Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-IG-A3I8-01A-11D-A246-01	TCGA-IG-A3QL-01A-11D-A246-01	TCGA-IG-A3Y9-01A-12D-A246-01	TCGA-IG-A3YA-01A-11D-A246-01	TCGA-IG-A3YB-01A-11D-A246-01	TCGA-IG-A3YC-01A-11D-A246-01	TCGA-IG-A4P3-01A-11D-A25X-01	TCGA-IG-A4QS-01A-11D-A25X-01	TCGA-IG-A4QT-01A-21D-A25X-01	TCGA-IG-A50L-01A-11D-A25X-01	TCGA-IG-A51D-01A-11D-A25X-01	TCGA-IG-A5B8-01A-11D-A28A-01	TCGA-IG-A5S3-01A-11D-A28A-01	TCGA-L5-A43C-01A-11D-A246-01	TCGA-L5-A43E-01A-11D-A246-01	TCGA-L5-A43H-01A-11D-A246-01	TCGA-L5-A43I-01A-11D-A246-01	TCGA-L5-A43J-01A-12D-A246-01	TCGA-L5-A43M-01A-11D-A246-01	TCGA-L5-A4OE-01A-11D-A25X-01	TCGA-L5-A4OF-01A-11D-A25X-01	TCGA-L5-A4OG-01A-11D-A25X-01	TCGA-L5-A4OH-01A-11D-A25X-01	TCGA-L5-A4OI-01A-11D-A25X-01	TCGA-L5-A4OJ-01A-11D-A25X-01	TCGA-L5-A4OM-01A-11D-A25X-01	TCGA-L5-A4ON-01A-11D-A25X-01	TCGA-L5-A4OO-01A-11D-A25X-01	TCGA-L5-A4OP-01A-11D-A25X-01	TCGA-L5-A4OQ-01A-11D-A25X-01	TCGA-L5-A4OR-01A-11D-A25X-01	TCGA-L5-A4OS-01A-11D-A28A-01	TCGA-L5-A4OT-01A-11D-A28A-01	TCGA-L5-A4OU-01A-11D-A28A-01	TCGA-L5-A4OW-01A-11D-A28A-01	TCGA-L5-A4OX-01A-21D-A28A-01	TCGA-L7-A56G-01A-21D-A25X-01	TCGA-LN-A49K-01A-11D-A246-01	TCGA-LN-A49L-01A-11D-A246-01	TCGA-LN-A49M-01A-21D-A25X-01	TCGA-LN-A49N-01A-11D-A246-01	TCGA-LN-A49O-01A-11D-A246-01	TCGA-LN-A49P-01A-11D-A246-01	TCGA-LN-A49R-01A-11D-A246-01	TCGA-LN-A49S-01A-11D-A246-01	TCGA-LN-A49U-01A-31D-A25X-01	TCGA-LN-A49V-01A-11D-A246-01	TCGA-LN-A49W-01A-11D-A25X-01	TCGA-LN-A49X-01A-31D-A25X-01	TCGA-LN-A49Y-01A-11D-A25X-01	TCGA-LN-A4A1-01A-21D-A25X-01	TCGA-LN-A4A2-01A-31D-A25X-01	TCGA-LN-A4A3-01A-11D-A25X-01	TCGA-LN-A4A4-01A-11D-A25X-01	TCGA-LN-A4A5-01A-21D-A25X-01	TCGA-LN-A4A6-01A-11D-A25X-01	TCGA-LN-A4A8-01A-32D-A25X-01	TCGA-LN-A4A9-01A-11D-A28A-01	TCGA-LN-A4MQ-01A-11D-A28A-01	TCGA-LN-A4MR-01A-11D-A28A-01	TCGA-LN-A5U5-01A-21D-A28A-01	TCGA-LN-A5U6-01A-11D-A28A-01	TCGA-M9-A5M8-01A-11D-A28A-01	
Amplification Peak  1	1p34.2  	chr1:39565350-42557010(probes 19167:20782)      	chr1:40284188-40567133(probes 19477:19638)      	chr1:39568931-40571711(probes 19168:19641)      	0.078442	   0.078442		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	2	0	0	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	2	1	0	0	0	0	0	0	0	0	2	0	1	0	0	0	
Amplification Peak  2	1q42.3  	chr1:120397781-249250621(probes 67746:129188) 	chr1:235125867-235243586(probes 121309:121315)	chr1:234930172-235527646(probes 121160:121415)	0.1109	     0.1109		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	1	0	1	1	2	0	0	1	1	1	1	0	0	1	0	0	0	0	1	0	1	0	0	2	2	0	1	1	0	0	1	0	0	1	1	2	2	0	0	0	0	0	1	1	2	1	0	0	0	1	1	0	0	0	1	1	1	2	1	1	0	
Amplification Peak  3	2q14.2  	chr2:122266853-122371509(probes 193064:193099)	chr2:122268229-122371437(probes 193065:193098)	chr2:122254958-122706433(probes 193061:193281)	0.0097512	  0.0097512		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	1	1	0	0	0	1	0	0	1	0	1	0	2	0	0	0	0	0	1	0	1	0	0	0	0	1	1	0	0	0	1	2	0	0	2	0	0	0	1	0	0	2	0	0	2	0	
Amplification Peak  4	3q26.2  	chr3:153593438-198022430(probes 344756:366959)	chr3:168783201-168843589(probes 352095:352135)	chr3:140611015-198022430(probes 338071:366959)	3.3383e-07	 3.3383e-07		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	1	1	2	1	1	2	1	0	2	2	1	1	0	2	2	0	1	0	1	0	0	0	0	0	2	1	1	2	2	1	0	0	1	1	0	2	2	2	1	1	1	1	1	1	0	1	1	0	2	1	2	1	2	1	1	1	2	2	1	2	2	0	
Amplification Peak  5	5p15.33 	chr5:1-3266759(probes 469750:471053)               	chr5:1020355-1344354(probes 469800:469820)        	chr5:1-3268905(probes 469750:471055)               	0.011559	   0.011559		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	0	0	1	1	1	0	0	2	0	2	1	1	0	1	1	2	1	0	0	0	1	2	0	2	0	0	1	0	2	0	1	1	2	0	1	1	0	0	0	1	0	1	1	2	0	1	1	2	1	0	0	1	1	2	1	2	1	2	2	2	0	
Amplification Peak  6	6p21.1  	chr6:43582177-43996355(probes 596033:596255)    	chr6:43716617-43756051(probes 596095:596106)    	chr6:42880938-44405252(probes 595696:596489)    	0.0017195	  0.0024554		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	2	0	2	2	0	1	0	0	1	0	0	1	1	0	0	1	0	0	2	0	1	0	1	0	0	1	0	0	0	0	0	2	1	0	0	0	0	
Amplification Peak  7	6q12    	chr6:65318771-65423033(probes 605652:605705)    	chr6:65319967-65327563(probes 605653:605653)    	chr6:65319967-65423477(probes 605653:605707)    	0.12313	    0.15862		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	1	0	0	1	1	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	
Amplification Peak  8	7p11.2  	chr7:54815172-55715052(probes 699044:699797)    	chr7:55221656-55507579(probes 699474:699679)    	chr7:52771343-57921703(probes 697793:700218)    	1.4516e-06	 1.7042e-06		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	2	0	0	1	1	0	0	2	1	1	1	1	1	1	2	1	0	1	1	1	2	0	2	1	2	1	0	1	2	1	1	1	1	0	1	1	0	0	0	1	0	1	0	1	2	1	1	2	1	1	2	2	0	1	2	0	0	2	0	1	0	
Amplification Peak  9	7q21.2  	chr7:91842993-93671906(probes 713115:714298)    	chr7:92445481-92459416(probes 713558:713569)    	chr7:84182369-109072928(probes 710028:722252)  	5.2971e-07	 6.0077e-07		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	0	1	2	0	1	0	1	2	0	1	1	1	1	1	0	0	1	0	1	2	0	0	2	2	1	0	1	1	1	1	2	2	0	1	1	2	0	0	2	1	1	1	1	1	0	2	2	2	1	2	2	0	1	1	1	0	0	0	1	0	
Amplification Peak 10	8p11.21 	chr8:41578578-42518767(probes 772172:772779)    	chr8:42022960-42133101(probes 772429:772487)    	chr8:41343376-42521400(probes 772037:772781)    	0.012626	   0.012626		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	2	0	2	0	0	2	1	0	0	1	0	0	1	2	1	2	0	0	0	1	0	0	1	0	1	1	1	0	0	1	0	1	0	1	1	0	1	1	0	0	0	2	0	1	1	1	0	1	2	0	0	1	2	0	1	0	1	1	0	0	0	0	
Amplification Peak 11	8q24.21 	chr8:128024202-128992643(probes 819257:819926)	chr8:128198180-128307796(probes 819369:819449)	chr8:98704076-146364022(probes 802029:829750)  	1.1393e-12	 1.1393e-12		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	2	1	1	1	1	0	2	0	2	1	2	0	2	2	1	1	2	0	1	0	0	2	1	2	1	2	1	0	2	1	1	1	0	1	1	2	1	2	1	1	2	2	2	2	2	2	1	1	1	2	2	1	2	2	1	0	2	1	2	2	1	0	
Amplification Peak 12	10p11.21	chr10:35335459-35408297(probes 921886:921907)  	chr10:35338674-35404274(probes 921887:921906)  	chr10:35166628-35623783(probes 921878:921965)  	0.043206	   0.043206		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	1	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	2	2	1	1	0	1	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	
Amplification Peak 13	11p13   	chr11:32912175-37667461(probes 999454:1002303) 	chr11:35244059-35263023(probes 1000993:1001007)	chr11:34798611-36028757(probes 1000546:1001626)	0.022421	   0.025349		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	1	0	0	1	0	0	1	1	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	2	0	2	0	2	0	0	0	1	0	0	0	1	0	0	0	1	1	2	0	0	
Amplification Peak 14	11q13.3 	chr11:69838585-70248899(probes 1015334:1015566)	chr11:69940436-69993573(probes 1015406:1015436)	chr11:67137947-74637634(probes 1014241:1017832)	5.7709e-50	 5.7709e-50		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	2	2	0	2	2	0	0	0	2	0	2	0	0	2	2	1	1	1	1	1	1	0	0	2	0	0	0	2	0	1	0	2	0	0	2	2	0	2	2	0	0	2	1	0	2	2	1	2	2	2	2	2	2	2	2	0	1	2	0	2	0	
Amplification Peak 15	12p13.33	chr12:1-1071814(probes 1055984:1056062)           	chr12:1-1037228(probes 1055984:1056045)           	chr12:1-1866203(probes 1055984:1056190)           	0.034639	   0.056185		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	1	2	0	1	0	0	1	0	0	2	0	0	1	0	1	2	1	0	0	0	2	0	1	0	1	0	0	1	0	0	0	0	0	2	1	1	0	0	2	0	1	1	0	1	1	0	0	1	1	0	2	0	1	2	0	1	2	1	1	0	
Amplification Peak 16	12p12.1 	chr12:24880663-25784000(probes 1070061:1070588)	chr12:24885718-25556703(probes 1070062:1070409)	chr12:24885718-25789332(probes 1070062:1070590)	0.094742	    0.14487		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	0	2	1	1	2	0	1	0	0	2	0	0	1	0	1	0	1	0	0	0	2	0	1	1	1	0	0	0	0	2	2	0	0	2	1	1	2	0	2	1	1	1	0	1	1	0	0	1	0	1	2	0	1	1	0	1	2	1	1	0	
Amplification Peak 17	14q22.1 	chr14:51753294-51904951(probes 1202658:1202776)	chr14:51753550-51903438(probes 1202659:1202775)	chr14:51693655-51942581(probes 1202634:1202809)	0.036054	   0.036054		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	1	1	0	0	1	0	0	0	0	0	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	2	0	0	1	0	0	1	1	1	0	1	0	1	0	1	2	1	0	0	2	0	1	0	2	0	
Amplification Peak 18	17q12   	chr17:37737138-37930169(probes 1336638:1336748)	chr17:37737580-37929558(probes 1336639:1336747)	chr17:37449390-38356814(probes 1336515:1336912)	3.7335e-05	 9.2391e-05		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	0	0	0	0	0	1	1	0	0	0	1	1	1	0	0	1	0	0	0	0	0	0	1	1	0	2	0	2	0	2	2	0	0	0	2	0	0	0	0	1	1	1	1	0	0	0	0	1	1	1	0	0	2	0	0	0	0	0	2	
Amplification Peak 19	17q24.3 	chr17:66293985-70596221(probes 1351058:1354155)	chr17:67413117-67669243(probes 1351788:1351945)	chr17:67311149-68706022(probes 1351733:1352673)	0.043206	    0.10467		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	0	0	1	0	0	1	1	1	0	0	1	1	1	0	0	1	0	2	2	0	2	0	1	1	0	1	0	0	0	1	0	0	1	0	0	0	0	1	0	1	1	0	1	0	0	2	1	1	1	1	0	0	0	1	0	0	0	1	0	
Amplification Peak 20	18p11.32	chr18:1-2081265(probes 1358454:1358962)           	chr18:985109-1075852(probes 1358578:1358629)      	chr18:1-2087487(probes 1358454:1358964)           	0.030021	   0.030021		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	1	0	1	0	1	2	0	1	0	1	0	0	0	0	0	0	1	1	0	2	2	2	1	1	1	0	0	1	1	0	0	0	0	1	1	1	0	0	
Amplification Peak 21	18q11.2 	chr18:20863588-22012348(probes 1367761:1368450)	chr18:20864023-20890717(probes 1367762:1367777)	chr18:19404300-22736415(probes 1366946:1369017)	0.00032725	 0.00032725		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	2	0	1	2	0	2	0	0	0	0	2	1	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	2	0	0	0	0	1	0	0	2	0	
Amplification Peak 22	19p13.2 	chr19:7296453-7398264(probes 1403166:1403173)    	chr19:7300056-7397014(probes 1403167:1403172)    	chr19:7300056-7405648(probes 1403167:1403175)    	0.004154	   0.004154		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	0	2	0	0	0	0	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	2	0	0	0	0	1	0	0	0	2	0	2	0	0	2	0	0	0	1	0	0	0	
Amplification Peak 23	19p13.11	chr19:18408223-21249332(probes 1408192:1408802)	chr19:19601226-19604323(probes 1408669:1408669)	chr19:19601226-19611267(probes 1408669:1408672)	0.20438	    0.20438		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	0	0	0	0	0	2	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	2	1	0	2	1	0	0	0	0	0	1	1	2	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	
Amplification Peak 24	19q12   	chr19:29460241-34309276(probes 1411060:1414422)	chr19:31334191-31372778(probes 1412445:1412483)	chr19:30458486-31412031(probes 1411852:1412510)	0.078442	   0.078442		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	1	1	0	1	0	0	0	2	1	0	2	1	2	0	0	0	0	1	1	2	0	0	0	2	0	0	1	0	2	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	
Amplification Peak 25	Xp11.4  	chrX:40732423-40742477(probes 1516899:1516907)  	chrX:40732510-40742181(probes 1516900:1516906)  	chrX:40732510-40746768(probes 1516900:1516909)  	0.10066	    0.10066		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0	1	0	2	0	2	0	0	0	0	0	
Deletion Peak  1	1p36.13 	chr1:1-66844528(probes 1:35836)                      	chr1:17861406-18026003(probes 7623:7705)            	chr1:17937648-17946182(probes 7665:7666)            	0.17199	    0.18877		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	1	1	1	1	1	0	0	0	0	0	0	0	0	1	0	1	1	1	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	
Deletion Peak  2	1p13.2  	chr1:95930119-149882013(probes 53472:67827)        	chr1:114417343-114525573(probes 63975:64028)      	chr1:104850769-149881397(probes 58456:67826)      	0.0049153	   0.005969		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	0	1	1	0	1	0	1	0	0	0	1	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	1	1	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	1	0	0	0	1	1	
Deletion Peak  3	1q44    	chr1:178641946-249250621(probes 85403:129188)     	chr1:245911868-247052144(probes 128533:128759)    	chr1:246037293-246037919(probes 128647:128648)    	0.18271	    0.18271		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	
Deletion Peak  4	2q22.1  	chr2:139655617-143637838(probes 201402:203831)    	chr2:140976294-142894275(probes 202124:203394)    	chr2:141496270-142372239(probes 202437:202985)    	2.49e-08	 3.7472e-08		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	0	1	1	1	0	0	1	1	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	
Deletion Peak  5	2q34    	chr2:1-243199373(probes 129189:260545)               	chr2:213789275-213792626(probes 243105:243106)    	chr2:213429190-213939570(probes 242878:243222)    	0.17199	    0.23479		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	0	1	1	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	1	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	
Deletion Peak  6	3p26.1  	chr3:1-14697947(probes 260546:268103)                	chr3:3911711-4396190(probes 261647:261648)            	chr3:3911711-4765092(probes 261647:261992)            	0.12287	    0.18342		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	1	1	0	1	0	1	1	1	1	0	1	1	0	1	1	0	0	1	1	0	0	1	0	1	1	0	1	1	1	0	1	0	1	1	0	0	1	1	1	1	1	1	0	0	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	
Deletion Peak  7	3p14.3  	chr3:53923579-55500153(probes 290099:291356)        	chr3:54150629-55115508(probes 290224:291014)        	chr3:54308103-54793449(probes 290361:290724)        	0.00065103	   0.023184		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	0	1	1	0	1	1	1	0	1	1	0	1	1	1	0	0	0	0	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	
Deletion Peak  8	3p14.2  	chr3:59034763-61547330(probes 293457:294352)        	chr3:59702822-61238217(probes 293965:294166)        	chr3:61027858-63267571(probes 293971:295588)        	3.7964e-05	  0.0014958		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	0	1	1	1	0	0	0	0	1	1	1	1	0	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	
Deletion Peak  9	3q11.1  	chr3:70016017-93778057(probes 300620:311493)        	chr3:90485637-93778057(probes 311481:311493)        	chr3:74611544-93740691(probes 303819:311484)        	0.034493	    0.18877		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	1	1	0	
Deletion Peak 10	3q26.31 	chr3:173999806-175760559(probes 354919:355663)    	chr3:174575145-175760559(probes 355274:355663)    	chr3:174889888-174893774(probes 355469:355470)    	0.032299	   0.032299		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	
Deletion Peak 11	4p15.2  	chr4:1-36250854(probes 366960:388559)                	chr4:20727465-21952452(probes 379018:379939)        	chr4:21333113-21363640(probes 379479:379480)        	0.15467	    0.15467		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	0	1	1	1	0	1	0	1	0	1	0	0	0	0	1	1	0	1	0	0	1	1	0	1	0	0	1	0	1	0	1	1	0	1	1	1	1	0	0	1	0	1	0	0	1	1	1	1	1	0	0	1	1	0	0	1	0	1	0	
Deletion Peak 12	4q22.1  	chr4:90844993-93240505(probes 416864:418021)        	chr4:91035787-92526033(probes 416911:417709)        	chr4:91162419-91991095(probes 416967:417466)        	1.0109e-07	 1.0109e-07		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	0	0	0	0	1	0	1	0	1	0	1	0	0	0	1	1	1	0	1	0	0	0	0	0	1	0	1	1	1	1	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	1	0	1	0	0	1	0	0	1	0	1	1	0	
Deletion Peak 13	5q11.2  	chr5:58260298-59787985(probes 500841:501784)        	chr5:58260298-59787985(probes 500841:501784)        	chr5:58298361-59059492(probes 500875:501423)        	6.2463e-08	 1.6523e-06		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	0	1	0	0	1	0	1	1	0	0	0	1	0	0	1	0	1	1	1	1	0	1	1	0	1	1	0	1	1	1	0	1	0	1	1	0	0	1	0	0	1	1	1	1	1	0	1	0	1	0	0	1	0	1	0	1	0	1	1	1	
Deletion Peak 14	5q12.3  	chr5:53178519-102400062(probes 497487:523460)      	chr5:65889312-66468313(probes 504896:505354)        	chr5:65080683-81771064(probes 504368:513503)        	0.007561	   0.074113		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	0	1	1	0	1	0	1	1	0	0	0	1	0	0	1	0	1	1	1	1	0	1	1	0	1	1	0	1	1	1	0	1	0	1	1	0	1	1	0	0	1	1	1	1	1	0	1	0	1	0	0	1	0	1	0	1	0	1	1	1	
Deletion Peak 15	6p25.3  	chr6:1608837-2252425(probes 570806:571226)            	chr6:1621405-2252425(probes 570809:571226)            	chr6:1716711-2259327(probes 570890:571230)            	0.00022848	 0.00022848		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	1	1	0	1	0	0	1	1	1	1	0	1	0	0	0	1	0	0	0	0	1	1	1	1	1	0	0	0	1	0	0	1	0	0	1	0	1	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	
Deletion Peak 16	6q14.2  	chr6:64422985-119138282(probes 605210:635795)      	chr6:83898170-83908506(probes 616031:616033)        	chr6:82526039-84078563(probes 615315:616114)        	0.13082	    0.13656		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	1	1	0	0	1	0	0	1	1	1	0	0	1	
Deletion Peak 17	7q31.1  	chr7:109599468-111366370(probes 722526:723227)    	chr7:110236682-111354928(probes 722942:723221)    	chr7:110437436-111426681(probes 723032:723270)    	1.9847e-07	 0.00018871		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	1	1	0	1	0	0	1	1	0	1	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	1	1	1	0	0	1	0	0	1	0	0	0	1	0	0	1	
Deletion Peak 18	7q36.2  	chr7:151566143-159138663(probes 744726:748180)    	chr7:154715153-154739216(probes 746082:746099)    	chr7:120002433-159138663(probes 727703:748180)    	5.6787e-06	  0.0043913		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	1	0	0	0	1	1	0	1	0	0	1	0	0	0	1	0	0	0	0	1	1	0	1	0	1	1	0	1	0	0	0	0	1	0	0	1	0	1	1	0	0	1	1	1	1	0	1	0	0	1	0	0	1	1	0	0	1	
Deletion Peak 19	8p23.2  	chr8:2079140-6262191(probes 748920:750770)            	chr8:2784419-4854274(probes 748968:750391)            	chr8:3519695-3520870(probes 749680:749681)            	0.013777	   0.013521		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	1	0	1	1	0	1	1	0	1	0	0	0	1	1	0	1	1	0	1	0	0	0	0	1	0	0	0	0	1	0	0	1	1	0	1	1	1	0	0	0	1	0	0	1	0	1	1	1	1	0	1	0	0	0	1	1	0	1	0	
Deletion Peak 20	9p21.3  	chr9:21865498-21997722(probes 843188:843251)        	chr9:21959052-21997722(probes 843239:843251)        	chr9:20471313-28359876(probes 842205:847172)        	4.2952e-62	 4.2952e-62		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	1	1	1	1	1	0	1	1	1	1	1	0	1	1	1	1	0	1	0	1	0	0	1	1	1	1	0	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	
Deletion Peak 21	10p11.21	chr10:34059131-35328087(probes 921138:921877)      	chr10:34597962-35128523(probes 921548:921858)      	chr10:34865759-34867204(probes 921704:921705)      	0.0010606	 0.00098626		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	0	0	0	1	0	0	1	0	1	1	0	0	1	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	1	0	1	1	0	0	
Deletion Peak 22	10q23.31	chr10:89617158-90533234(probes 949996:950672)      	chr10:89617402-89735596(probes 949997:950185)      	chr10:86498332-92132870(probes 948212:951790)      	0.00026125	 0.00026125		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	0	1	0	0	0	0	1	0	0	1	1	0	1	0	1	1	1	0	1	1	0	1	0	0	1	0	0	1	1	1	0	1	0	1	0	1	1	0	0	0	1	0	0	0	0	0	1	1	1	0	0	1	1	0	0	1	1	0	1	0	
Deletion Peak 23	11p15.4 	chr11:3861173-4115961(probes 979860:980008)          	chr11:3872464-4115961(probes 979870:980008)          	chr11:3999073-4001007(probes 979940:979941)          	0.0095616	  0.0099856		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	1	0	0	0	0	1	0	0	0	1	0	1	0	0	1	0	0	1	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	1	0	1	1	1	1	1	0	1	0	0	1	0	1	1	1	0	0	1	0	0	1	1	1	1	0	
Deletion Peak 24	11q24.3 	chr11:111284647-135006516(probes 1040178:1055983)	chr11:130090905-130190620(probes 1053486:1053528)	chr11:130134442-130192973(probes 1053504:1053532)	0.076564	   0.074113		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	1	1	0	0	1	0	1	1	0	1	1	0	0	0	1	0	0	0	0	1	0	1	1	0	1	0	0	1	0	0	1	1	0	1	1	0	0	1	0	0	1	1	0	0	1	1	1	0	1	1	1	0	1	1	0	1	0	
Deletion Peak 25	12q12   	chr12:1-133851895(probes 1055984:1129960)           	chr12:46309839-46387100(probes 1079441:1079476)    	chr12:46145501-46381205(probes 1079374:1079473)    	0.23041	    0.21926		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	0	0	1	0	0	0	1	1	0	1	0	0	0	1	0	0	0	1	0	0	0	0	1	1	0	0	1	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	
Deletion Peak 26	13q12.11	chr13:1-20527410(probes 1129961:1130328)           	chr13:19618141-19699289(probes 1130072:1130130)    	chr13:1-20535070(probes 1129961:1130330)           	0.013748	   0.013521		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	1	0	0	1	0	0	1	1	1	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	1	0	1	1	0	0	1	1	0	1	1	1	0	1	1	1	0	1	0	0	0	1	1	1	1	1	0	1	0	0	0	1	0	
Deletion Peak 27	15q13.1 	chr15:1-45658981(probes 1236097:1246716)           	chr15:28097279-31135788(probes 1238769:1238783)    	chr15:28482239-28488887(probes 1238777:1238778)    	0.17199	    0.17199		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	1	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	1	0	
Deletion Peak 28	16q23.1 	chr16:78129058-79627770(probes 1313869:1315233)    	chr16:78129058-79247026(probes 1313869:1314881)    	chr16:78531308-79113268(probes 1314282:1314708)    	4.5581e-16	 4.5581e-16		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	1	0	1	0	1	0	0	0	1	0	0	1	0	1	1	1	0	0	0	1	0	1	0	0	0	1	1	1	1	1	1	1	0	0	0	0	1	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	
Deletion Peak 29	17q25.3 	chr17:80404327-81195210(probes 1358157:1358453)    	chr17:80786416-80801903(probes 1358373:1358380)    	chr17:80423187-81195210(probes 1358166:1358453)    	0.026702	   0.025793		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	1	0	
Deletion Peak 30	18q12.2 	chr18:35235531-39060470(probes 1376706:1378984)    	chr18:36783539-37333360(probes 1377716:1377952)    	chr18:37108839-37114064(probes 1377835:1377836)    	0.026213	   0.043103		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	1	0	0	1	0	1	0	1	1	1	0	1	1	0	1	1	1	1	1	0	0	0	0	1	1	0	1	0	1	1	0	1	1	0	0	1	1	1	1	1	0	1	0	1	0	0	1	0	0	0	1	1	0	0	1	1	1	0	1	
Deletion Peak 31	18q21.2 	chr18:47918640-48705371(probes 1384615:1385252)    	chr18:48491525-48516520(probes 1385045:1385058)    	chr18:48111942-48658257(probes 1384779:1385214)    	0.0084404	   0.017175		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	1	0	1	0	1	1	0	1	0	1	1	1	0	1	1	0	1	1	1	1	1	0	1	0	0	1	1	0	1	0	1	1	0	1	1	0	0	1	1	1	1	1	0	0	0	1	0	1	1	0	0	0	1	1	0	0	1	1	1	1	1	
Deletion Peak 32	19p13.3 	chr19:1-3363200(probes 1401140:1401863)               	chr19:1280660-1338236(probes 1401318:1401319)        	chr19:1-3329808(probes 1401140:1401851)               	0.0053004	  0.0055103		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	1	1	0	1	1	1	1	0	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	0	0	0	1	1	0	1	1	0	0	0	1	1	1	0	1	0	1	0	1	1	0	0	1	0	0	1	0	1	1	0	
Deletion Peak 33	19q13.31	chr19:42754638-46149617(probes 1418563:1419898)    	chr19:45009978-45042764(probes 1419454:1419466)    	chr19:44066370-46154731(probes 1418824:1419900)    	0.027591	   0.025793		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	1	1	0	0	1	1	1	0	1	1	0	1	1	1	0	0	0	1	0	0	0	0	1	1	0	
Deletion Peak 34	20p12.1 	chr20:14302876-16252980(probes 1433897:1435086)    	chr20:13965126-16036135(probes 1433731:1434867)    	chr20:15466331-15467187(probes 1434300:1434301)    	0.00791	  0.0079369		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 35	21q22.12	chr21:36154821-37095653(probes 1475579:1476343)    	chr21:36190601-36267417(probes 1475599:1475643)    	chr21:36215172-36256307(probes 1475617:1475641)    	0.077405	   0.074113		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	1	1	0	1	1	1	0	1	0	1	0	1	1	1	0	1	1	1	0	1	1	0	1	1	0	0	1	0	1	1	1	1	1	1	1	1	0	0	1	1	0	0	1	0	0	0	1	0	0	0	1	0	0	1	0	0	1	1	0	1	1	
Deletion Peak 36	22q11.1 	chr22:1-22114035(probes 1482986:1483758)           	chr22:1-17752793(probes 1482986:1483168)           	chr22:1-17990605(probes 1482986:1483315)           	0.17292	    0.17292		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	1	1	0	1	0	1	1	1	0	0	1	0	0	1	0	1	1	0	0	0	1	0	1	0	1	1	1	1	1	0	0	1	1	0	0	1	0	1	0	1	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 37	Xp22.2  	chrX:13790334-14026603(probes 1503864:1504028)      	chrX:13790530-13966644(probes 1503865:1503981)      	chrX:13880100-13881471(probes 1503924:1503925)      	0.053869	    0.10594		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	0	0	0	1	0	1	1	0	1	0	0	0	1	1	0	1	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	1	0	0	1	1	0	0	0	0	1	1	1	1	0	0	1	0	0	0	0	1	0	1	1	
Deletion Peak 38	Xp21.1  	chrX:30870233-32665140(probes 1512482:1513515)      	chrX:30870233-34033668(probes 1512482:1513738)      	chrX:32077135-32079659(probes 1513111:1513112)      	3.5786e-07	 6.8759e-07		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	1	1	0	0	0	1	0	1	1	0	1	0	0	0	1	1	0	1	1	0	0	0	1	1	1	0	1	1	0	0	0	0	0	0	0	1	0	1	0	0	1	1	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	1	0	1	1	
Deletion Peak 39	Xp11.3  	chrX:44702452-45008304(probes 1518596:1518718)      	chrX:44729401-44977416(probes 1518606:1518705)      	chrX:44773273-44872951(probes 1518619:1518664)      	0.00098531	  0.0043913		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	1	0	1	0	1	0	1	1	1	1	0	0	0	1	1	0	1	1	0	0	0	1	1	1	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	1	1	0	0	0	1	1	1	1	1	0	0	1	0	0	1	0	1	0	1	1	
Deletion Peak 40	Xq21.33 	chrX:96134519-98718611(probes 1536600:1538025)      	chrX:95939207-96856298(probes 1536496:1536963)      	chrX:96327240-96328681(probes 1536730:1536731)      	0.034339	   0.034339		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	1	0	0	1	1	0	1	0	0	0	0	1	
Amplification Peak  1 - CN values	1p34.2  	chr1:39565350-42557010(probes 19167:20782)      	chr1:40284188-40567133(probes 19477:19638)      	chr1:39568931-40571711(probes 19168:19641)      	0.078442	   0.078442		Actual Copy Change Given	-0.32403	-0.53977	0.049548	0.20763	0.039988	0.066229	-0.2319	-0.46855	-0.0011519	-0.14456	0.19744	-0.0034627	0.069956	0	0.036088	-0.29023	-0.045093	-0.0080129	-0.20124	-0.19754	-0.23745	-0.31984	0.027993	0.022777	-0.032178	0.34875	0.12152	-0.049965	0.027919	2.1465	-0.046583	0.029747	-0.17221	-0.10095	0.88566	-0.13729	0.21906	-0.42976	0.41965	0	0.0082312	-0.0098185	-0.0076101	-0.12434	0.73884	-0.037354	0	3.6569	0.1428	-0.018153	0.049853	-0.091155	-0.058506	-0.00046674	0.012065	-0.042183	-0.013402	3.6569	0.0041632	0.15009	-0.03095	-0.26288	-0.035738	
Amplification Peak  2 - CN values	1q42.3  	chr1:120397781-249250621(probes 67746:129188) 	chr1:235125867-235243586(probes 121309:121315)	chr1:234930172-235527646(probes 121160:121415)	0.1109	     0.1109		Actual Copy Change Given	0.045453	0.51059	0.26621	0.027778	0.35141	0.43022	0.93162	-0.14554	-0.0011519	0.67671	0.27319	0.1114	0.55484	0	0.00356	0.53186	0.046559	0	0.089272	-0.19754	0.69964	0.015308	0.6495	0.024881	-0.82187	0.99279	1.1033	-0.051555	0.69447	0.50939	0	0.091155	0.40544	0.00073273	0.057368	0.4463	0.5231	3.6569	1.3792	0.018481	0.0044763	-0.38817	0.0066653	0.036935	0.45647	0.67474	1.4152	0.2839	-0.0083005	-0.88062	0.011351	0.29872	0.28644	-0.0010313	0.012065	-0.038707	0.60991	0.14087	0.56152	1.0629	0.3766	0.17242	0.0098497	
Amplification Peak  3 - CN values	2q14.2  	chr2:122266853-122371509(probes 193064:193099)	chr2:122268229-122371437(probes 193065:193098)	chr2:122254958-122706433(probes 193061:193281)	0.0097512	  0.0097512		Actual Copy Change Given	-0.036216	0.95365	-0.096537	0.015308	0.4826	-0.14232	-0.047124	0.095363	0.0020805	-0.34382	0.0055819	0	0.27332	0.021247	0.0037465	0.13243	0.01641	0.2601	0.16145	0.096816	0.071104	0.047836	0.44833	0.0071343	0.018442	0.63989	-0.0060904	0.13362	0.0049963	2.9314	0.0068044	-0.12577	-0.045708	0	-0.0071958	0.72565	0	0.33341	-0.073202	0.055658	-0.0019047	-0.035857	0.2456	0.1583	0	0.028481	-0.023017	0.23705	2.5353	-0.9649	0	1.4259	0.029888	-0.0071958	-0.0023553	0.33698	0.0068044	-0.014641	2.1702	0.02525	-0.014366	2.6518	0	
Amplification Peak  4 - CN values	3q26.2  	chr3:153593438-198022430(probes 344756:366959)	chr3:168783201-168843589(probes 352095:352135)	chr3:140611015-198022430(probes 338071:366959)	3.3383e-07	 3.3383e-07		Actual Copy Change Given	0.86235	0.68775	0.12444	1.0934	0.3344	0.37331	1.5779	0.6554	0.00013863	0.95993	1.001	0.53415	0.41915	-0.064556	0.9709	1.0521	-0.015879	0.45863	0.096538	0.60684	-0.065179	0.024127	-0.44823	-0.014452	0.011818	1.7249	0.66974	0.18268	1.3652	1.6323	0.46776	0.063609	0.055943	0.58673	0.38998	-0.53348	0.95201	1.4486	1.5895	0.82725	0.54605	0.42939	0.20076	0.79549	0.54236	0.040292	0.72466	0.68161	0.01447	2.6888	0.77776	1.2136	0.83713	1.9718	0.38023	0.77146	0.59836	1.3753	1.6188	0.7457	2.1136	3.6569	0.051796	
Amplification Peak  5 - CN values	5p15.33 	chr5:1-3266759(probes 469750:471053)               	chr5:1020355-1344354(probes 469800:469820)        	chr5:1-3268905(probes 469750:471055)               	0.011559	   0.011559		Actual Copy Change Given	0.63622	-0.54927	0.085771	-0.039258	0.20282	0.47856	0.26577	-0.51088	0.0012481	1.7086	-0.32075	1.039	0.61027	0.14028	-0.42276	0.25433	0.4158	2.3264	0.10541	-0.18898	-0.15962	-0.33272	0.45428	1.5814	0.0375	1.1041	-0.04726	-0.24216	0.15397	-0.046312	1.5208	-0.11822	0.31209	0.5685	3.5213	0.039902	0.25621	0.62588	-0.029311	0.056228	-0.00010346	0.47615	0.08739	0.76159	0.28813	1.3519	-0.90952	0.12402	0.24871	0.90915	0.41566	-0.036252	0.050677	0.58987	0.6108	0.96154	0.741	2.9709	0.67382	1.6243	1.3191	1.0608	-0.29852	
Amplification Peak  6 - CN values	6p21.1  	chr6:43582177-43996355(probes 596033:596255)    	chr6:43716617-43756051(probes 596095:596106)    	chr6:42880938-44405252(probes 595696:596489)    	0.0017195	  0.0024554		Actual Copy Change Given	-0.31377	-0.04633	0.032398	-0.0016629	0.054879	0	0.0050867	1.0973	0.0013868	-0.39025	0.0034978	0.01433	-0.2062	-0.18174	0.15823	-0.03245	0	-0.47315	0.07815	0.097202	0	-0.31529	0.022444	-0.00091866	0.0351	0.33301	3.6569	-0.011749	2.5935	2.9174	-0.26347	0.89708	0.032422	0.016884	0.69858	0.056798	0.085677	0.31851	0.37183	-0.034904	-0.45915	0.47426	-0.0011087	-0.044009	1.0207	0.0026357	0.7512	-0.26023	0.14073	0.027029	0.012405	0.39413	-0.098418	-0.0095426	0.0095883	0.0051997	0.0037465	2.3908	0.40527	0.058509	-0.0073339	0.071535	0.023268	
Amplification Peak  7 - CN values	6q12    	chr6:65318771-65423033(probes 605652:605705)    	chr6:65319967-65327563(probes 605653:605653)    	chr6:65319967-65423477(probes 605653:605707)    	0.12313	    0.15862		Actual Copy Change Given	-0.31377	-0.46334	0.6097	-0.0016629	-0.070866	0	0.0050867	0.35055	0.0013868	0.042678	-0.0040033	0.01433	-0.2062	-0.18174	0.15823	-0.03245	0	-0.0019989	0.10424	0.097202	0	0.061508	0.022444	-0.026058	0.0351	-0.016166	2.2044	-0.011749	-0.011198	0.67864	-0.26347	-0.05442	0.032422	0.016884	0.69858	0.056798	0.085677	0.31851	0.51542	0.07369	0.0051711	0.097252	-0.0011087	2.8306	-0.09912	0.0026357	-0.046091	2.353	-0.1143	0.027029	-0.2649	-0.413	-0.098418	-0.0095426	0.0095883	0.0051997	0.0037465	0.78775	0.40527	-0.3289	0.59908	-0.83817	0.61134	
Amplification Peak  8 - CN values	7p11.2  	chr7:54815172-55715052(probes 699044:699797)    	chr7:55221656-55507579(probes 699474:699679)    	chr7:52771343-57921703(probes 697793:700218)    	1.4516e-06	 1.7042e-06		Actual Copy Change Given	0.045178	0.36949	0.94299	-0.005814	-0.37814	0.41195	0.39928	0.060508	0.001803	2.2388	0.32627	0.21223	0.23867	0.22669	0.41563	0.28248	2.2053	0.4447	0.058224	0.68695	0.74404	0.3395	0.9775	-0.0057626	3.6569	0.41394	1.2297	0.13495	0.019643	0.60395	1.1048	0.39861	0.69627	0.14418	0.65263	0.055515	0.20641	0.27726	-0.6194	0.046133	0.0173	0.38961	-0.010094	0.39712	-0.049114	0.76312	3.6569	0.76274	0.39662	3.6569	0.41165	0.39413	3.6569	1.7058	0.037924	0.65411	3.6569	-0.032041	0.077286	1.3994	0.003191	0.25386	0.017107	
Amplification Peak  9 - CN values	7q21.2  	chr7:91842993-93671906(probes 713115:714298)    	chr7:92445481-92459416(probes 713558:713569)    	chr7:84182369-109072928(probes 710028:722252)  	5.2971e-07	 6.0077e-07		Actual Copy Change Given	0.053521	1.2825	-0.14839	-0.005814	0.3904	2.0869	0.042166	0.64121	0.001803	0.31348	0.99742	-0.2066	0.23867	0.22669	0.40794	0.28248	0.36526	0.0018826	0.058224	0.65026	-0.20273	0.3395	0.9559	-0.0057626	0.049966	2.209	1.3122	0.13495	0.019643	0.6779	0.13806	0.39861	0.67287	2.1697	3.6569	0.055515	0.17293	0.27726	0.9302	0.04259	0.01283	1.2001	0.56205	0.87888	0.6089	0.78074	0.35865	-0.2192	2.9273	3.6569	1.9324	0.41237	1.3316	1.2007	0.0075	0.36468	0.71979	0.60539	0.077286	-0.33479	0.0066653	0.23318	-0.54523	
Amplification Peak 10 - CN values	8p11.21 	chr8:41578578-42518767(probes 772172:772779)    	chr8:42022960-42133101(probes 772429:772487)    	chr8:41343376-42521400(probes 772037:772781)    	0.012626	   0.012626		Actual Copy Change Given	0.56681	1.0363	-0.31869	2.458	-0.41074	-0.16891	1.7371	0.55927	0.0012481	-0.11866	0.32869	-0.082269	-0.18534	0.20733	1.4155	0.21637	2.0778	-0.49605	0.085799	0.091749	0.30745	0	-0.46003	0.83951	-0.22613	0.26042	0.78949	0.16835	-0.0067813	-0.061958	0.38684	0.013213	0.33415	-0.0010693	0.42715	0.77003	-0.53571	0.17464	0.36461	-0.74229	-0.45417	-0.050776	1.1621	-0.0696	0.22926	0.74423	0.58195	-0.27296	0.54775	3.6569	-0.011996	-0.047531	0.5359	2.5672	-0.30803	0.33745	0.0094491	0.71058	0.3743	-0.34171	-0.7317	-0.32843	0.017107	
Amplification Peak 11 - CN values	8q24.21 	chr8:128024202-128992643(probes 819257:819926)	chr8:128198180-128307796(probes 819369:819449)	chr8:98704076-146364022(probes 802029:829750)  	1.1393e-12	 1.1393e-12		Actual Copy Change Given	0.60611	1.0609	0.47611	0.18313	0.34836	0.63463	0	3.6569	0.0012481	3.6569	0.30978	1.0874	-0.17961	2.4248	1.4733	0.21637	0.67474	2.0244	-0.017254	0.1673	-0.11713	-0.0081624	3.3004	0.85173	3.6569	0.26042	1.4143	0.15382	-0.0067813	1.8597	0.38684	0.57541	0.32028	-0.0010693	0.53081	0.19878	1.0111	0.79975	1.9386	0.84297	0.44465	1.1464	1.0853	1.2112	0.9202	1.451	2.6511	0.37362	0.57701	0.1382	1.5715	1.1815	0.60919	1.5635	3.2013	0.85254	0.013026	1.3992	0.3408	1.0801	0.91845	0.83825	0.021726	
Amplification Peak 12 - CN values	10p11.21	chr10:35335459-35408297(probes 921886:921907)  	chr10:35338674-35404274(probes 921887:921906)  	chr10:35166628-35623783(probes 921878:921965)  	0.043206	   0.043206		Actual Copy Change Given	-0.32774	0.029747	-0.188	-0.005261	0.040544	0.001803	-0.12148	0.045991	-0.0024938	-0.36254	-0.010203	-0.25062	-0.43201	0.58256	-0.01037	3.6569	0.38296	-0.47928	0.097688	-0.19475	0.49165	-0.31786	0.25137	0	-0.0027707	-0.023577	0.0076301	-0.043737	0.019643	-0.03643	3.4487	0.054091	-0.20871	-0.0016234	-0.030131	0	-0.13484	0.024127	0.84962	-0.00097017	-0.0053642	-0.41344	3.2554	1.0884	0.22602	0.70232	-0.41304	0.30889	-0.0042451	0.022444	0.40031	-0.020687	0.06537	0.58435	0.023706	0.65835	-0.044551	-0.70091	-0.0085766	-0.34712	-0.70962	-0.321	0.00082348	
Amplification Peak 13 - CN values	11p13   	chr11:32912175-37667461(probes 999454:1002303) 	chr11:35244059-35263023(probes 1000993:1001007)	chr11:34798611-36028757(probes 1000546:1001626)	0.022421	   0.025349		Actual Copy Change Given	0.048262	0.019643	-0.14222	0	-0.39758	0.040044	-0.029857	0.079303	-0.0051227	0.12029	-0.00038689	-0.035312	-0.23447	-0.10105	-0.020687	-0.22133	0.57469	-0.051524	0.27609	0.10439	0.042166	-0.32809	0.41982	-0.013689	0.0062012	0.19639	0.38734	0	-0.69269	-0.022744	-0.12147	0.020903	0.66604	0.28759	0.062794	-0.048954	-0.5164	0.14637	-0.099736	-0.72623	-0.44736	-0.40926	3.6569	-0.19675	1.214	-0.068663	3.6569	-0.22108	-0.15962	-0.93975	0.46113	-0.41487	-0.18232	-0.010817	0.85938	-0.36319	0.018663	-0.010922	0.1076	0.36248	2.2425	-0.30802	0.020465	
Amplification Peak 14 - CN values	11q13.3 	chr11:69838585-70248899(probes 1015334:1015566)	chr11:69940436-69993573(probes 1015406:1015436)	chr11:67137947-74637634(probes 1014241:1017832)	5.7709e-50	 5.7709e-50		Actual Copy Change Given	3.6569	0.019643	3.6569	2.1881	0.0035432	2.583	3.6569	0.079303	-0.0051227	-0.080725	3.6569	-0.035312	3.6569	-0.10105	-0.020687	3.6569	0.98059	0.39605	0.27609	0.10439	0.11741	0.19381	0.6703	0.0088045	0.0062012	3.6569	-0.0084385	-0.026612	-0.69269	1.0525	-0.12525	0.34567	0	3.6569	0.09275	-0.048954	3.6569	1.6385	-0.12797	3.6569	3.4571	-0.0099565	-0.051451	3.6569	0.1677	-0.068663	3.6569	2.4679	0.60774	3.6569	2.096	3.6569	3.6569	3.6569	3.6569	3.6569	3.6569	-0.010922	0.1076	3.6569	-0.067213	3.5217	-0.026321	
Amplification Peak 15 - CN values	12p13.33	chr12:1-1071814(probes 1055984:1056062)           	chr12:1-1037228(probes 1055984:1056045)           	chr12:1-1866203(probes 1055984:1056190)           	0.034639	   0.056185		Actual Copy Change Given	-0.32484	1.1645	0.044266	0.20213	1.1021	0.040751	0.47187	-0.47258	-0.00027724	0.28733	-0.0067525	-0.23594	1.2628	-0.0020784	-0.20871	0.71227	0.031295	0.40587	3.6569	0.10162	0.071966	0.021043	-0.39608	1.6118	0.019363	0.28531	-0.005261	0.21668	-0.66919	-0.65006	0.70401	-0.15656	-0.51208	0.015766	-0.10487	0.0416	1.974	0.53678	0.43648	-0.74011	0.00062873	1.3922	-0.38089	0.52818	0.51903	-0.051377	0.69123	0.11624	0.0051359	0.022444	0.87432	0.45241	-0.078278	1.1956	-0.097363	0.31923	3.6569	-0.0018014	0.13125	1.0477	0.62557	0.26404	-0.58815	
Amplification Peak 16 - CN values	12p12.1 	chr12:24880663-25784000(probes 1070061:1070588)	chr12:24885718-25556703(probes 1070062:1070409)	chr12:24885718-25789332(probes 1070062:1070590)	0.094742	    0.14487		Actual Copy Change Given	-0.30512	1.1645	0.044266	0.046905	1.1155	0.50122	0.47187	3.6569	-0.00027724	0.27153	0.014359	-0.23031	1.2628	0.066658	-0.20871	0.71227	0.019363	0.40587	-0.48628	0.10162	0.071966	0.0046276	-0.39608	1.5736	0.019363	0.28531	0.65645	0.27695	-0.67729	-0.57782	0.097833	-0.24655	3.6569	1.2186	-0.10487	0.0416	2.2741	0.53678	0.44918	3.6569	0.00062873	1.2027	0.11469	0.52818	0.51903	-0.0528	0.69123	0.11624	0.01433	0.022444	0.39118	0.02287	0.35316	1.1805	-0.097363	0.35895	0.67994	-0.021307	0.13125	1.0477	0.74176	0.26875	0.0092925	
Amplification Peak 17 - CN values	14q22.1 	chr14:51753294-51904951(probes 1202658:1202776)	chr14:51753550-51903438(probes 1202659:1202775)	chr14:51693655-51942581(probes 1202634:1202809)	0.036054	   0.036054		Actual Copy Change Given	0.046417	-0.43659	0.37016	0.20523	0.035176	0.05637	0.10994	0.030732	0.00083195	0.080401	-0.054527	0.00081487	-0.55076	0.18874	0.39413	-0.11926	-0.13975	1.3195	-0.47976	-0.19673	-0.10395	-0.32124	-0.090493	0.015918	0.019938	-0.073888	-0.018216	0.066515	0.03863	-0.013815	0.34958	0.073546	0.039619	-0.11139	0.55319	0.084498	-0.52522	0.17091	2.8878	0.019083	0.016461	0.79258	0	0	0.168	0.39413	0.75235	-0.17196	0.29199	0.0051035	0.37417	0.098997	0.49632	1.1549	0.33286	0.041382	0	3.6569	-0.03817	0.17317	-0.00097017	3.5083	-0.55217	
Amplification Peak 18 - CN values	17q12   	chr17:37737138-37930169(probes 1336638:1336748)	chr17:37737580-37929558(probes 1336639:1336747)	chr17:37449390-38356814(probes 1336515:1336912)	3.7335e-05	 9.2391e-05		Actual Copy Change Given	0.0020573	0.45275	0.043982	-0.058596	-0.0049344	0.02806	0.06537	-0.016292	-0.0027707	0.23886	0.12391	-0.49986	-0.196	0	0.46622	0.23226	0.5763	-0.0049786	-0.0087146	0.10351	0.097466	0.03686	0.0044411	0.046611	-0.048748	-0.0196	0.55992	0.12602	0.067518	2.6952	-0.083598	1.9049	0.089996	3.6569	3.6569	-0.091023	-0.48733	-0.017529	2.2969	-0.096836	-0.0052259	-0.017803	-0.0095426	0.28675	0.53434	0.58404	0.7286	0.012376	0.065083	-0.067056	-0.37907	0.33221	0.11908	0.48984	-0.026851	-0.031434	0.99779	0.010424	0.014051	0.036794	-0.051586	-0.29804	3.6569	
Amplification Peak 19 - CN values	17q24.3 	chr17:66293985-70596221(probes 1351058:1354155)	chr17:67413117-67669243(probes 1351788:1351945)	chr17:67311149-68706022(probes 1351733:1352673)	0.043206	    0.10467		Actual Copy Change Given	0.0020573	0.45275	0.043982	-0.058596	-0.0049344	0.02806	0.65866	-0.016292	-0.0027707	0.23886	0.12391	0.27048	-0.196	0	0.46622	0.30473	0.63408	-0.01167	0.072971	0.10351	0.060936	3.6569	1.4448	0.046611	1.6399	-0.0196	0.56187	0.12602	0.067518	0.5865	-0.083598	0.030732	0.089996	0.81928	-0.26348	-0.05948	0.33238	-0.017529	-0.11678	-0.0079834	-0.0052259	0.38998	-0.0018014	0.28675	0.56733	-0.074277	0.29734	-0.036129	0.065083	1.0474	0.154	0.33221	0.11908	0.51819	-0.046854	0.019707	-0.029175	0.8705	0.014051	0.036794	-0.051586	0.26394	-0.010939	
Amplification Peak 20 - CN values	18p11.32	chr18:1-2081265(probes 1358454:1358962)           	chr18:985109-1075852(probes 1358578:1358629)      	chr18:1-2087487(probes 1358454:1358964)           	0.030021	   0.030021		Actual Copy Change Given	-0.16001	0.041175	-0.22554	0.0087528	-0.39913	-0.089552	0.084643	0.047694	-0.0023553	1.6027	-0.016845	-0.24204	-0.49507	0.20687	-0.47818	-0.16879	-0.44084	0.39256	0.37397	-0.51012	-0.53713	-0.33399	-0.11241	-0.014865	-0.061017	0.36279	0.056228	0.32382	-0.70845	0.65093	3.5643	0.017264	0.70983	0.042065	0.21914	-0.03054	-0.10132	-0.26829	-0.072007	0.036794	-0.44972	0.44172	0.38056	-0.049559	1.1759	3.6569	3.6569	0.38733	0.1673	0.77252	-0.40416	-0.033787	0.30425	0.57723	0.0052749	0.014394	0.0091705	-0.0077482	0.11418	0.40161	0.75032	-0.29438	0.044273	
Amplification Peak 21 - CN values	18q11.2 	chr18:20863588-22012348(probes 1367761:1368450)	chr18:20864023-20890717(probes 1367762:1367777)	chr18:19404300-22736415(probes 1366946:1369017)	0.00032725	 0.00032725		Actual Copy Change Given	0.61426	0.041175	-0.22554	0.0087528	-0.40126	-0.089552	3.5274	-0.46727	-0.0023553	-0.36083	-0.0070288	-0.24204	-0.49507	-0.18597	0.39761	-0.16879	1.3792	-0.04176	0.37397	1.412	-0.26131	2.9861	-0.11241	-0.014865	-0.061017	0.011946	1.32	0.46161	-0.7019	-0.015466	2.5703	0.017264	-0.56077	0.042065	0.075415	-0.03054	-0.10132	0.32109	-0.03245	0.036794	0.018698	-0.41124	-0.36533	-0.049559	-0.046762	-0.0069195	-0.031902	-0.24387	0.1673	0.024127	-0.40059	-0.033787	0.30425	2.8943	0.0052749	0.014394	0.0091705	-0.0077482	0.78138	-0.36703	0.00013863	2.4847	-0.49935	
Amplification Peak 22 - CN values	19p13.2 	chr19:7296453-7398264(probes 1403166:1403173)    	chr19:7300056-7397014(probes 1403167:1403172)    	chr19:7300056-7405648(probes 1403167:1403175)    	0.004154	   0.004154		Actual Copy Change Given	-0.021362	0.37907	0.073233	-0.016979	-0.16783	2.6784	0.024408	-0.49809	-0.0081949	-0.1336	1.2621	-0.48229	-0.74647	0.13613	-0.28396	0.074984	-0.079077	0.46051	0.013353	-0.22256	-0.22773	-0.0094046	-0.47881	0.082652	-0.093535	-0.13896	-0.060345	-0.344	-0.62312	-0.66836	0.15188	0.65075	0.057226	0.018958	-0.0067813	-0.159	-0.47194	0.24653	-0.19662	-0.16026	-0.094294	1.4297	-0.048207	-0.12875	-0.13152	-0.16307	0.67876	-0.28013	-0.018078	-0.1092	2.5625	-0.15656	2.0354	-0.029857	-0.066654	3.6569	-0.097363	0.031577	-0.15046	0.13184	-0.11077	-0.31856	-0.079731	
Amplification Peak 23 - CN values	19p13.11	chr19:18408223-21249332(probes 1408192:1408802)	chr19:19601226-19604323(probes 1408669:1408669)	chr19:19601226-19611267(probes 1408669:1408672)	0.20438	    0.20438		Actual Copy Change Given	-0.021362	0.37907	0.039165	-0.016979	-0.16783	-0.020865	0.024408	-0.49809	-0.0081949	0.91251	-0.36678	0.0012481	0.16295	0.13613	-0.28396	0.074984	0.029888	-0.46764	0.034818	-0.2159	-0.22773	-0.0094046	0.80461	0.048314	-0.093535	-0.13896	3.1447	0.87488	-0.62312	1.022	0.15188	-0.35248	0.057226	0.018958	-0.0067813	-0.159	0.26357	0.24653	1.6561	-0.16026	-0.094294	-0.049965	-0.048207	-0.12875	0.34887	-0.16307	0.63274	0.003191	-0.018078	-0.1092	-0.37445	-0.15656	-0.16447	-0.029857	-0.066654	-0.13206	-0.097363	0.031577	-0.030131	0.023386	1.3592	0.20748	-0.079731	
Amplification Peak 24 - CN values	19q12   	chr19:29460241-34309276(probes 1411060:1414422)	chr19:31334191-31372778(probes 1412445:1412483)	chr19:30458486-31412031(probes 1411852:1412510)	0.078442	   0.078442		Actual Copy Change Given	0	0.37907	0.039165	-0.016979	-0.16783	-0.020865	0.024408	0.30937	-0.0026322	-0.11631	-0.040452	0.0012481	0.28226	0.13613	-0.28396	0.074984	0.029888	-0.93278	0.034818	0.40878	0.58614	-0.0094046	0.39944	0.048314	-0.093535	-0.13896	1.231	0.73379	-0.62312	2.3075	0.15188	1.4335	0.057226	0.018958	-0.0067813	-0.159	0.26812	0.24653	1.0804	-0.16026	-0.094294	-0.049965	3.0221	-0.12875	-0.11748	0.63161	-0.19642	1.2659	-0.018078	-0.1092	-0.37445	-0.15656	-0.42233	0.53099	0.25298	0.15658	-0.097363	0.031577	-0.030131	0.023386	-0.11913	-0.37853	-0.079731	
Amplification Peak 25 - CN values	Xp11.4  	chrX:40732423-40742477(probes 1516899:1516907)  	chrX:40732510-40742181(probes 1516900:1516906)  	chrX:40732510-40746768(probes 1516900:1516909)  	0.10066	    0.10066		Actual Copy Change Given	-0.14451	-0.55547	-0.40608	-0.39004	-0.0639	0.033549	0.016919	-0.2589	0.00597	-0.47082	-0.36031	-0.040616	-0.29142	0.013401	0.11404	0.050108	-0.29296	-0.23526	3.6569	-0.32158	-0.10276	-0.055903	0.046559	0.15404	-0.18081	-0.33988	-0.43734	-0.036538	-0.16547	0.10921	0.2456	0.017404	-0.015054	0.010486	0.42603	-0.016774	-0.0083005	-0.64684	0.090285	-0.59614	-0.082767	0.028341	-0.48008	-0.52444	0.30724	-0.010922	0.15237	3.0061	-0.32469	-0.22418	-0.48542	-0.24326	0.089416	0.25636	-0.18068	3.6569	-0.059269	0.96206	-0.058196	-0.36646	-0.022058	-0.13626	-0.13705	
Deletion Peak  1 - CN values	1p36.13 	chr1:1-66844528(probes 1:35836)                      	chr1:17861406-18026003(probes 7623:7705)            	chr1:17937648-17946182(probes 7665:7666)            	0.17199	    0.18877		Actual Copy Change Given	-0.37279	-0.53977	0.049548	0.20763	0.039988	0.066229	-0.2319	-0.46855	-0.0011519	-0.15033	0.19744	0.51316	0.069956	0	0.036088	-0.29023	-0.045093	-0.45591	-0.51321	-0.19592	-0.23745	-0.31984	0.027993	0.022777	-0.032178	0.34875	0.12152	-0.049965	0.027919	-0.083333	-0.34504	-0.035176	-0.78488	-0.10095	-0.26468	-0.19721	0.21906	-0.42976	0.38452	0	0.0082312	-0.0098185	-0.020824	-0.12434	0.18339	-0.037354	0.16484	0.047836	0.1428	-0.018153	0.049853	-0.091155	-0.058506	-0.00046674	0.012065	-0.042183	-0.013402	0.019288	0.0041632	-0.058193	-0.083598	-0.26288	-0.035738	
Deletion Peak  2 - CN values	1p13.2  	chr1:95930119-149882013(probes 53472:67827)        	chr1:114417343-114525573(probes 63975:64028)      	chr1:104850769-149881397(probes 58456:67826)      	0.0049153	   0.005969		Actual Copy Change Given	-0.32403	-0.4816	0.17157	0.027778	-0.37363	0.066229	-0.2319	-0.27055	-0.0011519	-0.39979	0.29584	-0.49413	0.021195	0	0.00356	-0.29023	-0.016017	-0.0080129	-0.18923	-0.19754	0.021399	-0.66432	-0.44964	0.022777	0.051245	0.34875	0.18813	-0.049965	0.025515	-0.0036011	0	0.035964	-0.21651	-0.10095	-0.38437	-0.13729	0.21906	-0.50588	0.44732	0.00041593	0.0021157	0.016565	1.031	0.010564	0.085752	0.021744	0	-0.26059	0.15397	0.040185	-0.38826	-0.011749	-0.058506	-0.62274	0.012065	0	0.00055459	-0.70109	0.0041632	0.15009	0.18558	-0.85583	-0.53612	
Deletion Peak  3 - CN values	1q44    	chr1:178641946-249250621(probes 85403:129188)     	chr1:245911868-247052144(probes 128533:128759)    	chr1:246037293-246037919(probes 128647:128648)    	0.18271	    0.18271		Actual Copy Change Given	0.045453	0.51059	0.26621	0.027778	0.36207	0.066515	0.93162	-0.14554	0.0063871	0.64959	0.27319	0.75509	0.52433	0	0.00356	0.53186	0.21945	0	0.089272	-0.16637	0.69964	0.015308	0.6495	0.83121	-0.82187	0.92248	1.1033	-0.3112	0.69447	-0.0099565	-0.054151	0.047836	0.40544	0.00073273	0.057368	0.4463	0.44801	-0.27464	1.3792	-0.01772	-0.0072429	-0.38817	0.0066653	0.036935	0.45647	0.67474	1.4152	0.2839	-0.037343	-0.88062	0.76949	0.29872	0.28644	-0.039801	-0.32368	-0.038707	0.60991	0.11565	0.56152	1.042	0.3766	0.17242	0.0098497	
Deletion Peak  4 - CN values	2q22.1  	chr2:139655617-143637838(probes 201402:203831)    	chr2:140976294-142894275(probes 202124:203394)    	chr2:141496270-142372239(probes 202437:202985)    	2.49e-08	 3.7472e-08		Actual Copy Change Given	-0.99318	1.0604	-0.40597	0.015308	-0.40931	-0.54007	-0.64085	0.095363	0.0020805	-0.22051	-0.41353	0	0.27332	-0.3617	-0.0067813	-0.73134	0.3512	0.31507	0.01422	-0.52696	0.071104	0.057796	0.44833	-0.037929	0.018442	0.63989	-0.0060904	0.13362	-0.00027724	1.2078	0.0068044	-0.12577	-0.045708	0	0.010564	-0.59273	0.0084522	0.33341	-0.077345	0.060079	-0.0019047	-0.016154	0.2456	0.15606	0	0.092605	-0.023017	0.33513	0	-0.91055	-0.053314	-0.066118	0.011958	0.0029133	0.002911	0.33698	0.0068044	-0.014641	-0.18358	0.02525	-1.2929	-0.43148	0.042007	
Deletion Peak  5 - CN values	2q34    	chr2:1-243199373(probes 129189:260545)               	chr2:213789275-213792626(probes 243105:243106)    	chr2:213429190-213939570(probes 242878:243222)    	0.17199	    0.23479		Actual Copy Change Given	0.011539	-0.12739	-0.1315	0.015308	-0.38599	-0.13549	-0.15707	0.10891	0.0020805	0.0085601	0.017433	-0.19562	0.26784	0.01433	0	-0.15042	-0.0011087	0.3002	0	0.072684	0.071104	0.057796	0.44662	-0.0034113	0.035555	-0.0070692	-0.0060904	0.12609	0.00069327	-0.015604	0.0068044	-0.14425	-0.03681	-0.0014849	-0.47512	-0.032175	-0.015879	-0.44264	-0.067726	-0.70478	0.00072844	-0.011749	0.34469	0.1498	-0.049874	0.096709	-0.43803	-0.25737	0	0.016705	-0.4211	0.36805	0.00068901	0.0029133	0.016286	0.33698	0.00013863	-1.2929	-0.18358	0.017172	0.077475	0.1664	0.020045	
Deletion Peak  6 - CN values	3p26.1  	chr3:1-14697947(probes 260546:268103)                	chr3:3911711-4396190(probes 261647:261648)            	chr3:3911711-4765092(probes 261647:261992)            	0.12287	    0.18342		Actual Copy Change Given	-0.70926	-0.45125	-0.44635	-0.21911	-0.40589	-0.17474	0.043582	-0.45719	0.00013863	-0.35477	-0.34053	-0.50277	-0.63632	0.023145	-0.13393	-0.30534	0.033831	-0.47357	-0.19212	0	0.014609	-0.32054	-0.45939	-0.012249	0.080312	-0.68934	1.0545	-0.23924	-0.68788	-0.016333	-0.4076	-0.33722	-0.60786	-0.0049451	-0.12395	0.044148	-0.54502	-0.42109	0.46127	0.046559	-0.43872	-1.2929	-0.36884	-0.51733	-0.22765	-0.77065	-0.058377	0.10701	-0.2906	-0.93828	-0.0006648	-0.42855	-0.32019	-0.6417	-0.30428	-0.37161	-0.71453	-0.036674	-0.53852	-0.34285	-0.69667	-0.32994	-0.56272	
Deletion Peak  7 - CN values	3p14.3  	chr3:53923579-55500153(probes 290099:291356)        	chr3:54150629-55115508(probes 290224:291014)        	chr3:54308103-54793449(probes 290361:290724)        	0.00065103	   0.023184		Actual Copy Change Given	-0.70926	-0.45125	-0.4366	-0.21911	-0.40589	-0.17474	-0.51311	-0.45163	0.00013863	-0.34577	-0.34053	-0.50277	-0.63632	-0.064556	-0.13393	-0.30534	-0.0089906	-0.48496	-0.48925	0	-0.42718	-0.32054	-0.45104	-0.0045181	-0.789	-0.68934	-0.0059522	-0.23753	-0.68788	-0.62741	0.42974	0.035947	0.055943	0.0046527	-0.12395	-0.53348	-0.54502	-0.42765	-0.094264	-0.79126	-0.45112	-0.41871	-0.37358	-0.52393	-0.60142	-0.75461	-0.014416	-0.29047	-0.2906	-0.92354	-0.79476	-0.42855	-0.32019	-0.64481	-0.31646	-0.37161	-0.71453	-0.021098	-0.52859	-0.34285	-0.69667	-0.31284	-0.54725	
Deletion Peak  8 - CN values	3p14.2  	chr3:59034763-61547330(probes 293457:294352)        	chr3:59702822-61238217(probes 293965:294166)        	chr3:61027858-63267571(probes 293971:295588)        	3.7964e-05	  0.0014958		Actual Copy Change Given	-0.70926	-0.45125	-0.4366	-0.21379	-0.40589	-0.17474	-0.52827	-0.45163	0.00013863	-0.34577	-0.34053	-0.51537	-0.63632	-0.064556	-0.13393	-0.30534	-0.43173	-0.48496	-0.48925	-0.68997	-0.12082	-0.32054	-0.45104	-0.0045181	-0.78058	-0.68372	-0.0059522	-0.23753	-1.2929	-0.62751	0.42974	0.049256	0.055943	0.0046527	-0.12395	-0.53348	-0.54502	-0.42765	-0.055364	-0.72558	-0.45112	-0.41871	-0.37358	0.35904	-0.9169	-0.75461	-0.0050353	-0.29047	-0.2906	-0.92354	-0.82878	-0.42855	-0.32234	-0.64481	-0.31646	-0.37161	-0.71453	-0.057116	-0.51938	-0.34285	-0.69667	-0.33468	-0.54725	
Deletion Peak  9 - CN values	3q11.1  	chr3:70016017-93778057(probes 300620:311493)        	chr3:90485637-93778057(probes 311481:311493)        	chr3:74611544-93740691(probes 303819:311484)        	0.034493	    0.18877		Actual Copy Change Given	0.84061	0.6618	0.12444	0.42284	0.3344	-0.17474	1.524	0.83707	0.00013863	1.0125	0.96771	0.012986	-0.63632	-0.064556	-0.13122	1.0521	-0.048748	0.45863	0.10512	0.0019397	-0.066654	-0.011426	-0.44823	-0.0045181	0.011818	1.5828	-0.0047079	0.18268	0.020343	0.023005	0.04954	0.063609	0.055943	0.0046527	0.38998	-0.53348	0.6831	0.52293	0.45207	0.81532	0.62501	0.39297	0.22746	0.35953	0.54236	0.035947	0.72747	0.084354	0.01447	-0.92354	0.75895	0.34634	0.24498	0.016425	0.38023	-0.35117	0.68887	0.59872	0.99821	-0.34285	-0.69667	-0.33468	0.052223	
Deletion Peak 10 - CN values	3q26.31 	chr3:173999806-175760559(probes 354919:355663)    	chr3:174575145-175760559(probes 355274:355663)    	chr3:174889888-174893774(probes 355469:355470)    	0.032299	   0.032299		Actual Copy Change Given	0.86235	0.68775	0.12444	1.0934	0.3344	0.37331	1.5779	0.6554	0.00013863	0.95993	1.001	0.53415	0.41915	-0.064556	1.1685	1.2994	-0.91266	1.3775	0.096538	0.60684	-0.065179	0.024127	-0.14592	-0.014452	0.011818	0.93975	-0.96287	0.18268	0.016985	-0.54391	1.5955	0.08551	0.063795	0.58673	0.38998	-0.51228	0.95201	1.4486	0.44613	0.82725	0.54605	0.42939	0.20076	0.87827	0.54236	0.040292	0.72466	0.31546	0.01447	2.6754	0.77776	1.2136	0.83713	1.8198	0.38023	0.77146	0.59836	1.3753	1.6188	-0.68761	2.1136	3.0873	0.051796	
Deletion Peak 11 - CN values	4p15.2  	chr4:1-36250854(probes 366960:388559)                	chr4:20727465-21952452(probes 379018:379939)        	chr4:21333113-21363640(probes 379479:379480)        	0.15467	    0.15467		Actual Copy Change Given	-0.31552	-0.46259	-0.14762	-0.36929	-0.0013739	-0.17537	-0.23985	-0.48355	-0.0036984	-0.34462	-0.0067525	-0.24521	1.1156	-0.17454	-0.02384	-0.038538	0.1595	0.45132	-0.17474	-0.84587	0.040468	-0.32405	0.0083389	-0.011698	-0.43918	-0.37303	0.74708	-0.35396	0	0.0090312	-0.27663	0.031295	-0.29922	-0.013313	-0.31225	-0.47025	0.21022	-0.43489	-0.63699	-0.71897	-0.45187	0.0027745	-0.012024	-0.40318	-0.054165	-1.2929	-0.059319	0.075847	-0.13871	-0.93282	-0.40576	-0.44642	-0.10618	-0.018902	0.012237	-0.3799	-0.73398	-0.057789	0.17226	-0.30651	0.2456	-0.86735	0.022567	
Deletion Peak 12 - CN values	4q22.1  	chr4:90844993-93240505(probes 416864:418021)        	chr4:91035787-92526033(probes 416911:417709)        	chr4:91162419-91991095(probes 416967:417466)        	1.0109e-07	 1.0109e-07		Actual Copy Change Given	-0.31552	-0.46259	-0.11419	0.20121	0.71087	-0.068663	-0.080807	-0.43615	0.0029133	-0.28684	0.0036366	-0.24521	0.45939	-0.17454	-0.02384	0.17046	0.035947	-0.91976	-0.17474	-0.20361	0.040468	-0.31891	0.041034	-0.011698	-0.073801	0.025659	-0.056307	-0.34228	0	-1.0857	-0.63225	-0.26768	-1.1553	-0.013313	-0.31225	-0.44728	0.06458	-0.413	-0.065716	-0.69251	-0.0092316	-0.40771	-0.022469	-0.42931	0.017918	-0.72659	-0.048786	-0.23361	0.0094962	-0.92507	-0.40714	0.034083	-0.10618	0.0026357	0.012237	-0.32013	0.11184	0.63262	-0.47438	-0.045291	-0.67481	-0.27488	0.032686	
Deletion Peak 13 - CN values	5q11.2  	chr5:58260298-59787985(probes 500841:501784)        	chr5:58260298-59787985(probes 500841:501784)        	chr5:58298361-59059492(probes 500875:501423)        	6.2463e-08	 1.6523e-06		Actual Copy Change Given	-0.70702	-0.4732	-0.42125	-0.039258	-0.41492	0.47856	0.26577	-0.48911	0.0012481	-0.29572	-0.32075	0.0090312	0.037567	0.14028	-0.46302	0.27963	0.16055	-0.44926	0.10089	-0.20796	-0.13975	-0.33272	-1.2929	-0.010319	-0.80194	-0.67399	-0.051316	-0.34159	-0.69804	-0.0049844	-0.65631	-0.12356	-0.24107	-0.0052216	-0.97025	0.039902	-0.14181	-0.4256	-0.081871	0.073833	-0.44829	0.020063	0.08739	-0.44566	-0.40996	-0.75739	-0.87645	-0.30616	-0.071472	-0.85686	0.39865	-0.40628	0.050677	0.004719	-0.29071	0.0067292	-0.71223	-0.03095	-0.53388	0.016845	-0.67279	-0.30616	-0.55798	
Deletion Peak 14 - CN values	5q12.3  	chr5:53178519-102400062(probes 497487:523460)      	chr5:65889312-66468313(probes 504896:505354)        	chr5:65080683-81771064(probes 504368:513503)        	0.007561	   0.074113		Actual Copy Change Given	-0.70702	-0.4732	-0.42125	-0.039258	-0.41492	-0.17018	0.26577	-0.48911	0.0012481	-0.35206	-0.32075	0.0090312	0.037567	0.081177	-0.46302	-0.014641	0.026233	-0.47294	0.0913	-0.20796	-0.18358	-0.31669	-0.4627	-0.010319	-0.80194	-0.67399	-0.061555	-0.34159	-0.69804	0.00097064	-0.65631	-0.13057	-0.24107	-0.0052216	-0.25067	-0.028355	-0.14181	-0.4355	-0.081871	-0.70298	-0.44829	0.020063	0.08739	-0.45276	-0.40996	-0.75739	-0.87645	-0.31767	-0.071472	-0.85686	0.39865	-0.40628	0.050677	0.004719	-0.29071	0.0067292	-0.7257	-0.03095	-0.53388	0.016845	-0.67279	-0.30616	-0.55798	
Deletion Peak 15 - CN values	6p25.3  	chr6:1608837-2252425(probes 570806:571226)            	chr6:1621405-2252425(probes 570809:571226)            	chr6:1716711-2259327(probes 570890:571230)            	0.00022848	 0.00022848		Actual Copy Change Given	-0.32996	-0.045228	0.032398	-0.0016629	0.054879	0	-0.60771	-0.49726	0.0013868	-0.35583	0.0034978	0.01433	-0.2062	-0.18174	-0.77464	-0.16717	0	-0.47801	0.09159	0.099288	0	-0.31529	0.022444	0.0072735	0.0026135	0.33301	-0.74037	-0.16632	-0.69785	-0.62541	-0.26347	0.46766	0.03637	0.067702	-0.42669	0.065226	0.085677	-0.21849	1.3357	0.038206	-0.95266	-0.011198	-0.38392	0.1619	0.25506	0.0026357	-0.9157	-0.26023	0.15681	0.98701	0.012405	-0.43474	-0.098418	-0.0095426	-0.0023553	0.0051997	-0.041702	-0.014916	0.35496	0.010424	-0.007472	-0.30545	-0.56018	
Deletion Peak 16 - CN values	6q14.2  	chr6:64422985-119138282(probes 605210:635795)      	chr6:83898170-83908506(probes 616031:616033)        	chr6:82526039-84078563(probes 615315:616114)        	0.13082	    0.13656		Actual Copy Change Given	-0.31377	-0.46334	0.051221	-0.0016629	-0.070866	0	0.0050867	0.35055	0.0013868	0.042678	-0.0040033	0.01433	0.021864	-0.18174	0.15823	-0.03245	0	-0.0019989	-0.47723	0.097202	0	0.052099	-0.43322	-0.023264	0.061079	-0.016166	-0.012024	-0.011749	-0.011198	0.011539	-0.93119	-0.05442	-0.026946	0.016884	-0.044009	0.056798	0.085677	-0.59312	0.51542	0.06836	0.0051711	0.097252	-0.0011087	-0.45896	-0.09912	0.030591	-0.046091	0.033549	-0.1143	0.027029	-0.2649	-0.413	-0.098418	-0.0095426	-0.30805	0.0051997	0.0037465	-0.72234	-0.27117	-0.3289	0.59908	0.81474	-0.53451	
Deletion Peak 17 - CN values	7q31.1  	chr7:109599468-111366370(probes 722526:723227)    	chr7:110236682-111354928(probes 722942:723221)    	chr7:110437436-111426681(probes 723032:723270)    	1.9847e-07	 0.00018871		Actual Copy Change Given	0.053521	1.2825	-0.14839	-0.005814	-1.2929	-0.18865	0.042166	-1.1194	0.001803	0.31348	-0.34122	-0.1985	0.23867	-0.18043	-0.034495	0.28248	-1.0103	0.85691	0.058224	0.65026	-0.21354	0.3395	0.9744	-0.0057626	0.049966	-0.66652	-0.03681	0.13495	0.0030522	0.052241	-0.4108	-0.07881	1.342	-0.65134	0.028903	0.047978	0.18298	0.27726	0.9302	0.04259	-0.45037	1.2045	0.56205	-0.43398	0.62855	0.78074	0.35865	-0.2192	-0.12421	-0.94391	1.1495	0.44636	-0.64678	-0.012024	0.0075	-0.32458	0.71979	0.62861	0.077286	-0.33479	0.0066653	0.23318	-0.54523	
Deletion Peak 18 - CN values	7q36.2  	chr7:151566143-159138663(probes 744726:748180)    	chr7:154715153-154739216(probes 746082:746099)    	chr7:120002433-159138663(probes 727703:748180)    	5.6787e-06	  0.0043913		Actual Copy Change Given	0.053521	1.2445	-0.26288	-0.005814	0.020278	-0.18257	-0.15356	0.091155	0.001803	-0.019504	-0.34122	-0.23814	0.23867	-0.18043	0.40361	0.28248	-0.88023	0.40353	0.074265	0.67734	-0.21701	0.010424	0.91403	-0.0057626	0.049966	-0.69528	-0.77122	0.13273	-0.71256	-0.012851	-0.42101	-0.10368	0.049256	-0.59524	0.19542	0.047978	0.18495	0.27726	-0.6509	0.034693	0.015343	-0.43691	0.56205	-0.43398	-0.4315	0.72888	0.90022	-0.10723	-0.15413	-0.96049	-0.42623	0.37232	-0.35412	-0.012024	0.0075	-0.41833	0.71979	0.62861	-0.56654	-0.97132	0.69746	0.51682	-0.54523	
Deletion Peak 19 - CN values	8p23.2  	chr8:2079140-6262191(probes 748920:750770)            	chr8:2784419-4854274(probes 748968:750391)            	chr8:3519695-3520870(probes 749680:749681)            	0.013777	   0.013521		Actual Copy Change Given	0.361	0.99343	-0.40541	0.20748	-0.41074	0.18374	-0.51177	-0.51681	0.0012481	-0.10715	-0.32179	-0.082269	-0.18534	0.20733	1.4155	0.21637	-0.2396	-0.53281	0.082765	-0.51712	-0.20535	0	-0.52292	0.8193	3.6569	0.26042	1.6225	-0.34021	-0.0067813	-0.028491	0.33865	0.013213	-0.28715	-0.0010693	0.42715	-0.45394	-0.53571	-0.0013858	-0.13251	-0.74412	-0.45701	-0.031496	-0.040752	-0.0696	-0.40399	0.68477	0.39662	-0.21958	0.51821	-0.94054	-0.41386	-0.45704	-0.31961	-0.023429	-0.30803	-0.032054	-0.026167	-0.017941	-0.85575	-0.35556	-0.040209	-0.94846	0.017107	
Deletion Peak 20 - CN values	9p21.3  	chr9:21865498-21997722(probes 843188:843251)        	chr9:21959052-21997722(probes 843239:843251)        	chr9:20471313-28359876(probes 842205:847172)        	4.2952e-62	 4.2952e-62		Actual Copy Change Given	-0.68524	0.016705	-0.67584	-0.635	-1.0085	-0.1827	-0.3933	-0.47818	-0.0030014	-0.30268	-0.69216	-0.92025	-0.29331	-0.18433	-0.011473	-0.87767	-0.47067	-1.2929	-0.47427	0.072109	-0.26384	0.015028	-0.95377	-0.015616	0.037641	-1.2929	-0.73047	-0.32913	-0.69866	0.00069327	0.10614	-0.14091	-0.59663	-0.29942	-0.11691	-0.065325	-1.2929	-1.2132	-0.62998	-1.2929	-0.90713	-1.1814	-0.74011	-0.49642	-1.053	-1.2929	2.1261	-0.87377	-0.29319	-1.2929	-1.1688	-1.2595	-0.95384	-1.1841	-0.61095	-1.0525	-1.2929	-1.274	-0.52297	-0.93556	-1.2642	-1.2929	-0.55187	
Deletion Peak 21 - CN values	10p11.21	chr10:34059131-35328087(probes 921138:921877)      	chr10:34597962-35128523(probes 921548:921858)      	chr10:34865759-34867204(probes 921704:921705)      	0.0010606	 0.00098626		Actual Copy Change Given	-0.32774	0.029747	-0.188	-0.005261	0.040544	0.001803	-0.12148	0.045991	-0.0024938	-0.36254	-0.010203	-0.25062	-0.43201	0.58256	-0.01037	-0.14005	0.38296	-0.47928	0.097688	-0.19475	0.49165	-0.31786	0.25137	0	-0.0027707	-0.023577	0.0076301	-0.043737	0.019643	-0.03643	3.4487	0.054091	-0.20871	-0.0016234	-0.030131	0	-0.13484	0.024127	1.8456	-0.00097017	-0.0053642	-0.41344	3.6569	1.0884	-0.11669	0.70232	-0.41304	0.30889	-0.0042451	0.022444	-0.40791	-0.020687	0.06537	0.58435	0.023706	0.65835	-0.044551	-0.70091	-0.0085766	-0.34712	-0.70962	0.24934	0.00082348	
Deletion Peak 22 - CN values	10q23.31	chr10:89617158-90533234(probes 949996:950672)      	chr10:89617402-89735596(probes 949997:950185)      	chr10:86498332-92132870(probes 948212:951790)      	0.00026125	 0.00026125		Actual Copy Change Given	-0.32774	-0.09721	-0.188	-0.005261	-0.39679	0.001803	0.33788	0.048972	-0.0024938	-0.35492	-0.010203	0.16775	-0.32042	-0.19174	0.0038854	-0.11822	-0.022195	-0.31359	-0.14129	-0.1911	0.46843	-0.31786	-0.46462	0.0044927	-0.80335	-0.0083121	0.024969	-0.51805	0.019643	0.0029133	-0.82423	-0.33871	-0.1995	-0.0016234	-0.23753	-0.037898	-0.116	0.024127	-0.64311	-0.71399	-0.0053642	-0.016567	-0.0029091	-0.52194	0.22602	-0.022058	0.35116	-0.06048	-0.0026322	-0.86916	-0.38926	-0.43702	0.12756	-0.0029091	-0.32437	-0.37209	0.56561	-0.01037	-0.35281	-0.34572	-0.012713	-0.30698	0.0006761	
Deletion Peak 23 - CN values	11p15.4 	chr11:3861173-4115961(probes 979860:980008)          	chr11:3872464-4115961(probes 979870:980008)          	chr11:3999073-4001007(probes 979940:979941)          	0.0095616	  0.0099856		Actual Copy Change Given	0.048262	0.019643	-0.14222	0	-0.39758	0.040044	0.026373	0.089416	-0.0051227	-0.37824	-0.00038689	-0.035312	0.26467	-0.19812	-0.020687	-0.22133	-0.048748	-0.031008	-0.22108	0.11884	0.042166	-0.33225	-0.50079	-0.013689	0.0062012	0.25729	-0.020961	-0.34033	-0.68606	-0.051586	-0.12147	-0.014609	-0.017529	0.28759	0.023005	-0.048954	-0.5164	-0.22932	-0.064911	-0.72623	-0.44736	-0.40926	-0.38055	-0.218	-0.078188	-0.12082	0.64444	0.034818	-0.14926	-0.099876	-0.32806	-0.43973	-0.23472	-0.035585	-0.011198	-0.44801	0.018663	0.0033299	-0.45319	-0.38078	-0.75582	-0.29863	-0.030039	
Deletion Peak 24 - CN values	11q24.3 	chr11:111284647-135006516(probes 1040178:1055983)	chr11:130090905-130190620(probes 1053486:1053528)	chr11:130134442-130192973(probes 1053504:1053532)	0.076564	   0.074113		Actual Copy Change Given	0.03214	0.019643	0.010818	-0.0042929	0.04295	-0.18798	-0.48739	-0.40639	-0.0051227	-0.024336	-0.33639	-0.035312	-0.32205	-0.18584	-0.020687	-0.18295	-0.88264	-0.055422	0.27609	0.099724	-0.19675	0.32295	0.6703	-0.011973	0.016845	-0.62466	-0.0094288	-0.33818	-0.69269	0.54896	-0.12525	-0.0038779	-0.028355	-0.28021	0.090535	0.085365	-0.53195	-0.51414	-0.064911	-1.2929	-0.43537	-0.0012473	-0.054041	-0.5096	-0.062673	0.0096848	-0.57129	-0.25043	-0.0081624	3.6569	-0.42863	-0.42855	-0.48239	-0.040888	-0.3341	-0.37898	-0.72296	-0.016292	-0.54108	-0.33906	-0.052763	-0.87096	0.0080395	
Deletion Peak 25 - CN values	12q12   	chr12:1-133851895(probes 1055984:1129960)           	chr12:46309839-46387100(probes 1079441:1079476)    	chr12:46145501-46381205(probes 1079374:1079473)    	0.23041	    0.21926		Actual Copy Change Given	-0.30512	-0.43321	0.044266	0.046905	-1.2472	0.062346	0.034113	-0.47279	-0.00027724	0.10419	0.014359	-0.23031	-0.14888	0.066658	-0.13669	0	0.019363	0.019163	-0.48395	0.10162	0.071966	0.0046276	-0.39608	-0.0034113	0.019363	0.28531	-0.024251	-0.32728	-0.67729	-0.0091286	0.097833	-0.31389	0.11858	0.012416	-0.10487	0.0416	-0.13109	-0.026344	0.55407	0.036653	0.0044763	-0.38638	0.0075	0.033408	1.4209	-0.0528	-0.057604	0.11624	0.01433	0.022444	0.24423	0.021884	-0.087579	2.3515	-0.097363	0.36956	0.65516	0.001803	0.13125	-0.32065	0.57916	-0.27726	0.0092925	
Deletion Peak 26 - CN values	13q12.11	chr13:1-20527410(probes 1129961:1130328)           	chr13:19618141-19699289(probes 1130072:1130130)    	chr13:1-20535070(probes 1129961:1130330)           	0.013748	   0.013521		Actual Copy Change Given	0.050819	-0.42598	-0.148	-0.40473	-0.82923	-0.014366	0.032281	-0.20099	-0.0023553	-0.033048	-0.32342	-0.52532	-0.2856	0.21637	0.81454	0.047836	0.84002	-0.053669	-0.21293	0.069239	-0.22264	0.61269	-0.0066432	0.73007	0.35137	-0.14748	-0.055769	0.011679	0.010703	0.54365	-0.31381	0.020763	-0.30534	-0.16875	0.36199	-0.028491	-0.53885	-0.43084	-0.074544	-0.73362	-0.40372	-0.41121	-0.0083005	-0.52721	-0.23597	-0.34102	0.019031	-0.25041	-0.0099565	0.016845	-0.020796	-0.41586	-0.12758	-0.12317	-0.32449	-0.38801	0.001803	-0.65547	-0.017627	0.34892	0.015866	-0.8313	-0.0048633	
Deletion Peak 27 - CN values	15q13.1 	chr15:1-45658981(probes 1236097:1246716)           	chr15:28097279-31135788(probes 1238769:1238783)    	chr15:28482239-28488887(probes 1238777:1238778)    	0.17199	    0.17199		Actual Copy Change Given	0.018108	-0.32751	-0.014802	0.0036076	0.024904	-0.17992	-0.022744	-1.062	-0.0008316	0.24134	-0.032286	0.012237	0	0.2058	-0.052396	-0.065447	-0.44997	-0.023076	-0.1866	-0.1803	-0.055774	-0.31657	-0.47575	0.023618	-0.0088357	-0.3809	-0.017529	-0.03395	-0.047936	-0.014641	0.35839	0.061937	-0.21787	-0.18077	0.1437	0.056726	0.31643	0.42464	-0.60458	-0.0045695	0.010181	0.0030522	0.097397	-0.14129	-0.075255	-0.023977	-0.066435	0.73929	-0.0031859	0.012795	-0.37795	0.041498	-0.097232	-0.0084385	-0.31646	0.32583	-0.73784	-0.00097017	-0.23447	0.32557	-0.016017	-0.31377	0.53483	
Deletion Peak 28 - CN values	16q23.1 	chr16:78129058-79627770(probes 1313869:1315233)    	chr16:78129058-79247026(probes 1313869:1314881)    	chr16:78531308-79113268(probes 1314282:1314708)    	4.5581e-16	 4.5581e-16		Actual Copy Change Given	0.0065262	-0.5038	0.36327	-0.0013858	0.024202	-0.19737	0.094491	-1.2929	-0.0070576	-0.10225	0.04744	0.52361	-0.060211	-0.63699	-0.012523	0.19178	-0.21268	0.42059	-0.48628	-0.50409	-1.1674	0.29835	0.11991	-0.036487	-1.2929	-0.0038895	-0.17158	0.12697	-0.035721	-0.02384	-1.2929	-0.3217	-0.57467	-0.3767	-1.0953	-0.83454	-0.49246	0.0026605	-0.087579	-0.0085766	0.0010058	-0.34698	-0.014778	0.26828	0.58254	-0.072274	-0.85752	-0.33422	-0.01409	-0.0039892	-0.36904	-0.044009	0.19801	-0.06142	-0.0024938	0.28793	-0.039937	0.43194	-0.26697	-0.38448	-0.043602	0.3153	-0.078694	
Deletion Peak 29 - CN values	17q25.3 	chr17:80404327-81195210(probes 1358157:1358453)    	chr17:80786416-80801903(probes 1358373:1358380)    	chr17:80423187-81195210(probes 1358166:1358453)    	0.026702	   0.025793		Actual Copy Change Given	0.017824	0.45275	0.043982	-0.058596	-0.0049344	0.02806	-0.50134	-0.016292	-0.0027707	0.25157	0.10851	-1.1207	-0.196	0	0.46622	0.30473	0.63408	-0.037746	0.00013863	0.10351	0.060936	-0.31634	-0.52634	0.046611	-0.88403	-0.018639	0.56187	0.12602	0.067518	1.0555	-0.23506	-0.093574	0.089996	-0.30612	-0.038306	-0.05948	0.30011	-0.017529	0.061508	-0.17677	-0.0052259	-0.020999	-0.0018014	0.25843	-0.12867	-0.074277	0.29734	-0.036129	0.065083	-0.99004	0.13749	0.33221	0.11908	0.52818	-0.046854	-0.4587	-0.087722	0.8705	-0.61422	0.036794	-0.051586	-0.32693	-0.010939	
Deletion Peak 30 - CN values	18q12.2 	chr18:35235531-39060470(probes 1376706:1378984)    	chr18:36783539-37333360(probes 1377716:1377952)    	chr18:37108839-37114064(probes 1377835:1377836)    	0.026213	   0.043103		Actual Copy Change Given	0.61426	0.041175	-0.22554	0.0087528	-0.40126	-0.089552	0.09856	-0.46727	-0.0023553	-0.36083	-0.0070288	-0.24204	-0.52102	-0.18597	0.39761	-0.16879	-1.2929	-0.050969	-0.47934	-0.50525	-0.42309	-0.66309	-0.19762	-0.014865	-0.061017	0.024536	0.61952	-0.32421	-0.7019	-0.0022168	-0.6783	0.017264	-0.56077	-0.55073	0.075415	-0.49801	-0.53276	-0.091287	0.013213	-0.70064	-0.44563	-0.41124	-0.37121	-0.48407	-0.046762	-0.8222	-0.031902	-0.26396	0.1673	0.075271	-0.40059	-0.033787	0.30425	-0.0080244	-0.31709	-0.35265	0.0091705	-0.024798	-0.53541	-0.36703	-0.69685	1.0477	-0.53329	
Deletion Peak 31 - CN values	18q21.2 	chr18:47918640-48705371(probes 1384615:1385252)    	chr18:48491525-48516520(probes 1385045:1385058)    	chr18:48111942-48658257(probes 1384779:1385214)    	0.0084404	   0.017175		Actual Copy Change Given	0.61426	0.041175	-0.22554	0.0087528	-0.40126	-0.089552	-0.51177	-0.46727	-0.0023553	-0.36083	-0.0070288	-0.24204	-0.52102	-0.19544	0.39761	-0.16879	-0.43333	-0.050969	-0.47934	-0.50525	-0.42309	-0.66309	-0.19762	-0.014865	-0.38179	0.011528	-0.011749	-0.28406	-0.7019	0.57344	-0.72261	0.017264	-1.1125	-0.55073	0.075415	-0.49801	-0.53276	-0.091287	-0.037898	-0.71404	-0.44563	-0.41124	-0.37121	-0.48407	-0.057698	-0.0098185	-0.049452	-0.18923	0.1673	-0.85876	-0.40059	-0.033787	0.30425	-0.011335	-0.31709	-0.35265	0.0091705	0.024038	-0.53541	-0.36703	-0.69685	-0.8744	-0.98928	
Deletion Peak 32 - CN values	19p13.3 	chr19:1-3363200(probes 1401140:1401863)               	chr19:1280660-1338236(probes 1401318:1401319)        	chr19:1-3329808(probes 1401140:1401851)               	0.0053004	  0.0055103		Actual Copy Change Given	-0.021362	0.32495	0.073233	-0.016979	-0.36753	0.062794	-0.49078	-0.49809	-0.0081949	-0.1336	-0.37074	-0.48229	-0.74647	0.13613	-0.2491	0.074984	-0.079077	0.43574	-0.53997	-0.22256	-0.22773	-0.0094046	-0.45854	0.082652	-0.093535	-0.1494	-0.060345	-0.344	-0.62312	-0.66836	0.15188	-0.3828	0.057226	-0.01694	-0.0067813	-0.159	-0.47194	0.24653	-0.19662	-0.16026	-0.094294	-0.065179	-0.048207	-0.12875	-0.13152	-0.16307	0.71653	-0.28013	-0.018078	-0.1092	0.042053	-0.15656	-0.13225	-0.029857	-0.066654	-0.14098	-0.097363	0.031577	-0.15046	0.13184	-0.83358	-0.89534	-0.093323	
Deletion Peak 33 - CN values	19q13.31	chr19:42754638-46149617(probes 1418563:1419898)    	chr19:45009978-45042764(probes 1419454:1419466)    	chr19:44066370-46154731(probes 1418824:1419900)    	0.027591	   0.025793		Actual Copy Change Given	0	0.37907	-0.065007	-0.023732	-0.16783	-0.020865	0.024408	0.30937	-0.0026322	-0.11631	-0.040452	0.0012481	0.28226	0.13613	-0.28396	0.074984	0.029888	-1.2929	0.034818	0.39546	0.58614	-0.0094046	0.39944	0.048314	-0.091972	-0.13896	0.55673	0.25746	-0.62312	0.51769	0.15188	-0.25213	0.068378	0.018958	-0.0067813	-0.080674	0.26812	0.24653	-0.15822	-0.16345	-0.094294	-0.049965	-0.33491	-0.12875	-0.11748	0.50776	-0.19642	-0.27488	-0.018078	-0.99367	-0.37445	-0.15656	-0.0081624	-0.018078	-0.05496	-0.46414	-0.097363	0.031577	-0.030131	0.023386	-0.11913	-0.27547	-0.07896	
Deletion Peak 34 - CN values	20p12.1 	chr20:14302876-16252980(probes 1433897:1435086)    	chr20:13965126-16036135(probes 1433731:1434867)    	chr20:15466331-15467187(probes 1434300:1434301)    	0.00791	  0.0079369		Actual Copy Change Given	1.1762	0.47787	0.30279	0.003191	0.3734	0.34909	-0.014576	-1.2929	-0.0092666	0.29415	0.78026	0.0068044	0.61407	0.19269	0.40944	0.2958	0.099483	0.81875	-0.48102	0.13288	-0.23276	0.65811	-0.48229	0.015639	0.0043021	0.10773	1.1793	-0.3371	0.68701	1.1277	-0.026851	0.39011	0.72357	0.26393	-0.0092666	0.22068	0.13969	0.015866	-0.029857	-0.72729	0.0032262	-0.40528	0.28074	0.17664	0.41692	-0.040752	-0.0080751	-0.01409	0.55478	-0.93651	0.37598	-0.018325	0.79878	-0.026851	0.060651	0.30711	-0.0023963	0.5713	0.015727	-0.0034627	-0.042381	1.2452	-0.022349	
Deletion Peak 35 - CN values	21q22.12	chr21:36154821-37095653(probes 1475579:1476343)    	chr21:36190601-36267417(probes 1475599:1475643)    	chr21:36215172-36256307(probes 1475617:1475641)    	0.077405	   0.074113		Actual Copy Change Given	-0.72694	0.032281	-0.10371	-0.2005	0.77647	-0.17689	-0.4787	-1.0374	-0.0073943	-0.36345	-0.0032382	-0.49778	0.23024	-0.19575	-0.47046	-0.28928	-0.029994	-0.48044	-0.48355	-0.50194	0.10176	-0.31809	-0.47067	-0.020638	-0.20466	-0.68147	-0.015329	0.020343	-0.68979	-0.05878	-0.6867	-0.42506	-0.56475	-0.19321	-0.26781	-0.90563	-0.5118	-0.43192	0.41379	0.035383	-0.44919	-0.40329	0.0023581	0.35414	-0.11878	0.1664	0.77316	0.083776	-0.29201	0.016022	0.24803	0	-0.1779	-0.013402	-0.0029091	-0.36788	-0.0026322	0.019503	-0.22158	-0.33894	-0.032878	-0.29686	-1.2213	
Deletion Peak 36 - CN values	22q11.1 	chr22:1-22114035(probes 1482986:1483758)           	chr22:1-17752793(probes 1482986:1483168)           	chr22:1-17990605(probes 1482986:1483315)           	0.17292	    0.17292		Actual Copy Change Given	-0.013264	0.44833	0.55103	0.21499	-0.40046	0.027216	-0.19475	-0.17335	-0.0047079	-0.10229	-0.038821	-0.5129	-0.51249	-0.23214	0.43344	0.1283	-0.37741	0.44233	0.063509	-0.13807	-0.050776	-0.32797	-0.50463	-0.065263	-0.067327	0.35086	-0.76141	-0.078144	-0.67912	-0.078677	-1.0464	-0.17006	-0.54643	-0.32155	-0.1508	-0.036674	-0.051181	-0.25067	-0.13018	-0.085457	-0.0060553	-1.2929	0.34242	-0.19687	-0.096879	-0.10762	-0.066971	-0.53835	-0.15093	-0.064106	0.25827	0.68217	-0.2281	0.57219	0.028903	0.28445	-0.043195	0.54347	0.22283	0.22391	-0.082004	-0.070402	-0.066	
Deletion Peak 37 - CN values	Xp22.2  	chrX:13790334-14026603(probes 1503864:1504028)      	chrX:13790530-13966644(probes 1503865:1503981)      	chrX:13880100-13881471(probes 1503924:1503925)      	0.053869	    0.10594		Actual Copy Change Given	-0.14451	-0.55547	0.54256	-0.39004	-0.033059	0.022304	0.031577	-0.26877	0.00597	-0.47082	-0.36031	-0.040616	-0.29142	0.013401	0.11125	0.058031	-0.27762	-0.42325	0.095072	-0.32635	-0.10276	-0.055903	0.013772	0.16316	-0.16739	0.078282	-0.47363	-0.036538	-0.16637	0.12859	0.2456	0.017404	-0.015054	0.030069	0.006109	0.046417	-0.0083005	-0.64684	-0.67802	-0.59614	-0.082767	0.028341	-0.48008	-0.52634	0.30724	-0.010922	0.31878	-0.014564	-0.34779	-0.23618	-0.49629	-0.40218	0.089416	0.25636	-0.1093	0.015372	-0.059269	1.0038	-0.058196	-0.40849	-0.022058	-0.14438	-0.13705	
Deletion Peak 38 - CN values	Xp21.1  	chrX:30870233-32665140(probes 1512482:1513515)      	chrX:30870233-34033668(probes 1512482:1513738)      	chrX:32077135-32079659(probes 1513111:1513112)      	3.5786e-07	 6.8759e-07		Actual Copy Change Given	-0.14451	-0.55547	-0.40608	-0.39004	-0.0639	0.022304	0.031577	-0.2589	0.00597	-0.47082	-0.36031	-0.040616	-0.29142	0.013401	0.10205	0.058031	-0.29296	-0.4637	0.09101	-0.32158	-0.10276	-0.055903	0.0044411	0.15404	-0.18081	-0.33988	-0.43734	-0.036538	-0.19425	-0.82684	0.2456	0.017404	-0.015054	0.010486	-0.013402	0.046417	-0.0083005	-0.64684	0.073115	-0.59614	-0.082767	0.028341	-0.48008	-0.48617	0.30724	-0.010922	0.15237	-0.014564	0.3348	-0.23618	-0.48542	-0.24326	0.089416	0.25636	-0.1093	0.015372	-0.059269	0.96206	-0.058196	-0.36646	-0.022058	-0.20928	-0.13705	
Deletion Peak 39 - CN values	Xp11.3  	chrX:44702452-45008304(probes 1518596:1518718)      	chrX:44729401-44977416(probes 1518606:1518705)      	chrX:44773273-44872951(probes 1518619:1518664)      	0.00098531	  0.0043913		Actual Copy Change Given	-0.060883	-0.55547	-0.40608	-0.39004	-0.0639	-0.39608	0.016919	-0.2589	0.00597	-0.47082	-0.36031	-1.1615	-0.29142	0.013401	0.11404	0.050108	-0.29296	-0.23526	1.4075	-0.32158	-0.10276	-0.055903	0.046559	0.15404	-0.18081	-0.33988	-0.43734	-0.036538	-0.16547	0.083198	0.2456	0.017404	-0.029293	0.010486	-0.060935	-0.016774	-0.0045695	-0.64684	3.6569	-0.59614	-0.082767	0.028341	-0.48008	-0.52444	0.30724	-0.010922	0.15237	-1.0758	-0.32469	-0.22418	-0.48542	-0.24326	0.089416	0.25636	-0.14379	0.0096523	-0.059269	-1.2929	-0.058196	-0.36646	-0.022058	-0.13626	-0.13705	
Deletion Peak 40 - CN values	Xq21.33 	chrX:96134519-98718611(probes 1536600:1538025)      	chrX:95939207-96856298(probes 1536496:1536963)      	chrX:96327240-96328681(probes 1536730:1536731)      	0.034339	   0.034339		Actual Copy Change Given	-0.060883	0.40844	0.055063	-0.0071032	-0.0639	0.3653	0.00626	0.33561	0.0032958	0.26398	0.27435	-0.057993	0.11741	0.0076392	0.11404	0.050108	-0.31003	0.36875	-0.48596	0.17845	0.87508	-0.055903	-0.018129	0.15404	-0.18299	-0.35123	0.69821	-0.036538	-0.16547	0.083198	-0.20274	0.017404	-0.029293	0.010486	-0.060935	-0.0832	-0.033488	0.54308	0.44003	-0.59614	-0.082767	0.018523	0.47718	0.35545	-0.079218	-0.010922	0.15679	-1.2026	0.30697	-0.22418	0.37977	-0.24326	0.089416	0.25324	-0.13248	-0.86118	-0.061727	-0.16955	-0.058196	0.28328	-0.022058	0.96452	-0.13705	
