
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/476926/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/CESC-TP/4430814/CESC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=CESC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=CESC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=163, in cluster file=155, common to both=155
[1]  52 155
[1] "Amp Peak  1(1q21.3)"
[1] 3
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           81                            74 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           81                            74 
[1] "Amp Peak  2(2p24.3)"
[1] 3
      AMP PEAK  2(2P24.3) CNV AMP PEAK  2(2P24.3) WILD-TYPE 
                           40                           115 
      AMP PEAK  2(2P24.3) CNV AMP PEAK  2(2P24.3) WILD-TYPE 
                           40                           115 
[1] "Amp Peak  3(2q32.3)"
[1] 3
      AMP PEAK  3(2Q32.3) CNV AMP PEAK  3(2Q32.3) WILD-TYPE 
                           23                           132 
      AMP PEAK  3(2Q32.3) CNV AMP PEAK  3(2Q32.3) WILD-TYPE 
                           23                           132 
[1] "Amp Peak  4(3q26.2)"
[1] 3
      AMP PEAK  4(3Q26.2) CNV AMP PEAK  4(3Q26.2) WILD-TYPE 
                          119                            36 
      AMP PEAK  4(3Q26.2) CNV AMP PEAK  4(3Q26.2) WILD-TYPE 
                          119                            36 
[1] "Amp Peak  5(3q28)"
[1] 3
      AMP PEAK  5(3Q28) CNV AMP PEAK  5(3Q28) WILD-TYPE 
                        119                          36 
      AMP PEAK  5(3Q28) CNV AMP PEAK  5(3Q28) WILD-TYPE 
                        119                          36 
[1] "Amp Peak  6(4q12)"
[1] 3
      AMP PEAK  6(4Q12) CNV AMP PEAK  6(4Q12) WILD-TYPE 
                         13                         142 
      AMP PEAK  6(4Q12) CNV AMP PEAK  6(4Q12) WILD-TYPE 
                         13                         142 
[1] "Amp Peak  7(6p21.33)"
[1] 3
      AMP PEAK  7(6P21.33) CNV AMP PEAK  7(6P21.33) WILD-TYPE 
                            40                            115 
      AMP PEAK  7(6P21.33) CNV AMP PEAK  7(6P21.33) WILD-TYPE 
                            40                            115 
[1] "Amp Peak  8(8q24.21)"
[1] 3
      AMP PEAK  8(8Q24.21) CNV AMP PEAK  8(8Q24.21) WILD-TYPE 
                            64                             91 
      AMP PEAK  8(8Q24.21) CNV AMP PEAK  8(8Q24.21) WILD-TYPE 
                            64                             91 
[1] "Amp Peak  9(9p24.1)"
[1] 3
      AMP PEAK  9(9P24.1) CNV AMP PEAK  9(9P24.1) WILD-TYPE 
                           33                           122 
      AMP PEAK  9(9P24.1) CNV AMP PEAK  9(9P24.1) WILD-TYPE 
                           33                           122 
[1] "Amp Peak 10(9p24.1)"
[1] 3
      AMP PEAK 10(9P24.1) CNV AMP PEAK 10(9P24.1) WILD-TYPE 
                           35                           120 
      AMP PEAK 10(9P24.1) CNV AMP PEAK 10(9P24.1) WILD-TYPE 
                           35                           120 
[1] "Amp Peak 11(11p13)"
[1] 3
      AMP PEAK 11(11P13) CNV AMP PEAK 11(11P13) WILD-TYPE 
                          11                          144 
      AMP PEAK 11(11P13) CNV AMP PEAK 11(11P13) WILD-TYPE 
                          11                          144 
[1] "Amp Peak 12(11q13.3)"
[1] 3
      AMP PEAK 12(11Q13.3) CNV AMP PEAK 12(11Q13.3) WILD-TYPE 
                            20                            135 
      AMP PEAK 12(11Q13.3) CNV AMP PEAK 12(11Q13.3) WILD-TYPE 
                            20                            135 
[1] "Amp Peak 13(11q22.1)"
[1] 3
      AMP PEAK 13(11Q22.1) CNV AMP PEAK 13(11Q22.1) WILD-TYPE 
                            28                            127 
      AMP PEAK 13(11Q22.1) CNV AMP PEAK 13(11Q22.1) WILD-TYPE 
                            28                            127 
[1] "Amp Peak 14(13q22.1)"
[1] 3
      AMP PEAK 14(13Q22.1) CNV AMP PEAK 14(13Q22.1) WILD-TYPE 
                            35                            120 
      AMP PEAK 14(13Q22.1) CNV AMP PEAK 14(13Q22.1) WILD-TYPE 
                            35                            120 
[1] "Amp Peak 15(14q24.1)"
[1] 3
      AMP PEAK 15(14Q24.1) CNV AMP PEAK 15(14Q24.1) WILD-TYPE 
                            30                            125 
      AMP PEAK 15(14Q24.1) CNV AMP PEAK 15(14Q24.1) WILD-TYPE 
                            30                            125 
[1] "Amp Peak 16(15q26.1)"
[1] 3
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                            38                            117 
      AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE 
                            38                            117 
[1] "Amp Peak 17(16p13.13)"
[1] 3
      AMP PEAK 17(16P13.13) CNV AMP PEAK 17(16P13.13) WILD-TYPE 
                             35                             120 
      AMP PEAK 17(16P13.13) CNV AMP PEAK 17(16P13.13) WILD-TYPE 
                             35                             120 
[1] "Amp Peak 18(17q12)"
[1] 3
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                          27                          128 
      AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE 
                          27                          128 
[1] "Amp Peak 19(17q25.1)"
[1] 3
      AMP PEAK 19(17Q25.1) CNV AMP PEAK 19(17Q25.1) WILD-TYPE 
                            44                            111 
      AMP PEAK 19(17Q25.1) CNV AMP PEAK 19(17Q25.1) WILD-TYPE 
                            44                            111 
[1] "Amp Peak 20(19q13.32)"
[1] 3
      AMP PEAK 20(19Q13.32) CNV AMP PEAK 20(19Q13.32) WILD-TYPE 
                             50                             105 
      AMP PEAK 20(19Q13.32) CNV AMP PEAK 20(19Q13.32) WILD-TYPE 
                             50                             105 
[1] "Amp Peak 21(20q11.21)"
[1] 3
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                             69                              86 
      AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE 
                             69                              86 
[1] "Amp Peak 22(Xq28)"
[1] 3
      AMP PEAK 22(XQ28) CNV AMP PEAK 22(XQ28) WILD-TYPE 
                         43                         112 
      AMP PEAK 22(XQ28) CNV AMP PEAK 22(XQ28) WILD-TYPE 
                         43                         112 
[1] "Del Peak  1(1p36.23)"
[1] 3
      DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE 
                            21                            134 
      DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE 
                            21                            134 
[1] "Del Peak  2(2q22.1)"
[1] 3
      DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE 
                           29                           126 
      DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE 
                           29                           126 
[1] "Del Peak  3(2q37.1)"
[1] 3
      DEL PEAK  3(2Q37.1) CNV DEL PEAK  3(2Q37.1) WILD-TYPE 
                           62                            93 
      DEL PEAK  3(2Q37.1) CNV DEL PEAK  3(2Q37.1) WILD-TYPE 
                           62                            93 
[1] "Del Peak  4(3p22.1)"
[1] 3
      DEL PEAK  4(3P22.1) CNV DEL PEAK  4(3P22.1) WILD-TYPE 
                           54                           101 
      DEL PEAK  4(3P22.1) CNV DEL PEAK  4(3P22.1) WILD-TYPE 
                           54                           101 
[1] "Del Peak  5(3p14.2)"
[1] 3
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                           62                            93 
      DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE 
                           62                            93 
[1] "Del Peak  6(4q22.1)"
[1] 3
      DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE 
                           44                           111 
      DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE 
                           44                           111 
[1] "Del Peak  7(4q35.2)"
[1] 3
      DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE 
                           57                            98 
      DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE 
                           57                            98 
[1] "Del Peak  8(5q15)"
[1] 3
      DEL PEAK  8(5Q15) CNV DEL PEAK  8(5Q15) WILD-TYPE 
                         41                         114 
      DEL PEAK  8(5Q15) CNV DEL PEAK  8(5Q15) WILD-TYPE 
                         41                         114 
[1] "Del Peak  9(5q35.2)"
[1] 3
      DEL PEAK  9(5Q35.2) CNV DEL PEAK  9(5Q35.2) WILD-TYPE 
                           42                           113 
      DEL PEAK  9(5Q35.2) CNV DEL PEAK  9(5Q35.2) WILD-TYPE 
                           42                           113 
[1] "Del Peak 10(6p24.2)"
[1] 3
      DEL PEAK 10(6P24.2) CNV DEL PEAK 10(6P24.2) WILD-TYPE 
                           23                           132 
      DEL PEAK 10(6P24.2) CNV DEL PEAK 10(6P24.2) WILD-TYPE 
                           23                           132 
[1] "Del Peak 11(6q26)"
[1] 3
      DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE 
                         55                         100 
      DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE 
                         55                         100 
[1] "Del Peak 12(7q34)"
[1] 3
      DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE 
                         34                         121 
      DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE 
                         34                         121 
[1] "Del Peak 13(10q23.31)"
[1] 3
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                             43                             112 
      DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE 
                             43                             112 
[1] "Del Peak 14(11p15.5)"
[1] 3
      DEL PEAK 14(11P15.5) CNV DEL PEAK 14(11P15.5) WILD-TYPE 
                            49                            106 
      DEL PEAK 14(11P15.5) CNV DEL PEAK 14(11P15.5) WILD-TYPE 
                            49                            106 
[1] "Del Peak 15(11q25)"
[1] 3
      DEL PEAK 15(11Q25) CNV DEL PEAK 15(11Q25) WILD-TYPE 
                          88                           67 
      DEL PEAK 15(11Q25) CNV DEL PEAK 15(11Q25) WILD-TYPE 
                          88                           67 
[1] "Del Peak 16(13q12.12)"
[1] 3
      DEL PEAK 16(13Q12.12) CNV DEL PEAK 16(13Q12.12) WILD-TYPE 
                             53                             102 
      DEL PEAK 16(13Q12.12) CNV DEL PEAK 16(13Q12.12) WILD-TYPE 
                             53                             102 
[1] "Del Peak 17(13q14.2)"
[1] 3
      DEL PEAK 17(13Q14.2) CNV DEL PEAK 17(13Q14.2) WILD-TYPE 
                            57                             98 
      DEL PEAK 17(13Q14.2) CNV DEL PEAK 17(13Q14.2) WILD-TYPE 
                            57                             98 
[1] "Del Peak 18(14q32.31)"
[1] 3
      DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE 
                             28                             127 
      DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE 
                             28                             127 
[1] "Del Peak 19(15q15.1)"
[1] 3
      DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE 
                            34                            121 
      DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE 
                            34                            121 
[1] "Del Peak 20(16q11.2)"
[1] 3
      DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE 
                            28                            127 
      DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE 
                            28                            127 
[1] "Del Peak 21(16q23.1)"
[1] 3
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                            31                            124 
      DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE 
                            31                            124 
[1] "Del Peak 22(17p12)"
[1] 3
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                          47                          108 
      DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE 
                          47                          108 
[1] "Del Peak 23(17q25.3)"
[1] 3
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                            27                            128 
      DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE 
                            27                            128 
[1] "Del Peak 24(19p13.3)"
[1] 3
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                            47                            108 
      DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE 
                            47                            108 
[1] "Del Peak 25(19q13.33)"
[1] 3
      DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE 
                             21                             134 
      DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE 
                             21                             134 
[1] "Del Peak 26(20p12.1)"
[1] 3
      DEL PEAK 26(20P12.1) CNV DEL PEAK 26(20P12.1) WILD-TYPE 
                            21                            134 
      DEL PEAK 26(20P12.1) CNV DEL PEAK 26(20P12.1) WILD-TYPE 
                            21                            134 
[1] "Del Peak 27(21q21.1)"
[1] 3
      DEL PEAK 27(21Q21.1) CNV DEL PEAK 27(21Q21.1) WILD-TYPE 
                            30                            125 
      DEL PEAK 27(21Q21.1) CNV DEL PEAK 27(21Q21.1) WILD-TYPE 
                            30                            125 
[1] "Del Peak 28(22q13.32)"
[1] 3
      DEL PEAK 28(22Q13.32) CNV DEL PEAK 28(22Q13.32) WILD-TYPE 
                             44                             111 
      DEL PEAK 28(22Q13.32) CNV DEL PEAK 28(22Q13.32) WILD-TYPE 
                             44                             111 
[1] "Del Peak 29(Xp11.3)"
[1] 3
      DEL PEAK 29(XP11.3) CNV DEL PEAK 29(XP11.3) WILD-TYPE 
                           43                           112 
      DEL PEAK 29(XP11.3) CNV DEL PEAK 29(XP11.3) WILD-TYPE 
                           43                           112 
[1] "Del Peak 30(Xq21.33)"
[1] 3
      DEL PEAK 30(XQ21.33) CNV DEL PEAK 30(XQ21.33) WILD-TYPE 
                            35                            120 
      DEL PEAK 30(XQ21.33) CNV DEL PEAK 30(XQ21.33) WILD-TYPE 
                            35                            120 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 155 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 155 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q21.3)
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                      36                            18
  CLUS_2                      22                            21
  CLUS_3                      23                            35
D1V2, multiclass
D1V3, multiclass
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                      21                            26
  CLUS_2                      39                            34
  CLUS_3                      13                             7
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                      18                            15
  CLUS_2                      19                            24
  CLUS_3                       9                             4
  CLUS_4                      21                            16
D1V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) CNV         44   23
  AMP PEAK  1(1Q21.3) WILD-TYPE   44   15
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                      44                            44
  CLUS_2                      23                            15
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                      28                            22
  CLUS_2                      18                            16
  CLUS_3                      21                            21
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                      25                            22
  CLUS_2                      17                            24
  CLUS_3                      25                            13

Clustering(2) Variable = Amp Peak  2(2p24.3)
D2V1, multiclass
        clus
vv       AMP PEAK  2(2P24.3) CNV AMP PEAK  2(2P24.3) WILD-TYPE
  CLUS_1                      20                            34
  CLUS_2                      13                            30
  CLUS_3                       7                            51
D2V2, multiclass
D2V3, multiclass
D2V4, multiclass
        clus
vv       AMP PEAK  2(2P24.3) CNV AMP PEAK  2(2P24.3) WILD-TYPE
  CLUS_1                      17                            30
  CLUS_2                      15                            58
  CLUS_3                       5                            15
D2V5, multiclass
        clus
vv       AMP PEAK  2(2P24.3) CNV AMP PEAK  2(2P24.3) WILD-TYPE
  CLUS_1                       7                            26
  CLUS_2                      11                            32
  CLUS_3                       2                            11
  CLUS_4                      13                            24
D2V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(2P24.3) CNV         19   14
  AMP PEAK  2(2P24.3) WILD-TYPE   69   24
        clus
vv       AMP PEAK  2(2P24.3) CNV AMP PEAK  2(2P24.3) WILD-TYPE
  CLUS_1                      19                            69
  CLUS_2                      14                            24
D2V7, multiclass
        clus
vv       AMP PEAK  2(2P24.3) CNV AMP PEAK  2(2P24.3) WILD-TYPE
  CLUS_1                      12                            38
  CLUS_2                       7                            27
  CLUS_3                      14                            28
D2V8, multiclass
        clus
vv       AMP PEAK  2(2P24.3) CNV AMP PEAK  2(2P24.3) WILD-TYPE
  CLUS_1                       5                            42
  CLUS_2                      14                            27
  CLUS_3                      14                            24

Clustering(3) Variable = Amp Peak  3(2q32.3)
D3V1, multiclass
        clus
vv       AMP PEAK  3(2Q32.3) CNV AMP PEAK  3(2Q32.3) WILD-TYPE
  CLUS_1                      11                            43
  CLUS_2                      11                            32
  CLUS_3                       1                            57
D3V2, multiclass
D3V3, multiclass
D3V4, multiclass
        clus
vv       AMP PEAK  3(2Q32.3) CNV AMP PEAK  3(2Q32.3) WILD-TYPE
  CLUS_1                      10                            37
  CLUS_2                       4                            69
  CLUS_3                       5                            15
D3V5, multiclass
        clus
vv       AMP PEAK  3(2Q32.3) CNV AMP PEAK  3(2Q32.3) WILD-TYPE
  CLUS_1                       3                            30
  CLUS_2                       9                            34
  CLUS_3                       1                            12
  CLUS_4                       7                            30
D3V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(2Q32.3) CNV         14    6
  AMP PEAK  3(2Q32.3) WILD-TYPE   74   32
        clus
vv       AMP PEAK  3(2Q32.3) CNV AMP PEAK  3(2Q32.3) WILD-TYPE
  CLUS_1                      14                            74
  CLUS_2                       6                            32
D3V7, multiclass
        clus
vv       AMP PEAK  3(2Q32.3) CNV AMP PEAK  3(2Q32.3) WILD-TYPE
  CLUS_1                       9                            41
  CLUS_2                       2                            32
  CLUS_3                       9                            33
D3V8, multiclass
        clus
vv       AMP PEAK  3(2Q32.3) CNV AMP PEAK  3(2Q32.3) WILD-TYPE
  CLUS_1                       4                            43
  CLUS_2                       9                            32
  CLUS_3                       7                            31

Clustering(4) Variable = Amp Peak  4(3q26.2)
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) CNV AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                      54                             0
  CLUS_2                      26                            17
  CLUS_3                      39                            19
D4V2, multiclass
D4V3, multiclass
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) CNV AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                      31                            16
  CLUS_2                      58                            15
  CLUS_3                      20                             0
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) CNV AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                      30                             3
  CLUS_2                      29                            14
  CLUS_3                      12                             1
  CLUS_4                      24                            13
D4V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3Q26.2) CNV         69   26
  AMP PEAK  4(3Q26.2) WILD-TYPE   19   12
        clus
vv       AMP PEAK  4(3Q26.2) CNV AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                      69                            19
  CLUS_2                      26                            12
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) CNV AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                      38                            12
  CLUS_2                      30                             4
  CLUS_3                      27                            15
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) CNV AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                      42                             5
  CLUS_2                      25                            16
  CLUS_3                      28                            10

Clustering(5) Variable = Amp Peak  5(3q28)
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q28) CNV AMP PEAK  5(3Q28) WILD-TYPE
  CLUS_1                    54                           0
  CLUS_2                    25                          18
  CLUS_3                    40                          18
D5V2, multiclass
D5V3, multiclass
D5V4, multiclass
        clus
vv       AMP PEAK  5(3Q28) CNV AMP PEAK  5(3Q28) WILD-TYPE
  CLUS_1                    31                          16
  CLUS_2                    58                          15
  CLUS_3                    20                           0
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q28) CNV AMP PEAK  5(3Q28) WILD-TYPE
  CLUS_1                    30                           3
  CLUS_2                    28                          15
  CLUS_3                    12                           1
  CLUS_4                    24                          13
D5V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  5(3Q28) CNV         68   26
  AMP PEAK  5(3Q28) WILD-TYPE   20   12
        clus
vv       AMP PEAK  5(3Q28) CNV AMP PEAK  5(3Q28) WILD-TYPE
  CLUS_1                    68                          20
  CLUS_2                    26                          12
D5V7, multiclass
        clus
vv       AMP PEAK  5(3Q28) CNV AMP PEAK  5(3Q28) WILD-TYPE
  CLUS_1                    38                          12
  CLUS_2                    30                           4
  CLUS_3                    26                          16
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q28) CNV AMP PEAK  5(3Q28) WILD-TYPE
  CLUS_1                    42                           5
  CLUS_2                    24                          17
  CLUS_3                    28                          10

Clustering(6) Variable = Amp Peak  6(4q12)
D6V1, multiclass
        clus
vv       AMP PEAK  6(4Q12) CNV AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                     5                          49
  CLUS_2                     4                          39
  CLUS_3                     4                          54
D6V2, multiclass
D6V3, multiclass
D6V4, multiclass
        clus
vv       AMP PEAK  6(4Q12) CNV AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                     7                          40
  CLUS_2                     2                          71
  CLUS_3                     4                          16
D6V5, multiclass
        clus
vv       AMP PEAK  6(4Q12) CNV AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                     2                          31
  CLUS_2                     3                          40
  CLUS_3                     1                          12
  CLUS_4                     6                          31
D6V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  6(4Q12) CNV          5    7
  AMP PEAK  6(4Q12) WILD-TYPE   83   31
        clus
vv       AMP PEAK  6(4Q12) CNV AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                     5                          83
  CLUS_2                     7                          31
D6V7, multiclass
        clus
vv       AMP PEAK  6(4Q12) CNV AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                     3                          47
  CLUS_2                     3                          31
  CLUS_3                     6                          36
D6V8, multiclass
        clus
vv       AMP PEAK  6(4Q12) CNV AMP PEAK  6(4Q12) WILD-TYPE
  CLUS_1                     2                          45
  CLUS_2                     3                          38
  CLUS_3                     7                          31

Clustering(7) Variable = Amp Peak  7(6p21.33)
D7V1, multiclass
        clus
vv       AMP PEAK  7(6P21.33) CNV AMP PEAK  7(6P21.33) WILD-TYPE
  CLUS_1                       15                             39
  CLUS_2                       16                             27
  CLUS_3                        9                             49
D7V2, multiclass
D7V3, multiclass
D7V4, multiclass
        clus
vv       AMP PEAK  7(6P21.33) CNV AMP PEAK  7(6P21.33) WILD-TYPE
  CLUS_1                       18                             29
  CLUS_2                       12                             61
  CLUS_3                        5                             15
D7V5, multiclass
        clus
vv       AMP PEAK  7(6P21.33) CNV AMP PEAK  7(6P21.33) WILD-TYPE
  CLUS_1                        6                             27
  CLUS_2                       11                             32
  CLUS_3                        5                              8
  CLUS_4                       13                             24
D7V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  7(6P21.33) CNV         22   13
  AMP PEAK  7(6P21.33) WILD-TYPE   66   25
        clus
vv       AMP PEAK  7(6P21.33) CNV AMP PEAK  7(6P21.33) WILD-TYPE
  CLUS_1                       22                             66
  CLUS_2                       13                             25
D7V7, multiclass
        clus
vv       AMP PEAK  7(6P21.33) CNV AMP PEAK  7(6P21.33) WILD-TYPE
  CLUS_1                       14                             36
  CLUS_2                        6                             28
  CLUS_3                       15                             27
D7V8, multiclass
        clus
vv       AMP PEAK  7(6P21.33) CNV AMP PEAK  7(6P21.33) WILD-TYPE
  CLUS_1                        8                             39
  CLUS_2                       12                             29
  CLUS_3                       15                             23

Clustering(8) Variable = Amp Peak  8(8q24.21)
D8V1, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) CNV AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                       18                             36
  CLUS_2                       23                             20
  CLUS_3                       23                             35
D8V2, multiclass
D8V3, multiclass
D8V4, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) CNV AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                       20                             27
  CLUS_2                       33                             40
  CLUS_3                        7                             13
D8V5, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) CNV AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                       14                             19
  CLUS_2                       19                             24
  CLUS_3                        3                             10
  CLUS_4                       17                             20
D8V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(8Q24.21) CNV         36   17
  AMP PEAK  8(8Q24.21) WILD-TYPE   52   21
        clus
vv       AMP PEAK  8(8Q24.21) CNV AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                       36                             52
  CLUS_2                       17                             21
D8V7, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) CNV AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                       25                             25
  CLUS_2                       10                             24
  CLUS_3                       18                             24
D8V8, multiclass
        clus
vv       AMP PEAK  8(8Q24.21) CNV AMP PEAK  8(8Q24.21) WILD-TYPE
  CLUS_1                       17                             30
  CLUS_2                       18                             23
  CLUS_3                       18                             20

Clustering(9) Variable = Amp Peak  9(9p24.1)
D9V1, multiclass
        clus
vv       AMP PEAK  9(9P24.1) CNV AMP PEAK  9(9P24.1) WILD-TYPE
  CLUS_1                      11                            43
  CLUS_2                      13                            30
  CLUS_3                       9                            49
D9V2, multiclass
D9V3, multiclass
D9V4, multiclass
        clus
vv       AMP PEAK  9(9P24.1) CNV AMP PEAK  9(9P24.1) WILD-TYPE
  CLUS_1                      11                            36
  CLUS_2                      12                            61
  CLUS_3                       7                            13
D9V5, multiclass
        clus
vv       AMP PEAK  9(9P24.1) CNV AMP PEAK  9(9P24.1) WILD-TYPE
  CLUS_1                       5                            28
  CLUS_2                      12                            31
  CLUS_3                       3                            10
  CLUS_4                       6                            31
D9V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(9P24.1) CNV         20    6
  AMP PEAK  9(9P24.1) WILD-TYPE   68   32
        clus
vv       AMP PEAK  9(9P24.1) CNV AMP PEAK  9(9P24.1) WILD-TYPE
  CLUS_1                      20                            68
  CLUS_2                       6                            32
D9V7, multiclass
        clus
vv       AMP PEAK  9(9P24.1) CNV AMP PEAK  9(9P24.1) WILD-TYPE
  CLUS_1                      12                            38
  CLUS_2                       3                            31
  CLUS_3                      11                            31
D9V8, multiclass
        clus
vv       AMP PEAK  9(9P24.1) CNV AMP PEAK  9(9P24.1) WILD-TYPE
  CLUS_1                       7                            40
  CLUS_2                      11                            30
  CLUS_3                       8                            30

Clustering(10) Variable = Amp Peak 10(9p24.1)
D10V1, multiclass
        clus
vv       AMP PEAK 10(9P24.1) CNV AMP PEAK 10(9P24.1) WILD-TYPE
  CLUS_1                      12                            42
  CLUS_2                      13                            30
  CLUS_3                      10                            48
D10V2, multiclass
D10V3, multiclass
D10V4, multiclass
        clus
vv       AMP PEAK 10(9P24.1) CNV AMP PEAK 10(9P24.1) WILD-TYPE
  CLUS_1                      11                            36
  CLUS_2                      13                            60
  CLUS_3                       8                            12
D10V5, multiclass
        clus
vv       AMP PEAK 10(9P24.1) CNV AMP PEAK 10(9P24.1) WILD-TYPE
  CLUS_1                       6                            27
  CLUS_2                      12                            31
  CLUS_3                       4                             9
  CLUS_4                       6                            31
D10V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(9P24.1) CNV         22    6
  AMP PEAK 10(9P24.1) WILD-TYPE   66   32
        clus
vv       AMP PEAK 10(9P24.1) CNV AMP PEAK 10(9P24.1) WILD-TYPE
  CLUS_1                      22                            66
  CLUS_2                       6                            32
D10V7, multiclass
        clus
vv       AMP PEAK 10(9P24.1) CNV AMP PEAK 10(9P24.1) WILD-TYPE
  CLUS_1                      13                            37
  CLUS_2                       4                            30
  CLUS_3                      11                            31
D10V8, multiclass
        clus
vv       AMP PEAK 10(9P24.1) CNV AMP PEAK 10(9P24.1) WILD-TYPE
  CLUS_1                       9                            38
  CLUS_2                      11                            30
  CLUS_3                       8                            30

Clustering(11) Variable = Amp Peak 11(11p13)
D11V1, multiclass
        clus
vv       AMP PEAK 11(11P13) CNV AMP PEAK 11(11P13) WILD-TYPE
  CLUS_1                      2                           52
  CLUS_2                      6                           37
  CLUS_3                      3                           55
D11V2, multiclass
D11V3, multiclass
D11V4, multiclass
        clus
vv       AMP PEAK 11(11P13) CNV AMP PEAK 11(11P13) WILD-TYPE
  CLUS_1                      5                           42
  CLUS_2                      5                           68
  CLUS_3                      1                           19
D11V5, multiclass
        clus
vv       AMP PEAK 11(11P13) CNV AMP PEAK 11(11P13) WILD-TYPE
  CLUS_1                      2                           31
  CLUS_2                      4                           39
  CLUS_3                      0                           13
  CLUS_4                      3                           34
D11V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 11(11P13) CNV          6    3
  AMP PEAK 11(11P13) WILD-TYPE   82   35
        clus
vv       AMP PEAK 11(11P13) CNV AMP PEAK 11(11P13) WILD-TYPE
  CLUS_1                      6                           82
  CLUS_2                      3                           35
D11V7, multiclass
        clus
vv       AMP PEAK 11(11P13) CNV AMP PEAK 11(11P13) WILD-TYPE
  CLUS_1                      4                           46
  CLUS_2                      1                           33
  CLUS_3                      4                           38
D11V8, multiclass
        clus
vv       AMP PEAK 11(11P13) CNV AMP PEAK 11(11P13) WILD-TYPE
  CLUS_1                      2                           45
  CLUS_2                      4                           37
  CLUS_3                      3                           35

Clustering(12) Variable = Amp Peak 12(11q13.3)
D12V1, multiclass
        clus
vv       AMP PEAK 12(11Q13.3) CNV AMP PEAK 12(11Q13.3) WILD-TYPE
  CLUS_1                        5                             49
  CLUS_2                       11                             32
  CLUS_3                        4                             54
D12V2, multiclass
D12V3, multiclass
D12V4, multiclass
        clus
vv       AMP PEAK 12(11Q13.3) CNV AMP PEAK 12(11Q13.3) WILD-TYPE
  CLUS_1                       10                             37
  CLUS_2                        6                             67
  CLUS_3                        2                             18
D12V5, multiclass
        clus
vv       AMP PEAK 12(11Q13.3) CNV AMP PEAK 12(11Q13.3) WILD-TYPE
  CLUS_1                        3                             30
  CLUS_2                        8                             35
  CLUS_3                        1                             12
  CLUS_4                        6                             31
D12V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(11Q13.3) CNV         12    6
  AMP PEAK 12(11Q13.3) WILD-TYPE   76   32
        clus
vv       AMP PEAK 12(11Q13.3) CNV AMP PEAK 12(11Q13.3) WILD-TYPE
  CLUS_1                       12                             76
  CLUS_2                        6                             32
D12V7, multiclass
        clus
vv       AMP PEAK 12(11Q13.3) CNV AMP PEAK 12(11Q13.3) WILD-TYPE
  CLUS_1                       10                             40
  CLUS_2                        2                             32
  CLUS_3                        6                             36
D12V8, multiclass
        clus
vv       AMP PEAK 12(11Q13.3) CNV AMP PEAK 12(11Q13.3) WILD-TYPE
  CLUS_1                        4                             43
  CLUS_2                        8                             33
  CLUS_3                        6                             32

Clustering(13) Variable = Amp Peak 13(11q22.1)
D13V1, multiclass
        clus
vv       AMP PEAK 13(11Q22.1) CNV AMP PEAK 13(11Q22.1) WILD-TYPE
  CLUS_1                        5                             49
  CLUS_2                       19                             24
  CLUS_3                        4                             54
D13V2, multiclass
D13V3, multiclass
D13V4, multiclass
        clus
vv       AMP PEAK 13(11Q22.1) CNV AMP PEAK 13(11Q22.1) WILD-TYPE
  CLUS_1                        8                             39
  CLUS_2                       13                             60
  CLUS_3                        2                             18
D13V5, multiclass
        clus
vv       AMP PEAK 13(11Q22.1) CNV AMP PEAK 13(11Q22.1) WILD-TYPE
  CLUS_1                        6                             27
  CLUS_2                       15                             28
  CLUS_3                        1                             12
  CLUS_4                        5                             32
D13V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q22.1) CNV         23    4
  AMP PEAK 13(11Q22.1) WILD-TYPE   65   34
        clus
vv       AMP PEAK 13(11Q22.1) CNV AMP PEAK 13(11Q22.1) WILD-TYPE
  CLUS_1                       23                             65
  CLUS_2                        4                             34
D13V7, multiclass
        clus
vv       AMP PEAK 13(11Q22.1) CNV AMP PEAK 13(11Q22.1) WILD-TYPE
  CLUS_1                       16                             34
  CLUS_2                        5                             29
  CLUS_3                        6                             36
D13V8, multiclass
        clus
vv       AMP PEAK 13(11Q22.1) CNV AMP PEAK 13(11Q22.1) WILD-TYPE
  CLUS_1                       11                             36
  CLUS_2                       12                             29
  CLUS_3                        4                             34

Clustering(14) Variable = Amp Peak 14(13q22.1)
D14V1, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) CNV AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                        9                             45
  CLUS_2                       14                             29
  CLUS_3                       12                             46
D14V2, multiclass
D14V3, multiclass
D14V4, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) CNV AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                       11                             36
  CLUS_2                       18                             55
  CLUS_3                        3                             17
D14V5, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) CNV AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                        3                             30
  CLUS_2                       13                             30
  CLUS_3                        3                             10
  CLUS_4                        8                             29
D14V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q22.1) CNV         18    9
  AMP PEAK 14(13Q22.1) WILD-TYPE   70   29
        clus
vv       AMP PEAK 14(13Q22.1) CNV AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                       18                             70
  CLUS_2                        9                             29
D14V7, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) CNV AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                       12                             38
  CLUS_2                        6                             28
  CLUS_3                        9                             33
D14V8, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) CNV AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                        5                             42
  CLUS_2                       12                             29
  CLUS_3                       10                             28

Clustering(15) Variable = Amp Peak 15(14q24.1)
D15V1, multiclass
        clus
vv       AMP PEAK 15(14Q24.1) CNV AMP PEAK 15(14Q24.1) WILD-TYPE
  CLUS_1                       12                             42
  CLUS_2                       12                             31
  CLUS_3                        6                             52
D15V2, multiclass
D15V3, multiclass
D15V4, multiclass
        clus
vv       AMP PEAK 15(14Q24.1) CNV AMP PEAK 15(14Q24.1) WILD-TYPE
  CLUS_1                       14                             33
  CLUS_2                       11                             62
  CLUS_3                        3                             17
D15V5, multiclass
        clus
vv       AMP PEAK 15(14Q24.1) CNV AMP PEAK 15(14Q24.1) WILD-TYPE
  CLUS_1                        5                             28
  CLUS_2                       11                             32
  CLUS_3                        2                             11
  CLUS_4                        7                             30
D15V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(14Q24.1) CNV         18    7
  AMP PEAK 15(14Q24.1) WILD-TYPE   70   31
        clus
vv       AMP PEAK 15(14Q24.1) CNV AMP PEAK 15(14Q24.1) WILD-TYPE
  CLUS_1                       18                             70
  CLUS_2                        7                             31
D15V7, multiclass
        clus
vv       AMP PEAK 15(14Q24.1) CNV AMP PEAK 15(14Q24.1) WILD-TYPE
  CLUS_1                       11                             39
  CLUS_2                        6                             28
  CLUS_3                        8                             34
D15V8, multiclass
        clus
vv       AMP PEAK 15(14Q24.1) CNV AMP PEAK 15(14Q24.1) WILD-TYPE
  CLUS_1                        8                             39
  CLUS_2                       10                             31
  CLUS_3                        7                             31

Clustering(16) Variable = Amp Peak 16(15q26.1)
D16V1, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                       17                             37
  CLUS_2                        9                             34
  CLUS_3                       12                             46
D16V2, multiclass
D16V3, multiclass
D16V4, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                       13                             34
  CLUS_2                       16                             57
  CLUS_3                        5                             15
D16V5, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                       10                             23
  CLUS_2                        6                             37
  CLUS_3                        4                              9
  CLUS_4                        8                             29
D16V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.1) CNV         20    8
  AMP PEAK 16(15Q26.1) WILD-TYPE   68   30
        clus
vv       AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                       20                             68
  CLUS_2                        8                             30
D16V7, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                       10                             40
  CLUS_2                        7                             27
  CLUS_3                       11                             31
D16V8, multiclass
        clus
vv       AMP PEAK 16(15Q26.1) CNV AMP PEAK 16(15Q26.1) WILD-TYPE
  CLUS_1                       12                             35
  CLUS_2                        6                             35
  CLUS_3                       10                             28

Clustering(17) Variable = Amp Peak 17(16p13.13)
D17V1, multiclass
        clus
vv       AMP PEAK 17(16P13.13) CNV AMP PEAK 17(16P13.13) WILD-TYPE
  CLUS_1                        18                              36
  CLUS_2                         5                              38
  CLUS_3                        12                              46
D17V2, multiclass
D17V3, multiclass
D17V4, multiclass
        clus
vv       AMP PEAK 17(16P13.13) CNV AMP PEAK 17(16P13.13) WILD-TYPE
  CLUS_1                        11                              36
  CLUS_2                        13                              60
  CLUS_3                         6                              14
D17V5, multiclass
        clus
vv       AMP PEAK 17(16P13.13) CNV AMP PEAK 17(16P13.13) WILD-TYPE
  CLUS_1                         7                              26
  CLUS_2                        10                              33
  CLUS_3                         4                               9
  CLUS_4                         9                              28
D17V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(16P13.13) CNV         18   12
  AMP PEAK 17(16P13.13) WILD-TYPE   70   26
        clus
vv       AMP PEAK 17(16P13.13) CNV AMP PEAK 17(16P13.13) WILD-TYPE
  CLUS_1                        18                              70
  CLUS_2                        12                              26
D17V7, multiclass
        clus
vv       AMP PEAK 17(16P13.13) CNV AMP PEAK 17(16P13.13) WILD-TYPE
  CLUS_1                        11                              39
  CLUS_2                         9                              25
  CLUS_3                        10                              32
D17V8, multiclass
        clus
vv       AMP PEAK 17(16P13.13) CNV AMP PEAK 17(16P13.13) WILD-TYPE
  CLUS_1                        10                              37
  CLUS_2                         8                              33
  CLUS_3                        12                              26

Clustering(18) Variable = Amp Peak 18(17q12)
D18V1, multiclass
        clus
vv       AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                     14                           40
  CLUS_2                      8                           35
  CLUS_3                      5                           53
D18V2, multiclass
D18V3, multiclass
D18V4, multiclass
        clus
vv       AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                     10                           37
  CLUS_2                      9                           64
  CLUS_3                      4                           16
D18V5, multiclass
        clus
vv       AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                      4                           29
  CLUS_2                      5                           38
  CLUS_3                      3                           10
  CLUS_4                      9                           28
D18V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) CNV         10   11
  AMP PEAK 18(17Q12) WILD-TYPE   78   27
        clus
vv       AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                     10                           78
  CLUS_2                     11                           27
D18V7, multiclass
        clus
vv       AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                      6                           44
  CLUS_2                      4                           30
  CLUS_3                     11                           31
D18V8, multiclass
        clus
vv       AMP PEAK 18(17Q12) CNV AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                      4                           43
  CLUS_2                      5                           36
  CLUS_3                     12                           26

Clustering(19) Variable = Amp Peak 19(17q25.1)
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q25.1) CNV AMP PEAK 19(17Q25.1) WILD-TYPE
  CLUS_1                       25                             29
  CLUS_2                       14                             29
  CLUS_3                        5                             53
D19V2, multiclass
D19V3, multiclass
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q25.1) CNV AMP PEAK 19(17Q25.1) WILD-TYPE
  CLUS_1                       13                             34
  CLUS_2                       17                             56
  CLUS_3                        9                             11
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q25.1) CNV AMP PEAK 19(17Q25.1) WILD-TYPE
  CLUS_1                       11                             22
  CLUS_2                        9                             34
  CLUS_3                        3                             10
  CLUS_4                       11                             26
D19V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q25.1) CNV         21   13
  AMP PEAK 19(17Q25.1) WILD-TYPE   67   25
        clus
vv       AMP PEAK 19(17Q25.1) CNV AMP PEAK 19(17Q25.1) WILD-TYPE
  CLUS_1                       21                             67
  CLUS_2                       13                             25
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q25.1) CNV AMP PEAK 19(17Q25.1) WILD-TYPE
  CLUS_1                        9                             41
  CLUS_2                       11                             23
  CLUS_3                       14                             28
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q25.1) CNV AMP PEAK 19(17Q25.1) WILD-TYPE
  CLUS_1                       13                             34
  CLUS_2                        7                             34
  CLUS_3                       14                             24

Clustering(20) Variable = Amp Peak 20(19q13.32)
D20V1, multiclass
        clus
vv       AMP PEAK 20(19Q13.32) CNV AMP PEAK 20(19Q13.32) WILD-TYPE
  CLUS_1                        18                              36
  CLUS_2                        22                              21
  CLUS_3                        10                              48
D20V2, multiclass
D20V3, multiclass
D20V4, multiclass
        clus
vv       AMP PEAK 20(19Q13.32) CNV AMP PEAK 20(19Q13.32) WILD-TYPE
  CLUS_1                        19                              28
  CLUS_2                        20                              53
  CLUS_3                         7                              13
D20V5, multiclass
        clus
vv       AMP PEAK 20(19Q13.32) CNV AMP PEAK 20(19Q13.32) WILD-TYPE
  CLUS_1                        11                              22
  CLUS_2                        13                              30
  CLUS_3                         3                              10
  CLUS_4                        15                              22
D20V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 20(19Q13.32) CNV         28   14
  AMP PEAK 20(19Q13.32) WILD-TYPE   60   24
        clus
vv       AMP PEAK 20(19Q13.32) CNV AMP PEAK 20(19Q13.32) WILD-TYPE
  CLUS_1                        28                              60
  CLUS_2                        14                              24
D20V7, multiclass
        clus
vv       AMP PEAK 20(19Q13.32) CNV AMP PEAK 20(19Q13.32) WILD-TYPE
  CLUS_1                        17                              33
  CLUS_2                         9                              25
  CLUS_3                        16                              26
D20V8, multiclass
        clus
vv       AMP PEAK 20(19Q13.32) CNV AMP PEAK 20(19Q13.32) WILD-TYPE
  CLUS_1                        15                              32
  CLUS_2                        13                              28
  CLUS_3                        14                              24

Clustering(21) Variable = Amp Peak 21(20q11.21)
D21V1, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                        34                              20
  CLUS_2                        21                              22
  CLUS_3                        14                              44
D21V2, multiclass
D21V3, multiclass
D21V4, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                        24                              23
  CLUS_2                        26                              47
  CLUS_3                        12                               8
D21V5, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                        20                              13
  CLUS_2                        18                              25
  CLUS_3                         6                               7
  CLUS_4                        17                              20
D21V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) CNV         41   20
  AMP PEAK 21(20Q11.21) WILD-TYPE   47   18
        clus
vv       AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                        41                              47
  CLUS_2                        20                              18
D21V7, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                        24                              26
  CLUS_2                        17                              17
  CLUS_3                        20                              22
D21V8, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) CNV AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                        22                              25
  CLUS_2                        18                              23
  CLUS_3                        21                              17

Clustering(22) Variable = Amp Peak 22(Xq28)
D22V1, multiclass
        clus
vv       AMP PEAK 22(XQ28) CNV AMP PEAK 22(XQ28) WILD-TYPE
  CLUS_1                    17                          37
  CLUS_2                    15                          28
  CLUS_3                    11                          47
D22V2, multiclass
D22V3, multiclass
D22V4, multiclass
        clus
vv       AMP PEAK 22(XQ28) CNV AMP PEAK 22(XQ28) WILD-TYPE
  CLUS_1                    14                          33
  CLUS_2                    19                          54
  CLUS_3                     8                          12
D22V5, multiclass
        clus
vv       AMP PEAK 22(XQ28) CNV AMP PEAK 22(XQ28) WILD-TYPE
  CLUS_1                     8                          25
  CLUS_2                    19                          24
  CLUS_3                     1                          12
  CLUS_4                     8                          29
D22V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 22(XQ28) CNV         27    9
  AMP PEAK 22(XQ28) WILD-TYPE   61   29
        clus
vv       AMP PEAK 22(XQ28) CNV AMP PEAK 22(XQ28) WILD-TYPE
  CLUS_1                    27                          61
  CLUS_2                     9                          29
D22V7, multiclass
        clus
vv       AMP PEAK 22(XQ28) CNV AMP PEAK 22(XQ28) WILD-TYPE
  CLUS_1                    21                          29
  CLUS_2                     5                          29
  CLUS_3                    10                          32
D22V8, multiclass
        clus
vv       AMP PEAK 22(XQ28) CNV AMP PEAK 22(XQ28) WILD-TYPE
  CLUS_1                    12                          35
  CLUS_2                    15                          26
  CLUS_3                     9                          29

Clustering(23) Variable = Del Peak  1(1p36.23)
D23V1, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                        7                             47
  CLUS_2                        9                             34
  CLUS_3                        5                             53
D23V2, multiclass
D23V3, multiclass
D23V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                       14                             33
  CLUS_2                        3                             70
  CLUS_3                        3                             17
D23V5, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                        2                             31
  CLUS_2                        6                             37
  CLUS_3                        2                             11
  CLUS_4                       10                             27
D23V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.23) CNV          9   11
  DEL PEAK  1(1P36.23) WILD-TYPE   79   27
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                        9                             79
  CLUS_2                       11                             27
D23V7, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                        4                             46
  CLUS_2                        3                             31
  CLUS_3                       13                             29
D23V8, multiclass
        clus
vv       DEL PEAK  1(1P36.23) CNV DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                        3                             44
  CLUS_2                        5                             36
  CLUS_3                       12                             26

Clustering(24) Variable = Del Peak  2(2q22.1)
D24V1, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                      10                            44
  CLUS_2                      10                            33
  CLUS_3                       9                            49
D24V2, multiclass
D24V3, multiclass
D24V4, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                       9                            38
  CLUS_2                      17                            56
  CLUS_3                       2                            18
D24V5, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                       3                            30
  CLUS_2                      10                            33
  CLUS_3                       3                            10
  CLUS_4                       6                            31
D24V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) CNV         16    6
  DEL PEAK  2(2Q22.1) WILD-TYPE   72   32
        clus
vv       DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                      16                            72
  CLUS_2                       6                            32
D24V7, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                      10                            40
  CLUS_2                       7                            27
  CLUS_3                       5                            37
D24V8, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) CNV DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                       7                            40
  CLUS_2                       9                            32
  CLUS_3                       6                            32

Clustering(25) Variable = Del Peak  3(2q37.1)
D25V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.1) CNV DEL PEAK  3(2Q37.1) WILD-TYPE
  CLUS_1                      20                            34
  CLUS_2                      23                            20
  CLUS_3                      19                            39
D25V2, multiclass
D25V3, multiclass
D25V4, multiclass
        clus
vv       DEL PEAK  3(2Q37.1) CNV DEL PEAK  3(2Q37.1) WILD-TYPE
  CLUS_1                      15                            32
  CLUS_2                      35                            38
  CLUS_3                       8                            12
D25V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.1) CNV DEL PEAK  3(2Q37.1) WILD-TYPE
  CLUS_1                      13                            20
  CLUS_2                      23                            20
  CLUS_3                       4                             9
  CLUS_4                      11                            26
D25V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.1) CNV         43    8
  DEL PEAK  3(2Q37.1) WILD-TYPE   45   30
        clus
vv       DEL PEAK  3(2Q37.1) CNV DEL PEAK  3(2Q37.1) WILD-TYPE
  CLUS_1                      43                            45
  CLUS_2                       8                            30
D25V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.1) CNV DEL PEAK  3(2Q37.1) WILD-TYPE
  CLUS_1                      26                            24
  CLUS_2                      11                            23
  CLUS_3                      14                            28
D25V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.1) CNV DEL PEAK  3(2Q37.1) WILD-TYPE
  CLUS_1                      22                            25
  CLUS_2                      20                            21
  CLUS_3                       9                            29

Clustering(26) Variable = Del Peak  4(3p22.1)
D26V1, multiclass
        clus
vv       DEL PEAK  4(3P22.1) CNV DEL PEAK  4(3P22.1) WILD-TYPE
  CLUS_1                      18                            36
  CLUS_2                      26                            17
  CLUS_3                      10                            48
D26V2, multiclass
D26V3, multiclass
D26V4, multiclass
        clus
vv       DEL PEAK  4(3P22.1) CNV DEL PEAK  4(3P22.1) WILD-TYPE
  CLUS_1                       8                            39
  CLUS_2                      33                            40
  CLUS_3                      10                            10
D26V5, multiclass
        clus
vv       DEL PEAK  4(3P22.1) CNV DEL PEAK  4(3P22.1) WILD-TYPE
  CLUS_1                      13                            20
  CLUS_2                      21                            22
  CLUS_3                       2                            11
  CLUS_4                       9                            28
D26V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P22.1) CNV         37    8
  DEL PEAK  4(3P22.1) WILD-TYPE   51   30
        clus
vv       DEL PEAK  4(3P22.1) CNV DEL PEAK  4(3P22.1) WILD-TYPE
  CLUS_1                      37                            51
  CLUS_2                       8                            30
D26V7, multiclass
        clus
vv       DEL PEAK  4(3P22.1) CNV DEL PEAK  4(3P22.1) WILD-TYPE
  CLUS_1                      22                            28
  CLUS_2                      13                            21
  CLUS_3                      10                            32
D26V8, multiclass
        clus
vv       DEL PEAK  4(3P22.1) CNV DEL PEAK  4(3P22.1) WILD-TYPE
  CLUS_1                      18                            29
  CLUS_2                      18                            23
  CLUS_3                       9                            29

Clustering(27) Variable = Del Peak  5(3p14.2)
D27V1, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                      22                            32
  CLUS_2                      31                            12
  CLUS_3                       9                            49
D27V2, multiclass
D27V3, multiclass
D27V4, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                      12                            35
  CLUS_2                      36                            37
  CLUS_3                      11                             9
D27V5, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                      14                            19
  CLUS_2                      26                            17
  CLUS_3                       3                            10
  CLUS_4                       9                            28
D27V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(3P14.2) CNV         44    8
  DEL PEAK  5(3P14.2) WILD-TYPE   44   30
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                      44                            44
  CLUS_2                       8                            30
D27V7, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                      26                            24
  CLUS_2                      14                            20
  CLUS_3                      12                            30
D27V8, multiclass
        clus
vv       DEL PEAK  5(3P14.2) CNV DEL PEAK  5(3P14.2) WILD-TYPE
  CLUS_1                      21                            26
  CLUS_2                      22                            19
  CLUS_3                       9                            29

Clustering(28) Variable = Del Peak  6(4q22.1)
D28V1, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                      16                            38
  CLUS_2                      22                            21
  CLUS_3                       6                            52
D28V2, multiclass
D28V3, multiclass
D28V4, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                      15                            32
  CLUS_2                      16                            57
  CLUS_3                       8                            12
D28V5, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                      10                            23
  CLUS_2                      16                            27
  CLUS_3                       3                            10
  CLUS_4                      10                            27
D28V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q22.1) CNV         29   10
  DEL PEAK  6(4Q22.1) WILD-TYPE   59   28
        clus
vv       DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                      29                            59
  CLUS_2                      10                            28
D28V7, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                      16                            34
  CLUS_2                       8                            26
  CLUS_3                      15                            27
D28V8, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) CNV DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                      12                            35
  CLUS_2                      16                            25
  CLUS_3                      11                            27

Clustering(29) Variable = Del Peak  7(4q35.2)
D29V1, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                      20                            34
  CLUS_2                      24                            19
  CLUS_3                      13                            45
D29V2, multiclass
D29V3, multiclass
D29V4, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                      20                            27
  CLUS_2                      20                            53
  CLUS_3                      11                             9
D29V5, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                      10                            23
  CLUS_2                      19                            24
  CLUS_3                       5                             8
  CLUS_4                      13                            24
D29V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(4Q35.2) CNV         35   12
  DEL PEAK  7(4Q35.2) WILD-TYPE   53   26
        clus
vv       DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                      35                            53
  CLUS_2                      12                            26
D29V7, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                      16                            34
  CLUS_2                      11                            23
  CLUS_3                      20                            22
D29V8, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) CNV DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                      15                            32
  CLUS_2                      18                            23
  CLUS_3                      14                            24

Clustering(30) Variable = Del Peak  8(5q15)
D30V1, multiclass
        clus
vv       DEL PEAK  8(5Q15) CNV DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                    16                          38
  CLUS_2                    19                          24
  CLUS_3                     6                          52
D30V2, multiclass
D30V3, multiclass
D30V4, multiclass
        clus
vv       DEL PEAK  8(5Q15) CNV DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                    11                          36
  CLUS_2                    24                          49
  CLUS_3                     5                          15
D30V5, multiclass
        clus
vv       DEL PEAK  8(5Q15) CNV DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                    13                          20
  CLUS_2                    13                          30
  CLUS_3                     1                          12
  CLUS_4                     9                          28
D30V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  8(5Q15) CNV         29    7
  DEL PEAK  8(5Q15) WILD-TYPE   59   31
        clus
vv       DEL PEAK  8(5Q15) CNV DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                    29                          59
  CLUS_2                     7                          31
D30V7, multiclass
        clus
vv       DEL PEAK  8(5Q15) CNV DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                    16                          34
  CLUS_2                    10                          24
  CLUS_3                    10                          32
D30V8, multiclass
        clus
vv       DEL PEAK  8(5Q15) CNV DEL PEAK  8(5Q15) WILD-TYPE
  CLUS_1                    15                          32
  CLUS_2                    12                          29
  CLUS_3                     9                          29

Clustering(31) Variable = Del Peak  9(5q35.2)
D31V1, multiclass
        clus
vv       DEL PEAK  9(5Q35.2) CNV DEL PEAK  9(5Q35.2) WILD-TYPE
  CLUS_1                      15                            39
  CLUS_2                      19                            24
  CLUS_3                       8                            50
D31V2, multiclass
D31V3, multiclass
D31V4, multiclass
        clus
vv       DEL PEAK  9(5Q35.2) CNV DEL PEAK  9(5Q35.2) WILD-TYPE
  CLUS_1                      12                            35
  CLUS_2                      23                            50
  CLUS_3                       4                            16
D31V5, multiclass
        clus
vv       DEL PEAK  9(5Q35.2) CNV DEL PEAK  9(5Q35.2) WILD-TYPE
  CLUS_1                      10                            23
  CLUS_2                      14                            29
  CLUS_3                       1                            12
  CLUS_4                      11                            26
D31V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(5Q35.2) CNV         28    8
  DEL PEAK  9(5Q35.2) WILD-TYPE   60   30
        clus
vv       DEL PEAK  9(5Q35.2) CNV DEL PEAK  9(5Q35.2) WILD-TYPE
  CLUS_1                      28                            60
  CLUS_2                       8                            30
D31V7, multiclass
        clus
vv       DEL PEAK  9(5Q35.2) CNV DEL PEAK  9(5Q35.2) WILD-TYPE
  CLUS_1                      16                            34
  CLUS_2                       9                            25
  CLUS_3                      11                            31
D31V8, multiclass
        clus
vv       DEL PEAK  9(5Q35.2) CNV DEL PEAK  9(5Q35.2) WILD-TYPE
  CLUS_1                      12                            35
  CLUS_2                      14                            27
  CLUS_3                      10                            28

Clustering(32) Variable = Del Peak 10(6p24.2)
D32V1, multiclass
        clus
vv       DEL PEAK 10(6P24.2) CNV DEL PEAK 10(6P24.2) WILD-TYPE
  CLUS_1                      10                            44
  CLUS_2                       7                            36
  CLUS_3                       6                            52
D32V2, multiclass
D32V3, multiclass
D32V4, multiclass
        clus
vv       DEL PEAK 10(6P24.2) CNV DEL PEAK 10(6P24.2) WILD-TYPE
  CLUS_1                       4                            43
  CLUS_2                      15                            58
  CLUS_3                       2                            18
D32V5, multiclass
        clus
vv       DEL PEAK 10(6P24.2) CNV DEL PEAK 10(6P24.2) WILD-TYPE
  CLUS_1                       6                            27
  CLUS_2                       7                            36
  CLUS_3                       1                            12
  CLUS_4                       4                            33
D32V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6P24.2) CNV         13    5
  DEL PEAK 10(6P24.2) WILD-TYPE   75   33
        clus
vv       DEL PEAK 10(6P24.2) CNV DEL PEAK 10(6P24.2) WILD-TYPE
  CLUS_1                      13                            75
  CLUS_2                       5                            33
D32V7, multiclass
        clus
vv       DEL PEAK 10(6P24.2) CNV DEL PEAK 10(6P24.2) WILD-TYPE
  CLUS_1                       7                            43
  CLUS_2                       6                            28
  CLUS_3                       5                            37
D32V8, multiclass
        clus
vv       DEL PEAK 10(6P24.2) CNV DEL PEAK 10(6P24.2) WILD-TYPE
  CLUS_1                       7                            40
  CLUS_2                       5                            36
  CLUS_3                       6                            32

Clustering(33) Variable = Del Peak 11(6q26)
D33V1, multiclass
        clus
vv       DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                    19                          35
  CLUS_2                    20                          23
  CLUS_3                    16                          42
D33V2, multiclass
D33V3, multiclass
D33V4, multiclass
        clus
vv       DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                    17                          30
  CLUS_2                    27                          46
  CLUS_3                     5                          15
D33V5, multiclass
        clus
vv       DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                    12                          21
  CLUS_2                    18                          25
  CLUS_3                     5                           8
  CLUS_4                    13                          24
D33V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(6Q26) CNV         34   14
  DEL PEAK 11(6Q26) WILD-TYPE   54   24
        clus
vv       DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                    34                          54
  CLUS_2                    14                          24
D33V7, multiclass
        clus
vv       DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                    20                          30
  CLUS_2                    12                          22
  CLUS_3                    16                          26
D33V8, multiclass
        clus
vv       DEL PEAK 11(6Q26) CNV DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                    17                          30
  CLUS_2                    16                          25
  CLUS_3                    15                          23

Clustering(34) Variable = Del Peak 12(7q34)
D34V1, multiclass
        clus
vv       DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE
  CLUS_1                    10                          44
  CLUS_2                    14                          29
  CLUS_3                    10                          48
D34V2, multiclass
D34V3, multiclass
D34V4, multiclass
        clus
vv       DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE
  CLUS_1                    13                          34
  CLUS_2                    15                          58
  CLUS_3                     4                          16
D34V5, multiclass
        clus
vv       DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE
  CLUS_1                     4                          29
  CLUS_2                    14                          29
  CLUS_3                     2                          11
  CLUS_4                     8                          29
D34V6, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 12(7Q34) CNV         21    7
  DEL PEAK 12(7Q34) WILD-TYPE   67   31
        clus
vv       DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE
  CLUS_1                    21                          67
  CLUS_2                     7                          31
D34V7, multiclass
        clus
vv       DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE
  CLUS_1                    12                          38
  CLUS_2                     5                          29
  CLUS_3                    11                          31
D34V8, multiclass
        clus
vv       DEL PEAK 12(7Q34) CNV DEL PEAK 12(7Q34) WILD-TYPE
  CLUS_1                     8                          39
  CLUS_2                    12                          29
  CLUS_3                     8                          30

Clustering(35) Variable = Del Peak 13(10q23.31)
D35V1, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                        16                              38
  CLUS_2                        14                              29
  CLUS_3                        13                              45
D35V2, multiclass
D35V3, multiclass
D35V4, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                        15                              32
  CLUS_2                        16                              57
  CLUS_3                         9                              11
D35V5, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                        10                              23
  CLUS_2                        14                              29
  CLUS_3                         5                               8
  CLUS_4                        11                              26
D35V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) CNV         28   12
  DEL PEAK 13(10Q23.31) WILD-TYPE   60   26
        clus
vv       DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                        28                              60
  CLUS_2                        12                              26
D35V7, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                        15                              35
  CLUS_2                        12                              22
  CLUS_3                        13                              29
D35V8, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) CNV DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                        13                              34
  CLUS_2                        14                              27
  CLUS_3                        13                              25

Clustering(36) Variable = Del Peak 14(11p15.5)
D36V1, multiclass
        clus
vv       DEL PEAK 14(11P15.5) CNV DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                       20                             34
  CLUS_2                       17                             26
  CLUS_3                       12                             46
D36V2, multiclass
D36V3, multiclass
D36V4, multiclass
        clus
vv       DEL PEAK 14(11P15.5) CNV DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                        9                             38
  CLUS_2                       28                             45
  CLUS_3                        9                             11
D36V5, multiclass
        clus
vv       DEL PEAK 14(11P15.5) CNV DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                       12                             21
  CLUS_2                       17                             26
  CLUS_3                        3                             10
  CLUS_4                        7                             30
D36V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(11P15.5) CNV         31    8
  DEL PEAK 14(11P15.5) WILD-TYPE   57   30
        clus
vv       DEL PEAK 14(11P15.5) CNV DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                       31                             57
  CLUS_2                        8                             30
D36V7, multiclass
        clus
vv       DEL PEAK 14(11P15.5) CNV DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                       21                             29
  CLUS_2                        9                             25
  CLUS_3                        9                             33
D36V8, multiclass
        clus
vv       DEL PEAK 14(11P15.5) CNV DEL PEAK 14(11P15.5) WILD-TYPE
  CLUS_1                       15                             32
  CLUS_2                       16                             25
  CLUS_3                        8                             30

Clustering(37) Variable = Del Peak 15(11q25)
D37V1, multiclass
        clus
vv       DEL PEAK 15(11Q25) CNV DEL PEAK 15(11Q25) WILD-TYPE
  CLUS_1                     40                           14
  CLUS_2                     26                           17
  CLUS_3                     22                           36
D37V2, multiclass
D37V3, multiclass
D37V4, multiclass
        clus
vv       DEL PEAK 15(11Q25) CNV DEL PEAK 15(11Q25) WILD-TYPE
  CLUS_1                     19                           28
  CLUS_2                     44                           29
  CLUS_3                     16                            4
D37V5, multiclass
        clus
vv       DEL PEAK 15(11Q25) CNV DEL PEAK 15(11Q25) WILD-TYPE
  CLUS_1                     22                           11
  CLUS_2                     29                           14
  CLUS_3                      5                            8
  CLUS_4                     19                           18
D37V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 15(11Q25) CNV         56   19
  DEL PEAK 15(11Q25) WILD-TYPE   32   19
        clus
vv       DEL PEAK 15(11Q25) CNV DEL PEAK 15(11Q25) WILD-TYPE
  CLUS_1                     56                           32
  CLUS_2                     19                           19
D37V7, multiclass
        clus
vv       DEL PEAK 15(11Q25) CNV DEL PEAK 15(11Q25) WILD-TYPE
  CLUS_1                     37                           13
  CLUS_2                     17                           17
  CLUS_3                     21                           21
D37V8, multiclass
        clus
vv       DEL PEAK 15(11Q25) CNV DEL PEAK 15(11Q25) WILD-TYPE
  CLUS_1                     29                           18
  CLUS_2                     26                           15
  CLUS_3                     20                           18

Clustering(38) Variable = Del Peak 16(13q12.12)
D38V1, multiclass
        clus
vv       DEL PEAK 16(13Q12.12) CNV DEL PEAK 16(13Q12.12) WILD-TYPE
  CLUS_1                        18                              36
  CLUS_2                        23                              20
  CLUS_3                        12                              46
D38V2, multiclass
D38V3, multiclass
D38V4, multiclass
        clus
vv       DEL PEAK 16(13Q12.12) CNV DEL PEAK 16(13Q12.12) WILD-TYPE
  CLUS_1                        13                              34
  CLUS_2                        26                              47
  CLUS_3                         8                              12
D38V5, multiclass
        clus
vv       DEL PEAK 16(13Q12.12) CNV DEL PEAK 16(13Q12.12) WILD-TYPE
  CLUS_1                        15                              18
  CLUS_2                        20                              23
  CLUS_3                         4                               9
  CLUS_4                        10                              27
D38V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 16(13Q12.12) CNV         39   10
  DEL PEAK 16(13Q12.12) WILD-TYPE   49   28
        clus
vv       DEL PEAK 16(13Q12.12) CNV DEL PEAK 16(13Q12.12) WILD-TYPE
  CLUS_1                        39                              49
  CLUS_2                        10                              28
D38V7, multiclass
        clus
vv       DEL PEAK 16(13Q12.12) CNV DEL PEAK 16(13Q12.12) WILD-TYPE
  CLUS_1                        26                              24
  CLUS_2                        12                              22
  CLUS_3                        11                              31
D38V8, multiclass
        clus
vv       DEL PEAK 16(13Q12.12) CNV DEL PEAK 16(13Q12.12) WILD-TYPE
  CLUS_1                        18                              29
  CLUS_2                        19                              22
  CLUS_3                        12                              26

Clustering(39) Variable = Del Peak 17(13q14.2)
D39V1, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) CNV DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                       19                             35
  CLUS_2                       25                             18
  CLUS_3                       13                             45
D39V2, multiclass
D39V3, multiclass
D39V4, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) CNV DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                       13                             34
  CLUS_2                       25                             48
  CLUS_3                       12                              8
D39V5, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) CNV DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                       14                             19
  CLUS_2                       24                             19
  CLUS_3                        5                              8
  CLUS_4                       10                             27
D39V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(13Q14.2) CNV         41   12
  DEL PEAK 17(13Q14.2) WILD-TYPE   47   26
        clus
vv       DEL PEAK 17(13Q14.2) CNV DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                       41                             47
  CLUS_2                       12                             26
D39V7, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) CNV DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                       29                             21
  CLUS_2                       12                             22
  CLUS_3                       12                             30
D39V8, multiclass
        clus
vv       DEL PEAK 17(13Q14.2) CNV DEL PEAK 17(13Q14.2) WILD-TYPE
  CLUS_1                       19                             28
  CLUS_2                       21                             20
  CLUS_3                       13                             25

Clustering(40) Variable = Del Peak 18(14q32.31)
D40V1, multiclass
        clus
vv       DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE
  CLUS_1                         8                              46
  CLUS_2                        12                              31
  CLUS_3                         8                              50
D40V2, multiclass
D40V3, multiclass
D40V4, multiclass
        clus
vv       DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE
  CLUS_1                        14                              33
  CLUS_2                         4                              69
  CLUS_3                         6                              14
D40V5, multiclass
        clus
vv       DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE
  CLUS_1                         3                              30
  CLUS_2                         5                              38
  CLUS_3                         5                               8
  CLUS_4                        12                              25
D40V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(14Q32.31) CNV         14   11
  DEL PEAK 18(14Q32.31) WILD-TYPE   74   27
        clus
vv       DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE
  CLUS_1                        14                              74
  CLUS_2                        11                              27
D40V7, multiclass
        clus
vv       DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE
  CLUS_1                         4                              46
  CLUS_2                         6                              28
  CLUS_3                        15                              27
D40V8, multiclass
        clus
vv       DEL PEAK 18(14Q32.31) CNV DEL PEAK 18(14Q32.31) WILD-TYPE
  CLUS_1                         4                              43
  CLUS_2                         8                              33
  CLUS_3                        13                              25

Clustering(41) Variable = Del Peak 19(15q15.1)
D41V1, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                       13                             41
  CLUS_2                       16                             27
  CLUS_3                        5                             53
D41V2, multiclass
D41V3, multiclass
D41V4, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                       13                             34
  CLUS_2                       14                             59
  CLUS_3                        4                             16
D41V5, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                        4                             29
  CLUS_2                       14                             29
  CLUS_3                        1                             12
  CLUS_4                       10                             27
D41V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(15Q15.1) CNV         20    9
  DEL PEAK 19(15Q15.1) WILD-TYPE   68   29
        clus
vv       DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                       20                             68
  CLUS_2                        9                             29
D41V7, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                       15                             35
  CLUS_2                        3                             31
  CLUS_3                       11                             31
D41V8, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) CNV DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                        5                             42
  CLUS_2                       14                             27
  CLUS_3                       10                             28

Clustering(42) Variable = Del Peak 20(16q11.2)
D42V1, multiclass
        clus
vv       DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE
  CLUS_1                       11                             43
  CLUS_2                        6                             37
  CLUS_3                       11                             47
D42V2, multiclass
D42V3, multiclass
D42V4, multiclass
        clus
vv       DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE
  CLUS_1                       12                             35
  CLUS_2                        9                             64
  CLUS_3                        5                             15
D42V5, multiclass
        clus
vv       DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE
  CLUS_1                        4                             29
  CLUS_2                        6                             37
  CLUS_3                        2                             11
  CLUS_4                       13                             24
D42V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(16Q11.2) CNV         11   14
  DEL PEAK 20(16Q11.2) WILD-TYPE   77   24
        clus
vv       DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE
  CLUS_1                       11                             77
  CLUS_2                       14                             24
D42V7, multiclass
        clus
vv       DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE
  CLUS_1                        5                             45
  CLUS_2                        4                             30
  CLUS_3                       16                             26
D42V8, multiclass
        clus
vv       DEL PEAK 20(16Q11.2) CNV DEL PEAK 20(16Q11.2) WILD-TYPE
  CLUS_1                        5                             42
  CLUS_2                        6                             35
  CLUS_3                       14                             24

Clustering(43) Variable = Del Peak 21(16q23.1)
D43V1, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                       11                             43
  CLUS_2                        7                             36
  CLUS_3                       13                             45
D43V2, multiclass
D43V3, multiclass
D43V4, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                       16                             31
  CLUS_2                        5                             68
  CLUS_3                        7                             13
D43V5, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                        2                             31
  CLUS_2                        9                             34
  CLUS_3                        3                             10
  CLUS_4                       14                             23
D43V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) CNV         12   16
  DEL PEAK 21(16Q23.1) WILD-TYPE   76   22
        clus
vv       DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                       12                             76
  CLUS_2                       16                             22
D43V7, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                        6                             44
  CLUS_2                        4                             30
  CLUS_3                       18                             24
D43V8, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) CNV DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                        5                             42
  CLUS_2                        7                             34
  CLUS_3                       16                             22

Clustering(44) Variable = Del Peak 22(17p12)
D44V1, multiclass
        clus
vv       DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                     20                           34
  CLUS_2                     18                           25
  CLUS_3                      9                           49
D44V2, multiclass
D44V3, multiclass
D44V4, multiclass
        clus
vv       DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                     12                           35
  CLUS_2                     22                           51
  CLUS_3                      8                           12
D44V5, multiclass
        clus
vv       DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                     10                           23
  CLUS_2                     19                           24
  CLUS_3                      6                            7
  CLUS_4                      7                           30
D44V6, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) CNV         33    9
  DEL PEAK 22(17P12) WILD-TYPE   55   29
        clus
vv       DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                     33                           55
  CLUS_2                      9                           29
D44V7, multiclass
        clus
vv       DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                     21                           29
  CLUS_2                     10                           24
  CLUS_3                     11                           31
D44V8, multiclass
        clus
vv       DEL PEAK 22(17P12) CNV DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                     16                           31
  CLUS_2                     16                           25
  CLUS_3                     10                           28

Clustering(45) Variable = Del Peak 23(17q25.3)
D45V1, multiclass
        clus
vv       DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                        8                             46
  CLUS_2                       12                             31
  CLUS_3                        7                             51
D45V2, multiclass
D45V3, multiclass
D45V4, multiclass
        clus
vv       DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                        3                             44
  CLUS_2                       20                             53
  CLUS_3                        1                             19
D45V5, multiclass
        clus
vv       DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                        5                             28
  CLUS_2                       14                             29
  CLUS_3                        1                             12
  CLUS_4                        2                             35
D45V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(17Q25.3) CNV         20    2
  DEL PEAK 23(17Q25.3) WILD-TYPE   68   36
        clus
vv       DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                       20                             68
  CLUS_2                        2                             36
D45V7, multiclass
        clus
vv       DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                       15                             35
  CLUS_2                        5                             29
  CLUS_3                        2                             40
D45V8, multiclass
        clus
vv       DEL PEAK 23(17Q25.3) CNV DEL PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                        7                             40
  CLUS_2                       13                             28
  CLUS_3                        2                             36

Clustering(46) Variable = Del Peak 24(19p13.3)
D46V1, multiclass
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                       18                             36
  CLUS_2                       20                             23
  CLUS_3                        9                             49
D46V2, multiclass
D46V3, multiclass
D46V4, multiclass
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                       19                             28
  CLUS_2                       19                             54
  CLUS_3                        6                             14
D46V5, multiclass
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                        6                             27
  CLUS_2                       14                             29
  CLUS_3                        4                              9
  CLUS_4                       15                             22
D46V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) CNV         24   15
  DEL PEAK 24(19P13.3) WILD-TYPE   64   23
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                       24                             64
  CLUS_2                       15                             23
D46V7, multiclass
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                       15                             35
  CLUS_2                        7                             27
  CLUS_3                       17                             25
D46V8, multiclass
        clus
vv       DEL PEAK 24(19P13.3) CNV DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                        6                             41
  CLUS_2                       18                             23
  CLUS_3                       15                             23

Clustering(47) Variable = Del Peak 25(19q13.33)
D47V1, multiclass
        clus
vv       DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE
  CLUS_1                        10                              44
  CLUS_2                         8                              35
  CLUS_3                         3                              55
D47V2, multiclass
D47V3, multiclass
D47V4, multiclass
        clus
vv       DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE
  CLUS_1                         6                              41
  CLUS_2                         9                              64
  CLUS_3                         4                              16
D47V5, multiclass
        clus
vv       DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE
  CLUS_1                         4                              29
  CLUS_2                         4                              39
  CLUS_3                         2                              11
  CLUS_4                         6                              31
D47V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(19Q13.33) CNV          9    7
  DEL PEAK 25(19Q13.33) WILD-TYPE   79   31
        clus
vv       DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE
  CLUS_1                         9                              79
  CLUS_2                         7                              31
D47V7, multiclass
        clus
vv       DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE
  CLUS_1                         5                              45
  CLUS_2                         5                              29
  CLUS_3                         6                              36
D47V8, multiclass
        clus
vv       DEL PEAK 25(19Q13.33) CNV DEL PEAK 25(19Q13.33) WILD-TYPE
  CLUS_1                         5                              42
  CLUS_2                         4                              37
  CLUS_3                         7                              31

Clustering(48) Variable = Del Peak 26(20p12.1)
D48V1, multiclass
        clus
vv       DEL PEAK 26(20P12.1) CNV DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                        7                             47
  CLUS_2                        7                             36
  CLUS_3                        7                             51
D48V2, multiclass
D48V3, multiclass
D48V4, multiclass
        clus
vv       DEL PEAK 26(20P12.1) CNV DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                        4                             43
  CLUS_2                       12                             61
  CLUS_3                        1                             19
D48V5, multiclass
        clus
vv       DEL PEAK 26(20P12.1) CNV DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                        5                             28
  CLUS_2                        6                             37
  CLUS_3                        0                             13
  CLUS_4                        6                             31
D48V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(20P12.1) CNV         12    5
  DEL PEAK 26(20P12.1) WILD-TYPE   76   33
        clus
vv       DEL PEAK 26(20P12.1) CNV DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                       12                             76
  CLUS_2                        5                             33
D48V7, multiclass
        clus
vv       DEL PEAK 26(20P12.1) CNV DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                       10                             40
  CLUS_2                        2                             32
  CLUS_3                        5                             37
D48V8, multiclass
        clus
vv       DEL PEAK 26(20P12.1) CNV DEL PEAK 26(20P12.1) WILD-TYPE
  CLUS_1                        5                             42
  CLUS_2                        7                             34
  CLUS_3                        5                             33

Clustering(49) Variable = Del Peak 27(21q21.1)
D49V1, multiclass
        clus
vv       DEL PEAK 27(21Q21.1) CNV DEL PEAK 27(21Q21.1) WILD-TYPE
  CLUS_1                       12                             42
  CLUS_2                       12                             31
  CLUS_3                        6                             52
D49V2, multiclass
D49V3, multiclass
D49V4, multiclass
        clus
vv       DEL PEAK 27(21Q21.1) CNV DEL PEAK 27(21Q21.1) WILD-TYPE
  CLUS_1                       13                             34
  CLUS_2                       11                             62
  CLUS_3                        4                             16
D49V5, multiclass
        clus
vv       DEL PEAK 27(21Q21.1) CNV DEL PEAK 27(21Q21.1) WILD-TYPE
  CLUS_1                        8                             25
  CLUS_2                        9                             34
  CLUS_3                        2                             11
  CLUS_4                        8                             29
D49V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(21Q21.1) CNV         19    8
  DEL PEAK 27(21Q21.1) WILD-TYPE   69   30
        clus
vv       DEL PEAK 27(21Q21.1) CNV DEL PEAK 27(21Q21.1) WILD-TYPE
  CLUS_1                       19                             69
  CLUS_2                        8                             30
D49V7, multiclass
        clus
vv       DEL PEAK 27(21Q21.1) CNV DEL PEAK 27(21Q21.1) WILD-TYPE
  CLUS_1                       13                             37
  CLUS_2                        7                             27
  CLUS_3                        7                             35
D49V8, multiclass
        clus
vv       DEL PEAK 27(21Q21.1) CNV DEL PEAK 27(21Q21.1) WILD-TYPE
  CLUS_1                        8                             39
  CLUS_2                       11                             30
  CLUS_3                        8                             30

Clustering(50) Variable = Del Peak 28(22q13.32)
D50V1, multiclass
        clus
vv       DEL PEAK 28(22Q13.32) CNV DEL PEAK 28(22Q13.32) WILD-TYPE
  CLUS_1                        18                              36
  CLUS_2                        16                              27
  CLUS_3                        10                              48
D50V2, multiclass
D50V3, multiclass
D50V4, multiclass
        clus
vv       DEL PEAK 28(22Q13.32) CNV DEL PEAK 28(22Q13.32) WILD-TYPE
  CLUS_1                        19                              28
  CLUS_2                        19                              54
  CLUS_3                         4                              16
D50V5, multiclass
        clus
vv       DEL PEAK 28(22Q13.32) CNV DEL PEAK 28(22Q13.32) WILD-TYPE
  CLUS_1                         7                              26
  CLUS_2                        12                              31
  CLUS_3                         5                               8
  CLUS_4                        13                              24
D50V6, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 28(22Q13.32) CNV         23   14
  DEL PEAK 28(22Q13.32) WILD-TYPE   65   24
        clus
vv       DEL PEAK 28(22Q13.32) CNV DEL PEAK 28(22Q13.32) WILD-TYPE
  CLUS_1                        23                              65
  CLUS_2                        14                              24
D50V7, multiclass
        clus
vv       DEL PEAK 28(22Q13.32) CNV DEL PEAK 28(22Q13.32) WILD-TYPE
  CLUS_1                        11                              39
  CLUS_2                        11                              23
  CLUS_3                        15                              27
D50V8, multiclass
        clus
vv       DEL PEAK 28(22Q13.32) CNV DEL PEAK 28(22Q13.32) WILD-TYPE
  CLUS_1                        10                              37
  CLUS_2                        13                              28
  CLUS_3                        14                              24

Clustering(51) Variable = Del Peak 29(Xp11.3)
D51V1, multiclass
        clus
vv       DEL PEAK 29(XP11.3) CNV DEL PEAK 29(XP11.3) WILD-TYPE
  CLUS_1                      14                            40
  CLUS_2                      19                            24
  CLUS_3                      10                            48
D51V2, multiclass
D51V3, multiclass
D51V4, multiclass
        clus
vv       DEL PEAK 29(XP11.3) CNV DEL PEAK 29(XP11.3) WILD-TYPE
  CLUS_1                      10                            37
  CLUS_2                      24                            49
  CLUS_3                       6                            14
D51V5, multiclass
        clus
vv       DEL PEAK 29(XP11.3) CNV DEL PEAK 29(XP11.3) WILD-TYPE
  CLUS_1                       9                            24
  CLUS_2                      21                            22
  CLUS_3                       0                            13
  CLUS_4                       7                            30
D51V6, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 29(XP11.3) CNV         29    8
  DEL PEAK 29(XP11.3) WILD-TYPE   59   30
        clus
vv       DEL PEAK 29(XP11.3) CNV DEL PEAK 29(XP11.3) WILD-TYPE
  CLUS_1                      29                            59
  CLUS_2                       8                            30
D51V7, multiclass
        clus
vv       DEL PEAK 29(XP11.3) CNV DEL PEAK 29(XP11.3) WILD-TYPE
  CLUS_1                      21                            29
  CLUS_2                       6                            28
  CLUS_3                      10                            32
D51V8, multiclass
        clus
vv       DEL PEAK 29(XP11.3) CNV DEL PEAK 29(XP11.3) WILD-TYPE
  CLUS_1                      12                            35
  CLUS_2                      17                            24
  CLUS_3                       8                            30

Clustering(52) Variable = Del Peak 30(Xq21.33)
D52V1, multiclass
        clus
vv       DEL PEAK 30(XQ21.33) CNV DEL PEAK 30(XQ21.33) WILD-TYPE
  CLUS_1                       13                             41
  CLUS_2                       15                             28
  CLUS_3                        7                             51
D52V2, multiclass
D52V3, multiclass
D52V4, multiclass
        clus
vv       DEL PEAK 30(XQ21.33) CNV DEL PEAK 30(XQ21.33) WILD-TYPE
  CLUS_1                        6                             41
  CLUS_2                       22                             51
  CLUS_3                        6                             14
D52V5, multiclass
        clus
vv       DEL PEAK 30(XQ21.33) CNV DEL PEAK 30(XQ21.33) WILD-TYPE
  CLUS_1                        7                             26
  CLUS_2                       15                             28
  CLUS_3                        0                             13
  CLUS_4                        5                             32
D52V6, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(XQ21.33) CNV         22    5
  DEL PEAK 30(XQ21.33) WILD-TYPE   66   33
        clus
vv       DEL PEAK 30(XQ21.33) CNV DEL PEAK 30(XQ21.33) WILD-TYPE
  CLUS_1                       22                             66
  CLUS_2                        5                             33
D52V7, multiclass
        clus
vv       DEL PEAK 30(XQ21.33) CNV DEL PEAK 30(XQ21.33) WILD-TYPE
  CLUS_1                       14                             36
  CLUS_2                        5                             29
  CLUS_3                        8                             34
D52V8, multiclass
        clus
vv       DEL PEAK 30(XQ21.33) CNV DEL PEAK 30(XQ21.33) WILD-TYPE
  CLUS_1                        8                             39
  CLUS_2                       14                             27
  CLUS_3                        5                             33
                           V1                            V2 
                    "CN_CNMF"            "METHLYATION_CNMF" 
                           V3                            V4 
               "MRNASEQ_CNMF"       "MRNASEQ_CHIERARCHICAL" 
                           V5                            V6 
                "MIRSEQ_CNMF"        "MIRSEQ_CHIERARCHICAL" 
                           V7                            V8 
         "MIRSEQ_MATURE_CNMF" "MIRSEQ_MATURE_CHIERARCHICAL" 
> q(save="no")
