Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-BA-4074-01A-01D-1431-02	TCGA-BA-4075-01A-01D-1431-02	TCGA-BA-4076-01A-01D-1431-02	TCGA-BA-4077-01B-01D-1431-02	TCGA-BA-4078-01A-01D-1431-02	TCGA-BA-5149-01A-01D-1509-02	TCGA-BA-5151-01A-01D-1431-02	TCGA-BA-5153-01A-01D-1431-02	TCGA-BA-5555-01A-01D-1509-02	TCGA-BA-5557-01A-01D-1509-02	TCGA-BA-5558-01A-01D-1509-02	TCGA-BA-5559-01A-01D-1509-02	TCGA-BB-4223-01A-01D-1431-02	TCGA-BB-4224-01A-01D-1431-02	TCGA-BB-4225-01A-01D-1431-02	TCGA-CN-4722-01A-01D-1431-02	TCGA-CN-4725-01A-01D-1431-02	TCGA-CN-4727-01A-01D-1431-02	TCGA-CN-4729-01A-01D-1431-02	TCGA-CN-4730-01A-01D-1431-02	TCGA-CN-4731-01A-01D-1431-02	TCGA-CN-4733-01A-02D-1868-02	TCGA-CN-4734-01A-01D-1431-02	TCGA-CN-4735-01A-01D-1431-02	TCGA-CN-4736-01A-01D-1431-02	TCGA-CN-4737-01A-01D-1431-02	TCGA-CN-4738-01A-02D-1509-02	TCGA-CN-4739-01A-02D-1509-02	TCGA-CN-4740-01A-01D-1431-02	TCGA-CN-4741-01A-01D-1431-02	TCGA-CN-4742-01A-02D-1509-02	TCGA-CN-5355-01A-01D-1431-02	TCGA-CN-5356-01A-01D-1431-02	TCGA-CN-5360-01A-01D-1431-02	TCGA-CN-5361-01A-01D-1431-02	TCGA-CN-5363-01A-01D-1431-02	TCGA-CN-5364-01A-01D-1431-02	TCGA-CN-5366-01A-01D-1431-02	TCGA-CN-5367-01A-01D-1431-02	TCGA-CN-5369-01A-01D-1431-02	TCGA-CN-5373-01A-01D-1431-02	TCGA-CN-6013-01A-11D-1681-02	TCGA-CN-6017-01A-11D-1681-02	TCGA-CN-6018-01A-11D-1681-02	TCGA-CN-6019-01A-11D-1681-02	TCGA-CN-6996-01A-11D-1911-02	TCGA-CN-6998-01A-23D-2317-26	TCGA-CQ-5325-01A-01D-1681-02	TCGA-CQ-5327-01A-01D-1681-02	TCGA-CQ-5329-01A-01D-1681-02	TCGA-CQ-5330-01A-01D-1681-02	TCGA-CQ-6219-01A-11D-1911-02	TCGA-CQ-6220-01A-11D-1911-02	TCGA-CQ-6221-01A-11D-2317-26	TCGA-CQ-6223-01A-11D-1911-02	TCGA-CQ-6224-01A-11D-1911-02	TCGA-CQ-6225-01A-11D-1911-02	TCGA-CQ-6229-01A-11D-1911-02	TCGA-CQ-7065-01A-11D-2317-26	TCGA-CQ-7068-01A-11D-2317-26	TCGA-CV-5431-01A-01D-1509-02	TCGA-CV-5439-01A-01D-1681-02	TCGA-CV-5966-01A-11D-1681-02	TCGA-CV-5970-01A-11D-1681-02	TCGA-CV-5971-01A-11D-1681-02	TCGA-CV-5973-01A-11D-1681-02	TCGA-CV-5976-01A-11D-1681-02	TCGA-CV-5977-01A-11D-1681-02	TCGA-CV-6003-01A-11D-1681-02	TCGA-CV-6436-01A-11D-1681-02	TCGA-CV-6441-01A-11D-1681-02	TCGA-CV-6933-01A-11D-1911-02	TCGA-CV-6938-01A-11D-1911-02	TCGA-CV-6939-01A-11D-1911-02	TCGA-CV-6945-01A-11D-1911-02	TCGA-CV-6948-01A-11D-1911-02	TCGA-CV-6951-01A-11D-1911-02	TCGA-CV-6952-01A-11D-1911-02	TCGA-CV-6954-01A-11D-1911-02	TCGA-CV-6959-01A-11D-1911-02	TCGA-CV-6960-01A-41D-2317-26	TCGA-CV-7091-01A-11D-2317-26	TCGA-CV-7095-01A-21D-2317-26	TCGA-CV-7178-01A-21D-2317-26	TCGA-CV-7183-01A-11D-2317-26	TCGA-CV-7238-01A-11D-2317-26	TCGA-CV-7247-01A-11D-2317-26	TCGA-CV-7263-01A-11D-2317-26	TCGA-CV-7407-01A-11D-2317-26	TCGA-CV-7411-01A-11D-2317-26	TCGA-CV-7414-01A-11D-2317-26	TCGA-CV-7428-01A-11D-2317-26	TCGA-CV-7429-01A-11D-2317-26	TCGA-CV-7432-01A-11D-2317-26	TCGA-CV-7434-01A-11D-2317-26	TCGA-CX-7085-01A-21D-2317-26	TCGA-D6-6515-01A-21D-1868-02	TCGA-D6-6517-01A-11D-1868-02	TCGA-D6-6823-01A-11D-1911-02	TCGA-D6-6825-01A-21D-1911-02	TCGA-D6-6826-01A-11D-1911-02	TCGA-D6-6827-01A-11D-1911-02	TCGA-DQ-5624-01A-01D-1868-02	TCGA-DQ-5625-01A-01D-1868-02	TCGA-DQ-5630-01A-01D-1868-02	TCGA-DQ-5631-01A-01D-1868-02	TCGA-H7-7774-01A-21D-2317-26	TCGA-IQ-7632-01A-11D-2317-26	
Amplification Peak  1	2q11.2 	chr2:97149467-99094706(probes 1478:1499)    	chr2:97504221-98285966(probes 1481:1487)    	chr2:97504221-99114869(probes 1481:1501)    	0.1469	     0.1469		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	1	0	0	0	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  2	7p11.2 	chr7:54959582-55684153(probes 7072:7095)    	chr7:55066674-55271334(probes 7077:7084)    	chr7:52840694-63501388(probes 7037:7129)    	3.4839e-12	 3.4839e-12		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	1	2	2	0	0	1	0	0	1	0	0	0	0	2	0	1	0	0	0	1	0	0	0	0	0	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	2	0	0	0	0	0	1	2	0	2	2	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	1	2	2	1	2	0	0	0	1	0	0	0	0	0	2	0	0	0	0	2	0	0	1	1	2	1	0	0	0	2	
Amplification Peak  3	7q21.3 	chr7:87928365-104608925(probes 7282:7377)  	chr7:92958178-93204033(probes 7308:7309)    	chr7:87928366-104002274(probes 7283:7372)  	0.016199	   0.016199		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	1	0	0	0	2	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	
Amplification Peak  4	8p11.23	chr8:38021977-38562621(probes 7965:7978)    	chr8:38281648-38285105(probes 7972:7973)    	chr8:37185847-40526848(probes 7932:8026)    	4.5211e-06	 4.5211e-06		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	0	0	1	1	2	2	0	2	0	1	0	1	0	1	0	0	0	0	1	2	0	0	1	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	1	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  5	8q11.21	chr8:49126904-50064004(probes 8105:8120)    	chr8:49270422-49569938(probes 8106:8111)    	chr8:49270422-50087234(probes 8106:8122)    	0.070516	   0.070516		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	1	0	0	0	2	0	0	2	1	1	1	1	2	2	1	1	0	1	0	1	2	1	0	1	2	0	1	1	0	2	1	0	0	0	1	0	1	1	0	0	1	0	0	0	1	1	0	0	2	2	0	0	0	0	1	1	0	1	1	0	0	1	0	0	2	1	2	2	0	0	1	0	0	1	1	1	1	0	1	1	1	1	2	0	1	1	1	1	0	0	2	0	0	2	0	0	1	2	0	1	0	1	2	1	0	0	0	
Amplification Peak  6	9p22.3 	chr9:9870217-16803132(probes 8783:8865)      	chr9:14915898-15101941(probes 8831:8834)    	chr9:13397965-16803132(probes 8817:8865)    	0.040264	   0.040264		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	2	0	0	0	0	2	0	1	0	2	0	1	0	0	0	0	0	2	0	1	0	2	1	0	1	0	0	0	0	1	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	2	0	0	0	0	0	0	0	0	1	0	0	1	0	
Amplification Peak  7	11q13.3	chr11:69545150-70374929(probes 10912:10933)	chr11:69718775-70319230(probes 10929:10930)	chr11:68239923-72146168(probes 10801:11063)	2.3924e-31	 2.3924e-31		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	2	2	2	2	2	0	0	1	0	1	0	0	0	1	0	0	2	0	0	1	0	0	2	0	1	0	2	0	0	2	0	0	0	0	2	2	2	2	0	0	2	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	1	0	2	0	0	1	0	2	1	2	2	0	0	1	0	0	2	0	2	0	0	1	1	1	2	2	0	0	2	0	1	0	2	0	0	2	1	0	0	1	0	2	2	1	0	2	0	2	0	0	
Amplification Peak  8	12q15  	chr12:68600593-70739579(probes 11946:11981)	chr12:69703695-69802930(probes 11965:11968)	chr12:68674961-70781203(probes 11947:11983)	0.038854	   0.038854		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	2	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	
Amplification Peak  9	17q12  	chr17:37561554-38464082(probes 14613:14624)	chr17:37634630-38024271(probes 14614:14623)	chr17:37634630-38531363(probes 14614:14626)	0.15727	    0.15727		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 10	18q11.2	chr18:19750821-24904993(probes 15040:15157)	chr18:20662673-20702507(probes 15055:15056)	chr18:20662673-21268769(probes 15055:15059)	0.19828	    0.19828		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	2	0	2	0	0	0	0	0	1	0	2	1	2	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 1	8p23.2	chr8:3505239-3868542(probes 7732:7749)    	chr8:3695988-3738402(probes 7738:7743)    	chr8:3695988-3872542(probes 7738:7751)    	0.13564	    0.13564		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	0	1	0	1	1	0	0	0	1	0	0	1	0	0	1	1	1	0	1	1	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	2	1	1	0	1	0	0	1	1	0	0	0	0	1	0	0	0	1	0	1	1	1	1	0	1	1	0	0	1	0	1	0	1	1	0	0	1	0	0	1	1	1	1	0	1	1	1	1	0	0	
Deletion Peak 2	9p21.3	chr9:21969802-21994304(probes 8990:8999)	chr9:21973950-21979760(probes 8995:8996)	chr9:21448286-22608295(probes 8937:9060)	9.5854e-19	 9.5854e-19		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	2	0	1	1	0	0	1	0	0	0	0	1	0	0	1	1	1	1	1	0	1	2	0	1	0	1	1	0	1	1	0	1	1	1	1	0	1	1	1	0	0	1	1	0	1	0	1	0	0	0	0	2	1	0	1	0	1	1	1	1	1	1	0	1	1	0	0	1	2	1	0	0	1	2	0	1	0	0	1	0	0	0	0	0	1	1	1	1	0	1	1	1	2	1	0	2	1	0	0	0	1	1	0	1	1	1	
Amplification Peak  1 - CN values	2q11.2 	chr2:97149467-99094706(probes 1478:1499)    	chr2:97504221-98285966(probes 1481:1487)    	chr2:97504221-99114869(probes 1481:1501)    	0.1469	     0.1469		Actual Copy Change Given	0.06191	0.44315	0.81911	-0.001095	0.001949	-0.021247	0.00031617	0.055641	0.30087	-0.048044	-0.0044689	-0.14874	0.016401	0.015903	-0.084649	0.0074452	0.046422	0.39732	-0.014754	0.00995	-0.0094538	0.022221	-0.00028563	0.036529	-0.15905	6	0	-0.10047	0	-0.034927	0.24461	-0.039826	0.15633	0.14286	-0.010753	-0.021364	0.012038	0.19519	0	-0.0043136	0.012408	-0.031317	-0.15159	0.038869	0.048107	-0.030679	0.17396	0	0.046419	-0.00066886	0.0028298	-0.087043	0	0.010315	0	-0.010661	0.33339	-0.0072349	-0.024981	0.0018715	0.54977	-0.0047202	-0.014967	-0.0031523	0	6	0.0051251	-0.026354	-0.20229	0.013661	0.017636	0.43926	-0.0090019	-0.010311	-0.12705	0.01548	0.4721	0.010674	0.022258	-0.0068723	2.4458	-0.14947	0.025922	0.4358	0.0011408	-0.019479	0.068827	0.060661	0.12638	0.0033592	0.44454	-0.057375	0.024871	0.023823	0.040366	-0.00021696	-0.048993	-0.0008556	0.078704	0.0052859	-0.28049	0.017826	-0.0061112	-0.021378	0.063587	-0.0011141	-0.016916	-0.00041039	
Amplification Peak  2 - CN values	7p11.2 	chr7:54959582-55684153(probes 7072:7095)    	chr7:55066674-55271334(probes 7077:7084)    	chr7:52840694-63501388(probes 7037:7129)    	3.4839e-12	 3.4839e-12		Actual Copy Change Given	0.6191	2.3671	5.9778	0.009944	0.018351	0.82766	-0.0044463	-0.008531	0.37047	0.087132	-0.0028931	-0.21375	0	2.4492	-0.08692	0.32304	0.06909	-0.016426	0.13621	0.88389	0.2627	0.23099	-0.027378	0.024032	0.00081876	0.68869	3.6449	0.17948	-0.0037168	-0.0020722	-0.01074	0.026131	0.16247	-0.029667	0.77781	0.1681	0.0026716	0.16888	0.074645	2.6694e-05	0.015373	0.34773	-0.053422	0.039666	0.088957	0.21875	-0.26232	-0.0042431	-0.00018847	1.135	3.0291	0.21068	0.24517	-0.0045969	0.082737	0.14248	0.34643	2.6212	0.024779	1.2566	1.4264	0.2848	-0.0082786	0.0016513	0.081591	0.0017161	6	0	-0.16965	-0.00031666	0.010103	6	-0.012328	-0.0070985	0.18066	0.027854	0.95955	-0.0019473	0.43946	6	6	0.76026	3.5344	-0.010981	0.048669	0.045831	0.59712	0.043675	0.26209	-0.0030213	0.021053	0.035584	3.7173	0.025915	-0.010802	-0.011681	-0.02439	1.6878	0.066636	-0.0077784	0.33989	0.52712	3.713	0.40045	0.047758	0.25374	0.06432	6	
Amplification Peak  3 - CN values	7q21.3 	chr7:87928365-104608925(probes 7282:7377)  	chr7:92958178-93204033(probes 7308:7309)    	chr7:87928366-104002274(probes 7283:7372)  	0.016199	   0.016199		Actual Copy Change Given	-0.5281	0	0.2353	0.009944	0.018351	0.016983	-0.0044463	0.0074035	0	0.087132	-0.0028931	-0.20461	-0.01232	-0.53425	-0.08692	0.32304	0.06909	0.38999	0.13621	-0.34879	-0.61807	-0.035831	-0.015685	0.91538	0.00081876	-0.2737	0.16605	0.17948	3.8052	-0.0020722	-0.0089904	0.026131	0.16247	0.28367	-0.007658	0.51718	0.0026716	0.22906	0.09283	0.0024796	0.34188	1.5476	0.032057	-0.23235	0.016822	-0.1482	-0.26655	-0.0042431	-0.00018847	0	-0.0045053	-0.09277	-0.27243	-0.0045969	0.033968	-0.010604	0.38979	0.0020336	0.024779	-0.010055	1.7979	0.2848	-0.0082786	0.0016513	0.081591	0.0017161	0.0088169	0	-0.16965	-0.00031666	0.87115	2.9588	-0.012328	-0.0070985	0.16171	0.03775	0.50781	-0.0019473	-0.40741	-0.0065879	3.859	-0.094914	0.0055552	0.87729	0.048669	0.045831	6	0.043675	0.26209	-0.0030213	3.2581	0.035584	-0.18538	0.025915	-0.010802	0.0022424	-0.06954	-0.016985	-0.24299	-0.0077784	0.32974	0.52712	0.0070424	0.41404	-0.013043	0.25954	0.06432	-0.066632	
Amplification Peak  4 - CN values	8p11.23	chr8:38021977-38562621(probes 7965:7978)    	chr8:38281648-38285105(probes 7972:7973)    	chr8:37185847-40526848(probes 7932:8026)    	4.5211e-06	 4.5211e-06		Actual Copy Change Given	-0.53935	1.3593	-0.8328	0.0038258	0.01167	-0.39349	-0.25941	0.00099702	0.013193	-0.24918	-0.4529	0.73161	0.74618	6	1.1473	0.0065006	6	-0.44006	0.80489	-0.0030358	0.42743	-0.15607	0.46097	0.05302	-0.37291	-0.06947	-0.15573	0.56266	3.6677	0.03335	-0.26349	0.45021	0.19398	-0.17798	1.6181	-0.20138	0	-0.24823	-0.38015	-0.060191	-0.48211	-0.52801	0.023264	0.53161	0.019675	-0.37075	-0.013544	-0.20242	0	-0.093017	-0.27616	-0.25236	-0.0042685	0.014677	0.094834	0.20688	4.8677	0.66531	-0.75745	0.5894	0.10178	0.0057714	-0.43234	-0.10037	0.030605	-0.51328	-0.56193	-0.035021	0.55852	-0.21251	5.663	-0.43741	0.046433	-0.021086	0.16511	-0.80335	-0.050972	-0.5332	3.246	-0.36317	-0.62242	0.27256	1.9983	-0.005241	-0.0059372	-0.18856	-0.49805	0.32322	1.2864	0.0018598	3.2256	0.011949	-0.11222	-0.11755	-0.72709	0.01135	0.049727	-0.36259	0.052275	-0.42936	0.028015	-0.02528	0.087437	-0.49197	-0.1389	0.26467	0.016414	0.094331	
Amplification Peak  5 - CN values	8q11.21	chr8:49126904-50064004(probes 8105:8120)    	chr8:49270422-49569938(probes 8106:8111)    	chr8:49270422-50087234(probes 8106:8122)    	0.070516	   0.070516		Actual Copy Change Given	0.022914	0.73464	-0.82929	0.0038258	0.01167	1.2012	0.07564	0.00099702	1.8279	0.40088	0.43183	0.66328	0.74618	1.6669	1.1473	0.35848	0.47867	0.012975	0.80489	-0.0030358	0.42743	2.1957	0.5167	0.05302	0.50685	1.1092	0.23953	0.56266	0.66559	0.03335	6	0.45021	0.19398	-0.19744	-0.34345	0.47813	0	0.59266	0.31637	0.026927	0.14849	0.448	0.081397	0.083965	0.041876	0.54544	0.75775	0.24331	0	1.1348	1.5579	0.24074	-0.0042685	0.014677	0.073481	0.57237	0.42834	0.18345	0.74177	0.5894	-0.19233	0.0057714	0.38775	0.045746	0.030605	1.0417	0.55254	2.7891	0.93071	0.22145	0.0013946	0.3432	0.046433	-0.021086	0.7803	0.89748	0.50688	0.5208	0.097149	0.32442	0.61624	0.6019	0.59757	6	-0.0059372	0.45328	0.4331	0.33286	0.5959	0.0018598	0.0064389	0.98954	-0.11222	-0.11755	1.3728	0.01135	-0.024705	0.49913	1.0424	0.02343	0.32693	-0.02528	0.75435	1.3496	0.30476	-0.087642	0.016414	0.12581	
Amplification Peak  6 - CN values	9p22.3 	chr9:9870217-16803132(probes 8783:8865)      	chr9:14915898-15101941(probes 8831:8834)    	chr9:13397965-16803132(probes 8817:8865)    	0.040264	   0.040264		Actual Copy Change Given	-0.50757	-0.088268	-0.83068	0	-0.84433	-0.38495	0	-0.00030204	-0.3678	0.23819	-0.016578	0.59947	-0.0094587	-0.51788	-0.099358	-0.011187	0.47228	-0.40411	-0.30106	-0.42171	-0.643	-0.31365	1.0064	-0.65855	-0.01134	-0.34789	-0.151	0	-0.23173	0.0096012	-0.27004	0.32906	-0.12031	-1.1202	-0.32874	2.2975	-0.019515	0.0030635	6	0.0099099	-0.42941	-0.10022	0.080523	1.5088	-0.27227	0.3573	0.015211	1.2528	0.049873	0.53157	0.26403	0.14596	-0.005672	-0.68281	0.12413	1.7829	-0.5606	0.40368	-0.75637	1.8548	0.59224	-0.31695	0.65571	-0.018326	0.050162	-0.49877	-0.55451	0.8833	-0.071735	0.40661	-0.46078	-0.41304	0.1398	0.30091	-0.45544	-0.79498	-0.026451	0.49065	-0.0015944	-0.0067965	-0.61211	-0.13403	0.12914	-0.01774	0.0036303	-0.21134	-0.52825	-0.56244	4.9914	0.010109	0.0031954	0.21403	0.57711	-0.34766	3.5503	0.028776	0.17309	0.034632	-0.54715	-0.010237	-0.28699	-0.078537	-0.19645	0.44555	-0.21971	-0.40038	0.36541	-0.070541	
Amplification Peak  7 - CN values	11q13.3	chr11:69545150-70374929(probes 10912:10933)	chr11:69718775-70319230(probes 10929:10930)	chr11:68239923-72146168(probes 10801:11063)	2.3924e-31	 2.3924e-31		Actual Copy Change Given	6	6	6	1.9614	6	6	0.0025062	-0.76588	0.67522	-0.00014328	0.84722	-0.052963	-0.0035627	-0.0040099	0.3761	0	0.017692	2.5325	-0.088924	0.0023337	0.65412	-0.19905	0.0046293	6	-0.19153	0.35844	0.25157	1.8735	0.23417	-0.011771	6	0.21904	-0.12187	-0.085834	-0.45583	4.3019	2.1691	1.9937	6	0.0089719	0.15467	5.7186	0.034395	0.060061	0	0.1254	-0.25657	0.1983	-0.014962	1.1327	0.0010005	0.007458	0.0075176	6	0.013034	-0.21729	0.29766	0.25649	0.71376	-0.0077165	3.3365	-0.12678	0.0040266	0.89558	0.025376	2.6648	0.62167	6	1.0429	0.0039093	-0.37584	0.88238	0.0073329	-0.46919	6	0.052224	0.91333	-0.00092642	0	0.34027	0.61238	0.30013	3.6797	3.8961	0.0026557	0	6	-0.26462	0.33342	0.0050761	6	-0.00043671	0.020775	6	0.33122	0.029691	-0.083	0.39106	0.060069	5.4004	2.281	0.72353	0.056008	6	-0.040634	1.4153	0.013393	-0.048058	
Amplification Peak  8 - CN values	12q15  	chr12:68600593-70739579(probes 11946:11981)	chr12:69703695-69802930(probes 11965:11968)	chr12:68674961-70781203(probes 11947:11983)	0.038854	   0.038854		Actual Copy Change Given	0.01541	-0.1973	0.0085991	0.018802	0.039836	0.024829	-0.00021111	0.026681	0.038871	-0.0041904	0	0.62429	0.75935	0	0.38956	-0.025251	0.40582	0.53173	-0.28724	0	-0.01145	0.019042	0.51771	0.032693	0.0028483	0.31285	-0.027529	0.14565	0.00043572	0.0014511	-0.0049193	-0.15164	0.11947	0.16836	0.026573	-0.01316	-0.0025558	0.0029676	-0.013943	-0.0026621	0.0076696	0.023021	-0.015023	0.029738	-0.10365	0.13872	-0.0016411	0.00073724	0.0065203	-0.0035056	-0.011765	-0.11879	0.14558	0.0030806	-0.065896	0.16844	-0.15726	0.098208	0	0	0	0.015653	0.0015721	0.0030582	0.02846	0.008966	-0.21037	-0.026857	-0.1517	-0.0015816	0.01237	-0.034459	-0.014643	0	-0.14006	1.8343	0.044119	0.0024619	0.010877	0.34404	-0.60834	6	0.012917	-0.0057984	-0.0041576	-0.013651	0.12766	-0.23296	0.31488	-0.0010011	0.020707	6	0.0513	-0.097203	-0.0016483	0	0.12027	-0.027726	0.095067	-0.0031773	6	0	-0.16721	0.028049	-0.012489	-0.064508	0.56318	0.12169	
Amplification Peak  9 - CN values	17q12  	chr17:37561554-38464082(probes 14613:14624)	chr17:37634630-38024271(probes 14614:14623)	chr17:37634630-38531363(probes 14614:14626)	0.15727	    0.15727		Actual Copy Change Given	0.039081	-0.21292	-0.023929	-0.013353	-0.010072	0.05632	0.00249	0.1074	0.013715	0.073657	0.010232	-0.17028	-0.039343	-0.095207	0.33899	-0.095159	-0.065373	-0.073928	0.072456	0.067594	-0.069977	-0.1979	-0.056025	-0.069727	-0.050377	0.28133	-0.023373	-0.11175	-0.0090162	-0.024704	0.0036692	0.05035	0.22045	0.065123	-0.025114	0.04372	0.020195	0.46815	0.0019926	0.037199	0.051812	-0.10076	-0.12766	-0.01748	-0.0074811	0.12837	0.024082	0.022193	0.0080168	-0.036851	0.0024367	0.11031	0.34832	-0.3434	0.085147	-0.22624	6	0.0065676	-0.0096927	0.0075922	6	-0.031842	-0.1722	0.26945	-0.027824	-0.0067422	-0.0090586	0.9846	0.22525	-0.0029765	0.026281	0.29771	-0.054375	0.054594	0.10813	0.073687	0.45109	0.0079687	-0.022051	0.022919	-0.026957	-0.13804	-0.12693	-0.012604	-0.0032426	-0.023143	0.11488	0.029047	-0.038814	-0.023739	3.5741	0.00097311	-0.18262	-0.0036229	0.025217	-0.029554	-0.17711	-0.15435	-0.17464	-0.036742	-0.27731	-0.015231	-0.22173	-0.061093	-0.034749	-0.044077	-0.034146	0.10533	
Amplification Peak 10 - CN values	18q11.2	chr18:19750821-24904993(probes 15040:15157)	chr18:20662673-20702507(probes 15055:15056)	chr18:20662673-21268769(probes 15055:15059)	0.19828	    0.19828		Actual Copy Change Given	1.9207	0.26634	3.3687	-0.0096466	0.011798	-0.019266	0.21471	0	0.31822	-0.17075	0.90435	0.40535	1.6368	2.2628	0.44577	0.024876	-0.16535	-0.40597	0.15646	0.66797	-0.016724	-0.23222	-0.018337	0.0028983	0.19214	-0.046141	-0.014112	-0.17523	-0.027133	0.023834	-0.015718	-0.45622	-0.13408	0.1336	0.079442	-0.20413	0.01141	-0.25092	0.10122	-0.0067595	-0.03403	-0.16834	-0.070913	-0.021475	0.015333	0.02404	-0.26419	-0.20001	-0.0061867	0.0046307	-0.0084842	-0.23844	0.011288	-0.00513	-0.33599	-0.00048558	-0.67718	0.197	0.68953	-0.01729	-0.012102	0.6598	-0.1867	-0.34527	-0.019254	0.01334	-0.001308	0.99838	-0.5681	-0.0021988	-0.40993	-0.41281	-0.031002	-0.0036091	-0.43966	0.067217	0.39626	0.0051632	6	-0.012658	-0.55096	-0.14332	-0.19229	-0.020567	0	-0.053987	-0.084475	-0.26475	-0.32689	-0.0029776	0	-0.023116	-0.46902	-0.31699	2.2037	-0.018341	-0.0011332	-0.094067	-0.074515	-0.4024	-0.0054681	-0.00096959	-0.2202	-0.041695	-0.071096	0.050891	-0.012123	-0.054658	
Deletion Peak 1 - CN values	8p23.2	chr8:3505239-3868542(probes 7732:7749)    	chr8:3695988-3738402(probes 7738:7743)    	chr8:3695988-3872542(probes 7738:7751)    	0.13564	    0.13564		Actual Copy Change Given	-0.53935	0.08313	-0.057262	-0.45107	0.01167	-1.1664	-0.54763	0.03226	0.013193	-0.24918	-0.4529	0.73161	0.74618	-0.53917	1.1473	0.0065006	-0.7319	-0.45541	-0.34432	-0.0030358	-0.64391	-0.74354	0.46097	-0.78369	-0.37291	-0.06947	-0.15573	-0.07818	-0.24298	0.03335	-0.26349	0.42892	-0.71379	-0.18155	-0.22378	-0.20138	-0.22675	-0.24823	-0.38015	-0.060191	-0.48211	-0.67658	-0.24962	-0.26196	0.013824	-0.40748	-0.029694	-0.23846	0	-0.093017	-0.27616	-0.25236	-0.0042685	0.0027481	0.094834	-0.47249	-0.67407	-0.23863	-1.4675	-0.67412	-0.3583	0.0057714	-0.43234	-0.10037	0.030605	-0.50299	-0.56193	-0.075324	0.55852	-0.21251	-0.10492	-0.39833	-0.29992	-0.021086	0.12753	-0.80335	-0.050972	-0.5332	-0.414	-0.35885	-0.62242	0.19967	-0.42216	-0.51529	-0.15678	-0.18856	-0.49805	0.32322	-0.30383	0.0018598	-0.80827	-1.2011	-0.11222	-0.11755	-0.72709	0.01135	-0.06518	-0.35396	-0.58906	-0.42936	-0.60875	-0.02528	-0.8727	-0.49197	-0.32013	-0.59485	0.016414	-0.25291	
Deletion Peak 2 - CN values	9p21.3	chr9:21969802-21994304(probes 8990:8999)	chr9:21973950-21979760(probes 8995:8996)	chr9:21448286-22608295(probes 8937:9060)	9.5854e-19	 9.5854e-19		Actual Copy Change Given	-1.1281	-0.088268	-1.5	0	-0.84433	-0.38495	0	-0.00030204	-0.3678	0.23819	-0.016578	0.59947	-0.0094587	-0.51788	-0.099358	-0.011187	-0.65551	-1.1568	-0.30106	-0.42171	-0.643	-0.24583	-0.49461	-1.3507	-0.01134	-0.34789	-0.151	-0.88926	-0.71151	0.0096012	-0.73276	-0.8852	-0.12031	-1.1202	-0.70576	-0.54746	-0.45884	0.0030635	-1.0941	-0.3908	-0.42941	-0.0043613	0.080523	-0.83301	-0.6115	0.3163	-0.51083	-0.16501	-0.89781	0.53157	0.26403	0.14596	-0.005672	-1.3905	-0.61441	-0.092766	-0.5606	0.40368	-0.75637	-1.257	-0.89929	-0.31695	-0.72955	-1.035	0.050162	-0.49877	-0.55451	0.8833	0	-0.35506	-1.5	-0.41304	0.1398	0.30091	-0.45544	-1.5	-0.026451	-1.0314	-0.0015944	-0.0067965	-0.61211	-0.13403	0.040773	-0.01774	0.0036303	-0.21134	-0.52825	-0.56244	-0.67398	-0.76742	0.0031954	-1.1913	-1.0172	-0.34766	-1.4337	-0.50206	0.22585	-1.3062	-1.1811	-0.010237	-0.27697	-0.078537	-0.37923	-0.99504	-0.28739	-0.40038	-1.1462	-0.43267	
