T2+T3+T4                            10                              12
D21V4, binary
                                 cls
clus                               0  1
  AMP PEAK 21(20Q11.21) MUTATED   14 10
  AMP PEAK 21(20Q11.21) WILD-TYPE 28 11
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED     14   10
  AMP PEAK 21(20Q11.21) WILD-TYPE   28   11
   clus
vv  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  0                            14                              28
  1                            10                              11
                                 vv
clus                              M0 M1 MX
  AMP PEAK 21(20Q11.21) MUTATED   16  0  8
  AMP PEAK 21(20Q11.21) WILD-TYPE 24  2 13
D21V5, multiclass
    clus
vv   AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  M0                            16                              24
  M1                             0                               2
  MX                             8                              13
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 21(20Q11.21) MUTATED                                 24
  AMP PEAK 21(20Q11.21) WILD-TYPE                               34
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 21(20Q11.21) MUTATED                                               1
  AMP PEAK 21(20Q11.21) WILD-TYPE                                             0
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 21(20Q11.21) MUTATED                                     2
  AMP PEAK 21(20Q11.21) WILD-TYPE                                   6
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 21(20Q11.21) MUTATED                                           0
  AMP PEAK 21(20Q11.21) WILD-TYPE                                         1
D21V6, multiclass
                                               clus
vv                                              AMP PEAK 21(20Q11.21) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                         24
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       2
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 0
                                               clus
vv                                              AMP PEAK 21(20Q11.21) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                           34
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                               0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                         6
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                   1
D21V7, binary
                                 cls
clus                               0  1
  AMP PEAK 21(20Q11.21) MUTATED    6 21
  AMP PEAK 21(20Q11.21) WILD-TYPE  8 33
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED      6   21
  AMP PEAK 21(20Q11.21) WILD-TYPE    8   33
     clus
vv    AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  NO                              6                               8
  YES                            21                              33
D21V8, continuous
D21V9, continuous

Clustering(22) Variable = AMP PEAK 22(XQ28) MUTATION ANALYSIS
D22V1, survival
                             sevent
clus2                          0  1
  AMP PEAK 22(XQ28) MUTATED   13  1
  AMP PEAK 22(XQ28) WILD-TYPE 43  9
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                         14                          52 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                          1                           9 
$`AMP PEAK 22(XQ28) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1MF TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A439 
       30.41       177.04        53.13         6.02         1.74         0.66 
TCGA-FU-A23L TCGA-FU-A3NI TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LH TCGA-IR-A3LL 
        1.22         1.45       124.27        66.81        78.67        36.36 
TCGA-MY-A5BD TCGA-MY-A5BF 
       29.72         4.34 

$`AMP PEAK 22(XQ28) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI 
       49.48        11.44        36.56         5.46        67.46        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HR 
        2.66        69.93        95.08         6.84         0.26         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        0.82         0.62         1.78         0.30         0.33         0.26 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A2QG 
       16.44         7.92         6.94         1.12         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        2.17         0.07         1.02         1.58         1.48         0.79 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        3.48         1.35         1.02        25.41        21.67        20.78 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK 
        8.02       147.35       117.40        96.92        81.96        26.56 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BE 
        0.10         0.89         0.07         0.07 

  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                       0.66                        0.07 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                     177.04                      147.35 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                     30.065                       4.470 
[1] "0.7 - 177.0 (30.1)" "0.1 - 147.3 (4.5)" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
  "AMP PEAK 22(XQ28) MUTATED"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
  "AMP PEAK 22(XQ28) MUTATED"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
  "AMP PEAK 22(XQ28) MUTATED"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
[1] "hr=" "3.6"
D22V2, continuous
                             vv
clus                          T1 T2+T3+T4
  AMP PEAK 22(XQ28) MUTATED    7        7
  AMP PEAK 22(XQ28) WILD-TYPE 35       15
D22V3, multiclass
          clus
vv         AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  T1                               7                          35
  T2+T3+T4                         7                          15
D22V4, binary
                             cls
clus                           0  1
  AMP PEAK 22(XQ28) MUTATED   12  2
  AMP PEAK 22(XQ28) WILD-TYPE 30 19
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 22(XQ28) MUTATED     12    2
  AMP PEAK 22(XQ28) WILD-TYPE   30   19
   clus
vv  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  0                        12                          30
  1                         2                          19
                             vv
clus                          M0 M1 MX
  AMP PEAK 22(XQ28) MUTATED    9  0  5
  AMP PEAK 22(XQ28) WILD-TYPE 31  2 16
D22V5, multiclass
    clus
vv   AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  M0                         9                          31
  M1                         0                           2
  MX                         5                          16
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 22(XQ28) MUTATED                                 12
  AMP PEAK 22(XQ28) WILD-TYPE                               46
                             vv
clus                          ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  AMP PEAK 22(XQ28) MUTATED                                               0
  AMP PEAK 22(XQ28) WILD-TYPE                                             1
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 22(XQ28) MUTATED                                     1
  AMP PEAK 22(XQ28) WILD-TYPE                                   7
                             vv
clus                          ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  AMP PEAK 22(XQ28) MUTATED                                           1
  AMP PEAK 22(XQ28) WILD-TYPE                                         0
D22V6, multiclass
                                               clus
vv                                              AMP PEAK 22(XQ28) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                     12
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                         0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                   1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                             1
                                               clus
vv                                              AMP PEAK 22(XQ28) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                       46
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               0
D22V7, binary
                             cls
clus                           0  1
  AMP PEAK 22(XQ28) MUTATED    2 12
  AMP PEAK 22(XQ28) WILD-TYPE 12 42
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 22(XQ28) MUTATED      2   12
  AMP PEAK 22(XQ28) WILD-TYPE   12   42
     clus
vv    AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  NO                          2                          12
  YES                        12                          42
D22V8, continuous
D22V9, continuous

Clustering(23) Variable = DEL PEAK  1(1P36.23) MUTATION ANALYSIS
D23V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.23) MUTATED    7  2
  DEL PEAK  1(1P36.23) WILD-TYPE 49  8
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                             9                             57 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                             2                              8 
$`DEL PEAK  1(1P36.23) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-DS-A0VM TCGA-EA-A3HR TCGA-EA-A439 
       11.44        53.13        35.61        69.93         1.32         0.66 
TCGA-EX-A449 TCGA-FU-A3EO TCGA-IR-A3LF 
        1.12         2.17        96.92 

$`DEL PEAK  1(1P36.23) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        36.56       177.04         5.46        67.46 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ 
        2.66        95.08         6.02         6.84         0.26         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        0.82         0.62         1.78         0.30         0.33         0.26 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       16.44         7.92         6.94         1.22         1.22         0.99 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        0.07         1.02         1.45         1.58         1.48         0.79 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        3.48         1.35         1.02        25.41        21.67        20.78 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LH 
        8.02       147.35       124.27        66.81       117.40        78.67 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       81.96        26.56        36.36         0.10         0.89         0.07 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
       29.72         0.07         4.34 

  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                          0.66                           0.07 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                         96.92                         177.04 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                         11.44                           6.02 
[1] "0.7 - 96.9 (11.4)" "0.1 - 177.0 (6.0)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK  1(1P36.23) MUTATED" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK  1(1P36.23) WILD-TYPE"   "DEL PEAK  1(1P36.23) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK  1(1P36.23) WILD-TYPE" "DEL PEAK  1(1P36.23) WILD-TYPE" 
[1] "hr=" "1.3"
D23V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK  1(1P36.23) MUTATED    6        3
  DEL PEAK  1(1P36.23) WILD-TYPE 36       19
D23V3, multiclass
          clus
vv         DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  T1                                  6                             36
  T2+T3+T4                            3                             19
D23V4, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.23) MUTATED    5  3
  DEL PEAK  1(1P36.23) WILD-TYPE 37 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      5    3
  DEL PEAK  1(1P36.23) WILD-TYPE   37   18
   clus
vv  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  0                            5                             37
  1                            3                             18
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.23) MUTATED    5  1  3
  DEL PEAK  1(1P36.23) WILD-TYPE 35  1 18
D23V5, multiclass
    clus
vv   DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  M0                            5                             35
  M1                            1                              1
  MX                            3                             18
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  1(1P36.23) MUTATED                                  7
  DEL PEAK  1(1P36.23) WILD-TYPE                               51
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  1(1P36.23) MUTATED                                               1
  DEL PEAK  1(1P36.23) WILD-TYPE                                             0
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  1(1P36.23) MUTATED                                     2
  DEL PEAK  1(1P36.23) WILD-TYPE                                   6
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  1(1P36.23) MUTATED                                           0
  DEL PEAK  1(1P36.23) WILD-TYPE                                         1
D23V6, multiclass
                                               clus
vv                                              DEL PEAK  1(1P36.23) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                         7
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      2
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              DEL PEAK  1(1P36.23) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          51
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        6
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D23V7, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.23) MUTATED    3  7
  DEL PEAK  1(1P36.23) WILD-TYPE 11 47
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) MUTATED      3    7
  DEL PEAK  1(1P36.23) WILD-TYPE   11   47
     clus
vv    DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  NO                             3                             11
  YES                            7                             47
D23V8, continuous
D23V9, continuous

Clustering(24) Variable = DEL PEAK  2(2Q22.1) MUTATION ANALYSIS
D24V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(2Q22.1) MUTATED    8  2
  DEL PEAK  2(2Q22.1) WILD-TYPE 48  8
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           10                            56 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            2                             8 
$`DEL PEAK  2(2Q22.1) MUTATED`
TCGA-C5-A1BI TCGA-C5-A1BN TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EA-A44S 
       36.56         5.46        95.08         6.02         1.32         0.30 
TCGA-HM-A3JJ TCGA-IR-A3L7 TCGA-IR-A3LH TCGA-MY-A5BF 
       21.67       147.35        78.67         4.34 

$`DEL PEAK  2(2Q22.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41        11.44       177.04        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ 
       36.76         2.66        69.93         6.84         0.26         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E 
        0.82         0.62         0.66         1.78         0.33         0.26 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L 
       16.44         7.92         6.94         1.12         1.22         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.99         2.17         0.07         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA 
        1.48         0.79         3.48         1.35         1.02        25.41 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
       20.78         8.02       124.27        66.81       117.40        96.92 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       81.96        26.56        36.36         0.10         0.89         0.07 
TCGA-MY-A5BD TCGA-MY-A5BE 
       29.72         0.07 

  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                         0.30                          0.07 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                       147.35                        177.04 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                       13.845                         5.160 
[1] "0.3 - 147.3 (13.8)" "0.1 - 177.0 (5.2)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
[1] "hr=" "1"  
D24V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  2(2Q22.1) MUTATED    4        5
  DEL PEAK  2(2Q22.1) WILD-TYPE 38       17
D24V3, multiclass
          clus
vv         DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  T1                                 4                            38
  T2+T3+T4                           5                            17
D24V4, binary
                               cls
clus                             0  1
  DEL PEAK  2(2Q22.1) MUTATED    5  4
  DEL PEAK  2(2Q22.1) WILD-TYPE 37 17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) MUTATED      5    4
  DEL PEAK  2(2Q22.1) WILD-TYPE   37   17
   clus
vv  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  0                           5                            37
  1                           4                            17
                               vv
clus                            M0 M1 MX
  DEL PEAK  2(2Q22.1) MUTATED    7  0  2
  DEL PEAK  2(2Q22.1) WILD-TYPE 33  2 19
D24V5, multiclass
    clus
vv   DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  M0                           7                            33
  M1                           0                             2
  MX                           2                            19
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  2(2Q22.1) MUTATED                                 10
  DEL PEAK  2(2Q22.1) WILD-TYPE                               48
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  2(2Q22.1) MUTATED                                               0
  DEL PEAK  2(2Q22.1) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  2(2Q22.1) MUTATED                                     0
  DEL PEAK  2(2Q22.1) WILD-TYPE                                   8
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  2(2Q22.1) MUTATED                                           0
  DEL PEAK  2(2Q22.1) WILD-TYPE                                         1
D24V6, multiclass
                                               clus
vv                                              DEL PEAK  2(2Q22.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       10
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               0
                                               clus
vv                                              DEL PEAK  2(2Q22.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         48
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 1
D24V7, binary
                               cls
clus                             0  1
  DEL PEAK  2(2Q22.1) MUTATED    5  5
  DEL PEAK  2(2Q22.1) WILD-TYPE  9 49
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) MUTATED      5    5
  DEL PEAK  2(2Q22.1) WILD-TYPE    9   49
     clus
vv    DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  NO                            5                             9
  YES                           5                            49
D24V8, continuous
D24V9, continuous

Clustering(25) Variable = DEL PEAK  3(2Q37.1) MUTATION ANALYSIS
D25V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(2Q37.1) MUTATED   22  4
  DEL PEAK  3(2Q37.1) WILD-TYPE 34  6
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           26                            40 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                            4                             6 
$`DEL PEAK  3(2Q37.1) MUTATED`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A2LY 
       30.41        11.44        36.56       177.04         5.46        78.31 
TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR 
       87.75         2.66        69.93        95.08         0.26         1.32 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A50E TCGA-EX-A1H6 TCGA-FU-A2QG TCGA-FU-A3HY 
        1.78         0.30         0.26         7.92         0.99         0.07 
TCGA-FU-A3NI TCGA-FU-A3WB TCGA-FU-A40J TCGA-HM-A3JJ TCGA-IR-A3LK TCGA-IR-A3LL 
        1.45         0.79         1.35        21.67        26.56        36.36 
TCGA-LP-A4AX TCGA-MY-A5BF 
        0.07         4.34 

$`DEL PEAK  3(2Q37.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN 
       49.48        67.46        53.13        35.61         2.43        40.93 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HS 
       58.88        36.76         6.02         6.84         1.74         0.82 
TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A4BA TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A449 
        0.62         0.66         0.33        16.44         6.94         1.12 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        1.22         1.22         2.17         1.02         1.58         1.48 
TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        3.48         1.02        25.41        20.78         8.02       147.35 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      124.27        66.81       117.40        96.92        78.67        81.96 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MY-A5BD TCGA-MY-A5BE 
        0.10         0.89        29.72         0.07 

  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                       177.04                        147.35 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                         4.90                          6.89 
[1] "0.1 - 177.0 (4.9)" "0.1 - 147.3 (6.9)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
[1] "hr=" "1.2"
D25V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  3(2Q37.1) MUTATED   20        6
  DEL PEAK  3(2Q37.1) WILD-TYPE 22       16
D25V3, multiclass
          clus
vv         DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  T1                                20                            22
  T2+T3+T4                           6                            16
D25V4, binary
                               cls
clus                             0  1
  DEL PEAK  3(2Q37.1) MUTATED   17  9
  DEL PEAK  3(2Q37.1) WILD-TYPE 25 12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.1) MUTATED     17    9
  DEL PEAK  3(2Q37.1) WILD-TYPE   25   12
   clus
vv  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  0                          17                            25
  1                           9                            12
                               vv
clus                            M0 M1 MX
  DEL PEAK  3(2Q37.1) MUTATED   16  0  9
  DEL PEAK  3(2Q37.1) WILD-TYPE 24  2 12
D25V5, multiclass
    clus
vv   DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  M0                          16                            24
  M1                           0                             2
  MX                           9                            12
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  3(2Q37.1) MUTATED                                 26
  DEL PEAK  3(2Q37.1) WILD-TYPE                               32
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  3(2Q37.1) MUTATED                                               0
  DEL PEAK  3(2Q37.1) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  3(2Q37.1) MUTATED                                     2
  DEL PEAK  3(2Q37.1) WILD-TYPE                                   6
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  3(2Q37.1) MUTATED                                           0
  DEL PEAK  3(2Q37.1) WILD-TYPE                                         1
D25V6, multiclass
                                               clus
vv                                              DEL PEAK  3(2Q37.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       26
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     2
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               0
                                               clus
vv                                              DEL PEAK  3(2Q37.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         32
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       6
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 1
D25V7, binary
                               cls
clus                             0  1
  DEL PEAK  3(2Q37.1) MUTATED    6 22
  DEL PEAK  3(2Q37.1) WILD-TYPE  8 32
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.1) MUTATED      6   22
  DEL PEAK  3(2Q37.1) WILD-TYPE    8   32
     clus
vv    DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  NO                            6                             8
  YES                          22                            32
D25V8, continuous
D25V9, continuous

Clustering(26) Variable = DEL PEAK  4(3P22.1) MUTATION ANALYSIS
D26V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(3P22.1) MUTATED   18  6
  DEL PEAK  4(3P22.1) WILD-TYPE 38  4
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                           24                            42 
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                            6                             4 
$`DEL PEAK  4(3P22.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1MI TCGA-C5-A1MN 
       49.48        11.44        36.56         5.46        35.61        40.93 
TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A3HS 
       87.75        36.76        69.93        95.08         6.84         0.82 
TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A50E TCGA-EX-A1H5 TCGA-FU-A23L TCGA-FU-A3HY 
        0.66         0.30         0.26        16.44         1.22         0.07 
TCGA-FU-A3NI TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-IR-A3L7 TCGA-LP-A4AX 
        1.45         3.48        25.41        21.67       147.35         0.07 

$`DEL PEAK  4(3P22.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A2LY 
       30.41       177.04        67.46        53.13         2.43        78.31 
TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       58.88         2.66         6.02         0.26         1.74         1.32 
TCGA-EA-A3HT TCGA-EA-A43B TCGA-EA-A4BA TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.62         1.78         0.33         7.92         6.94         1.12 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        1.22         0.99         2.17         1.02         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3LA 
        0.79         1.35         1.02        20.78         8.02       124.27 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       66.81       117.40        96.92        78.67        81.96        26.56 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
       36.36         0.10         0.89        29.72         0.07         4.34 

  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                       147.35                        177.04 
  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE 
                        13.94                          3.50 
[1] "0.1 - 147.3 (13.9)" "0.1 - 177.0 (3.5)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  4(3P22.1) MUTATED"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  4(3P22.1) MUTATED"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  4(3P22.1) MUTATED"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  4(3P22.1) MUTATED"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  4(3P22.1) MUTATED"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  4(3P22.1) MUTATED"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  4(3P22.1) WILD-TYPE"   "DEL PEAK  4(3P22.1) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
  "DEL PEAK  4(3P22.1) MUTATED" "DEL PEAK  4(3P22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  4(3P22.1) WILD-TYPE" "DEL PEAK  4(3P22.1) WILD-TYPE" 
[1] "hr=" "2.4"
D26V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  4(3P22.1) MUTATED   16        6
  DEL PEAK  4(3P22.1) WILD-TYPE 26       16
D26V3, multiclass
          clus
vv         DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  T1                                16                            26
  T2+T3+T4                           6                            16
D26V4, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P22.1) MUTATED   10 12
  DEL PEAK  4(3P22.1) WILD-TYPE 32  9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P22.1) MUTATED     10   12
  DEL PEAK  4(3P22.1) WILD-TYPE   32    9
   clus
vv  DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  0                          10                            32
  1                          12                             9
                               vv
clus                            M0 M1 MX
  DEL PEAK  4(3P22.1) MUTATED   14  0  8
  DEL PEAK  4(3P22.1) WILD-TYPE 26  2 13
D26V5, multiclass
    clus
vv   DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  M0                          14                            26
  M1                           0                             2
  MX                           8                            13
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  4(3P22.1) MUTATED                                 25
  DEL PEAK  4(3P22.1) WILD-TYPE                               33
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  4(3P22.1) MUTATED                                               0
  DEL PEAK  4(3P22.1) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  4(3P22.1) MUTATED                                     0
  DEL PEAK  4(3P22.1) WILD-TYPE                                   8
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  4(3P22.1) MUTATED                                           0
  DEL PEAK  4(3P22.1) WILD-TYPE                                         1
D26V6, multiclass
                                               clus
vv                                              DEL PEAK  4(3P22.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       25
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               0
                                               clus
vv                                              DEL PEAK  4(3P22.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         33
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 1
D26V7, binary
                               cls
clus                             0  1
  DEL PEAK  4(3P22.1) MUTATED    8 17
  DEL PEAK  4(3P22.1) WILD-TYPE  6 37
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P22.1) MUTATED      8   17
  DEL PEAK  4(3P22.1) WILD-TYPE    6   37
     clus
vv    DEL PEAK  4(3P22.1) MUTATED DEL PEAK  4(3P22.1) WILD-TYPE
  NO                            8                             6
  YES                          17                            37
D26V8, continuous
D26V9, continuous

Clustering(27) Variable = DEL PEAK  5(3P14.2) MUTATION ANALYSIS
D27V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(3P14.2) MUTATED   20  7
  DEL PEAK  5(3P14.2) WILD-TYPE 36  3
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                           27                            39 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                            7                             3 
$`DEL PEAK  5(3P14.2) MUTATED`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        11.44        36.56         5.46        53.13        35.61 
TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ 
       40.93        87.75        36.76        69.93        95.08         6.84 
TCGA-EA-A1QT TCGA-EA-A3HS TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A50E TCGA-EX-A1H5 
        0.26         0.82         0.66         0.30         0.26        16.44 
TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3YQ TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.22         0.07         1.45         3.48        25.41        21.67 
TCGA-IR-A3L7 TCGA-IR-A3LH TCGA-IR-A3LK 
      147.35        78.67        26.56 

$`DEL PEAK  5(3P14.2) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM 
       30.41       177.04        67.46         2.43        78.31        58.88 
TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HT TCGA-EA-A43B 
        2.66         6.02         1.74         1.32         0.62         1.78 
TCGA-EA-A4BA TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A2QG 
        0.33         7.92         6.94         1.12         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A40J 
        2.17         1.02         1.58         1.48         0.79         1.35 
TCGA-FU-A57G TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
        1.02        20.78         8.02       124.27        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       96.92        81.96        36.36         0.10         0.89         0.07 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
       29.72         0.07         4.34 

  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                       147.35                        177.04 
  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE 
                        21.67                          2.43 
[1] "0.1 - 147.3 (21.7)" "0.1 - 177.0 (2.4)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  5(3P14.2) MUTATED"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  5(3P14.2) MUTATED"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  5(3P14.2) MUTATED"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  5(3P14.2) MUTATED"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  5(3P14.2) MUTATED"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  5(3P14.2) MUTATED"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  5(3P14.2) WILD-TYPE"   "DEL PEAK  5(3P14.2) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  5(3P14.2) MUTATED" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  5(3P14.2) WILD-TYPE" "DEL PEAK  5(3P14.2) WILD-TYPE" 
[1] "hr=" "2.5"
D27V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  5(3P14.2) MUTATED   19        7
  DEL PEAK  5(3P14.2) WILD-TYPE 23       15
D27V3, multiclass
          clus
vv         DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  T1                                19                            23
  T2+T3+T4                           7                            15
D27V4, binary
                               cls
clus                             0  1
  DEL PEAK  5(3P14.2) MUTATED   14 12
  DEL PEAK  5(3P14.2) WILD-TYPE 28  9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) MUTATED     14   12
  DEL PEAK  5(3P14.2) WILD-TYPE   28    9
   clus
vv  DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  0                          14                            28
  1                          12                             9
                               vv
clus                            M0 M1 MX
  DEL PEAK  5(3P14.2) MUTATED   17  0  9
  DEL PEAK  5(3P14.2) WILD-TYPE 23  2 12
D27V5, multiclass
    clus
vv   DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  M0                          17                            23
  M1                           0                             2
  MX                           9                            12
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  5(3P14.2) MUTATED                                 29
  DEL PEAK  5(3P14.2) WILD-TYPE                               29
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  5(3P14.2) MUTATED                                               0
  DEL PEAK  5(3P14.2) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  5(3P14.2) MUTATED                                     0
  DEL PEAK  5(3P14.2) WILD-TYPE                                   8
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  5(3P14.2) MUTATED                                           0
  DEL PEAK  5(3P14.2) WILD-TYPE                                         1
D27V6, multiclass
                                               clus
vv                                              DEL PEAK  5(3P14.2) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       29
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               0
                                               clus
vv                                              DEL PEAK  5(3P14.2) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         29
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 1
D27V7, binary
                               cls
clus                             0  1
  DEL PEAK  5(3P14.2) MUTATED    9 20
  DEL PEAK  5(3P14.2) WILD-TYPE  5 34
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) MUTATED      9   20
  DEL PEAK  5(3P14.2) WILD-TYPE    5   34
     clus
vv    DEL PEAK  5(3P14.2) MUTATED DEL PEAK  5(3P14.2) WILD-TYPE
  NO                            9                             5
  YES                          20                            34
D27V8, continuous
D27V9, continuous

Clustering(28) Variable = DEL PEAK  6(4Q22.1) MUTATION ANALYSIS
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(4Q22.1) MUTATED   10  5
  DEL PEAK  6(4Q22.1) WILD-TYPE 46  5
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           15                            51 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                            5                             5 
$`DEL PEAK  6(4Q22.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DR-A0ZL TCGA-EA-A1QT 
       49.48        11.44         5.46        35.61        87.75         0.26 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A3NI TCGA-HM-A3JJ 
        0.66         1.78        16.44         6.94         1.45        21.67 
TCGA-IR-A3LK TCGA-LP-A4AU TCGA-LP-A4AW 
       26.56         0.10         0.89 

$`DEL PEAK  6(4Q22.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       30.41        36.56       177.04        67.46        53.13         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
       40.93        78.31        58.88        36.76         2.66        69.93 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
       95.08         6.02         6.84         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H6 TCGA-EX-A449 
        0.62         0.30         0.33         0.26         7.92         1.12 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.22         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.58         1.48         0.79         3.48         1.35         1.02 
TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       25.41        20.78         8.02       147.35       124.27        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AX 
      117.40        96.92        78.67        81.96        36.36         0.07 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
       29.72         0.07         4.34 

  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                         0.10                          0.07 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                        87.75                        177.04 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                         6.94                          6.02 
[1] "0.1 - 87.8 (6.9)"  "0.1 - 177.0 (6.0)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  6(4Q22.1) WILD-TYPE" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
[1] "hr=" "5.6"
D28V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  6(4Q22.1) MUTATED    9        5
  DEL PEAK  6(4Q22.1) WILD-TYPE 33       17
D28V3, multiclass
          clus
vv         DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  T1                                 9                            33
  T2+T3+T4                           5                            17
D28V4, binary
                               cls
clus                             0  1
  DEL PEAK  6(4Q22.1) MUTATED    7  7
  DEL PEAK  6(4Q22.1) WILD-TYPE 35 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q22.1) MUTATED      7    7
  DEL PEAK  6(4Q22.1) WILD-TYPE   35   14
   clus
vv  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  0                           7                            35
  1                           7                            14
                               vv
clus                            M0 M1 MX
  DEL PEAK  6(4Q22.1) MUTATED   10  0  4
  DEL PEAK  6(4Q22.1) WILD-TYPE 30  2 17
D28V5, multiclass
    clus
vv   DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  M0                          10                            30
  M1                           0                             2
  MX                           4                            17
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  6(4Q22.1) MUTATED                                 15
  DEL PEAK  6(4Q22.1) WILD-TYPE                               43
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  6(4Q22.1) MUTATED                                               0
  DEL PEAK  6(4Q22.1) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  6(4Q22.1) MUTATED                                     0
  DEL PEAK  6(4Q22.1) WILD-TYPE                                   8
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  6(4Q22.1) MUTATED                                           0
  DEL PEAK  6(4Q22.1) WILD-TYPE                                         1
D28V6, multiclass
                                               clus
vv                                              DEL PEAK  6(4Q22.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       15
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               0
                                               clus
vv                                              DEL PEAK  6(4Q22.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         43
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 1
D28V7, binary
                               cls
clus                             0  1
  DEL PEAK  6(4Q22.1) MUTATED    5 10
  DEL PEAK  6(4Q22.1) WILD-TYPE  9 44
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q22.1) MUTATED      5   10
  DEL PEAK  6(4Q22.1) WILD-TYPE    9   44
     clus
vv    DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  NO                            5                             9
  YES                          10                            44
D28V8, continuous
D28V9, continuous

Clustering(29) Variable = DEL PEAK  7(4Q35.2) MUTATION ANALYSIS
D29V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(4Q35.2) MUTATED   15  6
  DEL PEAK  7(4Q35.2) WILD-TYPE 41  4
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                           21                            45 
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                            6                             4 
$`DEL PEAK  7(4Q35.2) MUTATED`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MN 
       30.41        11.44         5.46        67.46        35.61        40.93 
TCGA-DR-A0ZL TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B 
       87.75         6.84         0.26         0.62         0.66         1.78 
TCGA-EA-A44S TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A2QG TCGA-FU-A3NI TCGA-HM-A3JJ 
        0.30        16.44         6.94         0.99         1.45        21.67 
TCGA-IR-A3LA TCGA-LP-A4AU TCGA-LP-A4AW 
      124.27         0.10         0.89 

$`DEL PEAK  7(4Q35.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A2LY 
       49.48        36.56       177.04        53.13         2.43        78.31 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66        69.93        95.08         6.02 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H6 
        1.74         1.32         0.82         0.33         0.26         7.92 
TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.12         1.22         1.22         2.17         0.07         1.02 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.58         1.48         0.79         3.48         1.35         1.02 
TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LC 
       25.41        20.78         8.02       147.35        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AX 
       96.92        78.67        81.96        26.56        36.36         0.07 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
       29.72         0.07         4.34 

  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                         0.10                          0.07 
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                       124.27                        177.04 
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                         6.84                          6.02 
[1] "0.1 - 124.3 (6.8)" "0.1 - 177.0 (6.0)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
  "DEL PEAK  7(4Q35.2) MUTATED"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "DEL PEAK  7(4Q35.2) MUTATED"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "DEL PEAK  7(4Q35.2) MUTATED"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
  "DEL PEAK  7(4Q35.2) MUTATED"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "DEL PEAK  7(4Q35.2) MUTATED"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "DEL PEAK  7(4Q35.2) MUTATED"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  7(4Q35.2) WILD-TYPE"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
  "DEL PEAK  7(4Q35.2) MUTATED"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "DEL PEAK  7(4Q35.2) MUTATED"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK  7(4Q35.2) MUTATED" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
  "DEL PEAK  7(4Q35.2) MUTATED"   "DEL PEAK  7(4Q35.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  7(4Q35.2) WILD-TYPE" "DEL PEAK  7(4Q35.2) WILD-TYPE" 
[1] "hr=" "4.2"
D29V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  7(4Q35.2) MUTATED   14        5
  DEL PEAK  7(4Q35.2) WILD-TYPE 28       17
D29V3, multiclass
          clus
vv         DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  T1                                14                            28
  T2+T3+T4                           5                            17
D29V4, binary
                               cls
clus                             0  1
  DEL PEAK  7(4Q35.2) MUTATED   12  7
  DEL PEAK  7(4Q35.2) WILD-TYPE 30 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q35.2) MUTATED     12    7
  DEL PEAK  7(4Q35.2) WILD-TYPE   30   14
   clus
vv  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  0                          12                            30
  1                           7                            14
                               vv
clus                            M0 M1 MX
  DEL PEAK  7(4Q35.2) MUTATED   13  0  5
  DEL PEAK  7(4Q35.2) WILD-TYPE 27  2 16
D29V5, multiclass
    clus
vv   DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  M0                          13                            27
  M1                           0                             2
  MX                           5                            16
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  7(4Q35.2) MUTATED                                 20
  DEL PEAK  7(4Q35.2) WILD-TYPE                               38
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  7(4Q35.2) MUTATED                                               0
  DEL PEAK  7(4Q35.2) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  7(4Q35.2) MUTATED                                     0
  DEL PEAK  7(4Q35.2) WILD-TYPE                                   8
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  7(4Q35.2) MUTATED                                           1
  DEL PEAK  7(4Q35.2) WILD-TYPE                                         0
D29V6, multiclass
                                               clus
vv                                              DEL PEAK  7(4Q35.2) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       20
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               1
                                               clus
vv                                              DEL PEAK  7(4Q35.2) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         38
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 0
D29V7, binary
                               cls
clus                             0  1
  DEL PEAK  7(4Q35.2) MUTATED    6 15
  DEL PEAK  7(4Q35.2) WILD-TYPE  8 39
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q35.2) MUTATED      6   15
  DEL PEAK  7(4Q35.2) WILD-TYPE    8   39
     clus
vv    DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  NO                            6                             8
  YES                          15                            39
D29V8, continuous
D29V9, continuous

Clustering(30) Variable = DEL PEAK  8(5Q15) MUTATION ANALYSIS
D30V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  8(5Q15) MUTATED   14  6
  DEL PEAK  8(5Q15) WILD-TYPE 42  4
  DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE 
                         20                          46 
  DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE 
                          6                           4 
$`DEL PEAK  8(5Q15) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DR-A0ZL 
       11.44       177.04         5.46        35.61        40.93        87.75 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A439 
       36.76         2.66        69.93         0.26         1.32         0.66 
TCGA-EX-A1H5 TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3NI TCGA-HG-A2PA 
       16.44         1.22         0.99         0.07         1.45        25.41 
TCGA-HM-A3JJ TCGA-LP-A4AW 
       21.67         0.89 

$`DEL PEAK  8(5Q15) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       49.48        30.41        36.56        67.46        53.13         2.43 
TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ 
       78.31        58.88        95.08         6.02         6.84         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        0.82         0.62         1.78         0.30         0.33         0.26 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A3EO TCGA-FU-A3HZ 
        7.92         6.94         1.12         1.22         2.17         1.02 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.58         1.48         0.79         3.48         1.35         1.02 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       20.78         8.02       147.35       124.27        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU 
       96.92        78.67        81.96        26.56        36.36         0.10 
TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07        29.72         0.07         4.34 

  DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE 
                       0.07                        0.07 
  DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE 
                     177.04                      147.35 
  DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE 
                       8.45                        6.43 
[1] "0.1 - 177.0 (8.4)" "0.1 - 147.3 (6.4)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "DEL PEAK  8(5Q15) MUTATED"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "DEL PEAK  8(5Q15) MUTATED"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"DEL PEAK  8(5Q15) WILD-TYPE"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK  8(5Q15) WILD-TYPE"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"DEL PEAK  8(5Q15) WILD-TYPE"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK  8(5Q15) WILD-TYPE"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "DEL PEAK  8(5Q15) MUTATED"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "DEL PEAK  8(5Q15) MUTATED"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"DEL PEAK  8(5Q15) WILD-TYPE"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK  8(5Q15) WILD-TYPE"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"DEL PEAK  8(5Q15) WILD-TYPE"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK  8(5Q15) WILD-TYPE"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "DEL PEAK  8(5Q15) MUTATED"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "DEL PEAK  8(5Q15) MUTATED"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"DEL PEAK  8(5Q15) WILD-TYPE"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK  8(5Q15) WILD-TYPE"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"DEL PEAK  8(5Q15) WILD-TYPE"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
  "DEL PEAK  8(5Q15) MUTATED" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK  8(5Q15) WILD-TYPE"   "DEL PEAK  8(5Q15) MUTATED" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK  8(5Q15) WILD-TYPE" "DEL PEAK  8(5Q15) WILD-TYPE" 
[1] "hr=" "3.9"
D30V2, continuous
                             vv
clus                          T1 T2+T3+T4
  DEL PEAK  8(5Q15) MUTATED   14        4
  DEL PEAK  8(5Q15) WILD-TYPE 28       18
D30V3, multiclass
          clus
vv         DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE
  T1                              14                          28
  T2+T3+T4                         4                          18
D30V4, binary
                             cls
clus                           0  1
  DEL PEAK  8(5Q15) MUTATED   10  8
  DEL PEAK  8(5Q15) WILD-TYPE 32 13
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  8(5Q15) MUTATED     10    8
  DEL PEAK  8(5Q15) WILD-TYPE   32   13
   clus
vv  DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE
  0                        10                          32
  1                         8                          13
                             vv
clus                          M0 M1 MX
  DEL PEAK  8(5Q15) MUTATED   10  0  7
  DEL PEAK  8(5Q15) WILD-TYPE 30  2 14
D30V5, multiclass
    clus
vv   DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE
  M0                        10                          30
  M1                         0                           2
  MX                         7                          14
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  8(5Q15) MUTATED                                 20
  DEL PEAK  8(5Q15) WILD-TYPE                               38
                             vv
clus                          ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  8(5Q15) MUTATED                                               0
  DEL PEAK  8(5Q15) WILD-TYPE                                             1
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  8(5Q15) MUTATED                                     0
  DEL PEAK  8(5Q15) WILD-TYPE                                   8
                             vv
clus                          ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  8(5Q15) MUTATED                                           0
  DEL PEAK  8(5Q15) WILD-TYPE                                         1
D30V6, multiclass
                                               clus
vv                                              DEL PEAK  8(5Q15) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                     20
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                         0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                   0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                             0
                                               clus
vv                                              DEL PEAK  8(5Q15) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                       38
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               1
D30V7, binary
                             cls
clus                           0  1
  DEL PEAK  8(5Q15) MUTATED    6 14
  DEL PEAK  8(5Q15) WILD-TYPE  8 40
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  8(5Q15) MUTATED      6   14
  DEL PEAK  8(5Q15) WILD-TYPE    8   40
     clus
vv    DEL PEAK  8(5Q15) MUTATED DEL PEAK  8(5Q15) WILD-TYPE
  NO                          6                           8
  YES                        14                          40
D30V8, continuous
D30V9, continuous

Clustering(31) Variable = DEL PEAK  9(5Q35.2) MUTATION ANALYSIS
D31V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(5Q35.2) MUTATED   13  6
  DEL PEAK  9(5Q35.2) WILD-TYPE 43  4
  DEL PEAK  9(5Q35.2) MUTATED DEL PEAK  9(5Q35.2) WILD-TYPE 
                           19                            47 
  DEL PEAK  9(5Q35.2) MUTATED DEL PEAK  9(5Q35.2) WILD-TYPE 
                            6                             4 
$`DEL PEAK  9(5Q35.2) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DS-A0VK 
       11.44         5.46        35.61        40.93        87.75        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A439 TCGA-EX-A1H5 
        2.66        69.93         0.26         1.32         0.66        16.44 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-IR-A3LA 
        1.22         0.99         0.07        25.41        21.67       124.27 
TCGA-LP-A4AW 
        0.89 

$`DEL PEAK  9(5Q35.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41        36.56       177.04        67.46        53.13 
TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ 
        2.43        78.31        58.88        95.08         6.02         6.84 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        1.74         0.82         0.62         1.78         0.30         0.33 
TCGA-EA-A50E TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A3EO 
        0.26         7.92         6.94         1.12         1.22         2.17 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.79         3.48 
TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LB 
        1.35         1.02        20.78         8.02       147.35        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      117.40        96.92        78.67        81.96        26.56        36.36 
TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.10         0.07        29.72         0.07         4.34 

  DEL PEAK  9(5Q35.2) MUTATED DEL PEAK  9(5Q35.2) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK  9(5Q35.2) MUTATED DEL PEAK  9(5Q35.2) WILD-TYPE 
                       124.27                        177.04 
  DEL PEAK  9(5Q35.2) MUTATED DEL PEAK  9(5Q35.2) WILD-TYPE 
                        11.44                          6.02 
[1] "0.1 - 124.3 (11.4)" "0.1 - 177.0 (6.0)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  9(5Q35.2) MUTATED"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  9(5Q35.2) MUTATED"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  9(5Q35.2) MUTATED"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK  9(5Q35.2) MUTATED" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK  9(5Q35.2) WILD-TYPE"   "DEL PEAK  9(5Q35.2) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK  9(5Q35.2) WILD-TYPE" "DEL PEAK  9(5Q35.2) WILD-TYPE" 
[1] "hr=" "3.9"
D31V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK  9(5Q35.2) MUTATED   13        4
  DEL PEAK  9(5Q35.2) WILD-TYPE 29       18
D31V3, multiclass
          clus
vv         DEL PEAK  9(5Q35.2) MUTATED DEL PEAK  9(5Q35.2) WILD-TYPE
  T1                                13                            29
  T2+T3+T4                           4                            18
D31V4, binary
                               cls
clus                             0  1
  DEL PEAK  9(5Q35.2) MUTATED   10  7
  DEL PEAK  9(5Q35.2) WILD-TYPE 32 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(5Q35.2) MUTATED     10    7
  DEL PEAK  9(5Q35.2) WILD-TYPE   32   14
   clus
vv  DEL PEAK  9(5Q35.2) MUTATED DEL PEAK  9(5Q35.2) WILD-TYPE
  0                          10                            32
  1                           7                            14
                               vv
clus                            M0 M1 MX
  DEL PEAK  9(5Q35.2) MUTATED   11  0  5
  DEL PEAK  9(5Q35.2) WILD-TYPE 29  2 16
D31V5, multiclass
    clus
vv   DEL PEAK  9(5Q35.2) MUTATED DEL PEAK  9(5Q35.2) WILD-TYPE
  M0                          11                            29
  M1                           0                             2
  MX                           5                            16
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  9(5Q35.2) MUTATED                                 18
  DEL PEAK  9(5Q35.2) WILD-TYPE                               40
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK  9(5Q35.2) MUTATED                                               0
  DEL PEAK  9(5Q35.2) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  9(5Q35.2) MUTATED                                     0
  DEL PEAK  9(5Q35.2) WILD-TYPE                                   8
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK  9(5Q35.2) MUTATED                                           1
  DEL PEAK  9(5Q35.2) WILD-TYPE                                         0
D31V6, multiclass
                                               clus
vv                                              DEL PEAK  9(5Q35.2) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       18
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               1
                                               clus
vv                                              DEL PEAK  9(5Q35.2) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         40
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 0
D31V7, binary
                               cls
clus                             0  1
  DEL PEAK  9(5Q35.2) MUTATED    6 13
  DEL PEAK  9(5Q35.2) WILD-TYPE  8 41
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(5Q35.2) MUTATED      6   13
  DEL PEAK  9(5Q35.2) WILD-TYPE    8   41
     clus
vv    DEL PEAK  9(5Q35.2) MUTATED DEL PEAK  9(5Q35.2) WILD-TYPE
  NO                            6                             8
  YES                          13                            41
D31V8, continuous
D31V9, continuous

Clustering(32) Variable = DEL PEAK 10(6P24.2) MUTATION ANALYSIS
D32V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(6P24.2) MUTATED    7  1
  DEL PEAK 10(6P24.2) WILD-TYPE 49  9
  DEL PEAK 10(6P24.2) MUTATED DEL PEAK 10(6P24.2) WILD-TYPE 
                            8                            58 
  DEL PEAK 10(6P24.2) MUTATED DEL PEAK 10(6P24.2) WILD-TYPE 
                            1                             9 
$`DEL PEAK 10(6P24.2) MUTATED`
TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A44S TCGA-EX-A1H6 TCGA-FU-A3HY 
       36.76        69.93         6.02         0.30         7.92         0.07 
TCGA-HG-A2PA TCGA-IR-A3L7 
       25.41       147.35 

$`DEL PEAK 10(6P24.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
       67.46        53.13        35.61         2.43        40.93        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT 
       87.75        58.88         2.66        95.08         6.84         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B 
        1.74         1.32         0.82         0.62         0.66         1.78 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K 
        0.33         0.26        16.44         6.94         1.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        1.22         0.99         2.17         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JJ 
        1.48         0.79         3.48         1.35         1.02        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
       20.78         8.02       124.27        66.81       117.40        96.92 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW 
       78.67        81.96        26.56        36.36         0.10         0.89 
TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07        29.72         0.07         4.34 

  DEL PEAK 10(6P24.2) MUTATED DEL PEAK 10(6P24.2) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK 10(6P24.2) MUTATED DEL PEAK 10(6P24.2) WILD-TYPE 
                       147.35                        177.04 
  DEL PEAK 10(6P24.2) MUTATED DEL PEAK 10(6P24.2) WILD-TYPE 
                       16.665                         4.900 
[1] "0.1 - 147.3 (16.7)" "0.1 - 177.0 (4.9)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK 10(6P24.2) MUTATED" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK 10(6P24.2) MUTATED" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK 10(6P24.2) MUTATED" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK 10(6P24.2) WILD-TYPE"   "DEL PEAK 10(6P24.2) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK 10(6P24.2) WILD-TYPE"   "DEL PEAK 10(6P24.2) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK 10(6P24.2) MUTATED" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK 10(6P24.2) WILD-TYPE"   "DEL PEAK 10(6P24.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK 10(6P24.2) WILD-TYPE"   "DEL PEAK 10(6P24.2) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK 10(6P24.2) MUTATED" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK 10(6P24.2) MUTATED" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK 10(6P24.2) MUTATED" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK 10(6P24.2) WILD-TYPE"   "DEL PEAK 10(6P24.2) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK 10(6P24.2) WILD-TYPE"   "DEL PEAK 10(6P24.2) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK 10(6P24.2) MUTATED" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK 10(6P24.2) WILD-TYPE"   "DEL PEAK 10(6P24.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK 10(6P24.2) WILD-TYPE"   "DEL PEAK 10(6P24.2) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK 10(6P24.2) MUTATED" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK 10(6P24.2) MUTATED" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK 10(6P24.2) MUTATED" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
"DEL PEAK 10(6P24.2) WILD-TYPE"   "DEL PEAK 10(6P24.2) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
"DEL PEAK 10(6P24.2) WILD-TYPE"   "DEL PEAK 10(6P24.2) MUTATED" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK 10(6P24.2) MUTATED" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK 10(6P24.2) WILD-TYPE"   "DEL PEAK 10(6P24.2) MUTATED" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK 10(6P24.2) WILD-TYPE"   "DEL PEAK 10(6P24.2) MUTATED" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
[1] "hr=" "1.6"
D32V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK 10(6P24.2) MUTATED    6        2
  DEL PEAK 10(6P24.2) WILD-TYPE 36       20
D32V3, multiclass
          clus
vv         DEL PEAK 10(6P24.2) MUTATED DEL PEAK 10(6P24.2) WILD-TYPE
  T1                                 6                            36
  T2+T3+T4                           2                            20
D32V4, binary
                               cls
clus                             0  1
  DEL PEAK 10(6P24.2) MUTATED    3  5
  DEL PEAK 10(6P24.2) WILD-TYPE 39 16
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6P24.2) MUTATED      3    5
  DEL PEAK 10(6P24.2) WILD-TYPE   39   16
   clus
vv  DEL PEAK 10(6P24.2) MUTATED DEL PEAK 10(6P24.2) WILD-TYPE
  0                           3                            39
  1                           5                            16
                               vv
clus                            M0 M1 MX
  DEL PEAK 10(6P24.2) MUTATED    6  0  2
  DEL PEAK 10(6P24.2) WILD-TYPE 34  2 19
D32V5, multiclass
    clus
vv   DEL PEAK 10(6P24.2) MUTATED DEL PEAK 10(6P24.2) WILD-TYPE
  M0                           6                            34
  M1                           0                             2
  MX                           2                            19
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 10(6P24.2) MUTATED                                  8
  DEL PEAK 10(6P24.2) WILD-TYPE                               50
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 10(6P24.2) MUTATED                                               0
  DEL PEAK 10(6P24.2) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 10(6P24.2) MUTATED                                     1
  DEL PEAK 10(6P24.2) WILD-TYPE                                   7
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 10(6P24.2) MUTATED                                           0
  DEL PEAK 10(6P24.2) WILD-TYPE                                         1
D32V6, multiclass
                                               clus
vv                                              DEL PEAK 10(6P24.2) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        8
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               0
                                               clus
vv                                              DEL PEAK 10(6P24.2) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         50
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 1
D32V7, binary
                               cls
clus                             0  1
  DEL PEAK 10(6P24.2) MUTATED    1  8
  DEL PEAK 10(6P24.2) WILD-TYPE 13 46
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6P24.2) MUTATED      1    8
  DEL PEAK 10(6P24.2) WILD-TYPE   13   46
     clus
vv    DEL PEAK 10(6P24.2) MUTATED DEL PEAK 10(6P24.2) WILD-TYPE
  NO                            1                            13
  YES                           8                            46
D32V8, continuous
[1] "Remove cluster labels:"      "DEL PEAK 10(6P24.2) MUTATED"
clus
  DEL PEAK 10(6P24.2) MUTATED DEL PEAK 10(6P24.2) WILD-TYPE 
                            2                            17 
                   TCGA-BI-A0VR                    TCGA-C5-A1BI 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1BN                    TCGA-C5-A1MF 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MN 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-DS-A5RQ 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-FU-A2QG 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3EO                    TCGA-FU-A3TQ 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-FU-A3WB                    TCGA-FU-A3YQ 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3LB 
"DEL PEAK 10(6P24.2) WILD-TYPE" "DEL PEAK 10(6P24.2) WILD-TYPE" 
                   TCGA-IR-A3LH 
"DEL PEAK 10(6P24.2) WILD-TYPE" 
D32V9, continuous

Clustering(33) Variable = DEL PEAK 11(6Q26) MUTATION ANALYSIS
D33V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 11(6Q26) MUTATED   19  1
  DEL PEAK 11(6Q26) WILD-TYPE 37  9
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         20                          46 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                          1                           9 
$`DEL PEAK 11(6Q26) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A439 
       49.48        36.56        67.46        69.93         0.26         0.66 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23L TCGA-FU-A3HY 
        1.78         0.30         7.92         1.12         1.22         0.07 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JK TCGA-IR-A3L7 TCGA-IR-A3LC 
        3.48         1.35         1.02        20.78       147.35       117.40 
TCGA-IR-A3LH TCGA-LP-A4AX 
       78.67         0.07 

$`DEL PEAK 11(6Q26) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI 
       30.41        11.44       177.04         5.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR 
        2.66        95.08         6.02         6.84         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A3L1 
        0.82         0.62         0.33         0.26        16.44         6.94 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        1.22         0.99         2.17         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A4S6 TCGA-IR-A3LA 
        1.48         0.79        25.41        21.67         8.02       124.27 
TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU 
       66.81        96.92        81.96        26.56        36.36         0.10 
TCGA-LP-A4AW TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.89        29.72         0.07         4.34 

  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                       0.07                        0.07 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                     147.35                      177.04 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                       2.63                        6.89 
[1] "0.1 - 147.3 (2.6)" "0.1 - 177.0 (6.9)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
  "DEL PEAK 11(6Q26) MUTATED"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK 11(6Q26) WILD-TYPE"   "DEL PEAK 11(6Q26) MUTATED" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
  "DEL PEAK 11(6Q26) MUTATED" "DEL PEAK 11(6Q26) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK 11(6Q26) WILD-TYPE" "DEL PEAK 11(6Q26) WILD-TYPE" 
[1] "hr=" "4.2"
D33V2, continuous
                             vv
clus                          T1 T2+T3+T4
  DEL PEAK 11(6Q26) MUTATED   13        7
  DEL PEAK 11(6Q26) WILD-TYPE 29       15
D33V3, multiclass
          clus
vv         DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  T1                              13                          29
  T2+T3+T4                         7                          15
D33V4, binary
                             cls
clus                           0  1
  DEL PEAK 11(6Q26) MUTATED   12  7
  DEL PEAK 11(6Q26) WILD-TYPE 30 14
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q26) MUTATED     12    7
  DEL PEAK 11(6Q26) WILD-TYPE   30   14
   clus
vv  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  0                        12                          30
  1                         7                          14
                             vv
clus                          M0 M1 MX
  DEL PEAK 11(6Q26) MUTATED   12  1  7
  DEL PEAK 11(6Q26) WILD-TYPE 28  1 14
D33V5, multiclass
    clus
vv   DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  M0                        12                          28
  M1                         1                           1
  MX                         7                          14
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 11(6Q26) MUTATED                                 17
  DEL PEAK 11(6Q26) WILD-TYPE                               41
                             vv
clus                          ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 11(6Q26) MUTATED                                               0
  DEL PEAK 11(6Q26) WILD-TYPE                                             1
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 11(6Q26) MUTATED                                     4
  DEL PEAK 11(6Q26) WILD-TYPE                                   4
                             vv
clus                          ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 11(6Q26) MUTATED                                           0
  DEL PEAK 11(6Q26) WILD-TYPE                                         1
D33V6, multiclass
                                               clus
vv                                              DEL PEAK 11(6Q26) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                     17
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                         0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                   4
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                             0
                                               clus
vv                                              DEL PEAK 11(6Q26) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                       41
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     4
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               1
D33V7, binary
                             cls
clus                           0  1
  DEL PEAK 11(6Q26) MUTATED    2 19
  DEL PEAK 11(6Q26) WILD-TYPE 12 35
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q26) MUTATED      2   19
  DEL PEAK 11(6Q26) WILD-TYPE   12   35
     clus
vv    DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  NO                          2                          12
  YES                        19                          35
D33V8, continuous
D33V9, continuous

Clustering(34) Variable = DEL PEAK 12(7Q34) MUTATION ANALYSIS
D34V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 12(7Q34) MUTATED    6  6
  DEL PEAK 12(7Q34) WILD-TYPE 50  4
  DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE 
                         12                          54 
  DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE 
                          6                           4 
$`DEL PEAK 12(7Q34) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MN TCGA-EA-A3HT 
       11.44         5.46        67.46        35.61        40.93         0.62 
TCGA-EA-A439 TCGA-EX-A1H5 TCGA-FU-A2QG TCGA-FU-A40J TCGA-HM-A3JJ TCGA-MY-A5BF 
        0.66        16.44         0.99         1.35        21.67         4.34 

$`DEL PEAK 12(7Q34) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MK 
       49.48        30.41        36.56       177.04        53.13         2.43 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
       78.31        87.75        58.88        36.76         2.66        69.93 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       95.08         6.02         6.84         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H6 
        0.82         1.78         0.30         0.33         0.26         7.92 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY 
        6.94         1.12         1.22         1.22         2.17         0.07 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.79         3.48 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA 
        1.02        25.41        20.78         8.02       147.35       124.27 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       66.81       117.40        96.92        78.67        81.96        26.56 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE 
       36.36         0.10         0.89         0.07        29.72         0.07 

  DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE 
                       0.62                        0.07 
  DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE 
                      67.46                      177.04 
  DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE 
                       8.45                        6.43 
[1] "0.6 - 67.5 (8.4)"  "0.1 - 177.0 (6.4)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 12(7Q34) WILD-TYPE"   "DEL PEAK 12(7Q34) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
  "DEL PEAK 12(7Q34) MUTATED"   "DEL PEAK 12(7Q34) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"DEL PEAK 12(7Q34) WILD-TYPE"   "DEL PEAK 12(7Q34) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK 12(7Q34) WILD-TYPE"   "DEL PEAK 12(7Q34) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 12(7Q34) WILD-TYPE"   "DEL PEAK 12(7Q34) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
  "DEL PEAK 12(7Q34) MUTATED"   "DEL PEAK 12(7Q34) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"DEL PEAK 12(7Q34) WILD-TYPE"   "DEL PEAK 12(7Q34) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK 12(7Q34) WILD-TYPE"   "DEL PEAK 12(7Q34) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A0TN                  TCGA-C5-A1BI 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 12(7Q34) WILD-TYPE"   "DEL PEAK 12(7Q34) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-DS-A5RQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A1QT                  TCGA-EA-A3HQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HR                  TCGA-EA-A3HS 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HT                  TCGA-EA-A439 
  "DEL PEAK 12(7Q34) MUTATED"   "DEL PEAK 12(7Q34) MUTATED" 
                 TCGA-EA-A43B                  TCGA-EA-A44S 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EA-A4BA                  TCGA-EA-A50E 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A1H6 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-EX-A3L1                  TCGA-EX-A449 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-FU-A3TQ 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3TX                  TCGA-FU-A3WB 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-FU-A3YQ                  TCGA-FU-A40J 
"DEL PEAK 12(7Q34) WILD-TYPE"   "DEL PEAK 12(7Q34) MUTATED" 
                 TCGA-FU-A57G                  TCGA-HG-A2PA 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-HM-A3JJ                  TCGA-HM-A3JK 
  "DEL PEAK 12(7Q34) MUTATED" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-HM-A4S6                  TCGA-IR-A3L7 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LA                  TCGA-IR-A3LB 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LC                  TCGA-IR-A3LF 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LH                  TCGA-IR-A3LI 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-IR-A3LK                  TCGA-IR-A3LL 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-LP-A4AU                  TCGA-LP-A4AW 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-LP-A4AX                  TCGA-MY-A5BD 
"DEL PEAK 12(7Q34) WILD-TYPE" "DEL PEAK 12(7Q34) WILD-TYPE" 
                 TCGA-MY-A5BE                  TCGA-MY-A5BF 
"DEL PEAK 12(7Q34) WILD-TYPE"   "DEL PEAK 12(7Q34) MUTATED" 
[1] "hr=" "9.7"
D34V2, continuous
                             vv
clus                          T1 T2+T3+T4
  DEL PEAK 12(7Q34) MUTATED    6        4
  DEL PEAK 12(7Q34) WILD-TYPE 36       18
D34V3, multiclass
          clus
vv         DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE
  T1                               6                          36
  T2+T3+T4                         4                          18
D34V4, binary
                             cls
clus                           0  1
  DEL PEAK 12(7Q34) MUTATED    5  5
  DEL PEAK 12(7Q34) WILD-TYPE 37 16
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 12(7Q34) MUTATED      5    5
  DEL PEAK 12(7Q34) WILD-TYPE   37   16
   clus
vv  DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE
  0                         5                          37
  1                         5                          16
                             vv
clus                          M0 M1 MX
  DEL PEAK 12(7Q34) MUTATED    4  0  5
  DEL PEAK 12(7Q34) WILD-TYPE 36  2 16
D34V5, multiclass
    clus
vv   DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE
  M0                         4                          36
  M1                         0                           2
  MX                         5                          16
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 12(7Q34) MUTATED                                 11
  DEL PEAK 12(7Q34) WILD-TYPE                               47
                             vv
clus                          ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 12(7Q34) MUTATED                                               0
  DEL PEAK 12(7Q34) WILD-TYPE                                             1
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 12(7Q34) MUTATED                                     1
  DEL PEAK 12(7Q34) WILD-TYPE                                   7
                             vv
clus                          ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 12(7Q34) MUTATED                                           0
  DEL PEAK 12(7Q34) WILD-TYPE                                         1
D34V6, multiclass
                                               clus
vv                                              DEL PEAK 12(7Q34) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                     11
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                         0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                   1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                             0
                                               clus
vv                                              DEL PEAK 12(7Q34) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                       47
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               1
D34V7, binary
                             cls
clus                           0  1
  DEL PEAK 12(7Q34) MUTATED    6  6
  DEL PEAK 12(7Q34) WILD-TYPE  8 48
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 12(7Q34) MUTATED      6    6
  DEL PEAK 12(7Q34) WILD-TYPE    8   48
     clus
vv    DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE
  NO                          6                           8
  YES                         6                          48
D34V8, continuous
D34V9, continuous

Clustering(35) Variable = DEL PEAK 13(10Q23.31) MUTATION ANALYSIS
D35V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 13(10Q23.31) MUTATED   11  5
  DEL PEAK 13(10Q23.31) WILD-TYPE 45  5
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             16                              50 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                              5                               5 
$`DEL PEAK 13(10Q23.31) MUTATED`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1MI TCGA-DS-A0VK TCGA-EA-A439 TCGA-EX-A1H5 
       30.41        11.44        35.61        36.76         0.66        16.44 
TCGA-FU-A2QG TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A40J TCGA-HM-A3JJ TCGA-HM-A3JK 
        0.99         1.58         1.48         1.35        21.67        20.78 
TCGA-IR-A3LB TCGA-IR-A3LH TCGA-IR-A3LL TCGA-LP-A4AX 
       66.81        78.67        36.36         0.07 

$`DEL PEAK 13(10Q23.31) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL 
        2.43        40.93        78.31        87.75        58.88         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ 
       69.93        95.08         6.02         6.84         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        1.32         0.82         0.62         1.78         0.30         0.33 
TCGA-EA-A50E TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L 
        0.26         7.92         6.94         1.12         1.22         1.22 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3WB TCGA-FU-A3YQ 
        2.17         0.07         1.02         1.45         0.79         3.48 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LC 
        1.02        25.41         8.02       147.35       124.27       117.40 
TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MY-A5BD 
       96.92        81.96        26.56         0.10         0.89        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07         4.34 

  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                           0.07                            0.07 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                          78.67                          177.04 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                          18.61                            4.90 
[1] "0.1 - 78.7 (18.6)" "0.1 - 177.0 (4.9)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 13(10Q23.31) MUTATED"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 13(10Q23.31) WILD-TYPE"   "DEL PEAK 13(10Q23.31) MUTATED" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
  "DEL PEAK 13(10Q23.31) MUTATED" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 13(10Q23.31) WILD-TYPE" "DEL PEAK 13(10Q23.31) WILD-TYPE" 
[1] "hr=" "3.9"
D35V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  DEL PEAK 13(10Q23.31) MUTATED   10        6
  DEL PEAK 13(10Q23.31) WILD-TYPE 32       16
D35V3, multiclass
          clus
vv         DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  T1                                  10                              32
  T2+T3+T4                             6                              16
D35V4, binary
                                 cls
clus                               0  1
  DEL PEAK 13(10Q23.31) MUTATED    8  8
  DEL PEAK 13(10Q23.31) WILD-TYPE 34 13
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) MUTATED      8    8
  DEL PEAK 13(10Q23.31) WILD-TYPE   34   13
   clus
vv  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  0                             8                              34
  1                             8                              13
                                 vv
clus                              M0 M1 MX
  DEL PEAK 13(10Q23.31) MUTATED    9  0  6
  DEL PEAK 13(10Q23.31) WILD-TYPE 31  2 15
D35V5, multiclass
    clus
vv   DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  M0                             9                              31
  M1                             0                               2
  MX                             6                              15
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 13(10Q23.31) MUTATED                                 15
  DEL PEAK 13(10Q23.31) WILD-TYPE                               43
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 13(10Q23.31) MUTATED                                               0
  DEL PEAK 13(10Q23.31) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 13(10Q23.31) MUTATED                                     2
  DEL PEAK 13(10Q23.31) WILD-TYPE                                   6
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 13(10Q23.31) MUTATED                                           0
  DEL PEAK 13(10Q23.31) WILD-TYPE                                         1
D35V6, multiclass
                                               clus
vv                                              DEL PEAK 13(10Q23.31) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                         15
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       2
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 0
                                               clus
vv                                              DEL PEAK 13(10Q23.31) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                           43
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                               1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                         6
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                   1
D35V7, binary
                                 cls
clus                               0  1
  DEL PEAK 13(10Q23.31) MUTATED    5 12
  DEL PEAK 13(10Q23.31) WILD-TYPE  9 42
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) MUTATED      5   12
  DEL PEAK 13(10Q23.31) WILD-TYPE    9   42
     clus
vv    DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  NO                              5                               9
  YES                            12                              42
D35V8, continuous
D35V9, continuous

Clustering(36) Variable = DEL PEAK 14(11P15.5) MUTATION ANALYSIS
D36V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 14(11P15.5) MUTATED   15  4
  DEL PEAK 14(11P15.5) WILD-TYPE 41  6
  DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE 
                            19                             47 
  DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE 
                             4                              6 
$`DEL PEAK 14(11P15.5) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DR-A0ZL TCGA-DS-A0VK 
       49.48       177.04         5.46        35.61        87.75        36.76 
TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A50E TCGA-EX-A1H5 
       95.08         0.26         1.78         0.30         0.26        16.44 
TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A3WB TCGA-IR-A3LC TCGA-IR-A3LK TCGA-LP-A4AX 
        1.22         1.45         0.79       117.40        26.56         0.07 
TCGA-MY-A5BE 
        0.07 

$`DEL PEAK 14(11P15.5) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       30.41        11.44        36.56        67.46        53.13         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ 
       40.93        78.31        58.88         2.66        69.93         6.02 
TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
        6.84         1.74         1.32         0.82         0.62         0.66 
TCGA-EA-A4BA TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A2QG 
        0.33         7.92         6.94         1.12         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3YQ 
        2.17         0.07         1.02         1.58         1.48         3.48 
TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        1.35         1.02        25.41        21.67        20.78         8.02 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      147.35       124.27        66.81        96.92        78.67        81.96 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MY-A5BD TCGA-MY-A5BF 
       36.36         0.10         0.89        29.72         4.34 

  DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE 
                        177.04                         147.35 
  DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE 
                          5.46                           6.84 
[1] "0.1 - 177.0 (5.5)" "0.1 - 147.3 (6.8)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 14(11P15.5) MUTATED"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 14(11P15.5) WILD-TYPE"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 14(11P15.5) MUTATED"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 14(11P15.5) WILD-TYPE"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 14(11P15.5) WILD-TYPE"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 14(11P15.5) WILD-TYPE"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 14(11P15.5) MUTATED"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 14(11P15.5) WILD-TYPE"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 14(11P15.5) MUTATED"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 14(11P15.5) WILD-TYPE"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 14(11P15.5) WILD-TYPE"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 14(11P15.5) WILD-TYPE"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 14(11P15.5) MUTATED"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 14(11P15.5) WILD-TYPE"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 14(11P15.5) MUTATED"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 14(11P15.5) WILD-TYPE"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 14(11P15.5) WILD-TYPE"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 14(11P15.5) WILD-TYPE"   "DEL PEAK 14(11P15.5) MUTATED" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 14(11P15.5) WILD-TYPE" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 14(11P15.5) MUTATED" "DEL PEAK 14(11P15.5) WILD-TYPE" 
[1] "hr=" "1.5"
D36V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 14(11P15.5) MUTATED   13        6
  DEL PEAK 14(11P15.5) WILD-TYPE 29       16
D36V3, multiclass
          clus
vv         DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  T1                                 13                             29
  T2+T3+T4                            6                             16
D36V4, binary
                                cls
clus                              0  1
  DEL PEAK 14(11P15.5) MUTATED   12  7
  DEL PEAK 14(11P15.5) WILD-TYPE 30 14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(11P15.5) MUTATED     12    7
  DEL PEAK 14(11P15.5) WILD-TYPE   30   14
   clus
vv  DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  0                           12                             30
  1                            7                             14
                                vv
clus                             M0 M1 MX
  DEL PEAK 14(11P15.5) MUTATED   13  0  6
  DEL PEAK 14(11P15.5) WILD-TYPE 27  2 15
D36V5, multiclass
    clus
vv   DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  M0                           13                             27
  M1                            0                              2
  MX                            6                             15
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 14(11P15.5) MUTATED                                 20
  DEL PEAK 14(11P15.5) WILD-TYPE                               38
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 14(11P15.5) MUTATED                                               0
  DEL PEAK 14(11P15.5) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 14(11P15.5) MUTATED                                     0
  DEL PEAK 14(11P15.5) WILD-TYPE                                   8
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 14(11P15.5) MUTATED                                           0
  DEL PEAK 14(11P15.5) WILD-TYPE                                         1
D36V6, multiclass
                                               clus
vv                                              DEL PEAK 14(11P15.5) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        20
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              DEL PEAK 14(11P15.5) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          38
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D36V7, binary
                                cls
clus                              0  1
  DEL PEAK 14(11P15.5) MUTATED    4 16
  DEL PEAK 14(11P15.5) WILD-TYPE 10 38
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(11P15.5) MUTATED      4   16
  DEL PEAK 14(11P15.5) WILD-TYPE   10   38
     clus
vv    DEL PEAK 14(11P15.5) MUTATED DEL PEAK 14(11P15.5) WILD-TYPE
  NO                             4                             10
  YES                           16                             38
D36V8, continuous
D36V9, continuous

Clustering(37) Variable = DEL PEAK 15(11Q25) MUTATION ANALYSIS
D37V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 15(11Q25) MUTATED   33  9
  DEL PEAK 15(11Q25) WILD-TYPE 23  1
  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                          42                           24 
  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                           9                            1 
$`DEL PEAK 15(11Q25) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        30.41        11.44       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK 
       53.13        35.61         2.43        78.31        87.75        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT 
        2.66        69.93        95.08         6.02         6.84         0.26 
TCGA-EA-A3HR TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A3L1 
        1.32         0.66         1.78         0.26        16.44         6.94 
TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-HM-A3JJ 
        1.22         0.07         1.45         1.58         0.79        21.67 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
      124.27        66.81       117.40        78.67        81.96        26.56 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
       36.36         0.10         0.07        29.72         0.07         4.34 

$`DEL PEAK 15(11Q25) WILD-TYPE`
TCGA-C5-A1BI TCGA-C5-A1MN TCGA-DR-A0ZM TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
       36.56        40.93        58.88         1.74         0.82         0.62 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A2QG 
        0.30         0.33         7.92         1.12         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TX TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        2.17         1.02         1.48         3.48         1.35         1.02 
TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LF TCGA-LP-A4AW 
       25.41        20.78         8.02       147.35        96.92         0.89 

  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                        0.07                         0.30 
  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                      177.04                       147.35 
  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE 
                       13.94                         1.61 
[1] "0.1 - 177.0 (13.9)" "0.3 - 147.3 (1.6)" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"DEL PEAK 15(11Q25) WILD-TYPE"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"DEL PEAK 15(11Q25) WILD-TYPE" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "DEL PEAK 15(11Q25) MUTATED" "DEL PEAK 15(11Q25) WILD-TYPE" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
  "DEL PEAK 15(11Q25) MUTATED"   "DEL PEAK 15(11Q25) MUTATED" 
[1] "hr=" "2.6"
D37V2, continuous
                              vv
clus                           T1 T2+T3+T4
  DEL PEAK 15(11Q25) MUTATED   25       15
  DEL PEAK 15(11Q25) WILD-TYPE 17        7
D37V3, multiclass
          clus
vv         DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE
  T1                               25                           17
  T2+T3+T4                         15                            7
D37V4, binary
                              cls
clus                            0  1
  DEL PEAK 15(11Q25) MUTATED   26 14
  DEL PEAK 15(11Q25) WILD-TYPE 16  7
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 15(11Q25) MUTATED     26   14
  DEL PEAK 15(11Q25) WILD-TYPE   16    7
   clus
vv  DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE
  0                         26                           16
  1                         14                            7
                              vv
clus                           M0 M1 MX
  DEL PEAK 15(11Q25) MUTATED   26  1 13
  DEL PEAK 15(11Q25) WILD-TYPE 14  1  8
D37V5, multiclass
    clus
vv   DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE
  M0                         26                           14
  M1                          1                            1
  MX                         13                            8
                              vv
clus                           CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 15(11Q25) MUTATED                                 40
  DEL PEAK 15(11Q25) WILD-TYPE                               18
                              vv
clus                           ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 15(11Q25) MUTATED                                               0
  DEL PEAK 15(11Q25) WILD-TYPE                                             1
                              vv
clus                           ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 15(11Q25) MUTATED                                     2
  DEL PEAK 15(11Q25) WILD-TYPE                                   6
                              vv
clus                           ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 15(11Q25) MUTATED                                           1
  DEL PEAK 15(11Q25) WILD-TYPE                                         0
D37V6, multiclass
                                               clus
vv                                              DEL PEAK 15(11Q25) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                      40
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                          0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                    2
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                              1
                                               clus
vv                                              DEL PEAK 15(11Q25) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                        18
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      6
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
D37V7, binary
                              cls
clus                            0  1
  DEL PEAK 15(11Q25) MUTATED   10 33
  DEL PEAK 15(11Q25) WILD-TYPE  4 21
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 15(11Q25) MUTATED     10   33
  DEL PEAK 15(11Q25) WILD-TYPE    4   21
     clus
vv    DEL PEAK 15(11Q25) MUTATED DEL PEAK 15(11Q25) WILD-TYPE
  NO                          10                            4
  YES                         33                           21
D37V8, continuous
D37V9, continuous

Clustering(38) Variable = DEL PEAK 16(13Q12.12) MUTATION ANALYSIS
D38V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 16(13Q12.12) MUTATED   17  3
  DEL PEAK 16(13Q12.12) WILD-TYPE 39  7
  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                             20                              46 
  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                              3                               7 
$`DEL PEAK 16(13Q12.12) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DR-A0ZL TCGA-DS-A0VM 
       49.48        30.41         5.46        35.61        87.75        69.93 
TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A44S TCGA-EX-A1H5 TCGA-FU-A23L TCGA-FU-A3NI 
       95.08         0.26         0.30        16.44         1.22         1.45 
TCGA-FU-A3TQ TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-IR-A3L7 TCGA-IR-A3LH TCGA-LP-A4AU 
        1.58        25.41        21.67       147.35        78.67         0.10 
TCGA-LP-A4AW TCGA-LP-A4AX 
        0.89         0.07 

$`DEL PEAK 16(13Q12.12) WILD-TYPE`
TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       11.44        36.56       177.04        67.46        53.13         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A3LQ 
       40.93        78.31        58.88        36.76         2.66         6.02 
TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
        6.84         1.74         1.32         0.82         0.62         0.66 
TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        1.78         0.33         0.26         7.92         6.94         1.12 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TX 
        1.22         0.99         2.17         0.07         1.02         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JK TCGA-HM-A4S6 
        0.79         3.48         1.35         1.02        20.78         8.02 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK 
      124.27        66.81       117.40        96.92        81.96        26.56 
TCGA-IR-A3LL TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
       36.36        29.72         0.07         4.34 

  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                           0.07                            0.07 
  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                         147.35                          177.04 
  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE 
                         19.055                           5.180 
[1] "0.1 - 147.3 (19.1)" "0.1 - 177.0 (5.2)" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 16(13Q12.12) WILD-TYPE"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
  "DEL PEAK 16(13Q12.12) MUTATED"   "DEL PEAK 16(13Q12.12) MUTATED" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
  "DEL PEAK 16(13Q12.12) MUTATED" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 16(13Q12.12) WILD-TYPE" "DEL PEAK 16(13Q12.12) WILD-TYPE" 
[1] "hr=" "1.3"
D38V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  DEL PEAK 16(13Q12.12) MUTATED   13        7
  DEL PEAK 16(13Q12.12) WILD-TYPE 29       15
D38V3, multiclass
          clus
vv         DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE
  T1                                  13                              29
  T2+T3+T4                             7                              15
D38V4, binary
                                 cls
clus                               0  1
  DEL PEAK 16(13Q12.12) MUTATED   11  9
  DEL PEAK 16(13Q12.12) WILD-TYPE 31 12
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 16(13Q12.12) MUTATED     11    9
  DEL PEAK 16(13Q12.12) WILD-TYPE   31   12
   clus
vv  DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE
  0                            11                              31
  1                             9                              12
                                 vv
clus                              M0 M1 MX
  DEL PEAK 16(13Q12.12) MUTATED   15  0  5
  DEL PEAK 16(13Q12.12) WILD-TYPE 25  2 16
D38V5, multiclass
    clus
vv   DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE
  M0                            15                              25
  M1                             0                               2
  MX                             5                              16
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 16(13Q12.12) MUTATED                                 22
  DEL PEAK 16(13Q12.12) WILD-TYPE                               36
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 16(13Q12.12) MUTATED                                               0
  DEL PEAK 16(13Q12.12) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 16(13Q12.12) MUTATED                                     0
  DEL PEAK 16(13Q12.12) WILD-TYPE                                   8
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 16(13Q12.12) MUTATED                                           0
  DEL PEAK 16(13Q12.12) WILD-TYPE                                         1
D38V6, multiclass
                                               clus
vv                                              DEL PEAK 16(13Q12.12) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                         22
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 0
                                               clus
vv                                              DEL PEAK 16(13Q12.12) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                           36
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                               1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                         8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                   1
D38V7, binary
                                 cls
clus                               0  1
  DEL PEAK 16(13Q12.12) MUTATED    5 17
  DEL PEAK 16(13Q12.12) WILD-TYPE  9 37
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 16(13Q12.12) MUTATED      5   17
  DEL PEAK 16(13Q12.12) WILD-TYPE    9   37
     clus
vv    DEL PEAK 16(13Q12.12) MUTATED DEL PEAK 16(13Q12.12) WILD-TYPE
  NO                              5                               9
  YES                            17                              37
D38V8, continuous
D38V9, continuous

Clustering(39) Variable = DEL PEAK 17(13Q14.2) MUTATION ANALYSIS
D39V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(13Q14.2) MUTATED   21  2
  DEL PEAK 17(13Q14.2) WILD-TYPE 35  8
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                            23                             43 
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                             2                              8 
$`DEL PEAK 17(13Q14.2) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1MI TCGA-DR-A0ZL TCGA-DS-A0VM TCGA-DS-A0VN 
       49.48        30.41        35.61        87.75        69.93        95.08 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A439 TCGA-EX-A1H5 TCGA-FU-A23L TCGA-FU-A3NI 
        6.02         0.26         0.66        16.44         1.22         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.58         1.48        25.41        21.67         8.02       147.35 
TCGA-IR-A3LH TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BE 
       78.67         0.10         0.89         0.07         0.07 

$`DEL PEAK 17(13Q14.2) WILD-TYPE`
TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       11.44        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
        2.43        40.93        78.31        58.88        36.76         2.66 
TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B 
        6.84         1.74         1.32         0.82         0.62         1.78 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.30         0.33         0.26         7.92         6.94         1.12 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3WB 
        1.22         0.99         2.17         0.07         1.02         0.79 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JK TCGA-IR-A3LA TCGA-IR-A3LB 
        3.48         1.35         1.02        20.78       124.27        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-MY-A5BD 
      117.40        96.92        81.96        26.56        36.36        29.72 
TCGA-MY-A5BF 
        4.34 

  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                        147.35                         177.04 
  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE 
                          8.02                           5.46 
[1] "0.1 - 147.3 (8.0)" "0.1 - 177.0 (5.5)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 17(13Q14.2) WILD-TYPE"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 17(13Q14.2) WILD-TYPE" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
  "DEL PEAK 17(13Q14.2) MUTATED"   "DEL PEAK 17(13Q14.2) MUTATED" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
  "DEL PEAK 17(13Q14.2) MUTATED" "DEL PEAK 17(13Q14.2) WILD-TYPE" 
[1] "hr=" "2.3"
D39V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 17(13Q14.2) MUTATED   16        8
  DEL PEAK 17(13Q14.2) WILD-TYPE 26       14
D39V3, multiclass
          clus
vv         DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  T1                                 16                             26
  T2+T3+T4                            8                             14
D39V4, binary
                                cls
clus                              0  1
  DEL PEAK 17(13Q14.2) MUTATED   14 10
  DEL PEAK 17(13Q14.2) WILD-TYPE 28 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(13Q14.2) MUTATED     14   10
  DEL PEAK 17(13Q14.2) WILD-TYPE   28   11
   clus
vv  DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  0                           14                             28
  1                           10                             11
                                vv
clus                             M0 M1 MX
  DEL PEAK 17(13Q14.2) MUTATED   17  0  7
  DEL PEAK 17(13Q14.2) WILD-TYPE 23  2 14
D39V5, multiclass
    clus
vv   DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  M0                           17                             23
  M1                            0                              2
  MX                            7                             14
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 17(13Q14.2) MUTATED                                 25
  DEL PEAK 17(13Q14.2) WILD-TYPE                               33
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 17(13Q14.2) MUTATED                                               0
  DEL PEAK 17(13Q14.2) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 17(13Q14.2) MUTATED                                     0
  DEL PEAK 17(13Q14.2) WILD-TYPE                                   8
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 17(13Q14.2) MUTATED                                           0
  DEL PEAK 17(13Q14.2) WILD-TYPE                                         1
D39V6, multiclass
                                               clus
vv                                              DEL PEAK 17(13Q14.2) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        25
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              DEL PEAK 17(13Q14.2) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          33
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D39V7, binary
                                cls
clus                              0  1
  DEL PEAK 17(13Q14.2) MUTATED    5 20
  DEL PEAK 17(13Q14.2) WILD-TYPE  9 34
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(13Q14.2) MUTATED      5   20
  DEL PEAK 17(13Q14.2) WILD-TYPE    9   34
     clus
vv    DEL PEAK 17(13Q14.2) MUTATED DEL PEAK 17(13Q14.2) WILD-TYPE
  NO                             5                              9
  YES                           20                             34
D39V8, continuous
D39V9, continuous

Clustering(40) Variable = DEL PEAK 18(14Q32.31) MUTATION ANALYSIS
D40V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 18(14Q32.31) MUTATED    9  0
  DEL PEAK 18(14Q32.31) WILD-TYPE 47 10
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                              9                              57 
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                              0                              10 
$`DEL PEAK 18(14Q32.31) MUTATED`
TCGA-C5-A1MF TCGA-EA-A3HQ TCGA-EA-A43B TCGA-FU-A23L TCGA-FU-A3TX TCGA-IR-A3LA 
       53.13         1.74         1.78         1.22         1.48       124.27 
TCGA-IR-A3LH TCGA-LP-A4AU TCGA-MY-A5BD 
       78.67         0.10        29.72 

$`DEL PEAK 18(14Q32.31) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL 
       67.46        35.61         2.43        40.93        78.31        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66        69.93        95.08         6.02 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
        6.84         0.26         1.32         0.82         0.62         0.66 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.30         0.33         0.26        16.44         7.92         6.94 
TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.12         1.22         0.99         2.17         0.07         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.45         1.58         0.79         3.48         1.35         1.02 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LB 
       25.41        21.67        20.78         8.02       147.35        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AW 
      117.40        96.92        81.96        26.56        36.36         0.89 
TCGA-LP-A4AX TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07         0.07         4.34 

  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                           0.10                            0.07 
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                         124.27                          177.04 
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                           1.78                            6.84 
[1] "0.1 - 124.3 (1.8)" "0.1 - 177.0 (6.8)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
  "DEL PEAK 18(14Q32.31) MUTATED" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"DEL PEAK 18(14Q32.31) WILD-TYPE"   "DEL PEAK 18(14Q32.31) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
[1] "hr="     "2.3e+08"
D40V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  DEL PEAK 18(14Q32.31) MUTATED    4        5
  DEL PEAK 18(14Q32.31) WILD-TYPE 38       17
D40V3, multiclass
          clus
vv         DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  T1                                   4                              38
  T2+T3+T4                             5                              17
D40V4, binary
                                 cls
clus                               0  1
  DEL PEAK 18(14Q32.31) MUTATED    8  1
  DEL PEAK 18(14Q32.31) WILD-TYPE 34 20
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(14Q32.31) MUTATED      8    1
  DEL PEAK 18(14Q32.31) WILD-TYPE   34   20
   clus
vv  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  0                             8                              34
  1                             1                              20
                                 vv
clus                              M0 M1 MX
  DEL PEAK 18(14Q32.31) MUTATED    7  0  2
  DEL PEAK 18(14Q32.31) WILD-TYPE 33  2 19
D40V5, multiclass
    clus
vv   DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  M0                             7                              33
  M1                             0                               2
  MX                             2                              19
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 18(14Q32.31) MUTATED                                  8
  DEL PEAK 18(14Q32.31) WILD-TYPE                               50
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 18(14Q32.31) MUTATED                                               0
  DEL PEAK 18(14Q32.31) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 18(14Q32.31) MUTATED                                     0
  DEL PEAK 18(14Q32.31) WILD-TYPE                                   8
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 18(14Q32.31) MUTATED                                           1
  DEL PEAK 18(14Q32.31) WILD-TYPE                                         0
D40V6, multiclass
                                               clus
vv                                              DEL PEAK 18(14Q32.31) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                          8
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 1
                                               clus
vv                                              DEL PEAK 18(14Q32.31) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                           50
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                               1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                         8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                   0
D40V7, binary
                                 cls
clus                               0  1
  DEL PEAK 18(14Q32.31) MUTATED    1  8
  DEL PEAK 18(14Q32.31) WILD-TYPE 13 46
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(14Q32.31) MUTATED      1    8
  DEL PEAK 18(14Q32.31) WILD-TYPE   13   46
     clus
vv    DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  NO                              1                              13
  YES                             8                              46
D40V8, continuous
[1] "Remove cluster labels:"        "DEL PEAK 18(14Q32.31) MUTATED"
clus
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                              2                              17 
                     TCGA-BI-A0VR                      TCGA-C5-A1BI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1MI 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-DR-A0ZM 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A5RQ                      TCGA-EX-A1H5 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3TQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3WB                      TCGA-FU-A3YQ 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 18(14Q32.31) WILD-TYPE" "DEL PEAK 18(14Q32.31) WILD-TYPE" 
                     TCGA-IR-A3LB 
"DEL PEAK 18(14Q32.31) WILD-TYPE" 
D40V9, continuous

Clustering(41) Variable = DEL PEAK 19(15Q15.1) MUTATION ANALYSIS
D41V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(15Q15.1) MUTATED   11  4
  DEL PEAK 19(15Q15.1) WILD-TYPE 45  6
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                            15                             51 
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                             4                              6 
$`DEL PEAK 19(15Q15.1) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-EA-A439 TCGA-EA-A43B TCGA-FU-A23L 
       30.41        40.93        87.75         0.66         1.78         1.22 
TCGA-FU-A3HY TCGA-FU-A40J TCGA-HM-A3JJ TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LH 
        0.07         1.35        21.67       124.27        66.81        78.67 
TCGA-IR-A3LK TCGA-LP-A4AX TCGA-MY-A5BD 
       26.56         0.07        29.72 

$`DEL PEAK 19(15Q15.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 
       49.48        11.44        36.56       177.04         5.46        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK 
       53.13        35.61         2.43        78.31        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QT 
        2.66        69.93        95.08         6.02         6.84         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A44S TCGA-EA-A4BA 
        1.74         1.32         0.82         0.62         0.30         0.33 
TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K 
        0.26        16.44         7.92         6.94         1.12         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        0.99         2.17         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 
        0.79         3.48         1.02        25.41        20.78         8.02 
TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU 
      147.35       117.40        96.92        81.96        36.36         0.10 
TCGA-LP-A4AW TCGA-MY-A5BE TCGA-MY-A5BF 
        0.89         0.07         4.34 

  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                        124.27                         177.04 
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                         26.56                           5.46 
[1] "0.1 - 124.3 (26.6)" "0.1 - 177.0 (5.5)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 19(15Q15.1) MUTATED"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 19(15Q15.1) MUTATED"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 19(15Q15.1) MUTATED"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 19(15Q15.1) MUTATED"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 19(15Q15.1) WILD-TYPE"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 19(15Q15.1) MUTATED"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 19(15Q15.1) MUTATED" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 19(15Q15.1) MUTATED"   "DEL PEAK 19(15Q15.1) MUTATED" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 19(15Q15.1) WILD-TYPE" "DEL PEAK 19(15Q15.1) WILD-TYPE" 
[1] "hr=" "1.7"
D41V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 19(15Q15.1) MUTATED    9        5
  DEL PEAK 19(15Q15.1) WILD-TYPE 33       17
D41V3, multiclass
          clus
vv         DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  T1                                  9                             33
  T2+T3+T4                            5                             17
D41V4, binary
                                cls
clus                              0  1
  DEL PEAK 19(15Q15.1) MUTATED   11  3
  DEL PEAK 19(15Q15.1) WILD-TYPE 31 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(15Q15.1) MUTATED     11    3
  DEL PEAK 19(15Q15.1) WILD-TYPE   31   18
   clus
vv  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  0                           11                             31
  1                            3                             18
                                vv
clus                             M0 M1 MX
  DEL PEAK 19(15Q15.1) MUTATED   10  0  4
  DEL PEAK 19(15Q15.1) WILD-TYPE 30  2 17
D41V5, multiclass
    clus
vv   DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  M0                           10                             30
  M1                            0                              2
  MX                            4                             17
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 19(15Q15.1) MUTATED                                 12
  DEL PEAK 19(15Q15.1) WILD-TYPE                               46
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 19(15Q15.1) MUTATED                                               0
  DEL PEAK 19(15Q15.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 19(15Q15.1) MUTATED                                     2
  DEL PEAK 19(15Q15.1) WILD-TYPE                                   6
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 19(15Q15.1) MUTATED                                           1
  DEL PEAK 19(15Q15.1) WILD-TYPE                                         0
D41V6, multiclass
                                               clus
vv                                              DEL PEAK 19(15Q15.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        12
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      2
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                1
                                               clus
vv                                              DEL PEAK 19(15Q15.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          46
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        6
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  0
D41V7, binary
                                cls
clus                              0  1
  DEL PEAK 19(15Q15.1) MUTATED    2 13
  DEL PEAK 19(15Q15.1) WILD-TYPE 12 41
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(15Q15.1) MUTATED      2   13
  DEL PEAK 19(15Q15.1) WILD-TYPE   12   41
     clus
vv    DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  NO                             2                             12
  YES                           13                             41
D41V8, continuous
D41V9, continuous

Clustering(42) Variable = DEL PEAK 20(16Q11.2) MUTATION ANALYSIS
D42V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(16Q11.2) MUTATED   10  2
  DEL PEAK 20(16Q11.2) WILD-TYPE 46  8
  DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE 
                            12                             54 
  DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE 
                             2                              8 
$`DEL PEAK 20(16Q11.2) MUTATED`
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A43B TCGA-EX-A1H6 TCGA-FU-A3TX 
        6.84         0.26         1.32         1.78         7.92         1.48 
TCGA-FU-A40J TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LK TCGA-MY-A5BF 
        1.35       124.27        66.81        96.92        26.56         4.34 

$`DEL PEAK 20(16Q11.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
       67.46        53.13        35.61         2.43        40.93        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       87.75        58.88        36.76         2.66        69.93        95.08 
TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A44S 
        6.02         1.74         0.82         0.62         0.66         0.30 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K 
        0.33         0.26        16.44         6.94         1.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.22         0.99         2.17         0.07         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.58         0.79         3.48         1.02        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI 
       20.78         8.02       147.35       117.40        78.67        81.96 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE 
       36.36         0.10         0.89         0.07        29.72         0.07 

  DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE 
                          0.26                           0.07 
  DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE 
                        124.27                         177.04 
  DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE 
                          5.59                           6.48 
[1] "0.3 - 124.3 (5.6)" "0.1 - 177.0 (6.5)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 20(16Q11.2) MUTATED"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 20(16Q11.2) MUTATED"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 20(16Q11.2) MUTATED"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 20(16Q11.2) MUTATED" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 20(16Q11.2) WILD-TYPE"   "DEL PEAK 20(16Q11.2) MUTATED" 
[1] "hr=" "1.2"
D42V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 20(16Q11.2) MUTATED   10        3
  DEL PEAK 20(16Q11.2) WILD-TYPE 32       19
D42V3, multiclass
          clus
vv         DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE
  T1                                 10                             32
  T2+T3+T4                            3                             19
D42V4, binary
                                cls
clus                              0  1
  DEL PEAK 20(16Q11.2) MUTATED   12  1
  DEL PEAK 20(16Q11.2) WILD-TYPE 30 20
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q11.2) MUTATED     12    1
  DEL PEAK 20(16Q11.2) WILD-TYPE   30   20
   clus
vv  DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE
  0                           12                             30
  1                            1                             20
                                vv
clus                             M0 M1 MX
  DEL PEAK 20(16Q11.2) MUTATED    9  0  4
  DEL PEAK 20(16Q11.2) WILD-TYPE 31  2 17
D42V5, multiclass
    clus
vv   DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE
  M0                            9                             31
  M1                            0                              2
  MX                            4                             17
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 20(16Q11.2) MUTATED                                  9
  DEL PEAK 20(16Q11.2) WILD-TYPE                               49
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 20(16Q11.2) MUTATED                                               1
  DEL PEAK 20(16Q11.2) WILD-TYPE                                             0
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 20(16Q11.2) MUTATED                                     3
  DEL PEAK 20(16Q11.2) WILD-TYPE                                   5
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 20(16Q11.2) MUTATED                                           1
  DEL PEAK 20(16Q11.2) WILD-TYPE                                         0
D42V6, multiclass
                                               clus
vv                                              DEL PEAK 20(16Q11.2) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                         9
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      3
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                1
                                               clus
vv                                              DEL PEAK 20(16Q11.2) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          49
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        5
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  0
D42V7, binary
                                cls
clus                              0  1
  DEL PEAK 20(16Q11.2) MUTATED    0 14
  DEL PEAK 20(16Q11.2) WILD-TYPE 14 40
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q11.2) MUTATED      0   14
  DEL PEAK 20(16Q11.2) WILD-TYPE   14   40
     clus
vv    DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE
  NO                             0                             14
  YES                           14                             40
D42V8, continuous
[1] "Remove cluster labels:"       "DEL PEAK 20(16Q11.2) MUTATED"
clus
  DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE 
                             2                             17 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1MF 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MN 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-EX-A1H5 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3TQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 20(16Q11.2) WILD-TYPE" "DEL PEAK 20(16Q11.2) WILD-TYPE" 
                    TCGA-IR-A3LH 
"DEL PEAK 20(16Q11.2) WILD-TYPE" 
D42V9, continuous

Clustering(43) Variable = DEL PEAK 21(16Q23.1) MUTATION ANALYSIS
D43V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(16Q23.1) MUTATED   10  1
  DEL PEAK 21(16Q23.1) WILD-TYPE 46  9
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            11                             55 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                             1                              9 
$`DEL PEAK 21(16Q23.1) MUTATED`
TCGA-DS-A3LQ TCGA-EA-A43B TCGA-EX-A1H6 TCGA-FU-A3EO TCGA-FU-A3TQ TCGA-FU-A3TX 
        6.02         1.78         7.92         2.17         1.58         1.48 
TCGA-FU-A40J TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-MY-A5BF 
        1.35       124.27        66.81        96.92         4.34 

$`DEL PEAK 21(16Q23.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
       67.46        53.13        35.61         2.43        40.93        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       87.75        58.88        36.76         2.66        69.93        95.08 
TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        6.84         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A3L1 
        0.66         0.30         0.33         0.26        16.44         6.94 
TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.12         1.22         1.22         0.99         0.07         1.02 
TCGA-FU-A3NI TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ 
        1.45         0.79         3.48         1.02        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI 
       20.78         8.02       147.35       117.40        78.67        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BD 
       26.56        36.36         0.10         0.89         0.07        29.72 
TCGA-MY-A5BE 
        0.07 

  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                          1.35                           0.07 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                        124.27                         177.04 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                          4.34                           6.94 
[1] "1.4 - 124.3 (4.3)" "0.1 - 177.0 (6.9)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
  "DEL PEAK 21(16Q23.1) MUTATED" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
  "DEL PEAK 21(16Q23.1) MUTATED"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK 21(16Q23.1) WILD-TYPE" "DEL PEAK 21(16Q23.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 21(16Q23.1) WILD-TYPE"   "DEL PEAK 21(16Q23.1) MUTATED" 
[1] "hr=" "1.6"
D43V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 21(16Q23.1) MUTATED    7        5
  DEL PEAK 21(16Q23.1) WILD-TYPE 35       17
D43V3, multiclass
          clus
vv         DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  T1                                  7                             35
  T2+T3+T4                            5                             17
D43V4, binary
                                cls
clus                              0  1
  DEL PEAK 21(16Q23.1) MUTATED    9  3
  DEL PEAK 21(16Q23.1) WILD-TYPE 33 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) MUTATED      9    3
  DEL PEAK 21(16Q23.1) WILD-TYPE   33   18
   clus
vv  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  0                            9                             33
  1                            3                             18
                                vv
clus                             M0 M1 MX
  DEL PEAK 21(16Q23.1) MUTATED    7  0  5
  DEL PEAK 21(16Q23.1) WILD-TYPE 33  2 16
D43V5, multiclass
    clus
vv   DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  M0                            7                             33
  M1                            0                              2
  MX                            5                             16
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 21(16Q23.1) MUTATED                                  7
  DEL PEAK 21(16Q23.1) WILD-TYPE                               51
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 21(16Q23.1) MUTATED                                               1
  DEL PEAK 21(16Q23.1) WILD-TYPE                                             0
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 21(16Q23.1) MUTATED                                     4
  DEL PEAK 21(16Q23.1) WILD-TYPE                                   4
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 21(16Q23.1) MUTATED                                           1
  DEL PEAK 21(16Q23.1) WILD-TYPE                                         0
D43V6, multiclass
                                               clus
vv                                              DEL PEAK 21(16Q23.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                         7
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      4
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                1
                                               clus
vv                                              DEL PEAK 21(16Q23.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          51
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        4
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  0
D43V7, binary
                                cls
clus                              0  1
  DEL PEAK 21(16Q23.1) MUTATED    1 12
  DEL PEAK 21(16Q23.1) WILD-TYPE 13 42
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) MUTATED      1   12
  DEL PEAK 21(16Q23.1) WILD-TYPE   13   42
     clus
vv    DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  NO                             1                             13
  YES                           12                             42
D43V8, continuous
D43V9, continuous

Clustering(44) Variable = DEL PEAK 22(17P12) MUTATION ANALYSIS
D44V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 22(17P12) MUTATED   14  5
  DEL PEAK 22(17P12) WILD-TYPE 42  5
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          19                           47 
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                           5                            5 
$`DEL PEAK 22(17P12) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-DS-A0VN 
        5.46        67.46        40.93        87.75         2.66        95.08 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A439 TCGA-EA-A44S TCGA-EX-A1H5 TCGA-EX-A3L1 
        6.02         0.26         0.66         0.30        16.44         6.94 
TCGA-FU-A3EO TCGA-FU-A3NI TCGA-IR-A3LB TCGA-IR-A3LH TCGA-IR-A3LK TCGA-LP-A4AU 
        2.17         1.45        66.81        78.67        26.56         0.10 
TCGA-LP-A4AW 
        0.89 

$`DEL PEAK 22(17P12) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1MF 
       49.48        30.41        11.44        36.56       177.04        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM 
       35.61         2.43        78.31        58.88        36.76        69.93 
TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B 
        6.84         1.74         1.32         0.82         0.62         1.78 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L 
        0.33         0.26         7.92         1.12         1.22         1.22 
TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        0.99         0.07         1.02         1.58         1.48         0.79 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        3.48         1.35         1.02        25.41        21.67        20.78 
TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI 
        8.02       147.35       124.27       117.40        96.92        81.96 
TCGA-IR-A3LL TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
       36.36         0.07        29.72         0.07         4.34 

  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                        0.10                         0.07 
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                       95.08                       177.04 
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                        6.02                         6.84 
[1] "0.1 - 95.1 (6.0)"  "0.1 - 177.0 (6.8)"
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A0TN                   TCGA-C5-A1BI 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-DS-A5RQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A1QT                   TCGA-EA-A3HQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HR                   TCGA-EA-A3HS 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EA-A3HT                   TCGA-EA-A439 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-EA-A43B                   TCGA-EA-A44S 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-EA-A4BA                   TCGA-EA-A50E 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A1H6 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-EX-A3L1                   TCGA-EX-A449 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-FU-A3TQ 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3TX                   TCGA-FU-A3WB 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A3YQ                   TCGA-FU-A40J 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-FU-A57G                   TCGA-HG-A2PA 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A3JJ                   TCGA-HM-A3JK 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-HM-A4S6                   TCGA-IR-A3L7 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LA                   TCGA-IR-A3LB 
"DEL PEAK 22(17P12) WILD-TYPE"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-IR-A3LC                   TCGA-IR-A3LF 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LH                   TCGA-IR-A3LI 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-IR-A3LK                   TCGA-IR-A3LL 
  "DEL PEAK 22(17P12) MUTATED" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-LP-A4AU                   TCGA-LP-A4AW 
  "DEL PEAK 22(17P12) MUTATED"   "DEL PEAK 22(17P12) MUTATED" 
                  TCGA-LP-A4AX                   TCGA-MY-A5BD 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
                  TCGA-MY-A5BE                   TCGA-MY-A5BF 
"DEL PEAK 22(17P12) WILD-TYPE" "DEL PEAK 22(17P12) WILD-TYPE" 
[1] "hr=" "2.2"
D44V2, continuous
                              vv
clus                           T1 T2+T3+T4
  DEL PEAK 22(17P12) MUTATED    9        8
  DEL PEAK 22(17P12) WILD-TYPE 33       14
D44V3, multiclass
          clus
vv         DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  T1                                9                           33
  T2+T3+T4                          8                           14
D44V4, binary
                              cls
clus                            0  1
  DEL PEAK 22(17P12) MUTATED   12  5
  DEL PEAK 22(17P12) WILD-TYPE 30 16
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) MUTATED     12    5
  DEL PEAK 22(17P12) WILD-TYPE   30   16
   clus
vv  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  0                         12                           30
  1                          5                           16
                              vv
clus                           M0 M1 MX
  DEL PEAK 22(17P12) MUTATED   14  0  3
  DEL PEAK 22(17P12) WILD-TYPE 26  2 18
D44V5, multiclass
    clus
vv   DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  M0                         14                           26
  M1                          0                            2
  MX                          3                           18
                              vv
clus                           CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 22(17P12) MUTATED                                 17
  DEL PEAK 22(17P12) WILD-TYPE                               41
                              vv
clus                           ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 22(17P12) MUTATED                                               0
  DEL PEAK 22(17P12) WILD-TYPE                                             1
                              vv
clus                           ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 22(17P12) MUTATED                                     2
  DEL PEAK 22(17P12) WILD-TYPE                                   6
                              vv
clus                           ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 22(17P12) MUTATED                                           0
  DEL PEAK 22(17P12) WILD-TYPE                                         1
D44V6, multiclass
                                               clus
vv                                              DEL PEAK 22(17P12) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                      17
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                          0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                    2
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                              0
                                               clus
vv                                              DEL PEAK 22(17P12) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                        41
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      6
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                1
D44V7, binary
                              cls
clus                            0  1
  DEL PEAK 22(17P12) MUTATED    5 14
  DEL PEAK 22(17P12) WILD-TYPE  9 40
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) MUTATED      5   14
  DEL PEAK 22(17P12) WILD-TYPE    9   40
     clus
vv    DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  NO                           5                            9
  YES                         14                           40
D44V8, continuous
D44V9, continuous

Clustering(45) Variable = DEL PEAK 23(17Q25.3) MUTATION ANALYSIS
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(17Q25.3) MUTATED    8  4
  DEL PEAK 23(17Q25.3) WILD-TYPE 48  6
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                            12                             54 
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                             4                              6 
$`DEL PEAK 23(17Q25.3) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1MN TCGA-DS-A0VK TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR 
        5.46        40.93        36.76        95.08         0.26         1.32 
TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-HM-A4S6 TCGA-IR-A3LK TCGA-LP-A4AX 
        0.07         1.45         1.58         8.02        26.56         0.07 

$`DEL PEAK 23(17Q25.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 
       49.48        30.41        11.44        36.56       177.04        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       53.13        35.61         2.43        78.31        87.75        58.88 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HS 
        2.66        69.93         6.02         6.84         1.74         0.82 
TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        0.62         0.66         1.78         0.30         0.33         0.26 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L 
       16.44         7.92         6.94         1.12         1.22         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.99         2.17         1.02         1.48         0.79         3.48 
TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3L7 
        1.35         1.02        25.41        21.67        20.78       147.35 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      124.27        66.81       117.40        96.92        78.67        81.96 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
       36.36         0.10         0.89        29.72         0.07         4.34 

  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                         95.08                         177.04 
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                          3.52                           6.89 
[1] "0.1 - 95.1 (3.5)"  "0.1 - 177.0 (6.9)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 23(17Q25.3) MUTATED"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 23(17Q25.3) MUTATED"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 23(17Q25.3) WILD-TYPE"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 23(17Q25.3) MUTATED"   "DEL PEAK 23(17Q25.3) MUTATED" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 23(17Q25.3) MUTATED" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 23(17Q25.3) WILD-TYPE" "DEL PEAK 23(17Q25.3) WILD-TYPE" 
[1] "hr=" "4.3"
D45V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 23(17Q25.3) MUTATED    9        2
  DEL PEAK 23(17Q25.3) WILD-TYPE 33       20
D45V3, multiclass
          clus
vv         DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  T1                                  9                             33
  T2+T3+T4                            2                             20
D45V4, binary
                                cls
clus                              0  1
  DEL PEAK 23(17Q25.3) MUTATED    6  5
  DEL PEAK 23(17Q25.3) WILD-TYPE 36 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(17Q25.3) MUTATED      6    5
  DEL PEAK 23(17Q25.3) WILD-TYPE   36   16
   clus
vv  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  0                            6                             36
  1                            5                             16
                                vv
clus                             M0 M1 MX
  DEL PEAK 23(17Q25.3) MUTATED    7  0  4
  DEL PEAK 23(17Q25.3) WILD-TYPE 33  2 17
D45V5, multiclass
    clus
vv   DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  M0                            7                             33
  M1                            0                              2
  MX                            4                             17
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 23(17Q25.3) MUTATED                                 13
  DEL PEAK 23(17Q25.3) WILD-TYPE                               45
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 23(17Q25.3) MUTATED                                               0
  DEL PEAK 23(17Q25.3) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 23(17Q25.3) MUTATED                                     0
  DEL PEAK 23(17Q25.3) WILD-TYPE                                   8
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 23(17Q25.3) MUTATED                                           0
  DEL PEAK 23(17Q25.3) WILD-TYPE                                         1
D45V6, multiclass
                                               clus
vv                                              DEL PEAK 23(17Q25.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        13
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              DEL PEAK 23(17Q25.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          45
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D45V7, binary
                                cls
clus                              0  1
  DEL PEAK 23(17Q25.3) MUTATED    3 10
  DEL PEAK 23(17Q25.3) WILD-TYPE 11 44
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(17Q25.3) MUTATED      3   10
  DEL PEAK 23(17Q25.3) WILD-TYPE   11   44
     clus
vv    DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  NO                             3                             11
  YES                           10                             44
D45V8, continuous
D45V9, continuous

Clustering(46) Variable = DEL PEAK 24(19P13.3) MUTATION ANALYSIS
D46V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(19P13.3) MUTATED   11  4
  DEL PEAK 24(19P13.3) WILD-TYPE 45  6
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                            15                             51 
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                             4                              6 
$`DEL PEAK 24(19P13.3) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DS-A0VM 
       11.44         5.46        53.13        35.61        40.93        69.93 
TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A439 TCGA-EA-A43B TCGA-FU-A23L 
       95.08         6.84         0.26         0.66         1.78         1.22 
TCGA-HM-A4S6 TCGA-IR-A3LC TCGA-LP-A4AX 
        8.02       117.40         0.07 

$`DEL PEAK 24(19P13.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MK 
       49.48        30.41        36.56       177.04        67.46         2.43 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A3LQ 
       78.31        87.75        58.88        36.76         2.66         6.02 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A44S TCGA-EA-A4BA 
        1.74         1.32         0.82         0.62         0.30         0.33 
TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K 
        0.26        16.44         7.92         6.94         1.12         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.99         2.17         0.07         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA 
        1.48         0.79         3.48         1.35         1.02        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF 
       21.67        20.78       147.35       124.27        66.81        96.92 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW 
       78.67        81.96        26.56        36.36         0.10         0.89 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
       29.72         0.07         4.34 

  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                        117.40                         177.04 
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                          8.02                           4.34 
[1] "0.1 - 117.4 (8.0)" "0.1 - 177.0 (4.3)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 24(19P13.3) MUTATED"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 24(19P13.3) MUTATED"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 24(19P13.3) MUTATED"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 24(19P13.3) WILD-TYPE"   "DEL PEAK 24(19P13.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 24(19P13.3) MUTATED" "DEL PEAK 24(19P13.3) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 24(19P13.3) WILD-TYPE" "DEL PEAK 24(19P13.3) WILD-TYPE" 
[1] "hr=" "1.9"
D46V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 24(19P13.3) MUTATED   11        2
  DEL PEAK 24(19P13.3) WILD-TYPE 31       20
D46V3, multiclass
          clus
vv         DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  T1                                 11                             31
  T2+T3+T4                            2                             20
D46V4, binary
                                cls
clus                              0  1
  DEL PEAK 24(19P13.3) MUTATED    9  4
  DEL PEAK 24(19P13.3) WILD-TYPE 33 17
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) MUTATED      9    4
  DEL PEAK 24(19P13.3) WILD-TYPE   33   17
   clus
vv  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  0                            9                             33
  1                            4                             17
                                vv
clus                             M0 M1 MX
  DEL PEAK 24(19P13.3) MUTATED    8  0  5
  DEL PEAK 24(19P13.3) WILD-TYPE 32  2 16
D46V5, multiclass
    clus
vv   DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  M0                            8                             32
  M1                            0                              2
  MX                            5                             16
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 24(19P13.3) MUTATED                                 16
  DEL PEAK 24(19P13.3) WILD-TYPE                               42
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 24(19P13.3) MUTATED                                               0
  DEL PEAK 24(19P13.3) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 24(19P13.3) MUTATED                                     0
  DEL PEAK 24(19P13.3) WILD-TYPE                                   8
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 24(19P13.3) MUTATED                                           0
  DEL PEAK 24(19P13.3) WILD-TYPE                                         1
D46V6, multiclass
                                               clus
vv                                              DEL PEAK 24(19P13.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        16
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      0
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              DEL PEAK 24(19P13.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          42
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        8
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D46V7, binary
                                cls
clus                              0  1
  DEL PEAK 24(19P13.3) MUTATED    6 10
  DEL PEAK 24(19P13.3) WILD-TYPE  8 44
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) MUTATED      6   10
  DEL PEAK 24(19P13.3) WILD-TYPE    8   44
     clus
vv    DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  NO                             6                              8
  YES                           10                             44
D46V8, continuous
D46V9, continuous

Clustering(47) Variable = DEL PEAK 25(19Q13.33) MUTATION ANALYSIS
D47V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 25(19Q13.33) MUTATED    8  0
  DEL PEAK 25(19Q13.33) WILD-TYPE 48 10
  DEL PEAK 25(19Q13.33) MUTATED DEL PEAK 25(19Q13.33) WILD-TYPE 
                              8                              58 
  DEL PEAK 25(19Q13.33) MUTATED DEL PEAK 25(19Q13.33) WILD-TYPE 
                              0                              10 
$`DEL PEAK 25(19Q13.33) MUTATED`
TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR TCGA-FU-A3NI TCGA-IR-A3LC TCGA-IR-A3LH 
       95.08         0.26         1.32         1.45       117.40        78.67 
TCGA-IR-A3LI TCGA-MY-A5BD 
       81.96        29.72 

$`DEL PEAK 25(19Q13.33) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN 
       49.48        30.41        11.44        36.56       177.04         5.46 
TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
       67.46        53.13        35.61         2.43        40.93        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ 
       87.75        58.88        36.76         2.66        69.93         6.02 
TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B 
        6.84         1.74         0.82         0.62         0.66         1.78 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.30         0.33         0.26        16.44         7.92         6.94 
TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        1.12         1.22         1.22         0.99         2.17         0.07 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        1.02         1.58         1.48         0.79         3.48         1.35 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.02        25.41        21.67        20.78         8.02       147.35 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU 
      124.27        66.81        96.92        26.56        36.36         0.10 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MY-A5BE TCGA-MY-A5BF 
        0.89         0.07         0.07         4.34 

  DEL PEAK 25(19Q13.33) MUTATED DEL PEAK 25(19Q13.33) WILD-TYPE 
                           0.26                            0.07 
  DEL PEAK 25(19Q13.33) MUTATED DEL PEAK 25(19Q13.33) WILD-TYPE 
                         117.40                          177.04 
  DEL PEAK 25(19Q13.33) MUTATED DEL PEAK 25(19Q13.33) WILD-TYPE 
                         54.195                           5.740 
[1] "0.3 - 117.4 (54.2)" "0.1 - 177.0 (5.7)" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 25(19Q13.33) WILD-TYPE"   "DEL PEAK 25(19Q13.33) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 25(19Q13.33) MUTATED" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "DEL PEAK 25(19Q13.33) MUTATED" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "DEL PEAK 25(19Q13.33) MUTATED" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
  "DEL PEAK 25(19Q13.33) MUTATED" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 25(19Q13.33) MUTATED"   "DEL PEAK 25(19Q13.33) MUTATED" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"DEL PEAK 25(19Q13.33) WILD-TYPE"   "DEL PEAK 25(19Q13.33) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 25(19Q13.33) WILD-TYPE"   "DEL PEAK 25(19Q13.33) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 25(19Q13.33) MUTATED" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "DEL PEAK 25(19Q13.33) MUTATED" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "DEL PEAK 25(19Q13.33) MUTATED" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
  "DEL PEAK 25(19Q13.33) MUTATED" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 25(19Q13.33) MUTATED"   "DEL PEAK 25(19Q13.33) MUTATED" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"DEL PEAK 25(19Q13.33) WILD-TYPE"   "DEL PEAK 25(19Q13.33) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 25(19Q13.33) WILD-TYPE"   "DEL PEAK 25(19Q13.33) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 25(19Q13.33) MUTATED" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "DEL PEAK 25(19Q13.33) MUTATED" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
  "DEL PEAK 25(19Q13.33) MUTATED" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
  "DEL PEAK 25(19Q13.33) MUTATED" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
  "DEL PEAK 25(19Q13.33) MUTATED"   "DEL PEAK 25(19Q13.33) MUTATED" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"DEL PEAK 25(19Q13.33) WILD-TYPE"   "DEL PEAK 25(19Q13.33) MUTATED" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
[1] "hr="     "2.8e+08"
D47V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  DEL PEAK 25(19Q13.33) MUTATED    4        4
  DEL PEAK 25(19Q13.33) WILD-TYPE 38       18
D47V3, multiclass
          clus
vv         DEL PEAK 25(19Q13.33) MUTATED DEL PEAK 25(19Q13.33) WILD-TYPE
  T1                                   4                              38
  T2+T3+T4                             4                              18
D47V4, binary
                                 cls
clus                               0  1
  DEL PEAK 25(19Q13.33) MUTATED    6  2
  DEL PEAK 25(19Q13.33) WILD-TYPE 36 19
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(19Q13.33) MUTATED      6    2
  DEL PEAK 25(19Q13.33) WILD-TYPE   36   19
   clus
vv  DEL PEAK 25(19Q13.33) MUTATED DEL PEAK 25(19Q13.33) WILD-TYPE
  0                             6                              36
  1                             2                              19
                                 vv
clus                              M0 M1 MX
  DEL PEAK 25(19Q13.33) MUTATED    6  1  1
  DEL PEAK 25(19Q13.33) WILD-TYPE 34  1 20
D47V5, multiclass
    clus
vv   DEL PEAK 25(19Q13.33) MUTATED DEL PEAK 25(19Q13.33) WILD-TYPE
  M0                             6                              34
  M1                             1                               1
  MX                             1                              20
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 25(19Q13.33) MUTATED                                  7
  DEL PEAK 25(19Q13.33) WILD-TYPE                               51
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 25(19Q13.33) MUTATED                                               0
  DEL PEAK 25(19Q13.33) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 25(19Q13.33) MUTATED                                     1
  DEL PEAK 25(19Q13.33) WILD-TYPE                                   7
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 25(19Q13.33) MUTATED                                           0
  DEL PEAK 25(19Q13.33) WILD-TYPE                                         1
D47V6, multiclass
                                               clus
vv                                              DEL PEAK 25(19Q13.33) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                          7
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 0
                                               clus
vv                                              DEL PEAK 25(19Q13.33) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                           51
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                               1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                         7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                   1
D47V7, binary
                                 cls
clus                               0  1
  DEL PEAK 25(19Q13.33) MUTATED    1  7
  DEL PEAK 25(19Q13.33) WILD-TYPE 13 47
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(19Q13.33) MUTATED      1    7
  DEL PEAK 25(19Q13.33) WILD-TYPE   13   47
     clus
vv    DEL PEAK 25(19Q13.33) MUTATED DEL PEAK 25(19Q13.33) WILD-TYPE
  NO                              1                              13
  YES                             7                              47
D47V8, continuous
[1] "Remove cluster labels:"        "DEL PEAK 25(19Q13.33) MUTATED"
clus
  DEL PEAK 25(19Q13.33) MUTATED DEL PEAK 25(19Q13.33) WILD-TYPE 
                              1                              18 
                     TCGA-BI-A0VR                      TCGA-C5-A1BI 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1BN                      TCGA-C5-A1MF 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MN 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-DS-A5RQ 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-FU-A2QG 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3EO                      TCGA-FU-A3HY 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3TQ                      TCGA-FU-A3WB 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-HM-A4S6 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
                     TCGA-IR-A3L7                      TCGA-IR-A3LB 
"DEL PEAK 25(19Q13.33) WILD-TYPE" "DEL PEAK 25(19Q13.33) WILD-TYPE" 
D47V9, continuous

Clustering(48) Variable = DEL PEAK 26(20P12.1) MUTATION ANALYSIS
D48V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(20P12.1) MUTATED    9  2
  DEL PEAK 26(20P12.1) WILD-TYPE 47  8
  DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE 
                            11                             55 
  DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE 
                             2                              8 
$`DEL PEAK 26(20P12.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-EA-A1QT TCGA-EA-A50E TCGA-EX-A1H6 TCGA-FU-A3EO 
       49.48       177.04         0.26         0.26         7.92         2.17 
TCGA-FU-A3HY TCGA-IR-A3LB TCGA-IR-A3LK TCGA-LP-A4AX TCGA-MY-A5BF 
        0.07        66.81        26.56         0.07         4.34 

$`DEL PEAK 26(20P12.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       30.41        11.44        36.56         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ 
       36.76         2.66        69.93        95.08         6.02         6.84 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B 
        1.74         1.32         0.82         0.62         0.66         1.78 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K 
        0.30         0.33        16.44         6.94         1.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        1.22         0.99         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ 
        0.79         3.48         1.35         1.02        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LF 
       20.78         8.02       147.35       124.27       117.40        96.92 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MY-A5BD 
       78.67        81.96        36.36         0.10         0.89        29.72 
TCGA-MY-A5BE 
        0.07 

  DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE 
                        177.04                         147.35 
  DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE 
                          4.34                           6.84 
[1] "0.1 - 177.0 (4.3)" "0.1 - 147.3 (6.8)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 26(20P12.1) WILD-TYPE" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
  "DEL PEAK 26(20P12.1) MUTATED" "DEL PEAK 26(20P12.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 26(20P12.1) WILD-TYPE"   "DEL PEAK 26(20P12.1) MUTATED" 
[1] "hr=" "1.4"
D48V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 26(20P12.1) MUTATED    8        4
  DEL PEAK 26(20P12.1) WILD-TYPE 34       18
D48V3, multiclass
          clus
vv         DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  T1                                  8                             34
  T2+T3+T4                            4                             18
D48V4, binary
                                cls
clus                              0  1
  DEL PEAK 26(20P12.1) MUTATED    9  3
  DEL PEAK 26(20P12.1) WILD-TYPE 33 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(20P12.1) MUTATED      9    3
  DEL PEAK 26(20P12.1) WILD-TYPE   33   18
   clus
vv  DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  0                            9                             33
  1                            3                             18
                                vv
clus                             M0 M1 MX
  DEL PEAK 26(20P12.1) MUTATED    7  0  5
  DEL PEAK 26(20P12.1) WILD-TYPE 33  2 16
D48V5, multiclass
    clus
vv   DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  M0                            7                             33
  M1                            0                              2
  MX                            5                             16
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 26(20P12.1) MUTATED                                 10
  DEL PEAK 26(20P12.1) WILD-TYPE                               48
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 26(20P12.1) MUTATED                                               0
  DEL PEAK 26(20P12.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 26(20P12.1) MUTATED                                     3
  DEL PEAK 26(20P12.1) WILD-TYPE                                   5
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 26(20P12.1) MUTATED                                           0
  DEL PEAK 26(20P12.1) WILD-TYPE                                         1
D48V6, multiclass
                                               clus
vv                                              DEL PEAK 26(20P12.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        10
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      3
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              DEL PEAK 26(20P12.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          48
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        5
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D48V7, binary
                                cls
clus                              0  1
  DEL PEAK 26(20P12.1) MUTATED    0 13
  DEL PEAK 26(20P12.1) WILD-TYPE 14 41
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(20P12.1) MUTATED      0   13
  DEL PEAK 26(20P12.1) WILD-TYPE   14   41
     clus
vv    DEL PEAK 26(20P12.1) MUTATED DEL PEAK 26(20P12.1) WILD-TYPE
  NO                             0                             14
  YES                           13                             41
D48V8, continuous
D48V9, continuous

Clustering(49) Variable = DEL PEAK 27(21Q21.1) MUTATION ANALYSIS
D49V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 27(21Q21.1) MUTATED   11  3
  DEL PEAK 27(21Q21.1) WILD-TYPE 45  7
  DEL PEAK 27(21Q21.1) MUTATED DEL PEAK 27(21Q21.1) WILD-TYPE 
                            14                             52 
  DEL PEAK 27(21Q21.1) MUTATED DEL PEAK 27(21Q21.1) WILD-TYPE 
                             3                              7 
$`DEL PEAK 27(21Q21.1) MUTATED`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-EA-A1QT TCGA-EA-A3HR 
       30.41        11.44        87.75         2.66         0.26         1.32 
TCGA-EA-A439 TCGA-EA-A50E TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI 
        0.66         0.26         6.94         1.22         0.07         1.45 
TCGA-HM-A3JJ TCGA-IR-A3LB 
       21.67        66.81 

$`DEL PEAK 27(21Q21.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        36.56       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK 
       35.61         2.43        40.93        78.31        58.88        36.76 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HS 
       69.93        95.08         6.02         6.84         1.74         0.82 
TCGA-EA-A3HT TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.62         1.78         0.30         0.33        16.44         7.92 
TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3TQ 
        1.12         1.22         0.99         2.17         1.02         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA 
        1.48         0.79         3.48         1.35         1.02        25.41 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LF 
       20.78         8.02       147.35       124.27       117.40        96.92 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW 
       78.67        81.96        26.56        36.36         0.10         0.89 
TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07        29.72         0.07         4.34 

  DEL PEAK 27(21Q21.1) MUTATED DEL PEAK 27(21Q21.1) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 27(21Q21.1) MUTATED DEL PEAK 27(21Q21.1) WILD-TYPE 
                         87.75                         177.04 
  DEL PEAK 27(21Q21.1) MUTATED DEL PEAK 27(21Q21.1) WILD-TYPE 
                         2.055                          7.380 
[1] "0.1 - 87.8 (2.1)"  "0.1 - 177.0 (7.4)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
  "DEL PEAK 27(21Q21.1) MUTATED" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 27(21Q21.1) WILD-TYPE"   "DEL PEAK 27(21Q21.1) MUTATED" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
[1] "hr=" "2.8"
D49V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 27(21Q21.1) MUTATED    9        5
  DEL PEAK 27(21Q21.1) WILD-TYPE 33       17
D49V3, multiclass
          clus
vv         DEL PEAK 27(21Q21.1) MUTATED DEL PEAK 27(21Q21.1) WILD-TYPE
  T1                                  9                             33
  T2+T3+T4                            5                             17
D49V4, binary
                                cls
clus                              0  1
  DEL PEAK 27(21Q21.1) MUTATED    9  5
  DEL PEAK 27(21Q21.1) WILD-TYPE 33 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(21Q21.1) MUTATED      9    5
  DEL PEAK 27(21Q21.1) WILD-TYPE   33   16
   clus
vv  DEL PEAK 27(21Q21.1) MUTATED DEL PEAK 27(21Q21.1) WILD-TYPE
  0                            9                             33
  1                            5                             16
                                vv
clus                             M0 M1 MX
  DEL PEAK 27(21Q21.1) MUTATED    9  0  5
  DEL PEAK 27(21Q21.1) WILD-TYPE 31  2 16
D49V5, multiclass
    clus
vv   DEL PEAK 27(21Q21.1) MUTATED DEL PEAK 27(21Q21.1) WILD-TYPE
  M0                            9                             31
  M1                            0                              2
  MX                            5                             16
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 27(21Q21.1) MUTATED                                 13
  DEL PEAK 27(21Q21.1) WILD-TYPE                               45
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 27(21Q21.1) MUTATED                                               0
  DEL PEAK 27(21Q21.1) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 27(21Q21.1) MUTATED                                     1
  DEL PEAK 27(21Q21.1) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 27(21Q21.1) MUTATED                                           0
  DEL PEAK 27(21Q21.1) WILD-TYPE                                         1
D49V6, multiclass
                                               clus
vv                                              DEL PEAK 27(21Q21.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        13
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              DEL PEAK 27(21Q21.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          45
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D49V7, binary
                                cls
clus                              0  1
  DEL PEAK 27(21Q21.1) MUTATED    2 12
  DEL PEAK 27(21Q21.1) WILD-TYPE 12 42
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(21Q21.1) MUTATED      2   12
  DEL PEAK 27(21Q21.1) WILD-TYPE   12   42
     clus
vv    DEL PEAK 27(21Q21.1) MUTATED DEL PEAK 27(21Q21.1) WILD-TYPE
  NO                             2                             12
  YES                           12                             42
D49V8, continuous
[1] "Remove cluster labels:"       "DEL PEAK 27(21Q21.1) MUTATED"
clus
  DEL PEAK 27(21Q21.1) MUTATED DEL PEAK 27(21Q21.1) WILD-TYPE 
                             2                             17 
                    TCGA-BI-A0VR                     TCGA-C5-A1BI 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1BN                     TCGA-C5-A1MF 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MN 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A5RQ 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-FU-A2QG 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3EO                     TCGA-FU-A3TQ 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3WB                     TCGA-FU-A3YQ 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 27(21Q21.1) WILD-TYPE" "DEL PEAK 27(21Q21.1) WILD-TYPE" 
                    TCGA-IR-A3LH 
"DEL PEAK 27(21Q21.1) WILD-TYPE" 
D49V9, continuous

Clustering(50) Variable = DEL PEAK 28(22Q13.32) MUTATION ANALYSIS
D50V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 28(22Q13.32) MUTATED   12  4
  DEL PEAK 28(22Q13.32) WILD-TYPE 44  6
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                             16                              50 
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                              4                               6 
$`DEL PEAK 28(22Q13.32) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1MN TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A439 
        5.46        40.93        95.08         0.26         1.32         0.66 
TCGA-EA-A44S TCGA-EX-A1H5 TCGA-FU-A23K TCGA-FU-A3HY TCGA-HM-A3JJ TCGA-HM-A4S6 
        0.30        16.44         1.22         0.07        21.67         8.02 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-LP-A4AW 
      124.27        66.81       117.40         0.89 

$`DEL PEAK 28(22Q13.32) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1M5 
       49.48        30.41        11.44        36.56       177.04        67.46 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       53.13        35.61         2.43        78.31        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A3HQ 
       36.76         2.66        69.93         6.02         6.84         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A1H6 
        0.82         0.62         1.78         0.33         0.26         7.92 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ 
        6.94         1.12         1.22         0.99         2.17         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        1.45         1.58         1.48         0.79         3.48         1.35 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK TCGA-IR-A3L7 TCGA-IR-A3LF TCGA-IR-A3LH 
        1.02        25.41        20.78       147.35        96.92        78.67 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MY-A5BD 
       81.96        26.56        36.36         0.10         0.07        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07         4.34 

  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                           0.07                            0.07 
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                         124.27                          177.04 
  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE 
                           6.74                            6.43 
[1] "0.1 - 124.3 (6.7)" "0.1 - 177.0 (6.4)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A0TN                      TCGA-C5-A1BI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-DS-A5RQ 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A1QT                      TCGA-EA-A3HQ 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HR                      TCGA-EA-A3HS 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EA-A3HT                      TCGA-EA-A439 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-EA-A43B                      TCGA-EA-A44S 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-EA-A4BA                      TCGA-EA-A50E 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A1H6 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-EX-A3L1                      TCGA-EX-A449 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-FU-A3TQ 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3TX                      TCGA-FU-A3WB 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A3YQ                      TCGA-FU-A40J 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-FU-A57G                      TCGA-HG-A2PA 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-HM-A3JJ                      TCGA-HM-A3JK 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-HM-A4S6                      TCGA-IR-A3L7 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LA                      TCGA-IR-A3LB 
  "DEL PEAK 28(22Q13.32) MUTATED"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-IR-A3LC                      TCGA-IR-A3LF 
  "DEL PEAK 28(22Q13.32) MUTATED" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LH                      TCGA-IR-A3LI 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-IR-A3LK                      TCGA-IR-A3LL 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-LP-A4AU                      TCGA-LP-A4AW 
"DEL PEAK 28(22Q13.32) WILD-TYPE"   "DEL PEAK 28(22Q13.32) MUTATED" 
                     TCGA-LP-A4AX                      TCGA-MY-A5BD 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
                     TCGA-MY-A5BE                      TCGA-MY-A5BF 
"DEL PEAK 28(22Q13.32) WILD-TYPE" "DEL PEAK 28(22Q13.32) WILD-TYPE" 
[1] "hr=" "2"  
D50V2, continuous
                                 vv
clus                              T1 T2+T3+T4
  DEL PEAK 28(22Q13.32) MUTATED   10        4
  DEL PEAK 28(22Q13.32) WILD-TYPE 32       18
D50V3, multiclass
          clus
vv         DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  T1                                  10                              32
  T2+T3+T4                             4                              18
D50V4, binary
                                 cls
clus                               0  1
  DEL PEAK 28(22Q13.32) MUTATED    8  6
  DEL PEAK 28(22Q13.32) WILD-TYPE 34 15
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(22Q13.32) MUTATED      8    6
  DEL PEAK 28(22Q13.32) WILD-TYPE   34   15
   clus
vv  DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  0                             8                              34
  1                             6                              15
                                 vv
clus                              M0 M1 MX
  DEL PEAK 28(22Q13.32) MUTATED    9  0  5
  DEL PEAK 28(22Q13.32) WILD-TYPE 31  2 16
D50V5, multiclass
    clus
vv   DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  M0                             9                              31
  M1                             0                               2
  MX                             5                              16
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 28(22Q13.32) MUTATED                                 14
  DEL PEAK 28(22Q13.32) WILD-TYPE                               44
                                 vv
clus                              ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 28(22Q13.32) MUTATED                                               0
  DEL PEAK 28(22Q13.32) WILD-TYPE                                             1
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 28(22Q13.32) MUTATED                                     1
  DEL PEAK 28(22Q13.32) WILD-TYPE                                   7
                                 vv
clus                              ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 28(22Q13.32) MUTATED                                           1
  DEL PEAK 28(22Q13.32) WILD-TYPE                                         0
D50V6, multiclass
                                               clus
vv                                              DEL PEAK 28(22Q13.32) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                         14
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 1
                                               clus
vv                                              DEL PEAK 28(22Q13.32) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                           44
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                               1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                         7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                   0
D50V7, binary
                                 cls
clus                               0  1
  DEL PEAK 28(22Q13.32) MUTATED    5 11
  DEL PEAK 28(22Q13.32) WILD-TYPE  9 43
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(22Q13.32) MUTATED      5   11
  DEL PEAK 28(22Q13.32) WILD-TYPE    9   43
     clus
vv    DEL PEAK 28(22Q13.32) MUTATED DEL PEAK 28(22Q13.32) WILD-TYPE
  NO                              5                               9
  YES                            11                              43
D50V8, continuous
D50V9, continuous

Clustering(51) Variable = DEL PEAK 29(XP11.3) MUTATION ANALYSIS
D51V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 29(XP11.3) MUTATED   16  5
  DEL PEAK 29(XP11.3) WILD-TYPE 40  5
  DEL PEAK 29(XP11.3) MUTATED DEL PEAK 29(XP11.3) WILD-TYPE 
                           21                            45 
  DEL PEAK 29(XP11.3) MUTATED DEL PEAK 29(XP11.3) WILD-TYPE 
                            5                             5 
$`DEL PEAK 29(XP11.3) MUTATED`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MN 
       30.41        11.44       177.04         5.46        53.13        40.93 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A43B TCGA-EA-A44S 
       95.08         6.02         0.26         1.32         1.78         0.30 
TCGA-EX-A1H5 TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3NI TCGA-IR-A3LA TCGA-IR-A3LB 
       16.44         0.99         0.07         1.45       124.27        66.81 
TCGA-IR-A3LK TCGA-LP-A4AW TCGA-MY-A5BF 
       26.56         0.89         4.34 

$`DEL PEAK 29(XP11.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY 
       49.48        36.56        67.46        35.61         2.43        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A5RQ 
       87.75        58.88        36.76         2.66        69.93         6.84 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A4BA TCGA-EA-A50E 
        1.74         0.82         0.62         0.66         0.33         0.26 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO 
        7.92         6.94         1.12         1.22         1.22         2.17 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        1.02         1.58         1.48         0.79         3.48         1.35 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.02        25.41        21.67        20.78         8.02       147.35 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU 
      117.40        96.92        78.67        81.96        36.36         0.10 
TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE 
        0.07        29.72         0.07 

  DEL PEAK 29(XP11.3) MUTATED DEL PEAK 29(XP11.3) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK 29(XP11.3) MUTATED DEL PEAK 29(XP11.3) WILD-TYPE 
                       177.04                        147.35 
  DEL PEAK 29(XP11.3) MUTATED DEL PEAK 29(XP11.3) WILD-TYPE 
                         6.02                          6.84 
[1] "0.1 - 177.0 (6.0)" "0.1 - 147.3 (6.8)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK 29(XP11.3) MUTATED"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "DEL PEAK 29(XP11.3) MUTATED"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK 29(XP11.3) MUTATED"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK 29(XP11.3) MUTATED"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "DEL PEAK 29(XP11.3) MUTATED"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK 29(XP11.3) MUTATED"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-C5-A0TN                    TCGA-C5-A1BI 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK 29(XP11.3) MUTATED"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-DS-A5RQ 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EA-A1QT                    TCGA-EA-A3HQ 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HR                    TCGA-EA-A3HS 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EA-A3HT                    TCGA-EA-A439 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EA-A43B                    TCGA-EA-A44S 
  "DEL PEAK 29(XP11.3) MUTATED"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-EA-A4BA                    TCGA-EA-A50E 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A1H6 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-EX-A3L1                    TCGA-EX-A449 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-FU-A3TQ 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3TX                    TCGA-FU-A3WB 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3YQ                    TCGA-FU-A40J 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-FU-A57G                    TCGA-HG-A2PA 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-HM-A3JJ                    TCGA-HM-A3JK 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-HM-A4S6                    TCGA-IR-A3L7 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LA                    TCGA-IR-A3LB 
  "DEL PEAK 29(XP11.3) MUTATED"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-IR-A3LC                    TCGA-IR-A3LF 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LH                    TCGA-IR-A3LI 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-IR-A3LK                    TCGA-IR-A3LL 
  "DEL PEAK 29(XP11.3) MUTATED" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-LP-A4AU                    TCGA-LP-A4AW 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
                   TCGA-LP-A4AX                    TCGA-MY-A5BD 
"DEL PEAK 29(XP11.3) WILD-TYPE" "DEL PEAK 29(XP11.3) WILD-TYPE" 
                   TCGA-MY-A5BE                    TCGA-MY-A5BF 
"DEL PEAK 29(XP11.3) WILD-TYPE"   "DEL PEAK 29(XP11.3) MUTATED" 
[1] "hr=" "2.1"
D51V2, continuous
                               vv
clus                            T1 T2+T3+T4
  DEL PEAK 29(XP11.3) MUTATED   14        5
  DEL PEAK 29(XP11.3) WILD-TYPE 28       17
D51V3, multiclass
          clus
vv         DEL PEAK 29(XP11.3) MUTATED DEL PEAK 29(XP11.3) WILD-TYPE
  T1                                14                            28
  T2+T3+T4                           5                            17
D51V4, binary
                               cls
clus                             0  1
  DEL PEAK 29(XP11.3) MUTATED   13  6
  DEL PEAK 29(XP11.3) WILD-TYPE 29 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 29(XP11.3) MUTATED     13    6
  DEL PEAK 29(XP11.3) WILD-TYPE   29   15
   clus
vv  DEL PEAK 29(XP11.3) MUTATED DEL PEAK 29(XP11.3) WILD-TYPE
  0                          13                            29
  1                           6                            15
                               vv
clus                            M0 M1 MX
  DEL PEAK 29(XP11.3) MUTATED   11  0  7
  DEL PEAK 29(XP11.3) WILD-TYPE 29  2 14
D51V5, multiclass
    clus
vv   DEL PEAK 29(XP11.3) MUTATED DEL PEAK 29(XP11.3) WILD-TYPE
  M0                          11                            29
  M1                           0                             2
  MX                           7                            14
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 29(XP11.3) MUTATED                                 19
  DEL PEAK 29(XP11.3) WILD-TYPE                               39
                               vv
clus                            ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 29(XP11.3) MUTATED                                               0
  DEL PEAK 29(XP11.3) WILD-TYPE                                             1
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 29(XP11.3) MUTATED                                     1
  DEL PEAK 29(XP11.3) WILD-TYPE                                   7
                               vv
clus                            ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 29(XP11.3) MUTATED                                           1
  DEL PEAK 29(XP11.3) WILD-TYPE                                         0
D51V6, multiclass
                                               clus
vv                                              DEL PEAK 29(XP11.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                       19
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                           0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                     1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                               1
                                               clus
vv                                              DEL PEAK 29(XP11.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                         39
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                             1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                       7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                 0
D51V7, binary
                               cls
clus                             0  1
  DEL PEAK 29(XP11.3) MUTATED    7 14
  DEL PEAK 29(XP11.3) WILD-TYPE  7 40
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 29(XP11.3) MUTATED      7   14
  DEL PEAK 29(XP11.3) WILD-TYPE    7   40
     clus
vv    DEL PEAK 29(XP11.3) MUTATED DEL PEAK 29(XP11.3) WILD-TYPE
  NO                            7                             7
  YES                          14                            40
D51V8, continuous
D51V9, continuous

Clustering(52) Variable = DEL PEAK 30(XQ21.33) MUTATION ANALYSIS
D52V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 30(XQ21.33) MUTATED    8  7
  DEL PEAK 30(XQ21.33) WILD-TYPE 48  3
  DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE 
                            15                             51 
  DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE 
                             7                              3 
$`DEL PEAK 30(XQ21.33) MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DS-A0VK 
       11.44         5.46        67.46         2.43        40.93        36.76 
TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A44S TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-FU-A2QG 
       95.08         0.26         0.30        16.44         7.92         0.99 
TCGA-FU-A3HY TCGA-IR-A3LK TCGA-MY-A5BF 
        0.07        26.56         4.34 

$`DEL PEAK 30(XQ21.33) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41        36.56       177.04        53.13        35.61 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ 
       78.31        87.75        58.88         2.66        69.93         6.02 
TCGA-DS-A5RQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A439 
        6.84         1.74         1.32         0.82         0.62         0.66 
TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K 
        1.78         0.33         0.26         6.94         1.12         1.22 
TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        1.22         2.17         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ 
        0.79         3.48         1.35         1.02        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       20.78         8.02       147.35       124.27        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW 
       96.92        78.67        81.96        36.36         0.10         0.89 
TCGA-LP-A4AX TCGA-MY-A5BD TCGA-MY-A5BE 
        0.07        29.72         0.07 

  DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE 
                         95.08                         177.04 
  DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE 
                          7.92                           6.02 
[1] "0.1 - 95.1 (7.9)"  "0.1 - 177.0 (6.0)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 30(XQ21.33) MUTATED"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 30(XQ21.33) MUTATED"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A0TN                     TCGA-C5-A1BI 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-DS-A5RQ 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EA-A439 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A43B                     TCGA-EA-A44S 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-EA-A4BA                     TCGA-EA-A50E 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A1H6 
  "DEL PEAK 30(XQ21.33) MUTATED"   "DEL PEAK 30(XQ21.33) MUTATED" 
                    TCGA-EX-A3L1                     TCGA-EX-A449 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-FU-A3TQ 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3TX                     TCGA-FU-A3WB 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3YQ                     TCGA-FU-A40J 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A57G                     TCGA-HG-A2PA 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A3JJ                     TCGA-HM-A3JK 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A4S6                     TCGA-IR-A3L7 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LA                     TCGA-IR-A3LB 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LC                     TCGA-IR-A3LF 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LH                     TCGA-IR-A3LI 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-IR-A3LK                     TCGA-IR-A3LL 
  "DEL PEAK 30(XQ21.33) MUTATED" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-LP-A4AU                     TCGA-LP-A4AW 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-LP-A4AX                     TCGA-MY-A5BD 
"DEL PEAK 30(XQ21.33) WILD-TYPE" "DEL PEAK 30(XQ21.33) WILD-TYPE" 
                    TCGA-MY-A5BE                     TCGA-MY-A5BF 
"DEL PEAK 30(XQ21.33) WILD-TYPE"   "DEL PEAK 30(XQ21.33) MUTATED" 
[1] "hr=" "9.1"
D52V2, continuous
                                vv
clus                             T1 T2+T3+T4
  DEL PEAK 30(XQ21.33) MUTATED    9        3
  DEL PEAK 30(XQ21.33) WILD-TYPE 33       19
D52V3, multiclass
          clus
vv         DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE
  T1                                  9                             33
  T2+T3+T4                            3                             19
D52V4, binary
                                cls
clus                              0  1
  DEL PEAK 30(XQ21.33) MUTATED    7  5
  DEL PEAK 30(XQ21.33) WILD-TYPE 35 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(XQ21.33) MUTATED      7    5
  DEL PEAK 30(XQ21.33) WILD-TYPE   35   16
   clus
vv  DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE
  0                            7                             35
  1                            5                             16
                                vv
clus                             M0 M1 MX
  DEL PEAK 30(XQ21.33) MUTATED    6  0  5
  DEL PEAK 30(XQ21.33) WILD-TYPE 34  2 16
D52V5, multiclass
    clus
vv   DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE
  M0                            6                             34
  M1                            0                              2
  MX                            5                             16
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 30(XQ21.33) MUTATED                                 14
  DEL PEAK 30(XQ21.33) WILD-TYPE                               44
                                vv
clus                             ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  DEL PEAK 30(XQ21.33) MUTATED                                               0
  DEL PEAK 30(XQ21.33) WILD-TYPE                                             1
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 30(XQ21.33) MUTATED                                     1
  DEL PEAK 30(XQ21.33) WILD-TYPE                                   7
                                vv
clus                             ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  DEL PEAK 30(XQ21.33) MUTATED                                           0
  DEL PEAK 30(XQ21.33) WILD-TYPE                                         1
D52V6, multiclass
                                               clus
vv                                              DEL PEAK 30(XQ21.33) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                        14
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                            0
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                      1
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                0
                                               clus
vv                                              DEL PEAK 30(XQ21.33) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                          44
  ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE                              1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                                        7
  ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX                                  1
D52V7, binary
                                cls
clus                              0  1
  DEL PEAK 30(XQ21.33) MUTATED    6  9
  DEL PEAK 30(XQ21.33) WILD-TYPE  8 45
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(XQ21.33) MUTATED      6    9
  DEL PEAK 30(XQ21.33) WILD-TYPE    8   45
     clus
vv    DEL PEAK 30(XQ21.33) MUTATED DEL PEAK 30(XQ21.33) WILD-TYPE
  NO                             6                              8
  YES                            9                             45
D52V8, continuous
D52V9, continuous
> q(save="no")
