Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-A6-2671-01A-01D-1405-02	TCGA-A6-2674-01A-02D-1167-02	TCGA-A6-2676-01A-01D-1167-02	TCGA-A6-2678-01A-01D-1167-02	TCGA-A6-2679-01A-02D-1405-02	TCGA-A6-2680-01A-01D-1405-02	TCGA-A6-2681-01A-01D-1405-02	TCGA-A6-2683-01A-01D-1167-02	TCGA-A6-2684-01A-01D-1405-02	TCGA-A6-3807-01A-01D-1167-02	TCGA-AA-3494-01A-01D-1405-02	TCGA-AA-3495-01A-01D-1405-02	TCGA-AA-3509-01A-01D-1405-02	TCGA-AA-3514-01A-02D-1547-02	TCGA-AA-3516-01A-02D-1167-02	TCGA-AA-3529-01A-02D-1547-02	TCGA-AA-3548-01A-01D-1167-02	TCGA-AA-3549-01A-02D-1167-02	TCGA-AA-3553-01A-01D-1167-02	TCGA-AA-3555-01A-01D-1637-02	TCGA-AA-3558-01A-01D-1167-02	TCGA-AA-3664-01A-01D-1167-02	TCGA-AA-3666-01A-02D-1167-02	TCGA-AA-3672-01A-01D-0957-02	TCGA-AA-3675-01A-02D-1167-02	TCGA-AA-3685-01A-02D-1167-02	TCGA-AA-3688-01A-01D-0957-02	TCGA-AA-3692-01A-01D-0957-02	TCGA-AA-3693-01A-01D-0957-02	TCGA-AA-3715-01A-01D-0957-02	TCGA-AA-3861-01A-01D-1167-02	TCGA-AA-3947-01A-01D-1167-02	TCGA-AA-3956-01A-02D-1167-02	TCGA-AA-3966-01A-01D-1109-02	TCGA-AA-3968-01A-01D-1167-02	TCGA-AA-3970-01A-01D-1109-02	TCGA-AA-3994-01A-01D-1109-02	TCGA-AA-A00U-01A-01D-A077-02	TCGA-AA-A00Z-01A-01D-A077-02	TCGA-AA-A01K-01A-01D-A077-02	TCGA-AA-A01P-01A-21D-A079-02	TCGA-AA-A01R-01A-21D-A079-02	TCGA-AA-A01T-01A-21D-A079-02	TCGA-AA-A01V-01A-23D-A079-02	TCGA-AA-A02K-01A-21D-A079-02	TCGA-AA-A02O-01A-21D-A079-02	TCGA-AA-A02R-01A-01D-A077-02	TCGA-AA-A02Y-01A-43D-A079-02	TCGA-AA-A03F-01A-11D-A079-02	TCGA-AA-A03J-01A-21D-A079-02	TCGA-AY-4070-01A-01D-1109-02	TCGA-AY-4071-01A-01D-1109-02	TCGA-AZ-4308-01A-01D-1405-02	TCGA-AZ-4313-01A-01D-1405-02	TCGA-AZ-4315-01A-01D-1405-02	TCGA-AZ-4614-01A-01D-1405-02	TCGA-AZ-4615-01A-01D-1405-02	TCGA-AZ-4681-01A-01D-1405-02	TCGA-AZ-4682-01B-01D-1405-02	TCGA-AZ-4684-01A-01D-1405-02	TCGA-CA-5256-01A-01D-1405-02	TCGA-CK-4951-01A-01D-1405-02	TCGA-CM-4744-01A-01D-1405-02	TCGA-CM-4746-01A-01D-1405-02	TCGA-CM-4747-01A-01D-1405-02	TCGA-CM-4748-01A-01D-1405-02	TCGA-CM-4750-01A-01D-1405-02	TCGA-CM-4752-01A-01D-1405-02	
Amplification Peak 1	3q11.2  	chr3:90387002-95001999(probes 4137:4160)    	chr3:90449001-94998000(probes 4150:4155)    	chr3:90395113-95004999(probes 4138:4162)    	0.060697	   0.060697		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	2	0	0	1	0	0	0	1	0	2	0	1	0	0	0	0	0	1	0	2	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 2	5q31.1  	chr5:134285002-134292999(probes 7266:7279)	chr5:134287001-134291000(probes 7269:7276)	chr5:134286001-134376999(probes 7267:7281)	0.0038827	  0.0038827		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	2	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	
Amplification Peak 3	7p14.1  	chr7:38259002-38726000(probes 9119:9131)    	chr7:38260001-38725999(probes 9120:9130)    	chr7:38259001-39639000(probes 9118:9133)    	0.0034225	  0.0034225		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	0	0	1	1	1	1	0	0	1	1	1	0	0	2	1	1	0	2	0	0	2	1	0	0	2	2	2	2	0	1	0	0	2	1	1	2	1	0	0	0	0	1	0	0	1	0	2	0	1	0	2	1	1	0	0	0	1	1	1	1	0	1	0	1	0	1	2	
Amplification Peak 4	8p11.22 	chr8:38093542-38720999(probes 10546:10561)  	chr8:38258001-38524625(probes 10547:10554)  	chr8:38093541-40112010(probes 10545:10615)  	0.0023807	  0.0023807		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	0	0	0	0	0	0	0	0	0	2	0	1	0	1	1	0	0	0	2	2	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	1	0	0	0	0	2	1	2	1	0	1	0	1	1	1	0	1	0	
Amplification Peak 5	13q12.3 	chr13:18975002-33955000(probes 15657:15787)	chr13:26933001-30665000(probes 15706:15743)	chr13:26933001-30968999(probes 15706:15746)	0.18467	    0.18467		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	0	1	1	2	2	2	0	2	0	1	2	0	0	0	2	2	1	0	2	0	2	0	0	1	2	0	2	0	0	0	1	0	2	0	1	0	0	0	0	0	1	0	2	0	0	1	0	1	1	2	2	1	0	0	0	2	2	1	0	0	1	0	1	0	1	2	
Amplification Peak 6	14q11.2 	chr14:21725002-22028999(probes 16601:16618)	chr14:21846001-22008000(probes 16606:16611)	chr14:21542001-22042100(probes 16568:16632)	4.9231e-06	 4.9231e-06		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	2	0	2	0	2	2	0	2	0	1	0	2	0	2	1	2	1	2	0	2	2	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	
Amplification Peak 7	17q12   	chr17:35082002-35511330(probes 19400:19425)	chr17:35096001-35495000(probes 19401:19424)	chr17:31541002-36613999(probes 19374:19459)	4.9231e-06	 4.9231e-06		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	2	0	1	0	0	0	0	0	2	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 8	19q13.11	chr19:23976001-32820288(probes 20729:20754)	chr19:32666001-32765000(probes 20744:20747)	chr19:23976002-32845999(probes 20730:20756)	0.040955	   0.040955		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	1	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	1	0	1	0	2	0	1	0	2	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	
Amplification Peak 9	20q13.12	chr20:41531002-43781999(probes 21677:21704)	chr20:41604001-43454000(probes 21680:21699)	chr20:41597001-43787999(probes 21678:21706)	0.061642	   0.061642		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	0	1	2	1	1	2	0	1	2	2	2	1	0	1	1	2	2	0	2	1	2	0	1	2	2	2	2	0	0	0	2	1	2	2	0	1	2	1	0	0	2	0	1	1	0	1	0	2	2	2	2	0	0	2	0	2	2	1	2	0	1	2	1	0	2	2	
Deletion Peak  1	1p36.12	chr1:5019002-33293999(probes 50:259)         	chr1:16715002-26441999(probes 176:203)      	chr1:16715002-27479000(probes 176:206)      	0.076178	   0.076178		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	0	0	1	0	0	1	
Deletion Peak  2	3p14.2 	chr3:59472001-61198999(probes 3950:3968)    	chr3:59472002-61073000(probes 3951:3961)    	chr3:59472002-61159679(probes 3951:3966)    	0.089678	   0.089678		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	
Deletion Peak  3	4q22.1 	chr4:91433002-92003999(probes 5523:5566)    	chr4:91567001-91579000(probes 5536:5537)    	chr4:91477821-91696513(probes 5528:5542)    	0.036381	   0.036381		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	1	1	0	1	1	0	0	0	0	0	0	0	1	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	
Deletion Peak  4	4q35.2 	chr4:168192002-191154276(probes 6199:6385)	chr4:187556001-191154276(probes 6368:6385)	chr4:177925001-191154276(probes 6298:6385)	0.016325	   0.016325		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	1	1	1	1	0	0	1	0	0	0	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	1	0	1	0	1	1	0	0	1	0	0	0	1	1	0	0	1	0	0	0	1	1	0	0	0	0	0	0	1	
Deletion Peak  5	8p22   	chr8:1-30983845(probes 10239:10401)             	chr8:13720743-21419000(probes 10277:10320)  	chr8:1-30994999(probes 10239:10403)             	0.0091733	  0.0091733		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	1	1	1	1	1	0	1	1	1	1	0	0	1	1	1	1	0	0	1	1	0	0	1	1	1	0	0	0	0	1	0	0	1	0	1	0	1	0	0	1	0	1	0	0	0	0	1	1	0	1	0	0	1	0	1	1	0	0	0	0	0	0	0	0	1	
Deletion Peak  6	8p11.22	chr8:39099379-39516999(probes 10579:10597)  	chr8:39099380-39507158(probes 10580:10594)  	chr8:39099380-39698999(probes 10580:10599)  	0.0091733	  0.0091733		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	1	0	1	0	1	0	0	2	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	
Deletion Peak  7	15q11.1	chr15:1-24844893(probes 17411:17438)       	chr15:1-24844892(probes 17411:17437)       	chr15:1-24946000(probes 17411:17440)       	0.055614	   0.055614		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	2	0	1	1	1	0	1	1	0	0	0	0	0	1	1	1	0	0	0	1	0	0	0	1	1	1	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	1	1	0	0	0	1	0	0	1	
Deletion Peak  8	16p13.3	chr16:6491002-6589853(probes 18186:18207)    	chr16:6537001-6539000(probes 18197:18198)    	chr16:6096553-7453000(probes 18148:18228)    	6.0373e-15	 6.0373e-15		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	1	0	1	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	1	0	0	0	1	1	1	1	0	0	0	0	0	0	1	1	0	1	0	2	0	0	0	0	1	0	2	0	0	1	1	0	0	0	0	1	0	0	0	0	1	1	
Deletion Peak  9	16q23.1	chr16:77057138-77366999(probes 18838:18857)	chr16:77176284-77193000(probes 18849:18850)	chr16:77059001-77275999(probes 18839:18855)	0.02841	    0.02841		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	1	1	0	0	1	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 10	17p12  	chr17:10790001-11970794(probes 19099:19107)	chr17:10790002-11856735(probes 19100:19106)	chr17:10790002-12049999(probes 19100:19109)	0.096544	   0.096544		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	1	0	1	1	1	1	1	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	1	1	0	0	0	1	0	2	1	0	1	1	1	0	0	1	0	1	0	0	0	0	1	0	0	1	0	0	1	0	1	1	1	1	0	0	0	1	0	1	1	
Amplification Peak 1 - CN values	3q11.2  	chr3:90387002-95001999(probes 4137:4160)    	chr3:90449001-94998000(probes 4150:4155)    	chr3:90395113-95004999(probes 4138:4162)    	0.060697	   0.060697		Actual Copy Change Given	0.051925	-0.10642	-0.037924	-0.16823	-0.036788	-0.053362	-0.055229	0.61444	0.0073652	-0.01609	0	-0.00013862	-0.1083	0.010159	0.37002	0.0076646	-0.14541	0.019391	-0.016841	0	-0.047636	0.25899	0.4946	-0.012024	-0.0068362	1.7165	-0.0081807	-0.098418	0.43294	-0.021235	0.081033	-0.059857	0.72306	-0.27081	1.0352	-0.026577	0.3206	0.050726	-0.010508	0.0026721	-0.017529	0	0.48412	-0.51704	4.212	-0.047801	-1.1516	0.38178	-0.021372	-0.020001	-0.12201	0.27698	0.0012124	0.0058309	-0.0018472	0.86482	-0.0049427	0.0080567	0.0086135	0	-0.084395	0.0027563	-0.0033243	0.026373	0.013911	0.0090312	0	-0.26276	
Amplification Peak 2 - CN values	5q31.1  	chr5:134285002-134292999(probes 7266:7279)	chr5:134287001-134291000(probes 7269:7276)	chr5:134286001-134376999(probes 7267:7281)	0.0038827	  0.0038827		Actual Copy Change Given	0.58073	0.42959	0.031018	0.13329	0.31276	0.082002	0.083105	0.75622	0.0025012	0.25195	-0.46045	0.049187	0.069072	0.015311	-0.047395	0.0032274	0.11653	-0.031713	2.1273	-0.0016762	0.00073059	0.0039166	0.18024	-0.0088526	-0.0050955	0	-0.42985	-0.0078472	0.034395	0.34665	2.2548	0.058221	0.12371	-0.20386	1.9001	0.0044641	0.77801	-0.52627	-0.026851	0.071283	-0.03206	-0.0067637	-0.36902	-0.0055548	0.56166	0.039761	0.023009	0.24831	0.026918	-0.020941	-0.21202	3.7545	0.071865	0.0058309	0.009561	-0.80721	-0.0048044	-0.82191	0.054022	-0.18207	0	0.033084	0.0086135	0.022833	0.88226	0.13929	0.094567	-0.29524	
Amplification Peak 3 - CN values	7p14.1  	chr7:38259002-38726000(probes 9119:9131)    	chr7:38260001-38725999(probes 9120:9130)    	chr7:38259001-39639000(probes 9118:9133)    	0.0034225	  0.0034225		Actual Copy Change Given	0.76691	-0.3012	-0.0028459	0.75498	0.71904	0.53309	0.49303	0.12758	0.014334	0.78987	0.52801	0.56792	-0.039008	0.016952	2.4055	0.60272	0.42202	0.028683	1.7453	0.0015261	0.032139	1.5239	0.78938	0.026423	0.022266	1.2346	2.5065	1.2167	2.0264	0.022106	0.46195	0.08142	0.11479	1.4622	0.59899	0.62115	2.7621	0.89691	-0.017803	0.076072	0	0.0025803	0.53161	-0.0019803	0.27288	0.81884	0.030432	2.6869	-0.0087314	0.33593	0.25385	0.93401	0.74155	0.50481	0.012496	-0.00291	0.024871	0.84356	0.741	0.61589	0.41011	0.0044262	0.43868	0.024689	0.4801	0.0087528	0.73739	1.1257	
Amplification Peak 4 - CN values	8p11.22 	chr8:38093542-38720999(probes 10546:10561)  	chr8:38258001-38524625(probes 10547:10554)  	chr8:38093541-40112010(probes 10545:10615)  	0.0023807	  0.0023807		Actual Copy Change Given	-0.71294	0.4526	-0.01993	-0.54991	-0.43072	-0.67223	0.16206	-0.79936	0.0037508	0.21653	-1.069	1.6729	0.059913	0.82038	0.1682	0.51547	0.51176	-0.68711	-0.46259	-0.0031946	0.93054	0.9094	-0.91312	-0.0036011	0.0035108	0.31892	2.5149	-0.79853	-0.037626	0.27887	0.073546	0.048054	-0.5211	0.12623	0.046861	0.0038854	0.050677	-0.95396	0.083972	-0.47809	-0.0078656	-0.01758	-0.33806	0.2881	2.684	0.84751	0.008234	0.067148	0.051655	0	0.79237	-0.0081624	-0.65371	-0.0067813	0	1.8294	0.8485	6	0.46809	-0.19925	0.50654	-0.0037543	0.41831	0.78273	0.37578	0.0075	0.6308	0	
Amplification Peak 5 - CN values	13q12.3 	chr13:18975002-33955000(probes 15657:15787)	chr13:26933001-30665000(probes 15706:15743)	chr13:26933001-30968999(probes 15706:15746)	0.18467	    0.18467		Actual Copy Change Given	0.94196	-0.63376	0.038287	0.66509	0.62825	1.9351	1.1967	0.95181	-0.001797	1.683	0.061365	0.49701	2.4737	0.026175	0.012934	0	3.2712	2.9059	0.48475	-0.0039964	0.9555	-0.074996	2.3704	-0.026167	-0.01326	0.86132	1.0247	0.0051359	1.7847	0.11052	0.016705	-0.049342	0.52123	0.15801	1.1353	-0.022606	0.7683	-0.29091	-0.025483	0.041274	-0.021784	0.0068893	0.52598	-0.29961	1.4702	-0.00069303	0.048082	0.72252	0.015608	0.57434	0.71921	1.129	1.2874	0.52188	0.0034461	-0.0082784	-0.020371	2.5654	1.477	0.66623	0.0015255	-0.0047226	0.45292	0.084065	0.71754	0.014609	0.76421	1.2734	
Amplification Peak 6 - CN values	14q11.2 	chr14:21725002-22028999(probes 16601:16618)	chr14:21846001-22008000(probes 16606:16611)	chr14:21542001-22042100(probes 16568:16632)	4.9231e-06	 4.9231e-06		Actual Copy Change Given	-0.49905	-0.48368	0.051066	-0.20555	0.19785	-0.12515	0.30655	-0.07921	-0.038574	-0.39441	-0.0022168	-0.0024938	0.049801	-0.0052847	2.6758	-0.0015406	3.7797	-0.013771	1.5613	0.0078212	1.1755	1.2819	0.2604	0.94486	0.012448	0.50578	-0.32542	1.2802	-0.17069	1.4742	0.79684	1.0627	0.87035	2.3578	-0.22092	0.99156	1.7599	-0.11893	-0.37796	0.21691	-0.0030475	0.0056882	-0.77197	0.0063354	-0.42249	0.72678	-0.0030938	1.5994	-0.012317	-0.38123	-0.038593	-0.13238	-0.43507	-0.021784	0.0018273	-0.15833	0.010327	-0.0047079	-0.22515	0.032986	-0.1445	0.0037317	-0.020275	0.32144	-0.29089	0.010285	0.11286	0.01419	
Amplification Peak 7 - CN values	17q12   	chr17:35082002-35511330(probes 19400:19425)	chr17:35096001-35495000(probes 19401:19424)	chr17:31541002-36613999(probes 19374:19459)	4.9231e-06	 4.9231e-06		Actual Copy Change Given	-0.27514	-0.026696	0.064704	0.19078	-0.11051	-0.031496	-0.29794	-0.040098	-0.60447	0.079303	0.49234	0.58901	0.097519	-0.027761	0.28279	1.199	0.21131	-0.31313	0.37035	0.0065518	-0.04323	0.059358	-0.31437	0.059196	0.015593	-0.28269	0.12358	0.30697	0.097688	0.035806	0.11345	0.10253	0.5193	0.24373	0.026654	0.72349	6	-0.11067	0.65701	-0.031308	0.065032	0.03344	-0.32266	-0.20542	2.5783	6	-0.049185	0.048179	0.034942	0.029888	6	0	-0.12005	-0.047395	-0.010655	0.073138	-0.0073237	0	-0.10395	-0.11548	0.051672	-0.019192	-0.096836	-0.084528	-0.03504	-0.018902	0.23026	0.21361	
Amplification Peak 8 - CN values	19q13.11	chr19:23976001-32820288(probes 20729:20754)	chr19:32666001-32765000(probes 20744:20747)	chr19:23976002-32845999(probes 20730:20756)	0.040955	   0.040955		Actual Copy Change Given	-0.019482	0.0061278	-0.16089	-0.028434	-0.1092	0.32977	0.33821	1.2578	-0.018349	0.48113	-0.04048	-0.018216	-0.068551	-0.0078709	-0.0029091	-0.041897	0.0029133	0.041398	-0.041838	-0.0073359	-0.046177	-0.12679	0.03384	0.078871	0.4635	1.8364	0.047552	-0.31704	-0.067018	0.04741	0.59103	0.24972	0.62429	-0.29	1.5685	0.08551	0.55496	-0.27063	1.8218	-1.0361	-0.014778	0.011765	-0.31394	0.011278	2.6882	0.80811	-0.93096	0.27291	0.045265	0.021603	-0.016307	-0.0076101	0.00082337	-0.074144	-0.016721	0.0090535	-0.02968	-0.074945	-0.11783	-0.26997	0.021183	-0.034237	-0.0084385	0.56796	0.40861	-0.027398	-0.17575	0.10293	
Amplification Peak 9 - CN values	20q13.12	chr20:41531002-43781999(probes 21677:21704)	chr20:41604001-43454000(probes 21680:21699)	chr20:41597001-43787999(probes 21678:21706)	0.061642	   0.061642		Actual Copy Change Given	1.4314	-0.16025	-0.016444	0.32453	1.6845	0.89126	0.87308	1.0124	0.0034731	0.86811	3.1383	2.775	0.93464	0.79555	0.16115	0.56721	0.51875	1.0647	2.9324	-0.0090622	0.91218	0.81848	1.5543	0.02525	0.81371	1.7903	2.1557	0.91582	2.2501	0.022589	0.090211	0.11816	1.123	0.5062	1.7319	2.0217	0.083442	0.78972	1.2447	0.57535	0.028358	-0.0013682	1.9534	-0.10118	0.82961	0.83089	-5.6901e-05	0.76167	0.020606	2.5859	1.3647	2.5394	2.2687	-0.033677	-0.011279	6	0.039097	1.6533	1.2396	0.60738	1.361	-0.0058287	0.36199	1.407	0.84021	-0.0077482	2.2584	1.4926	
Deletion Peak  1 - CN values	1p36.12	chr1:5019002-33293999(probes 50:259)         	chr1:16715002-26441999(probes 176:203)      	chr1:16715002-27479000(probes 176:206)      	0.076178	   0.076178		Actual Copy Change Given	0	0.51806	0.022074	0.2028	-0.37268	-0.54301	-0.2673	-0.90604	0	0.024784	-0.032195	-0.00057853	-0.72325	-0.0077175	0.1862	-0.036202	0.16098	0.055217	-0.48523	0.0036574	-0.0044909	0.038748	-0.29779	0.057233	0	-0.30509	-0.33052	-0.77235	0.012757	0.043022	0.10935	0.14551	-0.0058624	-0.16472	-0.52215	0.06096	0.054376	0.12551	0.022164	-0.52718	0.010375	0.015431	-0.31602	0.0089653	-0.24142	0.031718	-0.069079	0.027181	0	-0.34498	-0.2211	-0.016501	-0.1202	-0.056998	0.0016204	-0.094934	0	0.026668	-0.9308	-0.64294	-0.37245	-0.0060141	-0.096176	-0.076012	-0.51841	-0.00061948	-0.1796	-0.43083	
Deletion Peak  2 - CN values	3p14.2 	chr3:59472001-61198999(probes 3950:3968)    	chr3:59472002-61073000(probes 3951:3961)    	chr3:59472002-61159679(probes 3951:3966)    	0.089678	   0.089678		Actual Copy Change Given	0.10815	0.017503	-0.037924	-0.021178	-0.023429	0.00148	-0.15142	-0.48484	0.0073652	-0.80931	-0.039258	-0.00013862	0	0.010159	-0.57625	-0.017765	-0.010922	0.019391	-0.040752	0	-0.047636	-0.89755	0.061132	-0.59847	-0.0068362	-0.37247	-0.0081807	-0.098418	0.51856	-0.66993	-0.075345	0.052545	0.039095	-0.27834	-0.32582	0	-0.040345	0.12492	-0.010508	-0.46745	-0.078414	0	0.094994	0.30091	-0.3747	-0.037354	0.032002	-0.024683	-0.021372	-0.0012473	-0.07309	0.34372	-0.63036	0.0058309	-0.0018472	-0.83679	-0.0049427	0.0080567	0.0086135	-0.0053992	-0.084395	0.0027563	-0.0033243	-0.0084385	-0.013953	0.0090312	-0.69142	-0.034711	
Deletion Peak  3 - CN values	4q22.1 	chr4:91433002-92003999(probes 5523:5566)    	chr4:91567001-91579000(probes 5536:5537)    	chr4:91477821-91696513(probes 5528:5542)    	0.036381	   0.036381		Actual Copy Change Given	0.025879	0.083362	0.048995	-0.73815	-0.37763	-0.43823	0.21418	-1.0219	-0.57871	-0.21775	0.0033299	-0.00063123	-0.067212	0	-0.03245	-0.0029494	-0.71746	-1.3942	0	0.0060915	-0.0042929	-0.0076305	-0.5425	-0.0099312	-0.0031708	-0.29908	0	-0.14271	0.77195	0.0081453	-0.080541	-0.10024	-0.25717	-0.26107	-0.40473	-0.63822	-0.34824	-0.15293	0.016025	0.011876	-0.030267	-0.00072395	0.05156	-0.0038861	0.11024	-0.045395	-0.0033875	-0.13401	-0.040747	-0.39953	-0.24017	-0.45354	0.060928	0.010006	0.017502	0.54209	-0.012672	0.0034687	0.027638	-0.59284	-0.40097	0.013198	-0.45661	0.034328	0.012516	0.0058309	-0.22797	-0.31704	
Deletion Peak  4 - CN values	4q35.2 	chr4:168192002-191154276(probes 6199:6385)	chr4:187556001-191154276(probes 6368:6385)	chr4:177925001-191154276(probes 6298:6385)	0.016325	   0.016325		Actual Copy Change Given	-0.0012782	0.26889	0.049583	-0.019177	-0.11355	-0.46128	-0.54716	-0.60309	-0.57871	-0.77592	-0.01044	-0.0008316	-0.80172	0.028389	-0.086079	0.018918	-0.51681	-0.58297	0	0.0060915	0.021082	-0.86803	-0.56319	-0.0099312	-0.0031708	-0.29908	-0.0092666	-0.15452	0.79239	-0.03095	-0.0080244	-0.036397	-0.5701	-0.27894	-0.52054	-0.63822	-0.021907	-0.18016	-0.062277	-0.43558	-0.030267	-0.66426	0.016191	-0.5341	-0.50133	0.0011093	-0.0033875	-0.6181	-0.040747	-0.024935	-0.24017	-0.45354	-0.69876	0.02302	0.017502	-0.66321	-0.012672	-0.14335	-0.037489	-0.59284	-0.40097	-0.045457	0.029777	0.023804	0.003202	0.0058309	-0.22857	-0.42602	
Deletion Peak  5 - CN values	8p22   	chr8:1-30983845(probes 10239:10401)             	chr8:13720743-21419000(probes 10277:10320)  	chr8:1-30994999(probes 10239:10403)             	0.0091733	  0.0091733		Actual Copy Change Given	-1.1908	0.12714	-0.024132	-0.62642	-0.43072	-0.67223	-0.59507	-0.70235	0.0037508	-0.55637	-1.069	-0.59068	-0.81334	0.82038	-0.016331	-0.60394	-0.72101	-0.71593	-0.48208	-0.0031946	0.76104	-0.87094	-0.99037	-0.0036011	0.0035108	-0.80763	-0.85202	-0.83607	-0.037626	0.22314	0.0049969	0.027407	-0.5211	0.15308	0.066681	-0.63916	-0.012989	-0.64209	0.083972	-0.47809	-0.0078656	-0.01758	-1.2122	-0.011307	-0.87	0.80753	0.008234	-0.0076907	0.051655	-0.37437	-0.47903	-0.0081624	-0.6739	-0.0067813	0	-0.83072	0.69116	-0.88	-0.81308	-0.27057	0.50654	-0.0037543	0.41831	0.78273	-0.059269	0.0075	0.55018	-0.70361	
Deletion Peak  6 - CN values	8p11.22	chr8:39099379-39516999(probes 10579:10597)  	chr8:39099380-39507158(probes 10580:10594)  	chr8:39099380-39698999(probes 10580:10599)  	0.0091733	  0.0091733		Actual Copy Change Given	1.9244	-0.063551	-0.01993	-1.1461	0.45071	-0.67223	0.16206	-0.68879	0.0037508	0.21653	-1.5	1.6729	0.059913	0.0049572	-0.034086	-1.1534	0.14786	-0.68711	-0.26443	-0.0031946	0.7196	0.9094	-0.45613	-0.0036011	0.0035108	0.2571	3.034	0.041175	-0.037626	0.27887	0.073546	0.048054	-0.49396	0.12623	0.046861	0.0038854	0.050677	-0.95396	1.0831	-0.47809	-0.0078656	-0.01758	-0.33806	0.2881	-0.54138	0.74088	0.008234	0.067148	0.051655	0	0.010548	-0.0081624	-0.65371	-0.0067813	0	1.0499	0.754	4.4998	0.46809	-0.39544	0.50654	-0.0037543	0.41831	0.78273	0.37578	0.0075	0.47272	0	
Deletion Peak  7 - CN values	15q11.1	chr15:1-24844893(probes 17411:17438)       	chr15:1-24844892(probes 17411:17437)       	chr15:1-24946000(probes 17411:17440)       	0.055614	   0.055614		Actual Copy Change Given	0.049191	0.28915	-0.12767	-1.3163	-0.075665	-0.69033	-0.84082	-0.93115	-0.0026279	-0.39196	-0.55196	-0.0027707	0.62052	-0.01411	-0.022744	-0.020495	-1.1297	-0.6937	-0.35373	-0.00014659	-0.075345	0.025618	-0.42222	0.01146	0.023875	-0.28566	-0.37583	-0.37166	-0.61383	0	-0.10749	-0.040541	-0.0010686	-0.25116	-0.57437	0.024408	-0.023155	-0.77619	-0.081073	-0.21071	0.019223	-0.077409	-0.76009	0.010008	0.33649	-0.035585	0.014374	0	0.00012173	0.013632	-0.51229	-0.3424	-0.052509	-0.1246	-0.0065798	0.16118	0.027118	-0.49569	-0.093403	-0.41531	-0.56027	0.0063723	-0.074811	-0.053746	-0.89939	-0.015741	-0.044686	-0.38302	
Deletion Peak  8 - CN values	16p13.3	chr16:6491002-6589853(probes 18186:18207)    	chr16:6537001-6539000(probes 18197:18198)    	chr16:6096553-7453000(probes 18148:18228)    	6.0373e-15	 6.0373e-15		Actual Copy Change Given	0.18195	0.42976	-0.77501	0.057713	-0.98217	0.32021	-0.83422	-1.5	-0.013398	-0.83809	-0.03286	-0.014228	0.045117	-0.0065551	-0.03245	-0.02993	0.12756	0.033376	0.39894	-0.014037	0.058652	-1.0006	-0.45525	0.012638	0.034111	-0.84818	-0.31213	0.028341	0.035806	-0.002227	-0.67104	-0.32109	-0.98186	-0.9604	0	0.065799	0.070099	0.12212	0.064225	-0.0019706	-0.83405	-0.68222	0.95197	-0.83317	0.13408	-1.5	-0.10776	0.79906	0.10073	0.29088	-0.98363	0.37545	-1.3722	-0.056173	-0.02583	-1.1322	-0.76018	-0.038986	-0.17489	-0.0031859	0.0416	-0.66486	0.33194	-0.056038	-0.051856	-0.022195	-0.3112	-0.41982	
Deletion Peak  9 - CN values	16q23.1	chr16:77057138-77366999(probes 18838:18857)	chr16:77176284-77193000(probes 18849:18850)	chr16:77059001-77275999(probes 18839:18855)	0.02841	    0.02841		Actual Copy Change Given	-0.57024	-0.0038592	-1.0006	-0.59376	0.30234	0.35916	-0.65929	0.81181	-0.013398	0.033549	-0.54633	-0.014228	0.048948	-0.0065551	-0.67564	-0.023693	0.10162	-0.72974	0.422	-0.014037	0.058652	-0.22572	-0.035992	-0.76809	0.034111	-0.28598	0.3499	0.022444	0.01447	-0.075316	0.10089	0.10646	0.28347	-0.60574	-0.57209	0.022164	0.010146	0.075454	-0.003509	-0.0019706	-0.4317	-0.016598	0.081709	-0.12392	-0.14921	0.034818	-0.70416	0.041863	0.013196	0.35749	-0.12578	0.37068	-0.057815	-0.048347	-0.14531	-0.15369	-0.31594	-0.038986	-0.080541	-0.068797	0.022865	-0.010799	-0.059942	-0.032996	-0.035312	-0.022195	0.18086	-0.058596	
Deletion Peak 10 - CN values	17p12  	chr17:10790001-11970794(probes 19099:19107)	chr17:10790002-11856735(probes 19100:19106)	chr17:10790002-12049999(probes 19100:19109)	0.096544	   0.096544		Actual Copy Change Given	-0.35638	0.27161	0.025564	-0.78796	-0.11051	-0.52009	-0.60429	-0.73459	-0.64987	-0.42549	-0.56883	-0.60138	-0.77856	-0.81032	0.045991	-0.0399	-0.74968	-1.0824	-0.4806	0.0065518	-0.04323	-0.14423	-0.35496	0.059196	0.015593	-0.28269	-0.84396	-0.78243	-0.88116	0.035806	-0.088374	0.068955	-0.55534	0.07484	-1.5	-0.5727	0.060936	-0.84973	-0.66912	-0.54881	0.048546	0.03344	-0.32266	0.021802	-0.50952	-0.020412	-0.049185	0.02587	0.034942	-0.3551	-0.24047	-0.20386	-0.71007	-0.047395	-0.010655	-0.82699	-0.0073237	-0.88565	-0.82847	-0.62798	-0.80236	-0.019192	-0.096836	-0.080249	-0.48712	-0.018902	-0.70316	-0.40539	
