		Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(2q33.1)	0 (0%)	344	0.1662	1	0.03648	1	0.0016499	0.848	0.053973	1	0.053959	1	0.065226	1	0.014146	1	0.033887	1	0.22359	1	0.099021	1	0.19138	1	0.34269	1
Amp Peak  2(5p13.2)	0 (0%)	344	0.37964	1	0.26756	1	2.9315e-05	0.0183	0.595	1	0.0059496	1	0.72358	1	0.034271	1	0.0018214	0.934	0.78782	1	0.10104	1	0.047819	1	0.50732	1
Amp Peak  3(5q22.3)	0 (0%)	386	0.91546	1	0.67706	1	0.0087257	1	0.79842	1	0.38469	1	0.49402	1	0.15194	1	0.0105	1	0.90186	1	1	1	0.15302	1	0.41735	1
Amp Peak  4(6p21.1)	0 (0%)	335	0.19559	1	0.00019134	0.113	8.9435e-10	6.03e-07	0.037415	1	0.50519	1	0.17797	1	0.022631	1	0.00042596	0.241	0.85841	1	0.16528	1	0.0014854	0.771	0.70517	1
Amp Peak  5(8p11.23)	0 (0%)	277	0.30155	1	0.12557	1	3.1251e-25	2.33e-22	0.52176	1	0.65215	1	0.73292	1	0.49141	1	0.17906	1	0.28776	1	0.36641	1	0.31875	1	0.97818	1
Amp Peak  6(8p11.21)	0 (0%)	248	0.44438	1	0.071551	1	3.212e-19	2.36e-16	0.38589	1	0.15189	1	0.0067242	1	0.54057	1	0.12387	1	0.63472	1	0.50252	1	0.26932	1	0.65832	1
Amp Peak  7(8q12.1)	0 (0%)	206	0.48918	1	0.03894	1	2.4134e-20	1.78e-17	0.0029872	1	0.0058962	1	0.00068034	0.373	0.012717	1	0.005175	1	0.37789	1	0.6392	1	0.00057624	0.318	0.073573	1
Amp Peak  8(8q24.21)	0 (0%)	181	0.56255	1	0.068545	1	7.4214e-21	5.51e-18	0.00033879	0.193	0.029401	1	0.010384	1	0.0054993	1	0.012384	1	0.77052	1	0.40277	1	0.00085388	0.46	0.053491	1
Amp Peak  9(11p15.5)	0 (0%)	338	6.0906e-06	0.0039	0.00034266	0.195	9.3466e-06	0.00594	8.7634e-06	0.00558	0.0027971	1	0.0035797	1	0.0018614	0.953	0.00046053	0.258	0.18215	1	7.6223e-05	0.0463	0.0015694	0.81	1.9976e-05	0.0126
Amp Peak 10(12p13.33)	0 (0%)	323	0.5373	1	0.80075	1	0.00017616	0.104	0.2346	1	0.42598	1	0.95827	1	0.34278	1	0.92478	1	0.50286	1	0.82738	1	0.67708	1	0.55258	1
Amp Peak 11(13q12.13)	0 (0%)	167	1.577e-06	0.00103	2.0686e-06	0.00134	3.212e-32	2.4e-29	1.4101e-05	0.00891	0.0049119	1	0.012395	1	1.0716e-06	7e-04	2.7458e-09	1.85e-06	0.56276	1	0.018109	1	2.8289e-07	0.000188	0.69203	1
Amp Peak 12(13q22.1)	0 (0%)	163	0.00058589	0.323	4.414e-05	0.0273	7.9922e-31	5.97e-28	8.2809e-06	0.00529	0.014763	1	0.044448	1	1.3089e-06	0.000853	2.8733e-08	1.92e-05	0.44973	1	0.033169	1	4.3318e-06	0.00279	0.97842	1
Amp Peak 13(16p11.2)	0 (0%)	310	0.0011376	0.597	0.00012925	0.0774	1.4379e-19	1.06e-16	0.021965	1	0.021844	1	0.033031	1	0.0010138	0.534	0.00025576	0.148	0.93273	1	0.0025721	1	0.00048759	0.272	0.42646	1
Amp Peak 14(16q12.1)	0 (0%)	324	0.00012622	0.0757	2.5321e-05	0.0159	1.5199e-20	1.12e-17	0.049905	1	0.082016	1	0.081003	1	0.00047884	0.268	3.6924e-05	0.0229	0.96278	1	0.00019149	0.113	0.00015452	0.0919	0.24073	1
Amp Peak 15(17q12)	0 (0%)	323	0.053798	1	0.074958	1	4.154e-08	2.77e-05	0.00051749	0.287	0.13126	1	0.002762	1	0.00079012	0.427	0.0032309	1	0.037591	1	0.17584	1	0.028226	1	0.28671	1
Amp Peak 16(17q24.1)	0 (0%)	332	0.050372	1	0.026313	1	3.3921e-10	2.31e-07	0.00034115	0.194	0.057919	1	0.0052735	1	0.00055107	0.305	0.00030631	0.175	0.0091629	1	0.21329	1	0.034465	1	0.14661	1
Amp Peak 17(19p13.2)	0 (0%)	359	0.067369	1	0.026322	1	0.00070651	0.386	0.053293	1	0.69702	1	0.34131	1	0.34444	1	0.1238	1	0.36433	1	0.018033	1	0.016993	1	0.33461	1
Amp Peak 18(19q13.11)	0 (0%)	342	0.18149	1	0.023215	1	0.0040877	1	0.16089	1	0.054455	1	0.68839	1	0.084064	1	0.012241	1	0.46639	1	0.097054	1	0.048104	1	0.26967	1
Amp Peak 19(20p11.23)	0 (0%)	219	0.093267	1	0.00072535	0.396	9.0149e-11	6.18e-08	0.07668	1	0.005945	1	0.18646	1	0.0002459	0.142	0.000272	0.157	0.45257	1	0.084633	1	0.0019845	1	0.97951	1
Amp Peak 20(20q11.21)	0 (0%)	121	3.8669e-10	2.63e-07	7.2759e-12	5.1e-09	5.0588e-42	3.8e-39	1.9088e-12	1.35e-09	0.00072959	0.398	0.0001082	0.0652	2.4017e-15	1.74e-12	3.4135e-17	2.49e-14	0.82122	1	0.00010282	0.0621	2.1757e-12	1.53e-09	0.14253	1
Amp Peak 21(20q12)	0 (0%)	120	4.2898e-11	2.97e-08	4.9875e-12	3.51e-09	1.7404e-41	1.31e-38	1.6818e-11	1.17e-08	0.00051213	0.285	2.1772e-05	0.0137	3.8776e-14	2.79e-11	2.598e-16	1.89e-13	0.77421	1	0.00012497	0.0751	1.9449e-13	1.38e-10	0.14044	1
Amp Peak 22(20q13.12)	0 (0%)	117	3.8669e-10	2.63e-07	7.2759e-12	5.1e-09	3.6289e-41	2.72e-38	3.7239e-11	2.58e-08	0.00023726	0.138	1.2964e-05	0.00821	1.6157e-13	1.15e-10	1.2741e-15	9.26e-13	0.78973	1	0.00028029	0.161	5.8419e-13	4.13e-10	0.16252	1
Del Peak  1(1p36.11)	0 (0%)	275	0.0001499	0.0893	0.0024656	1	1.8241e-13	1.3e-10	6.0751e-05	0.0373	0.0056678	1	0.023791	1	3.9826e-05	0.0247	3.2897e-05	0.0205	0.45046	1	0.016992	1	0.0001564	0.0929	0.0027889	1
Del Peak  2(1p33)	0 (0%)	319	0.022296	1	0.37616	1	1.1224e-08	7.54e-06	0.0014144	0.737	0.45492	1	0.39484	1	0.011208	1	0.0047695	1	0.60079	1	0.0015373	0.795	0.0064173	1	0.00095487	0.509
Del Peak  3(2q37.2)	0 (0%)	406	0.80481	1	0.06518	1	0.65577	1	0.28827	1	0.36673	1	0.20827	1	0.94394	1	0.1674	1	0.24498	1	0.3595	1	1	1	0.78723	1
Del Peak  4(3p26.1)	0 (0%)	365	0.39928	1	0.28114	1	4.0518e-05	0.0251	0.093702	1	0.85203	1	0.86062	1	0.19919	1	0.012701	1	0.68558	1	0.10523	1	0.0015109	0.783	0.55826	1
Del Peak  5(3p14.2)	0 (0%)	349	0.55416	1	0.5557	1	0.0079839	1	0.41752	1	0.63089	1	0.28971	1	0.23632	1	0.02545	1	0.45639	1	0.76139	1	0.0053308	1	0.64536	1
Del Peak  6(3q26.31)	0 (0%)	385	0.55869	1	0.6459	1	0.005542	1	0.24565	1	0.49718	1	0.36887	1	0.11317	1	0.23983	1	0.31961	1	0.56934	1	0.0096767	1	0.018678	1
Del Peak  7(4p16.1)	0 (0%)	301	0.00073261	0.399	0.0039661	1	1.1052e-12	7.8e-10	0.002336	1	0.02217	1	0.086565	1	3.1723e-06	0.00205	2.5604e-07	0.00017	0.38144	1	0.054167	1	0.00022943	0.134	0.51069	1
Del Peak  8(4q22.1)	0 (0%)	295	0.00038307	0.218	0.0021429	1	1.3784e-13	9.83e-11	0.00021239	0.124	0.071993	1	0.3912	1	3.9145e-06	0.00252	7.2092e-07	0.000472	0.45532	1	0.012861	1	0.00098366	0.521	0.31294	1
Del Peak  9(4q35.1)	0 (0%)	285	0.00098011	0.52	0.0036347	1	3.7396e-15	2.71e-12	1.2806e-05	0.00812	0.01462	1	0.14569	1	1.5033e-05	0.00949	2.0489e-05	0.0129	0.35088	1	0.028636	1	5.9287e-06	0.00381	0.6402	1
Del Peak 10(5q11.2)	0 (0%)	333	0.0011455	0.6	0.0012669	0.663	8.1713e-10	5.52e-07	0.023082	1	0.00085547	0.46	0.011758	1	4.767e-05	0.0294	7.0931e-05	0.0433	0.59353	1	0.36636	1	0.00027288	0.157	0.51056	1
Del Peak 11(5q21.3)	0 (0%)	307	0.066081	1	0.010456	1	2.2702e-11	1.58e-08	0.0094353	1	0.032927	1	0.097134	1	0.001472	0.765	0.00087002	0.466	0.93273	1	0.71828	1	0.028198	1	0.14986	1
Del Peak 12(5q23.1)	0 (0%)	317	0.049729	1	0.024219	1	7.913e-11	5.46e-08	0.02337	1	0.0089538	1	0.15032	1	0.00023063	0.134	9.5916e-05	0.058	0.87344	1	0.79166	1	0.0038576	1	0.2684	1
Del Peak 13(6p25.3)	0 (0%)	373	0.85206	1	0.75574	1	0.021095	1	0.077236	1	0.059517	1	0.82828	1	0.66566	1	0.36981	1	0.74623	1	0.45018	1	0.11773	1	0.5844	1
Del Peak 14(6q26)	0 (0%)	367	0.52444	1	0.25765	1	0.2272	1	0.37974	1	0.14028	1	0.35544	1	0.65469	1	0.72646	1	0.71546	1	0.10618	1	0.32064	1	0.42266	1
Del Peak 15(7q31.1)	0 (0%)	416	1	1	0.50446	1	0.36612	1	0.79722	1	0.27795	1	0.21886	1	0.51043	1	0.13107	1	0.92307	1	0.61883	1	0.87708	1	0.83701	1
Del Peak 16(8p23.3)	0 (0%)	251	0.0114	1	6.7612e-05	0.0414	6.5167e-21	4.84e-18	3.2073e-07	0.000212	0.0045305	1	0.00096002	0.511	0.00053359	0.296	2.7188e-06	0.00176	0.21834	1	0.15188	1	2.1463e-07	0.000143	0.33116	1
Del Peak 17(8p22)	0 (0%)	237	0.0026359	1	0.00017392	0.103	2.7831e-26	2.08e-23	4.1286e-08	2.76e-05	0.0079918	1	0.00013004	0.0778	5.2354e-05	0.0323	3.4143e-06	0.00221	0.48541	1	0.29814	1	3.3394e-07	0.000221	0.38566	1
Del Peak 18(8p11.22)	0 (0%)	344	0.40242	1	0.13666	1	6.2555e-10	4.25e-07	0.038434	1	0.013947	1	0.0053364	1	0.077949	1	0.0066236	1	0.81353	1	0.14776	1	0.015078	1	0.048096	1
Del Peak 19(8p11.21)	0 (0%)	383	0.025124	1	0.35468	1	6.2605e-07	0.000411	0.60396	1	0.051544	1	0.023976	1	0.34226	1	0.018799	1	0.34282	1	0.17366	1	0.084419	1	0.28711	1
Del Peak 20(9p21.3)	0 (0%)	370	0.56319	1	0.092338	1	0.00049531	0.276	0.17826	1	0.69037	1	0.21374	1	0.15474	1	0.15193	1	0.72658	1	0.68491	1	0.071418	1	0.68385	1
Del Peak 21(10p15.3)	0 (0%)	358	0.11537	1	0.10212	1	1.051e-06	0.000687	0.012959	1	0.02422	1	0.10361	1	0.067372	1	0.0073463	1	0.63006	1	0.005466	1	0.0053308	1	0.35468	1
Del Peak 22(10q21.1)	0 (0%)	343	0.0033499	1	0.0088778	1	7.5454e-10	5.11e-07	0.083382	1	0.037111	1	0.1442	1	0.077949	1	0.044655	1	0.97078	1	0.1578	1	0.0070509	1	0.74525	1
Del Peak 23(10q23.31)	0 (0%)	330	0.14631	1	0.030629	1	1.6792e-07	0.000112	0.06491	1	0.093035	1	0.37531	1	0.013712	1	0.10869	1	0.74457	1	0.025399	1	0.00077426	0.42	0.45267	1
Del Peak 24(10q25.2)	0 (0%)	332	0.12516	1	0.0018686	0.955	8.8917e-11	6.11e-08	0.0049848	1	0.0033742	1	0.31933	1	0.00098217	0.521	0.00092245	0.493	0.92196	1	0.10444	1	1.274e-05	0.00809	0.80632	1
Del Peak 25(13q14.13)	0 (0%)	409	0.27462	1	0.87599	1	0.16614	1	0.17954	1	0.23951	1	0.33969	1	0.21081	1	1	1	0.68792	1	0.90489	1	0.6324	1	0.78723	1
Del Peak 26(14q32.11)	0 (0%)	292	1.5759e-06	0.00103	3.2345e-05	0.0202	1.6725e-21	1.24e-18	0.00029353	0.168	0.00019928	0.117	0.023608	1	0.00075688	0.411	7.3841e-05	0.045	0.16401	1	0.00016977	0.101	6.7787e-05	0.0415	0.14066	1
Del Peak 27(15q11.2)	0 (0%)	264	0.00046819	0.262	0.0015862	0.817	8.0746e-21	5.98e-18	0.0044229	1	0.041495	1	0.070002	1	5.0996e-06	0.00328	6.058e-07	0.000399	0.99008	1	0.0039433	1	5.7652e-05	0.0355	0.91683	1
Del Peak 28(15q21.1)	0 (0%)	274	0.026089	1	0.014205	1	3.0627e-17	2.24e-14	0.0042392	1	0.0095886	1	0.065717	1	1.5602e-05	0.00983	6.8088e-07	0.000447	0.81518	1	0.0021928	1	0.00042812	0.241	0.95533	1
Del Peak 29(15q22.33)	0 (0%)	279	0.00027283	0.157	0.00083457	0.451	8.8931e-20	6.56e-17	0.00013586	0.0811	0.043573	1	0.051164	1	3.8197e-07	0.000252	1.768e-08	1.19e-05	0.68666	1	8.9101e-05	0.054	0.00011918	0.0717	0.33348	1
Del Peak 30(16p13.3)	0 (0%)	381	0.30298	1	0.33778	1	0.24923	1	0.26081	1	0.36703	1	0.91317	1	0.090067	1	0.16497	1	0.93001	1	0.56274	1	0.14607	1	0.37471	1
Del Peak 31(16q23.1)	0 (0%)	376	0.2692	1	0.0060782	1	0.25524	1	0.26823	1	0.15371	1	0.8211	1	0.29262	1	0.021836	1	0.59105	1	0.70808	1	1	1	0.75774	1
Del Peak 32(17p12)	0 (0%)	192	2.4712e-08	1.66e-05	4.9672e-07	0.000327	3.5316e-33	2.65e-30	1.0761e-10	7.37e-08	0.0072585	1	7.4152e-05	0.0451	3.8325e-11	2.66e-08	3.3107e-11	2.3e-08	0.59681	1	0.026059	1	8.1347e-11	5.6e-08	0.025952	1
Del Peak 33(17q24.3)	0 (0%)	366	0.095566	1	0.70732	1	0.016593	1	0.0084867	1	0.7296	1	0.33768	1	0.02778	1	0.029256	1	0.79817	1	0.66426	1	0.020915	1	0.16206	1
Del Peak 34(18p11.31)	0 (0%)	198	6.8701e-12	4.82e-09	7.4913e-10	5.08e-07	3.1076e-44	2.34e-41	4.1423e-15	2.99e-12	0.0004203	0.238	0.0010422	0.548	5.0587e-18	3.71e-15	7.5416e-18	5.53e-15	0.87592	1	0.0025041	1	6.5037e-14	4.67e-11	0.018794	1
Del Peak 35(18q12.2)	0 (0%)	171	1.0946e-11	7.65e-09	2.6611e-10	1.82e-07	7.3414e-47	5.54e-44	1.2432e-17	9.1e-15	0.0022411	1	0.00042101	0.238	2.2197e-17	1.62e-14	1.4332e-18	1.05e-15	0.94286	1	0.002721	1	9.8992e-15	7.15e-12	0.10555	1
Del Peak 36(18q21.2)	0 (0%)	158	3.369e-11	2.34e-08	1.4584e-10	9.98e-08	1.1974e-44	9.03e-42	6.6031e-14	4.73e-11	0.0010032	0.53	0.00022543	0.132	3.5592e-13	2.52e-10	1.0594e-13	7.59e-11	0.44378	1	0.070355	1	1.3773e-13	9.83e-11	0.066351	1
Del Peak 37(18q22.1)	0 (0%)	158	8.7582e-11	6.03e-08	8.3418e-10	5.63e-07	3.7566e-47	2.84e-44	3.7452e-14	2.7e-11	0.002469	1	0.00022425	0.131	3.5592e-13	2.52e-10	1.0594e-13	7.59e-11	0.58395	1	0.04905	1	3.4999e-14	2.52e-11	0.064384	1
Del Peak 38(19p13.3)	0 (0%)	369	0.13094	1	0.038528	1	0.00086551	0.465	0.34172	1	0.98102	1	0.067586	1	0.035468	1	0.017858	1	0.44628	1	0.55071	1	0.021363	1	0.14961	1
Del Peak 39(20p12.1)	0 (0%)	347	0.04837	1	0.2029	1	7.2266e-06	0.00463	0.00045504	0.256	0.66829	1	0.27812	1	0.0021232	1	7.0931e-05	0.0433	0.13509	1	0.12195	1	0.0050283	1	0.1577	1
Del Peak 40(21q11.2)	0 (0%)	297	0.02638	1	0.038738	1	5.9487e-11	4.11e-08	0.028947	1	0.1819	1	0.45498	1	0.000607	0.334	0.00065117	0.357	0.90469	1	0.12034	1	0.00018406	0.109	0.15065	1
Del Peak 41(22q13.32)	0 (0%)	282	0.00089249	0.477	0.00023215	0.135	4.0655e-15	2.94e-12	0.0013697	0.715	0.07922	1	0.21849	1	0.00045745	0.257	2.8059e-05	0.0175	0.38009	1	0.0026329	1	8.3327e-06	0.00532	0.47396	1
