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ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_mirnaTopgenesforCluster.3.1368/mirnaTopgenes_v1.R")
> result <- main("-s/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_mirnaTopgenesforCluster.3.1368/", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/GBM-TP/4392496/GDAC_MergeDataFiles_4396186/GBM-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt", "-u150", "-ooutputprefix")
> q(save="no")
lsf stdout
Sender: LSF System <lsf@node1534>
Subject: Job 1619225: </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -DR_HOME=/broad/software/free/Linux/redhat_5_x86_64/pkgs/r_2.10.1 -Dr_flags=--vanilla -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/RunR/ RunR /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_mirnaTopgenesforCluster.3.1368/mirnaTopgenes_v1.R main -s/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_mirnaTopgenesforCluster.3.1368/ -m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/GBM-TP/4392496/GDAC_MergeDataFiles_4396186/GBM-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt -u150 -ooutputprefix >> cmd.out> in cluster cgalsf Done

Job </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -DR_HOME=/broad/software/free/Linux/redhat_5_x86_64/pkgs/r_2.10.1 -Dr_flags=--vanilla -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/RunR/ RunR /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_mirnaTopgenesforCluster.3.1368/mirnaTopgenes_v1.R main -s/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_mirnaTopgenesforCluster.3.1368/ -m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/GBM-TP/4392496/GDAC_MergeDataFiles_4396186/GBM-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt -u150 -ooutputprefix >> cmd.out> was submitted from host <node1556> by user <cgaadm> in cluster <cgalsf>.
Job was executed on host(s) <node1534>, in queue <cga>, as user <cgaadm> in cluster <cgalsf>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/473300> was used as the working directory.
Started at Wed Oct  2 10:41:15 2013
Results reported at Wed Oct  2 10:41:32 2013

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -DR_HOME=/broad/software/free/Linux/redhat_5_x86_64/pkgs/r_2.10.1 -Dr_flags=--vanilla -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/RunR/ RunR /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_mirnaTopgenesforCluster.3.1368/mirnaTopgenes_v1.R main -s/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_mirnaTopgenesforCluster.3.1368/ -m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/GBM-TP/4392496/GDAC_MergeDataFiles_4396186/GBM-TP.mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt -u150 -ooutputprefix >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :     15.52 sec.
    Max Memory :         4 MB
    Max Swap   :        36 MB

    Max Processes  :         1
    Max Threads    :         1

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
