		Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q31.1)	0 (0%)	452	0.58357	1	0.30814	1	1.3765e-05	0.0106	0.47561	1	0.36908	1	0.2894	1	0.89043	1	0.13428	1	0.44118	1	0.60971	1	0.022902	1	0.96168	1
Amp Peak  2(2q33.1)	0 (0%)	462	0.088273	1	0.00031948	0.227	0.00034022	0.241	0.0032192	1	0.22912	1	0.90087	1	0.0018628	1	0.017696	1	0.068432	1	0.024258	1	0.17032	1	0.12866	1
Amp Peak  3(5p12)	0 (0%)	480	0.097746	1	0.43491	1	2.4768e-06	0.00196	0.8507	1	0.001027	0.697	0.72076	1	0.00084403	0.579	0.00063463	0.444	0.91425	1	0.68284	1	5.417e-05	0.0406	0.12878	1
Amp Peak  4(5q22.3)	0 (0%)	529	0.56517	1	0.88657	1	0.0061905	1	0.24252	1	0.66238	1	0.81532	1	0.15029	1	0.020528	1	0.45906	1	0.31361	1	0.17072	1	0.90862	1
Amp Peak  5(6p21.1)	0 (0%)	440	0.022387	1	0.0018435	1	8.6206e-15	7.5e-12	0.12235	1	0.57504	1	0.36883	1	0.035144	1	0.074328	1	0.25164	1	0.21606	1	0.0058834	1	0.20638	1
Amp Peak  6(7p21.3)	0 (0%)	245	0.0022982	1	0.00093227	0.636	5.4779e-20	4.86e-17	3.3181e-06	0.00262	0.030472	1	0.026569	1	3.1793e-08	2.59e-05	2.2223e-07	0.000178	0.0065009	1	0.0021882	1	3.5836e-06	0.00282	0.3025	1
Amp Peak  7(8p11.23)	0 (0%)	387	0.39583	1	0.048564	1	8.555e-14	7.37e-11	0.37284	1	0.73206	1	0.49971	1	0.10946	1	0.14195	1	0.017399	1	0.13887	1	0.10307	1	0.20155	1
Amp Peak  8(8p11.21)	0 (0%)	345	0.17312	1	0.0085408	1	5.4133e-25	4.83e-22	0.27942	1	0.70031	1	0.39445	1	0.043475	1	0.15783	1	0.1032	1	0.14726	1	0.44582	1	0.39915	1
Amp Peak  9(8q12.1)	0 (0%)	274	0.14319	1	0.00074934	0.518	4.5316e-44	4.1e-41	0.024798	1	0.02185	1	0.054607	1	2.5512e-05	0.0194	0.0092917	1	0.16534	1	0.16528	1	0.0057232	1	0.030467	1
Amp Peak 10(8q24.21)	0 (0%)	237	0.23902	1	0.00022654	0.162	2.312e-45	2.09e-42	0.0028047	1	0.021434	1	0.28329	1	1.6341e-05	0.0125	0.00079163	0.545	0.17993	1	0.17314	1	0.0013404	0.894	0.11111	1
Amp Peak 11(10q22.3)	0 (0%)	553	1	1	0.18228	1	0.77863	1	0.61575	1	0.2974	1	0.8502	1	0.77929	1	0.20563	1	0.43539	1	0.56278	1	0.0060162	1	0.48166	1
Amp Peak 12(11p15.5)	0 (0%)	457	0.00020189	0.146	0.00068431	0.476	4.7955e-05	0.0361	0.001909	1	0.029355	1	0.23771	1	9.9591e-05	0.0735	5.0899e-05	0.0382	0.43731	1	0.97329	1	0.00019498	0.141	2.5663e-06	0.00203
Amp Peak 13(12p13.32)	0 (0%)	445	0.55635	1	0.78684	1	0.10439	1	0.049117	1	0.47758	1	0.81342	1	0.81699	1	0.88821	1	0.66753	1	0.51686	1	0.44258	1	0.31149	1
Amp Peak 14(13q12.13)	0 (0%)	208	1.9206e-07	0.000155	4.1221e-06	0.00324	5.1645e-41	4.66e-38	1.0525e-11	8.87e-09	0.022088	1	0.063964	1	1.9436e-07	0.000156	1.1338e-08	9.31e-06	0.00042962	0.302	0.43785	1	9.885e-10	8.21e-07	0.0013519	0.9
Amp Peak 15(13q12.2)	0 (0%)	213	4.6534e-06	0.00365	5.2465e-05	0.0393	6.9325e-43	6.26e-40	2.3075e-12	1.95e-09	0.024336	1	0.16887	1	2.7359e-07	0.000219	4.6587e-09	3.84e-06	0.0011363	0.767	0.49702	1	2.7355e-09	2.26e-06	0.012493	1
Amp Peak 16(13q22.1)	0 (0%)	208	9.7292e-06	0.00755	0.00019346	0.14	2.1376e-39	1.92e-36	3.9106e-10	3.28e-07	0.1146	1	0.17377	1	4.9141e-07	0.000392	2.1246e-08	1.74e-05	0.00094125	0.641	0.24805	1	1.207e-07	9.75e-05	0.041	1
Amp Peak 17(15q26.1)	0 (0%)	545	0.52717	1	0.062925	1	0.070886	1	0.76956	1	0.098526	1	0.2763	1	0.18766	1	0.68553	1	0.62759	1	1	1	0.77125	1	1	1
Amp Peak 18(16p11.2)	0 (0%)	427	0.017934	1	0.005738	1	1.6045e-20	1.43e-17	0.00054054	0.379	0.014124	1	0.015693	1	1.3704e-05	0.0106	2.5893e-05	0.0197	0.57563	1	0.83802	1	0.00040666	0.287	0.12208	1
Amp Peak 19(17q12)	0 (0%)	442	0.044286	1	0.027559	1	8.5548e-10	7.12e-07	0.0032886	1	0.13633	1	0.059168	1	0.0011027	0.745	2.9257e-05	0.0221	0.0063927	1	0.1825	1	0.26411	1	0.28818	1
Amp Peak 20(17q24.1)	0 (0%)	458	0.025694	1	0.0012574	0.84	1.8998e-10	1.6e-07	0.00034134	0.241	0.080541	1	0.005577	1	0.0031394	1	0.00018615	0.135	0.00014785	0.108	0.16307	1	0.41441	1	0.2481	1
Amp Peak 21(19p13.2)	0 (0%)	489	0.10769	1	0.43683	1	2.1011e-07	0.000169	0.01009	1	0.66275	1	0.39022	1	0.059207	1	0.1647	1	0.23247	1	0.21898	1	0.15471	1	0.1063	1
Amp Peak 22(19q12)	0 (0%)	465	0.028073	1	0.038973	1	7.1032e-08	5.77e-05	0.12919	1	0.080864	1	0.32613	1	0.051421	1	0.14486	1	0.35154	1	0.90261	1	0.29396	1	0.25662	1
Amp Peak 23(20p11.23)	0 (0%)	283	0.0034567	1	0.0026539	1	1.6929e-08	1.39e-05	0.019561	1	0.0058797	1	0.22648	1	0.00016393	0.119	0.00069475	0.482	0.31084	1	0.22626	1	0.00014225	0.104	0.16532	1
Amp Peak 24(20q11.21)	0 (0%)	140	1.1905e-13	1.02e-10	9.5932e-13	8.15e-10	4.4529e-36	3.99e-33	1.987e-18	1.75e-15	0.0068831	1	0.010343	1	4.4629e-17	3.92e-14	2.236e-20	1.99e-17	0.017296	1	0.16362	1	9.0934e-13	7.74e-10	0.00073349	0.508
Amp Peak 25(20q12)	0 (0%)	138	1.0598e-14	9.2e-12	4.1828e-14	3.62e-11	1.0827e-36	9.7e-34	4.8422e-17	4.25e-14	0.011155	1	0.005549	1	1.7642e-16	1.55e-13	2.0808e-19	1.84e-16	0.0073642	1	0.054319	1	2.7212e-13	2.33e-10	6.6018e-05	0.0493
Amp Peak 26(20q13.32)	0 (0%)	135	7.7972e-14	6.73e-11	2.0156e-12	1.71e-09	7.2996e-37	6.55e-34	4.576e-16	4e-13	0.014228	1	0.0044002	1	1.7642e-16	1.55e-13	2.0808e-19	1.84e-16	0.014983	1	0.11442	1	3.1874e-12	2.7e-09	6.6018e-05	0.0493
Amp Peak 27(Xq28)	0 (0%)	465	0.43576	1	0.88431	1	7.3779e-05	0.0547	0.08163	1	0.0017389	1	0.0093042	1	0.094984	1	0.025674	1	0.91286	1	0.97198	1	0.039739	1	0.59559	1
Del Peak  1(1p36.11)	0 (0%)	365	0.00011447	0.084	0.0037923	1	7.7771e-13	6.63e-10	4.5612e-06	0.00358	0.059604	1	0.14778	1	0.00017203	0.125	0.00013759	0.101	0.44952	1	0.87627	1	0.014193	1	0.024066	1
Del Peak  2(1p33)	0 (0%)	432	0.030575	1	0.091327	1	7.122e-12	6.01e-09	0.00035332	0.249	0.85894	1	0.57447	1	0.0064954	1	0.0034415	1	0.58454	1	0.15672	1	0.009549	1	0.0021933	1
Del Peak  3(1p13.2)	0 (0%)	430	0.28805	1	0.12889	1	7.0446e-09	5.79e-06	0.010933	1	0.56737	1	0.7023	1	0.0063242	1	0.0026436	1	0.65352	1	0.38234	1	0.038025	1	0.13099	1
Del Peak  4(2p12)	0 (0%)	569	1	1	0.81015	1	0.0016921	1	0.0077534	1	0.29643	1	1	1	0.74038	1	0.73176	1	0.010798	1	0.061487	1	1	1	0.7046	1
Del Peak  5(2q22.1)	0 (0%)	555	0.92642	1	0.31059	1	0.17166	1	0.89992	1	0.33923	1	0.90131	1	0.24803	1	0.59112	1	0.58016	1	0.1209	1	0.70961	1	0.91622	1
Del Peak  6(2q37.2)	0 (0%)	559	0.91149	1	0.86255	1	0.53915	1	0.88572	1	0.92351	1	0.16188	1	0.37226	1	0.11181	1	0.61301	1	0.36976	1	0.20761	1	0.39331	1
Del Peak  7(3p26.3)	0 (0%)	503	0.35771	1	0.75263	1	0.041381	1	0.35384	1	0.56183	1	0.82449	1	0.25926	1	0.76935	1	0.6925	1	0.13537	1	0.038208	1	0.10637	1
Del Peak  8(3p14.2)	0 (0%)	482	0.61954	1	0.9908	1	0.6145	1	0.62298	1	0.5008	1	0.67377	1	0.96337	1	0.795	1	0.26124	1	0.15295	1	0.094736	1	0.75399	1
Del Peak  9(3q26.31)	0 (0%)	530	0.54351	1	0.78763	1	0.063396	1	0.53224	1	0.33131	1	0.51007	1	0.59189	1	0.58311	1	0.22889	1	0.40211	1	0.3793	1	0.039601	1
Del Peak 10(4p16.1)	0 (0%)	402	0.065426	1	0.43666	1	7.6492e-14	6.61e-11	0.0014983	0.995	0.40166	1	0.92296	1	0.0047719	1	2.2989e-05	0.0175	0.43794	1	0.073038	1	0.00024997	0.178	0.18766	1
Del Peak 11(4q22.1)	0 (0%)	385	0.021594	1	0.030995	1	2.0608e-14	1.79e-11	1.7904e-05	0.0137	0.54076	1	0.77009	1	0.0012269	0.822	0.012407	1	0.033918	1	0.0068659	1	0.0026251	1	0.039236	1
Del Peak 12(4q35.1)	0 (0%)	374	0.021025	1	0.1701	1	2.2447e-14	1.94e-11	6.214e-05	0.0465	0.29543	1	0.88791	1	0.0017439	1	0.0066935	1	0.32526	1	0.036817	1	7.6802e-05	0.0569	0.011156	1
Del Peak 13(5q11.2)	0 (0%)	446	0.00059982	0.42	0.0046582	1	3.448e-11	2.9e-08	0.0012069	0.81	0.020526	1	0.54742	1	0.031231	1	0.020302	1	0.83906	1	0.028221	1	6.6786e-06	0.00521	0.0036436	1
Del Peak 14(5q22.2)	0 (0%)	414	0.0010635	0.72	0.031384	1	6.387e-10	5.35e-07	0.072018	1	0.16969	1	0.92197	1	0.11019	1	0.15324	1	0.51998	1	0.021369	1	0.00091366	0.624	0.051791	1
Del Peak 15(6p25.3)	0 (0%)	511	0.90663	1	0.55332	1	0.39963	1	0.31844	1	0.047218	1	0.94018	1	0.50002	1	0.52778	1	0.64145	1	0.8684	1	0.39669	1	0.42467	1
Del Peak 16(6q26)	0 (0%)	499	0.77681	1	0.33063	1	0.37272	1	0.86349	1	0.047137	1	0.45135	1	0.68691	1	0.86578	1	0.42323	1	0.61161	1	0.42403	1	0.31621	1
Del Peak 17(7q31.1)	0 (0%)	574	0.29223	1	0.93264	1	1	1	1	1	0.87262	1	0.27267	1	0.71229	1	1	1	0.15818	1	0.48775	1	0.25691	1	0.76114	1
Del Peak 18(8p23.3)	0 (0%)	312	0.0016832	1	0.00051819	0.364	3.054e-47	2.77e-44	4.1865e-07	0.000335	0.079165	1	0.0053293	1	7.4959e-06	0.00584	2.3372e-06	0.00185	0.1754	1	0.18365	1	1.6157e-05	0.0124	0.0085601	1
Del Peak 19(8p23.2)	0 (0%)	312	0.00025797	0.183	0.00014587	0.107	3.4426e-51	3.13e-48	1.0121e-07	8.2e-05	0.14986	1	0.0031593	1	2.604e-06	0.00206	8.3184e-07	0.000661	0.21868	1	0.090121	1	7.6715e-06	0.00597	0.0056626	1
Del Peak 20(8p22)	0 (0%)	299	0.0011796	0.794	0.00085665	0.587	5.7901e-54	5.27e-51	7.972e-08	6.47e-05	0.10894	1	0.0022544	1	1.1514e-05	0.00891	1.4905e-06	0.00118	0.27304	1	0.036939	1	2.2403e-05	0.0171	0.0011852	0.796
Del Peak 21(8q11.1)	0 (0%)	544	0.5801	1	0.55725	1	0.00021165	0.152	0.56542	1	0.34395	1	0.56794	1	0.15478	1	0.13705	1	0.12848	1	0.11029	1	0.51905	1	0.45348	1
Del Peak 22(9p24.2)	0 (0%)	510	0.45163	1	0.29858	1	0.0068027	1	0.048085	1	0.56407	1	0.59166	1	0.23264	1	0.34065	1	0.2702	1	0.085082	1	0.043362	1	0.26014	1
Del Peak 23(10p15.3)	0 (0%)	486	0.23157	1	0.16851	1	7.7747e-06	0.00604	0.028294	1	0.020505	1	0.15821	1	0.024051	1	0.0006612	0.462	0.70398	1	0.28912	1	0.062071	1	0.014342	1
Del Peak 24(10q21.1)	0 (0%)	469	0.17122	1	0.11962	1	8.5249e-10	7.1e-07	0.099339	1	0.072821	1	0.13262	1	0.016429	1	0.020272	1	0.75423	1	0.30144	1	0.023311	1	0.25191	1
Del Peak 25(10q23.31)	0 (0%)	441	0.13642	1	0.5197	1	4.434e-07	0.000354	0.15713	1	0.061014	1	0.24197	1	0.0021429	1	0.0041743	1	0.72306	1	0.013346	1	0.00096502	0.656	0.0080636	1
Del Peak 26(10q25.2)	0 (0%)	447	0.318	1	0.16237	1	6.6166e-09	5.45e-06	0.039876	1	0.0043082	1	0.24513	1	0.0016283	1	0.00024089	0.172	0.9908	1	0.003052	1	0.0015454	1	0.035956	1
Del Peak 27(11q22.3)	0 (0%)	484	0.47835	1	0.065843	1	0.074301	1	0.074974	1	0.25989	1	0.14737	1	1	1	0.96293	1	0.81832	1	0.74162	1	0.2681	1	0.54467	1
Del Peak 28(12p13.1)	0 (0%)	510	0.0059934	1	0.014154	1	7.0094e-10	5.85e-07	0.38857	1	0.89237	1	0.73193	1	0.42275	1	0.4872	1	0.69485	1	0.37638	1	0.019165	1	0.16768	1
Del Peak 29(12q21.31)	0 (0%)	510	0.062856	1	0.067723	1	2.7237e-08	2.22e-05	0.14422	1	0.57439	1	0.59067	1	0.02766	1	0.0026103	1	0.71842	1	0.97943	1	0.079297	1	0.029118	1
Del Peak 30(14q11.2)	0 (0%)	396	3.66e-05	0.0276	5.7118e-06	0.00447	1.8145e-40	1.63e-37	4.995e-05	0.0376	0.003661	1	0.18552	1	3.9978e-06	0.00315	9.4323e-05	0.0697	0.060881	1	0.59971	1	7.6344e-07	0.000608	0.075959	1
Del Peak 31(14q31.1)	0 (0%)	391	0.00077289	0.533	0.00025687	0.183	4.8226e-38	4.34e-35	0.00010537	0.0774	0.00069369	0.482	0.035715	1	1.5645e-05	0.012	0.00024402	0.174	0.26613	1	0.57224	1	3.1553e-07	0.000252	0.077841	1
Del Peak 32(14q31.1)	0 (0%)	387	0.0012318	0.824	0.00065312	0.457	1.617e-37	1.45e-34	4.5694e-05	0.0345	0.0010575	0.717	0.047194	1	1.1185e-05	0.00867	7.3458e-05	0.0546	0.40213	1	0.68244	1	1.1456e-07	9.27e-05	0.10694	1
Del Peak 33(15q11.2)	0 (0%)	353	0.0008209	0.565	0.0048717	1	3.1622e-21	2.82e-18	0.0049805	1	0.21321	1	0.35894	1	0.00014756	0.108	2.4594e-05	0.0187	0.39168	1	0.14878	1	4.9052e-06	0.00384	0.64793	1
Del Peak 34(15q21.1)	0 (0%)	360	0.0008361	0.574	0.02392	1	4.9646e-19	4.39e-16	0.010703	1	0.10571	1	0.13029	1	0.00025044	0.178	0.00067293	0.469	0.65513	1	0.2673	1	0.00010439	0.0768	0.59933	1
Del Peak 35(15q22.33)	0 (0%)	369	0.00019922	0.144	0.0011582	0.781	5.8046e-21	5.17e-18	0.001871	1	0.58637	1	0.46255	1	3.2923e-05	0.0249	6.5728e-06	0.00513	0.79182	1	0.46644	1	2.5781e-05	0.0196	0.20183	1
Del Peak 36(16p13.3)	0 (0%)	530	0.13856	1	0.11894	1	0.80791	1	0.6174	1	0.48982	1	0.78854	1	0.44437	1	0.11683	1	0.63787	1	0.23291	1	0.73403	1	0.54399	1
Del Peak 37(16q23.1)	0 (0%)	515	0.04389	1	0.0072891	1	0.31079	1	0.25236	1	0.2211	1	0.92463	1	0.40798	1	0.56664	1	0.72648	1	0.49481	1	0.55643	1	0.3615	1
Del Peak 38(17p12)	0 (0%)	240	8.379e-08	6.8e-05	2.2016e-05	0.0168	9.9638e-35	8.91e-32	5.8116e-09	4.79e-06	0.0085813	1	0.024703	1	1.5e-07	0.000121	1.8878e-09	1.56e-06	0.015745	1	0.054349	1	2.4753e-08	2.02e-05	0.15554	1
Del Peak 39(17q24.3)	0 (0%)	503	1	1	0.22422	1	0.01976	1	0.54816	1	0.94672	1	0.52344	1	0.37058	1	0.71345	1	0.82958	1	0.52392	1	0.033092	1	0.67106	1
Del Peak 40(18p11.31)	0 (0%)	239	5.7977e-12	4.9e-09	6.2426e-10	5.23e-07	1.0292e-44	9.31e-42	4.8979e-18	4.32e-15	0.041691	1	0.03053	1	2.2461e-16	1.97e-13	2.4185e-15	2.11e-12	0.0045851	1	0.65136	1	1.0009e-14	8.7e-12	0.00023653	0.169
Del Peak 41(18q12.2)	0 (0%)	194	1.0102e-09	8.38e-07	4.5892e-09	3.79e-06	1.1362e-52	1.03e-49	1.5853e-20	1.41e-17	0.034229	1	0.028019	1	1.7679e-15	1.54e-12	4.7635e-13	4.07e-10	0.00088348	0.604	0.089126	1	6.2499e-15	5.44e-12	0.00022042	0.158
Del Peak 42(18q21.2)	0 (0%)	177	3.7165e-10	3.12e-07	1.643e-08	1.35e-05	5.3209e-54	4.85e-51	1.1413e-17	1e-14	0.014853	1	0.024656	1	1.6806e-13	1.44e-10	3.4604e-13	2.96e-10	7.0759e-05	0.0526	0.17754	1	7.9929e-13	6.81e-10	0.00069667	0.483
Del Peak 43(18q22.1)	0 (0%)	182	2.012e-09	1.67e-06	1.232e-07	9.94e-05	4.4666e-56	4.07e-53	3.8013e-18	3.35e-15	0.031305	1	0.019973	1	3.8375e-13	3.28e-10	1.0686e-12	9.07e-10	6.6628e-05	0.0496	0.37731	1	2.1254e-13	1.82e-10	0.026958	1
Del Peak 44(19p13.3)	0 (0%)	496	0.11712	1	0.15089	1	2.611e-05	0.0198	0.6569	1	0.88007	1	0.66556	1	0.37058	1	0.31715	1	0.51735	1	9.9887e-05	0.0736	0.020615	1	0.014823	1
Del Peak 45(19q13.43)	0 (0%)	521	0.72014	1	0.21925	1	9.2409e-05	0.0684	0.29757	1	0.16503	1	0.93678	1	0.47672	1	0.14265	1	0.22484	1	0.13044	1	0.12146	1	0.5773	1
Del Peak 46(20p12.1)	0 (0%)	408	0.019713	1	0.020259	1	6.5632e-10	5.49e-07	1.2733e-05	0.00984	0.74141	1	0.0071167	1	0.025055	1	0.0048906	1	0.087334	1	0.10327	1	0.096386	1	0.0827	1
Del Peak 47(20p12.1)	0 (0%)	408	0.019713	1	0.020259	1	6.5632e-10	5.49e-07	1.2733e-05	0.00984	0.74141	1	0.0071167	1	0.025055	1	0.0048906	1	0.087334	1	0.10327	1	0.096386	1	0.0827	1
Del Peak 48(21q11.2)	0 (0%)	389	0.022381	1	0.021634	1	5.7434e-08	4.68e-05	0.0077924	1	0.57391	1	0.21291	1	0.0014835	0.986	0.0040076	1	0.041256	1	0.33574	1	0.00021983	0.158	0.083215	1
Del Peak 49(22q13.32)	0 (0%)	378	0.0047599	1	0.005782	1	1.1527e-13	9.93e-11	0.016506	1	0.46894	1	0.61741	1	0.046036	1	0.02901	1	0.93563	1	0.63834	1	0.0001765	0.128	0.502	1
