
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/KIRC-TP/4472368/KIRC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/KIRC-TP/4434822/KIRC-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=KIRC-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KIRC-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/KIRC-TP/4434822/KIRC-TP.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/KIRC-TP/4472368/KIRC-TP.mergedcluster.txt"

nPatients in clinical file=503, in cluster file=513, common to both=503
[1]  12 503
[1] "MRNA_CNMF"
[1] 3
 1  2  3 
34 24 14 
 1  2  3 
34 24 14 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
15 33 24 
 1  2  3 
15 33 24 
[1] "CN_CNMF"
[1] 3
  1   2   3 
161 211 122 
  1   2   3 
161 211 122 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
 97 114  74 
  1   2   3 
 97 114  74 
[1] "RPPA_CNMF"
[1] 3
  1   2   3   4   5   6 
101  90  86  76  44  57 
  1   2   3   4   5   6 
101  90  86  76  44  57 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
189 153 112 
  1   2   3 
189 153 112 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
199 180 101 
  1   2   3 
199 180 101 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 73 215 192 
  1   2   3 
 73 215 192 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
114 211 157 
  1   2   3 
114 211 157 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
160  37 285 
  1   2   3 
160  37 285 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3 
50 97 71 
 1  2  3 
50 97 71 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
  1   2   3 
106  19  93 
  1   2   3 
106  19  93 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "KARNOFSKYPERFORMANCESCORE"             
[15] "HISTOLOGICALTYPE"                      
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "YEAROFTOBACCOSMOKINGONSET"             
[19] "BATCHNUMBER"                           

Input Data has 19 rows and 503 columns.

[1] "Batch" "19"   
[1] "Last Follow UP"
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3313 TCGA-A3-3316 
        1120         1436           16         1190          735         1493 
TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 
        1491         1130         1508         1477         1105         1186 
TCGA-A3-3325 TCGA-A3-3326 TCGA-A3-3328 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3335 
         751         1137          785          706         1485          664 
TCGA-A3-3336 TCGA-A3-3343 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3349 TCGA-A3-3351 
        1043          944          137         1610         1385          910 
TCGA-A3-3352 TCGA-A3-3357 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3363 
         561         1425         1307         1286         1559          319 
TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3373 TCGA-A3-3374 
         872         1054          776          735          334         1313 
TCGA-A3-3376 TCGA-A3-3378 TCGA-A3-3380 TCGA-A3-3382 TCGA-A3-3383 TCGA-A3-3385 
        1070          630          567          574          861          726 
TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3426 TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3429 
         616         3343          884         2566         2223         2017 
TCGA-AK-3430 TCGA-AK-3431 TCGA-AK-3433 TCGA-AK-3434 TCGA-AK-3436 TCGA-AK-3440 
         480         1853         2192         2086         2043         1744 
TCGA-AK-3443 TCGA-AK-3444 TCGA-AK-3445 TCGA-AK-3447 TCGA-AK-3450 TCGA-AK-3451 
        1423         1471         1279         1217         1779         1481 
TCGA-AK-3453 TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3456 TCGA-AK-3458 TCGA-AK-3460 
        1396          873          683         1142         1168          951 
TCGA-AK-3461 TCGA-AK-3465 TCGA-AS-3777 TCGA-AS-3778 TCGA-B0-4688 TCGA-B0-4690 
         853          369           40           NA           98           43 
TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 
         139           77          106          866           NA           42 
TCGA-B0-4699 TCGA-B0-4700 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4706 TCGA-B0-4707 
         109           NA          208          182           26          599 
TCGA-B0-4710 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 
          95         1337          201            3          616          266 
TCGA-B0-4811 TCGA-B0-4813 TCGA-B0-4814 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 
        1196           18           47         1491         1081          848 
TCGA-B0-4818 TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4823 TCGA-B0-4824 
         426          183         1229         1111          454         1463 
TCGA-B0-4827 TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4834 TCGA-B0-4836 TCGA-B0-4837 
         884          307           NA           NA           NA           NA 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 TCGA-B0-4842 TCGA-B0-4843 TCGA-B0-4844 
          NA           NA          139         1636          320          313 
TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4848 TCGA-B0-4849 TCGA-B0-4852 
        1985         1199          792          882           69         1079 
TCGA-B0-4945 TCGA-B0-5075 TCGA-B0-5077 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5083 
        2145          608         1291          222          233          465 
TCGA-B0-5084 TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 
         221          769          433          459          333          245 
TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5102 
          67          665         1584          485         1913         2763 
TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5110 
        2751         1597          927          911          586         1092 
TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5117 TCGA-B0-5119 TCGA-B0-5120 
         359          797          657          535           59          493 
TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5400 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5691 
         554          652         1132          449         2407         3431 
TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 
        1487         3075          469         1420         1727         1835 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5701 TCGA-B0-5702 TCGA-B0-5703 
        2583         2740         1082         1732         1604         1202 
TCGA-B0-5705 TCGA-B0-5706 TCGA-B0-5707 TCGA-B0-5709 TCGA-B0-5710 TCGA-B0-5711 
        3668         2414         2828         3116         1461         2931 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-3923 TCGA-B2-3924 TCGA-B2-4098 
        2722         1864         2963          362          371           50 
TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5636 
         373          188          202          358          315          265 
TCGA-B2-5639 TCGA-B2-5641 TCGA-B2-A4SR TCGA-B4-5377 TCGA-B4-5378 TCGA-B4-5832 
         417          324          343          291          175            7 
TCGA-B4-5834 TCGA-B4-5835 TCGA-B4-5836 TCGA-B4-5838 TCGA-B4-5843 TCGA-B4-5844 
          38           16          141          166           11            7 
TCGA-B8-4143 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 
         709          511          826          837          761          749 
TCGA-B8-4619 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-4622 TCGA-B8-5158 TCGA-B8-5159 
          19          226          431          181          293          240 
TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5164 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 
          22            4           23            8          522          505 
TCGA-B8-5549 TCGA-B8-5550 TCGA-B8-5551 TCGA-B8-5552 TCGA-B8-5553 TCGA-BP-4158 
         194          434           15          392          435         3377 
TCGA-BP-4159 TCGA-BP-4160 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4163 TCGA-BP-4164 
        2600         2881         2746         3074         2839          992 
TCGA-BP-4165 TCGA-BP-4166 TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4170 TCGA-BP-4173 
        3037           13         2718          701         2343         1893 
TCGA-BP-4174 TCGA-BP-4176 TCGA-BP-4177 TCGA-BP-4325 TCGA-BP-4326 TCGA-BP-4327 
        1879         1955         1670         2964         1624          108 
TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4331 TCGA-BP-4332 TCGA-BP-4334 TCGA-BP-4335 
         845         1888         2453         1133           NA          460 
TCGA-BP-4337 TCGA-BP-4338 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4342 TCGA-BP-4343 
           2         2859          562         1589         2256           NA 
TCGA-BP-4344 TCGA-BP-4345 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4351 
        1666         1516         1493         1367          372          969 
TCGA-BP-4352 TCGA-BP-4353 TCGA-BP-4354 TCGA-BP-4355 TCGA-BP-4756 TCGA-BP-4758 
         344          375         1034          953          374         2208 
TCGA-BP-4759 TCGA-BP-4760 TCGA-BP-4761 TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4765 
        2372         2361          182         1343         1270         2184 
TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4771 TCGA-BP-4774 
        1462          400         1876          329          161         1884 
TCGA-BP-4775 TCGA-BP-4776 TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4782 TCGA-BP-4784 
        1842          410         1731         2080          354         1854 
TCGA-BP-4787 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4797 TCGA-BP-4798 
          NA         1489           NA          620         1107           NA 
TCGA-BP-4799 TCGA-BP-4801 TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4959 
          NA         1124          203         1459          211         2660 
TCGA-BP-4960 TCGA-BP-4961 TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4964 TCGA-BP-4965 
        2172         1935         1785         1834         1862         1871 
TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4969 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4972 
         204         1745         1794          432         1487         1501 
TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4981 
        1384           NA         1433         1632          454         1097 
TCGA-BP-4982 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4987 TCGA-BP-4988 
        1013         1412          951          785         1124          827 
TCGA-BP-4989 TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 TCGA-BP-4994 TCGA-BP-4995 
         117         1413          500          176         1307         1371 
TCGA-BP-4998 TCGA-BP-4999 TCGA-BP-5000 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 
         931         1266          563         1177         1126          840 
TCGA-BP-5007 TCGA-BP-5008 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5168 TCGA-BP-5169 
        1140         1071         1102          877         1463          192 
TCGA-BP-5170 TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5175 TCGA-BP-5176 TCGA-BP-5177 
        2411           NA         2257          932         1590          293 
TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5181 TCGA-BP-5182 TCGA-BP-5183 TCGA-BP-5184 
        1912         2263         1495         1165         1291         1133 
TCGA-BP-5185 TCGA-BP-5186 TCGA-BP-5187 TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5191 
        1132          693          406          822         1010          966 
TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 
         714          408          748         1018          603         1354 
TCGA-BP-5200 TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4635 TCGA-CJ-4636 
        1063          951           29         1820         1416         1924 
TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4639 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4642 
        2227          431         2308         1998         1661         1627 
TCGA-CJ-4643 TCGA-CJ-4644 TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4870 TCGA-CJ-4871 
        1792          336          645         2554         1497         2422 
TCGA-CJ-4872 TCGA-CJ-4873 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 
        1435         2258         2283         2353         1955         2186 
TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 
        2013         1883         1759         2125         1951          931 
TCGA-CJ-4888 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4891 TCGA-CJ-4892 TCGA-CJ-4893 
        1566         1945         2085           NA         1520          749 
TCGA-CJ-4894 TCGA-CJ-4895 TCGA-CJ-4897 TCGA-CJ-4899 TCGA-CJ-4900 TCGA-CJ-4901 
         841         1200         1808         1527         1274         1450 
TCGA-CJ-4902 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 
        1519         1559         1792         1495         1498         1530 
TCGA-CJ-4912 TCGA-CJ-4913 TCGA-CJ-4916 TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-4923 
        1656         1173         1372           92          139          572 
TCGA-CJ-5671 TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5678 
        1942         2190         2429         2575          782          573 
TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 
         678          768          551         1883         1889         2230 
TCGA-CJ-5686 TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6031 
        2038         1620         1855         1625         2298         1905 
TCGA-CJ-6032 TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5584 
        2548          224         1964         2799         2489          164 
TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5588 TCGA-CW-5589 TCGA-CW-5590 TCGA-CW-5591 
        2609         2226         2016         2377           NA         2270 
TCGA-CW-6087 TCGA-CW-6088 TCGA-CW-6090 TCGA-CW-6093 TCGA-CW-6096 TCGA-CW-6097 
          41         2311         2552         2430         2127          570 
TCGA-CZ-4853 TCGA-CZ-4854 TCGA-CZ-4856 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4859 
         774         1404           18           NA           NA         1787 
TCGA-CZ-4860 TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4865 
          NA           NA         1843         1927         2830          165 
TCGA-CZ-4866 TCGA-CZ-5451 TCGA-CZ-5452 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 
        1867         1929         1789           25          722          561 
TCGA-CZ-5456 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5461 
        1712         1682         1731         1682         1430          330 
TCGA-CZ-5462 TCGA-CZ-5463 TCGA-CZ-5464 TCGA-CZ-5465 TCGA-CZ-5466 TCGA-CZ-5467 
         311          662         1740         1446          685           73 
TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5982 TCGA-CZ-5984 TCGA-CZ-5985 
          59          945          386         2439         2066         1997 
TCGA-CZ-5986 TCGA-CZ-5987 TCGA-CZ-5988 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 
         373          435          693         1905         1329         1398 
TCGA-DV-5567 TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5575 
         909          370          355         1130          723         1005 
TCGA-DV-5576 TCGA-EU-5904 TCGA-EU-5905 TCGA-EU-5906 TCGA-EU-5907 
         727          550          118          206          126 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=157,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=441,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=418,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 15:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=3,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=2,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 19:'BATCH.NUMBER':	nDistinctValues=30,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "NEOPLASM.DISEASESTAGE"      
[3] "PATHOLOGY.T.STAGE"           "PATHOLOGY.N.STAGE"          
[5] "PATHOLOGY.M.STAGE"           "GENDER"                     
[7] "KARNOFSKY.PERFORMANCE.SCORE" "NUMBERPACKYEARSSMOKED"      
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 503 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=4, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
249  65 178  11 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
249  65 178  11 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
249  65 178  11 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
249  65 178  11 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=5, binary=FALSE, numeric=TRUE
NUMBERPACKYEARSSMOKED, nv=3, binary=FALSE, numeric=TRUE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 29  4
  subtype2 15  9
  subtype3 13  1
subtype1 subtype2 subtype3 
      33       24       14 
subtype1 subtype2 subtype3 
       4        9        1 
$subtype1
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.56        38.99        24.69 
TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 
       37.38        23.21        48.82        31.04        45.53        29.92 
TCGA-A3-3352 TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3372 TCGA-A3-3380 
       18.44        42.28        51.25        28.67        24.16        18.64 
TCGA-A3-3383 TCGA-AK-3444 TCGA-AK-3455 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4102 
       28.31        48.36        22.45        12.20        12.26         6.64 
TCGA-B8-4151 TCGA-B8-4154 TCGA-B8-4619 TCGA-BP-4162 TCGA-BP-4164 TCGA-CJ-4634 
       27.52        24.62         0.62       101.06        32.61        59.84 
TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 
       75.88        58.92        11.05 

$subtype2
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 
        0.53        39.12        49.08        49.02        37.15        36.33 
TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3374 TCGA-A3-3378 TCGA-A3-3382 
       21.83         4.50        52.93        43.17        20.71        18.87 
TCGA-AK-3426 TCGA-B2-4098 TCGA-B8-4143 TCGA-B8-4620 TCGA-BP-4161 TCGA-BP-4163 
       29.06         1.64        23.31         7.43        90.28        93.34 
TCGA-BP-4167 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       89.36        63.25        73.22        14.17        65.69        54.61 

$subtype3
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3336 TCGA-A3-3363 TCGA-AK-3427 TCGA-AK-3440 
       24.16        25.81        34.29        10.49        84.36        57.34 
TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 
       46.78        40.01        45.90        37.55        12.13         1.32 
TCGA-B2-3923 TCGA-B8-4148 
       11.90        27.16 

subtype1 subtype2 subtype3 
    0.62     0.53     1.32 
subtype1 subtype2 subtype3 
  101.06    93.34    84.36 
subtype1 subtype2 subtype3 
  31.040   38.135   30.725 
[1] "0.6 - 101.1 (31.0)" "0.5 - 93.3 (38.1)"  "1.3 - 84.4 (30.7)" 
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
D1V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      23        4         6        1
  subtype2       9        3         8        4
  subtype3       8        6         0        0
D1V3, multiclass
          vv
clus       T1 T2 T3
  subtype1 23  4  7
  subtype2 10  4 10
  subtype3  8  6  0
D1V4, multiclass
D1V5, binary
          cls
clus        0  1
  subtype1 18  0
  subtype2 10  3
  subtype3  7  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   18    0
  subtype2   10    3
  subtype3    7    0
   clus
vv  subtype1 subtype2 subtype3
  0       18       10        7
  1        0        3        0
D1V6, binary
          cls
clus        0  1
  subtype1 33  1
  subtype2 20  4
  subtype3 14  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33    1
  subtype2   20    4
  subtype3   14    0
    clus
vv   subtype1 subtype2 subtype3
  M0       33       20       14
  M1        1        4        0
D1V7, binary
          cls
clus        0  1
  subtype1 15 19
  subtype2 10 14
  subtype3  4 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   19
  subtype2   10   14
  subtype3    4   10
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       15       10        4
  MALE         19       14       10
D1V8, continuous
[1] "Remove cluster labels:" "subtype2"              
clus
subtype2 
       1 
character(0)
D1V9, continuous

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1 13  2
  subtype2 28  4
  subtype3 16  8
subtype1 subtype2 subtype3 
      15       32       24 
subtype1 subtype2 subtype3 
       2        4        8 
$subtype1
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3336 TCGA-A3-3363 TCGA-AK-3427 TCGA-AK-3440 
       24.16        25.81        34.29        10.49        84.36        57.34 
TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 
       46.78        40.01        45.90        37.55        12.13         1.32 
TCGA-B2-3923 TCGA-B2-4098 TCGA-B8-4148 
       11.90         1.64        27.16 

$subtype2
TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 TCGA-A3-3326 
       47.21        49.58        48.56        38.99        24.69        37.38 
TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 TCGA-A3-3352 
       23.21        48.82        31.04        45.53        29.92        18.44 
TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3372 TCGA-A3-3380 TCGA-A3-3383 
       42.28        51.25        28.67        24.16        18.64        28.31 
TCGA-AK-3444 TCGA-AK-3455 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4102 TCGA-B8-4151 
       48.36        22.45        12.20        12.26         6.64        27.52 
TCGA-B8-4154 TCGA-B8-4619 TCGA-BP-4162 TCGA-BP-4164 TCGA-CJ-4634 TCGA-CJ-4639 
       24.62         0.62       101.06        32.61        59.84        75.88 
TCGA-CJ-4643 TCGA-CJ-4644 
       58.92        11.05 

$subtype3
TCGA-A3-3306 TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 
       36.82         0.53        39.12        49.08        49.02        37.15 
TCGA-A3-3323 TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3374 TCGA-A3-3378 
       36.33        21.83         4.50        52.93        43.17        20.71 
TCGA-A3-3382 TCGA-AK-3426 TCGA-B8-4143 TCGA-B8-4620 TCGA-BP-4161 TCGA-BP-4163 
       18.87        29.06        23.31         7.43        90.28        93.34 
TCGA-BP-4167 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       89.36        63.25        73.22        14.17        65.69        54.61 

subtype1 subtype2 subtype3 
    1.32     0.62     0.53 
subtype1 subtype2 subtype3 
   84.36   101.06    93.34 
subtype1 subtype2 subtype3 
  27.160   30.480   38.135 
[1] "1.3 - 84.4 (27.2)"  "0.6 - 101.1 (30.5)" "0.5 - 93.3 (38.1)" 
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[55] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[55] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[55] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
D2V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1       9        6         0        0
  subtype2      22        4         6        1
  subtype3       9        3         8        4
D2V3, multiclass
          vv
clus       T1 T2 T3
  subtype1  9  6  0
  subtype2 22  4  7
  subtype3 10  4 10
D2V4, multiclass
D2V5, binary
          cls
clus        0  1
  subtype1  7  0
  subtype2 17  0
  subtype3 11  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    0
  subtype2   17    0
  subtype3   11    3
   clus
vv  subtype1 subtype2 subtype3
  0        7       17       11
  1        0        0        3
D2V6, binary
          cls
clus        0  1
  subtype1 15  0
  subtype2 32  1
  subtype3 20  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15    0
  subtype2   32    1
  subtype3   20    4
    clus
vv   subtype1 subtype2 subtype3
  M0       15       32       20
  M1        0        1        4
D2V7, binary
          cls
clus        0  1
  subtype1  5 10
  subtype2 15 18
  subtype3  9 15
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   10
  subtype2   15   18
  subtype3    9   15
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        5       15        9
  MALE         10       18       15
D2V8, continuous
[1] "Remove cluster labels:" "subtype3"              
clus
subtype3 
       1 
character(0)
D2V9, continuous

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1  90  71
  subtype2 160  50
  subtype3  80  42
subtype1 subtype2 subtype3 
     161      210      122 
subtype1 subtype2 subtype3 
      71       50       42 
$subtype1
TCGA-A3-3306 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3320 
       36.82        39.12        49.08        49.02        37.15        49.58 
TCGA-A3-3325 TCGA-A3-3335 TCGA-A3-3336 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3352 
       24.69        21.83        34.29         4.50        52.93        18.44 
TCGA-A3-3372 TCGA-A3-3382 TCGA-AK-3425 TCGA-AK-3426 TCGA-AK-3430 TCGA-AK-3434 
       24.16        18.87       109.91        29.06        15.78        68.58 
TCGA-AK-3436 TCGA-AK-3445 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3458 TCGA-AK-3461 
       67.17        42.05        58.49        28.70        38.40        28.04 
TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4707 TCGA-B0-4712 
        1.41         4.57         3.48        28.47        19.69        43.96 
TCGA-B0-4713 TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4821 TCGA-B0-4828 TCGA-B0-4836 
        6.61         0.59        49.02        40.41        10.09        40.70 
TCGA-B0-4838 TCGA-B0-4842 TCGA-B0-4845 TCGA-B0-4848 TCGA-B0-5084 TCGA-B0-5092 
       27.42        53.79        65.26        29.00         7.27        15.09 
TCGA-B0-5094 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5098 TCGA-B0-5102 TCGA-B0-5109 
       10.95         8.05         2.20        52.08        90.84        19.27 
TCGA-B0-5113 TCGA-B0-5116 TCGA-B0-5402 TCGA-B0-5694 TCGA-B0-5701 TCGA-B0-5703 
       11.80        21.60        14.76        15.42        56.94        39.52 
TCGA-B2-5633 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 TCGA-B4-5843 TCGA-B8-4143 
       11.77        10.65         0.23         0.53         0.36        23.31 
TCGA-B8-4620 TCGA-B8-5158 TCGA-B8-5163 TCGA-B8-5549 TCGA-B8-5551 TCGA-BP-4161 
        7.43         9.63         0.13         6.38         0.49        90.28 
TCGA-BP-4164 TCGA-BP-4174 TCGA-BP-4176 TCGA-BP-4325 TCGA-BP-4331 TCGA-BP-4338 
       32.61        61.78        64.27        97.45        80.65        93.99 
TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4351 TCGA-BP-4352 TCGA-BP-4353 TCGA-BP-4756 
       74.17        62.86        31.86        11.31        12.33        12.30 
TCGA-BP-4761 TCGA-BP-4763 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4771 TCGA-BP-4781 
        5.98        41.75        48.07        13.15         5.29        68.38 
TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4803 TCGA-BP-4959 TCGA-BP-4960 
       15.75        36.39        10.98         6.67        87.45        71.41 
TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4971 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4989 
       58.68        60.30        48.89        31.27        25.81         3.85 
TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5173 TCGA-BP-5175 
       16.44        18.51        28.83         6.31         1.78        30.64 
TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5183 TCGA-BP-5185 TCGA-BP-5189 TCGA-BP-5191 
       62.86        74.40        42.44        37.22        27.02        31.76 
TCGA-BP-5198 TCGA-BP-5201 TCGA-CJ-4635 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4644 
       19.82        31.27        46.55        14.17        65.69        11.05 
TCGA-CJ-4871 TCGA-CJ-4873 TCGA-CJ-4876 TCGA-CJ-4881 TCGA-CJ-4893 TCGA-CJ-4895 
       79.63        74.24        64.27        66.18        24.62        39.45 
TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4903 TCGA-CJ-4912 TCGA-CJ-5675 TCGA-CJ-5677 
       41.88        47.67        51.25        54.44        79.86        25.71 
TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5682 TCGA-CJ-5689 TCGA-CJ-6027 
       18.84        22.29        25.25        61.91        53.26        60.99 
TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6032 TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5584 
       53.42        75.55        83.77         7.36        64.57         5.39 
TCGA-CW-5591 TCGA-CW-6090 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 
       74.63        83.90        46.16        47.08        69.21         6.74 
TCGA-CZ-4864 TCGA-CZ-5452 TCGA-CZ-5456 TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5462 
       93.04        58.82        56.28        47.01        10.85        10.22 
TCGA-CZ-5464 TCGA-CZ-5465 TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 
       57.21        47.54        22.52         1.94        31.07        67.92 
TCGA-CZ-5985 TCGA-CZ-5987 TCGA-DV-5565 TCGA-DV-5575 TCGA-EU-5907 
       65.65        14.30        43.69        33.04         4.14 

$subtype2
TCGA-A3-3307 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 TCGA-A3-3326 TCGA-A3-3331 
       47.21        48.56        36.33        38.99        37.38        48.82 
TCGA-A3-3343 TCGA-A3-3351 TCGA-A3-3357 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3362 
       31.04        29.92        46.85        42.97        42.28        51.25 
TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3373 TCGA-A3-3378 TCGA-A3-3380 
       28.67        34.65        25.51        10.98        20.71        18.64 
TCGA-A3-3383 TCGA-A3-3387 TCGA-AK-3428 TCGA-AK-3429 TCGA-AK-3431 TCGA-AK-3444 
       28.31        20.25        73.08        66.31        60.92        48.36 
TCGA-AK-3451 TCGA-AK-3455 TCGA-AK-3460 TCGA-B0-4693 TCGA-B0-4703 TCGA-B0-4706 
       48.69        22.45        31.27         2.53         5.98         0.85 
TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4823 
        0.10        20.25         8.75         1.55        14.01        14.93 
TCGA-B0-4824 TCGA-B0-4827 TCGA-B0-4833 TCGA-B0-4837 TCGA-B0-4841 TCGA-B0-4843 
       48.10        29.06        78.41        45.30         4.57        10.52 
TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4945 TCGA-B0-5075 TCGA-B0-5077 
       39.42        26.04         2.27        70.52        19.99        42.44 
TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5099 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5115 
       25.28        14.24        15.95        90.44        35.90        26.20 
TCGA-B0-5119 TCGA-B0-5120 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5690 TCGA-B0-5692 
        1.94        16.21        18.21        21.44        79.13        48.89 
TCGA-B0-5693 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 TCGA-B0-5698 TCGA-B0-5699 
      101.10        46.68        56.78        60.33        84.92        90.08 
TCGA-B0-5705 TCGA-B0-5706 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5713 TCGA-B0-5812 
      120.59        79.36        48.03        96.36        61.28        97.41 
TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5639 TCGA-B2-A4SR 
       12.20        12.26         6.18         6.64        13.71        11.28 
TCGA-B4-5377 TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 
        9.57         1.25         4.64         0.23        16.80        27.16 
TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5552 
       27.52        25.02        24.62         7.89         0.76        12.89 
TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4160 TCGA-BP-4162 TCGA-BP-4163 
       14.30       111.02        85.48        94.72       101.06        93.34 
TCGA-BP-4165 TCGA-BP-4166 TCGA-BP-4169 TCGA-BP-4170 TCGA-BP-4326 TCGA-BP-4327 
       99.85         0.43        23.05        77.03        53.39         3.55 
TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4332 TCGA-BP-4335 TCGA-BP-4340 TCGA-BP-4341 
       27.78        62.07        37.25        15.12        18.48        52.24 
TCGA-BP-4344 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4355 TCGA-BP-4758 
       54.77        49.08        44.94        12.23        31.33        72.59 
TCGA-BP-4765 TCGA-BP-4774 TCGA-BP-4776 TCGA-BP-4777 TCGA-BP-4789 TCGA-BP-4801 
       71.80        61.94        13.48        56.91        48.95        36.95 
TCGA-BP-4807 TCGA-BP-4965 TCGA-BP-4969 TCGA-BP-4972 TCGA-BP-4974 TCGA-BP-4975 
        6.94        61.51        58.98        49.35         7.23        47.11 
TCGA-BP-4977 TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4993 
       14.93        36.07        33.30        36.95        46.45         5.79 
TCGA-BP-4995 TCGA-BP-4999 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 
       45.07        41.62        38.70        37.02        27.62        37.48 
TCGA-BP-5008 TCGA-BP-5168 TCGA-BP-5170 TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5177 
       35.21        48.10        79.27        74.20        52.27         9.63 
TCGA-BP-5181 TCGA-BP-5182 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5187 TCGA-BP-5190 
       49.15        38.30        37.25        22.78        13.35        33.21 
TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5202 
       23.47        13.41        24.59        44.52        34.95         0.95 
TCGA-CJ-4634 TCGA-CJ-4636 TCGA-CJ-4639 TCGA-CJ-4641 TCGA-CJ-4642 TCGA-CJ-4643 
       59.84        63.25        75.88        54.61        53.49        58.92 
TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4870 TCGA-CJ-4874 TCGA-CJ-4878 TCGA-CJ-4884 
       21.21        83.97        49.22        75.06        71.87        57.83 
TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 TCGA-CJ-4894 TCGA-CJ-4899 
       69.86        64.14        30.61        49.97        27.65        50.20 
TCGA-CJ-4902 TCGA-CJ-4904 TCGA-CJ-4908 TCGA-CJ-4916 TCGA-CJ-5672 TCGA-CJ-5681 
       49.94        58.92        50.30        45.11        72.00        18.12 
TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5585 TCGA-CW-5587 
       62.10        73.32        92.02        81.83        85.78        73.18 
TCGA-CW-5589 TCGA-CW-6088 TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4865 
       78.15        75.98        25.45         0.59        58.75         5.42 
TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5458 TCGA-CZ-5459 
       63.42         0.82        23.74        18.44        56.91        55.30 
TCGA-CZ-5463 TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5988 TCGA-CZ-5989 
       21.76         2.40        80.19        12.26        22.78        62.63 
TCGA-DV-5566 TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5573 TCGA-EU-5904 TCGA-EU-5906 
       45.96        12.16        11.67        37.15        18.08         6.77 

$subtype3
TCGA-A3-3308 TCGA-A3-3313 TCGA-A3-3349 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3376 
        0.53        24.16        45.53        10.49        43.17        35.18 
TCGA-A3-3385 TCGA-AK-3427 TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3447 
       23.87        84.36        72.07        57.34        46.78        40.01 
TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4688 TCGA-B0-4697 
       45.90        37.55        12.13         1.32         3.22        18.97 
TCGA-B0-4698 TCGA-B0-4699 TCGA-B0-4700 TCGA-B0-4701 TCGA-B0-4710 TCGA-B0-4811 
        1.38         3.58        65.06         6.84         3.12        39.32 
TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4822 TCGA-B0-4834 TCGA-B0-4839 
       35.54        27.88         6.02        36.53        68.71        53.85 
TCGA-B0-4844 TCGA-B0-4852 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5097 TCGA-B0-5100 
       10.29        35.47         7.30         7.66        21.86        62.89 
TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5117 TCGA-B0-5400 TCGA-B0-5691 
       52.50        30.48        29.95        17.59        37.22       112.80 
TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5712 TCGA-B2-3923 TCGA-B2-4098 TCGA-B2-5635 
       52.73       102.44        89.49        11.90         1.64        10.36 
TCGA-B4-5378 TCGA-B4-5838 TCGA-B8-4619 TCGA-B8-4621 TCGA-B8-4622 TCGA-B8-5162 
        5.75         5.46         0.62        14.17         5.95         0.72 
TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5550 TCGA-BP-4167 TCGA-BP-4173 
        0.26        17.16        16.60        14.27        89.36        62.24 
TCGA-BP-4177 TCGA-BP-4334 TCGA-BP-4337 TCGA-BP-4354 TCGA-BP-4759 TCGA-BP-4760 
       54.90        21.21         0.07        33.99        77.98        77.62 
TCGA-BP-4762 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4775 TCGA-BP-4782 TCGA-BP-4784 
       44.15        61.68        10.82        60.56        11.64        60.95 
TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4799 TCGA-BP-4804 TCGA-BP-4961 TCGA-BP-4964 
       36.53        20.38        37.25        47.97        63.62        61.22 
TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4970 TCGA-BP-4973 TCGA-BP-4976 TCGA-BP-4983 
        6.71        57.37        14.20        45.50        53.65        46.42 
TCGA-BP-4988 TCGA-BP-4994 TCGA-BP-4998 TCGA-BP-5009 TCGA-BP-5196 TCGA-CJ-4637 
       27.19        42.97        30.61        36.23        33.47        73.22 
TCGA-CJ-4872 TCGA-CJ-4875 TCGA-CJ-4882 TCGA-CJ-4888 TCGA-CJ-4889 TCGA-CJ-4890 
       47.18        77.36        61.91        51.48        63.95        68.55 
TCGA-CJ-4891 TCGA-CJ-4897 TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4913 TCGA-CJ-4918 
       26.89        59.44        49.15        49.25        38.56         3.02 
TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5686 TCGA-CJ-6031 
        4.57        18.81        63.85        84.66        67.00        62.63 
TCGA-CW-5588 TCGA-CW-6087 TCGA-CW-6093 TCGA-CW-6097 TCGA-CZ-4861 TCGA-CZ-4862 
       66.28         1.35        79.89        18.74        14.63        60.59 
TCGA-CZ-4863 TCGA-CZ-4866 TCGA-CZ-5457 TCGA-CZ-5470 TCGA-DV-5567 TCGA-DV-5574 
       63.35        61.38        55.30        12.69        29.88        23.77 
TCGA-DV-5576 TCGA-EU-5905 
       23.90         3.88 

subtype1 subtype2 subtype3 
    0.13     0.10     0.07 
subtype1 subtype2 subtype3 
  109.91   120.59   112.80 
subtype1 subtype2 subtype3 
   31.86    37.25    36.38 
[1] "0.1 - 109.9 (31.9)" "0.1 - 120.6 (37.2)" "0.1 - 112.8 (36.4)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[205] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[229] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[241] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[253] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[259] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[277] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[283] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[295] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[307] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[313] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[319] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[325] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[337] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[343] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[355] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[361] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[373] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[379] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[391] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[397] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[403] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[409] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[415] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[421] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[427] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[433] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[439] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[445] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[451] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[457] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[463] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[469] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[475] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[481] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[487] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[493] "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[205] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[229] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[241] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[253] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[259] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[277] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[283] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[295] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[307] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[313] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[319] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[325] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[337] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[343] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[355] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[361] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[373] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[379] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[391] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[397] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[403] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[409] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[415] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[421] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[427] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[433] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[439] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[445] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[451] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[457] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[463] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[469] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[475] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[481] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[487] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[493] "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[127] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[205] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[229] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[241] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[253] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[259] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[277] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[283] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[295] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[307] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[313] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[319] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[325] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[337] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[343] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[355] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[361] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[367] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[373] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[379] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[385] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[391] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[397] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[403] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[409] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[415] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[421] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[427] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[433] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[439] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[445] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[451] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[457] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[463] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[469] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[475] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[481] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[487] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[493] "subtype1"
D3V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      57       17        49       38
  subtype2     122       23        47       19
  subtype3      58       14        29       21
D3V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1  61  21  75   4
  subtype2 122  27  61   1
  subtype3  59  17  40   6
D3V4, multiclass
D3V5, binary
          cls
clus         0   1
  subtype1  72  11
  subtype2 101   3
  subtype3  55   4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   72   11
  subtype2  101    3
  subtype3   55    4
   clus
vv  subtype1 subtype2 subtype3
  0       72      101       55
  1       11        3        4
D3V6, binary
          cls
clus         0   1
  subtype1 123  38
  subtype2 191  20
  subtype3 103  19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  123   38
  subtype2  191   20
  subtype3  103   19
    clus
vv   subtype1 subtype2 subtype3
  M0      123      191      103
  M1       38       20       19
D3V7, binary
          cls
clus         0   1
  subtype1  39 122
  subtype2  86 125
  subtype3  46  76
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39  122
  subtype2   86  125
  subtype3   46   76
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39       86       46
  MALE        122      125       76
D3V8, continuous
D3V9, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype2"              
[4] "subtype3"              
clus
subtype1 subtype2 subtype3 
       1        2        1 
character(0)

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 48 49
  subtype2 96 18
  subtype3 46 28
subtype1 subtype2 subtype3 
      97      114       74 
subtype1 subtype2 subtype3 
      49       18       28 
$subtype1
TCGA-A3-3357 TCGA-A3-3367 TCGA-A3-3387 TCGA-AK-3434 TCGA-AK-3445 TCGA-B0-4688 
       46.85        34.65        20.25        68.58        42.05         3.22 
TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4696 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4706 
        4.57         2.53        28.47         6.84         5.98         0.85 
TCGA-B0-4707 TCGA-B0-4710 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 
       19.69         3.12        43.96         6.61         0.10        20.25 
TCGA-B0-4810 TCGA-B0-4811 TCGA-B0-4813 TCGA-B0-4814 TCGA-B0-4821 TCGA-B0-4822 
        8.75        39.32         0.59         1.55        40.41        36.53 
TCGA-B0-4827 TCGA-B0-4828 TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4845 TCGA-B0-4848 
       29.06        10.09        10.52        10.29        65.26        29.00 
TCGA-B0-5094 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5106 
       10.95         2.20        21.86        15.95        62.89        52.50 
TCGA-B0-5107 TCGA-B0-5116 TCGA-B0-5121 TCGA-B0-5402 TCGA-B0-5694 TCGA-B0-5696 
       30.48        21.60        18.21        14.76        15.42        56.78 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5712 TCGA-B4-5838 
       84.92        90.08        56.94        79.36        89.49         5.46 
TCGA-B8-4153 TCGA-B8-4622 TCGA-B8-5158 TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5178 
       25.02         5.95         9.63        28.83         6.31        62.86 
TCGA-BP-5180 TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5198 TCGA-BP-5201 TCGA-CJ-4901 
       74.40        27.02        33.21        19.82        31.27        47.67 
TCGA-CJ-4902 TCGA-CJ-4907 TCGA-CJ-4912 TCGA-CJ-4913 TCGA-CJ-4920 TCGA-CJ-5671 
       49.94        49.25        54.44        38.56         4.57        63.85 
TCGA-CJ-5675 TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5680 
       79.86        84.66        25.71        18.84        22.29        25.25 
TCGA-CJ-5682 TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6030 TCGA-CJ-6033 TCGA-CW-5580 
       61.91        53.26        60.99        75.55         7.36        64.57 
TCGA-CW-5584 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6090 TCGA-CZ-4853 TCGA-CZ-4866 
        5.39        35.34        74.63        83.90        25.45        61.38 
TCGA-CZ-5456 TCGA-CZ-5457 TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5464 TCGA-CZ-5465 
       56.28        55.30        47.01        10.85        57.21        47.54 
TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5985 TCGA-CZ-5987 
       22.52         1.94        31.07        12.69        65.65        14.30 
TCGA-EU-5907 
        4.14 

$subtype2
TCGA-A3-3358 TCGA-A3-3370 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3385 TCGA-AK-3428 
       42.97        25.51        10.98        35.18        23.87        73.08 
TCGA-AK-3431 TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3450 TCGA-AK-3453 TCGA-AK-3454 
       60.92        72.07        57.34        58.49        45.90        28.70 
TCGA-AK-3458 TCGA-AK-3460 TCGA-AK-3461 TCGA-B0-4818 TCGA-B0-4823 TCGA-B0-4824 
       38.40        31.27        28.04        14.01        14.93        48.10 
TCGA-B0-4841 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5102 
        4.57        39.42        26.04         2.27        35.47        90.84 
TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5117 TCGA-B0-5119 
       90.44        35.90        11.80        26.20        17.59         1.94 
TCGA-B0-5120 TCGA-B0-5399 TCGA-B0-5690 TCGA-B0-5691 TCGA-B0-5693 TCGA-B0-5695 
       16.21        21.44        79.13       112.80       101.10        46.68 
TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5707 TCGA-B0-5710 TCGA-B0-5711 
       35.57        39.52       120.59        92.98        48.03        96.36 
TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-3924 TCGA-B2-4101 TCGA-B2-5639 TCGA-B2-A4SR 
       61.28        97.41        12.20         6.18        13.71        11.28 
TCGA-B4-5377 TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 
        9.57         1.25         4.64         0.36         0.23        16.80 
TCGA-B8-5159 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5552 
        7.89         0.26        17.16        16.60         6.38        12.89 
TCGA-B8-5553 TCGA-BP-4801 TCGA-BP-4993 TCGA-BP-5168 TCGA-BP-5173 TCGA-BP-5174 
       14.30        36.95         5.79        48.10         1.78        74.20 
TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5185 
       52.27         9.63        49.15        42.44        37.25        37.22 
TCGA-BP-5186 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5202 
       22.78        23.47        13.41        44.52        34.95         0.95 
TCGA-CJ-4897 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4908 TCGA-CJ-5681 
       59.44        51.25        58.92        49.15        50.30        18.12 
TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5585 
       62.10        73.32        83.77        92.02        81.83        85.78 
TCGA-CW-5589 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4864 
       78.15        75.98        79.89         0.59        58.75        93.04 
TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5459 TCGA-CZ-5463 
       63.42         0.82        23.74        18.44        55.30        21.76 
TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5988 TCGA-CZ-5989 TCGA-DV-5565 
        2.40        80.19        12.26        22.78        62.63        43.69 
TCGA-DV-5566 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5575 TCGA-EU-5904 TCGA-EU-5906 
       45.96        11.67        37.15        33.04        18.08         6.77 

$subtype3
TCGA-AK-3425 TCGA-B0-4690 TCGA-B0-4694 TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4699 
      109.91         1.41         3.48        18.97         1.38         3.58 
TCGA-B0-4700 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4842 
       65.06        49.02        35.54        27.88         6.02        53.79 
TCGA-B0-4945 TCGA-B0-5080 TCGA-B0-5083 TCGA-B0-5092 TCGA-B0-5095 TCGA-B0-5098 
       70.52         7.30        15.29        15.09         8.05        52.08 
TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5400 TCGA-B0-5692 TCGA-B0-5697 TCGA-B0-5702 
       29.95        19.27        37.22        48.89        60.33        52.73 
TCGA-B0-5709 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5636 TCGA-B2-5641 TCGA-B4-5378 
      102.44        11.77        10.36         8.71        10.65         5.75 
TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4621 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5164 
        0.23         0.53        14.17         0.72         0.13         0.76 
TCGA-B8-5550 TCGA-B8-5551 TCGA-BP-4177 TCGA-BP-4760 TCGA-BP-4770 TCGA-BP-4782 
       14.27         0.49        54.90        77.62        10.82        11.64 
TCGA-BP-4795 TCGA-BP-5170 TCGA-BP-5175 TCGA-BP-5182 TCGA-BP-5187 TCGA-BP-5191 
       20.38        79.27        30.64        38.30        13.35        31.76 
TCGA-BP-5195 TCGA-BP-5196 TCGA-CJ-4869 TCGA-CJ-4882 TCGA-CJ-4916 TCGA-CJ-4918 
       24.59        33.47        83.97        61.91        45.11         3.02 
TCGA-CJ-4923 TCGA-CJ-5672 TCGA-CJ-5686 TCGA-CJ-6028 TCGA-CJ-6031 TCGA-CW-5587 
       18.81        72.00        67.00        53.42        62.63        73.18 
TCGA-CW-5588 TCGA-CW-6087 TCGA-CW-6097 TCGA-CZ-4863 TCGA-CZ-4865 TCGA-CZ-5452 
       66.28         1.35        18.74        63.35         5.42        58.82 
TCGA-CZ-5458 TCGA-CZ-5462 TCGA-CZ-5984 TCGA-DV-5567 TCGA-DV-5568 TCGA-DV-5574 
       56.91        10.22        67.92        29.88        12.16        23.77 
TCGA-DV-5576 TCGA-EU-5905 
       23.90         3.88 

subtype1 subtype2 subtype3 
    0.10     0.23     0.13 
subtype1 subtype2 subtype3 
   90.08   120.59   109.91 
subtype1 subtype2 subtype3 
  28.830   35.520   23.835 
[1] "0.1 - 90.1 (28.8)"  "0.2 - 120.6 (35.5)" "0.1 - 109.9 (23.8)"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[259] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[283] "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[259] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[283] "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[103] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[157] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[193] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[253] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[259] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[283] "subtype3" "subtype2" "subtype1"
D4V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      19        9        39       30
  subtype2      76       16        12       10
  subtype3      35        3        22       14
D4V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 20 14 60  3
  subtype2 76 19 19  0
  subtype3 37  4 28  5
D4V4, multiclass
D4V5, binary
          cls
clus        0  1
  subtype1 41  5
  subtype2 51  1
  subtype3 35  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   41    5
  subtype2   51    1
  subtype3   35    3
   clus
vv  subtype1 subtype2 subtype3
  0       41       51       35
  1        5        1        3
D4V6, binary
          cls
clus         0   1
  subtype1  68  29
  subtype2 103  11
  subtype3  62  12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   68   29
  subtype2  103   11
  subtype3   62   12
    clus
vv   subtype1 subtype2 subtype3
  M0       68      103       62
  M1       29       11       12
D4V7, binary
          cls
clus        0  1
  subtype1 20 77
  subtype2 51 63
  subtype3 25 49
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20   77
  subtype2   51   63
  subtype3   25   49
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       20       51       25
  MALE         77       63       49
D4V8, continuous
D4V9, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype2"              
[4] "subtype3"              
clus
subtype1 subtype2 subtype3 
       1        1        2 
character(0)

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 74 27
  subtype2 55 35
  subtype3 63 23
  subtype4 52 24
  subtype5 36  8
  subtype6 18 39
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
     101       90       86       76       44       57 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      27       35       23       24        8       39 
$subtype1
TCGA-A3-3306 TCGA-A3-3320 TCGA-A3-3329 TCGA-A3-3352 TCGA-A3-3367 TCGA-A3-3380 
       36.82        49.58        23.21        18.44        34.65        18.64 
TCGA-A3-3383 TCGA-A3-3385 TCGA-AK-3434 TCGA-B0-4706 TCGA-B0-4811 TCGA-B0-4816 
       28.31        23.87        68.58         0.85        39.32        35.54 
TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4833 TCGA-B0-4841 TCGA-B0-4845 TCGA-B0-4846 
       14.01        48.10        78.41         4.57        65.26        39.42 
TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5085 TCGA-B0-5102 TCGA-B0-5110 TCGA-B0-5115 
        2.27        35.47        25.28        90.84        35.90        26.20 
TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5693 
        1.94        18.21        21.44        14.76        79.13       101.10 
TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5705 TCGA-B0-5711 
       15.42        46.68        84.92        90.08       120.59        96.36 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-4099 TCGA-B2-4101 TCGA-B4-5377 
       89.49        61.28        97.41        12.26         6.18         9.57 
TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4153 TCGA-BP-4158 TCGA-BP-4161 TCGA-BP-4164 
        0.36         0.23        25.02       111.02        90.28        32.61 
TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4335 TCGA-BP-4342 
       97.45         3.55        27.78        62.07        15.12        74.17 
TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4768 TCGA-BP-4774 TCGA-BP-4776 TCGA-BP-4961 
       72.59        77.98        13.15        61.94        13.48        63.62 
TCGA-BP-4975 TCGA-BP-4981 TCGA-BP-4991 TCGA-BP-4995 TCGA-BP-4999 TCGA-BP-5001 
       47.11        36.07        46.45        45.07        41.62        38.70 
TCGA-BP-5007 TCGA-BP-5168 TCGA-BP-5170 TCGA-BP-5176 TCGA-BP-5180 TCGA-BP-5181 
       37.48        48.10        79.27        52.27        74.40        49.15 
TCGA-BP-5192 TCGA-BP-5201 TCGA-CJ-4634 TCGA-CJ-4870 TCGA-CJ-4871 TCGA-CJ-4874 
       23.47        31.27        59.84        49.22        79.63        75.06 
TCGA-CJ-4878 TCGA-CJ-4897 TCGA-CJ-4904 TCGA-CJ-4916 TCGA-CJ-5675 TCGA-CJ-5676 
       71.87        59.44        58.92        45.11        79.86        84.66 
TCGA-CJ-5678 TCGA-CJ-5680 TCGA-CJ-5683 TCGA-CW-5583 TCGA-CW-5585 TCGA-CW-5587 
       18.84        25.25        62.10        81.83        85.78        73.18 
TCGA-CZ-4859 TCGA-CZ-5451 TCGA-CZ-5455 TCGA-CZ-5465 TCGA-CZ-5467 TCGA-CZ-5982 
       58.75        63.42        18.44        47.54         2.40        80.19 
TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5575 TCGA-EU-5906 
       12.26        62.63        43.69        33.04         6.77 

$subtype2
TCGA-A3-3308 TCGA-A3-3316 TCGA-A3-3349 TCGA-A3-3365 TCGA-A3-3376 TCGA-AK-3451 
        0.53        49.08        45.53        28.67        35.18        48.69 
TCGA-B0-4688 TCGA-B0-4697 TCGA-B0-4700 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4815 
        3.22        18.97        65.06         6.84         5.98        49.02 
TCGA-B0-4819 TCGA-B0-4823 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4843 TCGA-B0-5080 
        6.02        14.93        40.70        45.30        10.52         7.30 
TCGA-B0-5088 TCGA-B0-5095 TCGA-B0-5097 TCGA-B0-5100 TCGA-B0-5104 TCGA-B0-5106 
       14.24         8.05        21.86        62.89        90.44        52.50 
TCGA-B0-5108 TCGA-B0-5120 TCGA-B0-5706 TCGA-B0-5710 TCGA-B2-5636 TCGA-B4-5378 
       29.95        16.21        79.36        48.03         8.71         5.75 
TCGA-B4-5834 TCGA-B4-5836 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5545 TCGA-B8-5551 
        1.25         4.64         0.72         0.13        17.16         0.49 
TCGA-BP-4169 TCGA-BP-4337 TCGA-BP-4345 TCGA-BP-4349 TCGA-BP-4355 TCGA-BP-4762 
       23.05         0.07        49.84        12.23        31.33        44.15 
TCGA-BP-4765 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4784 TCGA-BP-4804 TCGA-BP-4960 
       71.80        61.68        10.82        60.95        47.97        71.41 
TCGA-BP-4962 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4974 TCGA-BP-4998 TCGA-BP-5010 
       58.68        14.20        48.89         7.23        30.61        28.83 
TCGA-BP-5177 TCGA-BP-5196 TCGA-BP-5199 TCGA-BP-5200 TCGA-CJ-4868 TCGA-CJ-4872 
        9.63        33.47        44.52        34.95        21.21        47.18 
TCGA-CJ-4882 TCGA-CJ-4886 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4892 TCGA-CJ-4894 
       61.91        64.14        63.95        68.55        49.97        27.65 
TCGA-CJ-4895 TCGA-CJ-4899 TCGA-CJ-4900 TCGA-CJ-4902 TCGA-CJ-4905 TCGA-CJ-4908 
       39.45        50.20        41.88        49.94        49.15        50.30 
TCGA-CJ-4918 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5682 TCGA-CJ-5684 TCGA-CJ-5686 
        3.02        18.81        63.85        61.91        73.32        67.00 
TCGA-CJ-5689 TCGA-CJ-6033 TCGA-CW-6088 TCGA-CW-6090 TCGA-CW-6097 TCGA-CZ-4856 
       53.26         7.36        75.98        83.90        18.74         0.59 
TCGA-CZ-4860 TCGA-CZ-5454 TCGA-CZ-5988 TCGA-DV-5567 TCGA-DV-5574 TCGA-EU-5904 
        6.74        23.74        22.78        29.88        23.77        18.08 

$subtype3
TCGA-A3-3311 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3335 TCGA-A3-3336 
       39.12        49.02        37.15        36.33        21.83        34.29 
TCGA-A3-3347 TCGA-A3-3351 TCGA-A3-3372 TCGA-A3-3387 TCGA-B0-4838 TCGA-B0-4839 
       52.93        29.92        24.16        20.25        27.42        53.85 
TCGA-B0-4847 TCGA-B0-4945 TCGA-B0-5075 TCGA-B0-5081 TCGA-B0-5691 TCGA-B0-5692 
       26.04        70.52        19.99         7.66       112.80        48.89 
TCGA-B0-5697 TCGA-B0-5701 TCGA-B0-5707 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 
       60.33        56.94        92.98         6.64        11.77        10.36 
TCGA-B2-5639 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4143 TCGA-B8-5159 
       13.71        10.65         0.23         0.53        23.31         7.89 
TCGA-B8-5164 TCGA-B8-5546 TCGA-B8-5550 TCGA-B8-5553 TCGA-BP-4343 TCGA-BP-4346 
        0.76        16.60        14.27        14.30        62.86        49.08 
TCGA-BP-4351 TCGA-BP-4756 TCGA-BP-4803 TCGA-BP-4963 TCGA-BP-4968 TCGA-BP-4973 
       31.86        12.30         6.67        60.30        57.37        45.50 
TCGA-BP-4977 TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5191 TCGA-BP-5195 TCGA-CJ-4635 
       14.93        27.02        33.21        31.76        24.59        46.55 
TCGA-CJ-4640 TCGA-CJ-4873 TCGA-CJ-4876 TCGA-CJ-4884 TCGA-CJ-4887 TCGA-CJ-4888 
       65.69        74.24        64.27        57.83        30.61        51.48 
TCGA-CJ-4893 TCGA-CJ-4903 TCGA-CJ-4907 TCGA-CJ-4912 TCGA-CJ-5672 TCGA-CJ-5677 
       24.62        51.25        49.25        54.44        72.00        25.71 
TCGA-CJ-6030 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5588 TCGA-CW-5590 
       75.55        64.57        92.02         5.39        66.28        35.34 
TCGA-CW-5591 TCGA-CZ-4853 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4866 
       74.63        25.45        60.59        63.35        93.04        61.38 
TCGA-CZ-5452 TCGA-CZ-5456 TCGA-CZ-5458 TCGA-CZ-5461 TCGA-CZ-5463 TCGA-CZ-5464 
       58.82        56.28        56.91        10.85        21.76        57.21 
TCGA-CZ-5466 TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-DV-5573 
       22.52        31.07        12.69        67.92        65.65        37.15 
TCGA-EU-5905 TCGA-EU-5907 
        3.88         4.14 

$subtype4
TCGA-A3-3313 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3326 TCGA-A3-3346 TCGA-A3-3357 
       24.16        48.56        38.99        37.38         4.50        46.85 
TCGA-A3-3362 TCGA-A3-3363 TCGA-A3-3373 TCGA-A3-3374 TCGA-A3-3378 TCGA-A3-3382 
       51.25        10.49        10.98        43.17        20.71        18.87 
TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3444 TCGA-AK-3456 TCGA-B0-4699 TCGA-B0-4714 
       84.36        73.08        48.36        37.55         3.58         0.10 
TCGA-B0-4817 TCGA-B0-4834 TCGA-B0-5077 TCGA-B0-5084 TCGA-B0-5096 TCGA-B0-5098 
       27.88        68.71        42.44         7.27         2.20        52.08 
TCGA-B0-5109 TCGA-B0-5117 TCGA-B0-5400 TCGA-B0-5700 TCGA-B0-5702 TCGA-B0-5703 
       19.27        17.59        37.22        35.57        52.73        39.52 
TCGA-B2-3923 TCGA-B2-3924 TCGA-B2-4098 TCGA-B8-4146 TCGA-B8-4620 TCGA-B8-4621 
       11.90        12.20         1.64        16.80         7.43        14.17 
TCGA-B8-5549 TCGA-BP-4165 TCGA-BP-4170 TCGA-BP-4174 TCGA-BP-4332 TCGA-BP-4334 
        6.38        99.85        77.03        61.78        37.25        21.21 
TCGA-BP-4338 TCGA-BP-4341 TCGA-BP-4353 TCGA-BP-4766 TCGA-BP-4777 TCGA-BP-4799 
       93.99        52.24        12.33        48.07        56.91        37.25 
TCGA-BP-4801 TCGA-BP-4959 TCGA-BP-4964 TCGA-BP-4967 TCGA-BP-4969 TCGA-BP-4972 
       36.95        87.45        61.22         6.71        58.98        49.35 
TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4993 TCGA-BP-4994 TCGA-BP-5004 TCGA-BP-5169 
       27.19         3.85         5.79        42.97        37.02         6.31 
TCGA-BP-5178 TCGA-BP-5185 TCGA-BP-5187 TCGA-BP-5194 TCGA-BP-5198 TCGA-CJ-4885 
       62.86        37.22        13.35        13.41        19.82        69.86 
TCGA-CJ-4901 TCGA-CJ-5681 TCGA-CJ-6028 TCGA-CJ-6031 TCGA-CZ-4861 TCGA-CZ-4865 
       47.67        18.12        53.42        62.63        14.63         5.42 
TCGA-CZ-5453 TCGA-CZ-5457 TCGA-CZ-5459 TCGA-CZ-5462 
        0.82        55.30        55.30        10.22 

$subtype5
TCGA-A3-3331 TCGA-A3-3370 TCGA-B0-4693 TCGA-B0-4710 TCGA-B0-5099 TCGA-B0-5113 
       48.82        25.51         2.53         3.12        15.95        11.80 
TCGA-B0-5116 TCGA-B8-5165 TCGA-B8-5552 TCGA-BP-4331 TCGA-BP-4344 TCGA-BP-4347 
       21.60         0.26        12.89        80.65        54.77        44.94 
TCGA-BP-4760 TCGA-BP-4763 TCGA-BP-4775 TCGA-BP-4781 TCGA-BP-4789 TCGA-BP-4790 
       77.62        41.75        60.56        68.38        48.95        36.53 
TCGA-BP-4797 TCGA-BP-4807 TCGA-BP-4965 TCGA-BP-4976 TCGA-BP-4982 TCGA-BP-4986 
       36.39         6.94        61.51        53.65        33.30        25.81 
TCGA-BP-4987 TCGA-BP-5006 TCGA-BP-5008 TCGA-BP-5009 TCGA-BP-5173 TCGA-BP-5174 
       36.95        27.62        35.21        36.23         1.78        74.20 
TCGA-BP-5182 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5202 TCGA-CJ-4642 
       38.30        42.44        37.25        22.78         0.95        53.49 
TCGA-CJ-6032 TCGA-CW-5589 TCGA-CW-6093 TCGA-CW-6096 TCGA-DV-5566 TCGA-DV-5568 
       83.77        78.15        79.89        69.93        45.96        12.16 
TCGA-DV-5569 TCGA-DV-5576 
       11.67        23.90 

$subtype6
TCGA-AK-3436 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4698 
       67.17         1.41         4.57         3.48        28.47         1.38 
TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 
       19.69        43.96         6.61        20.25         8.75         0.59 
TCGA-B0-4814 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4827 TCGA-B0-4828 TCGA-B0-4842 
        1.55        40.41        36.53        29.06        10.09        53.79 
TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5107 TCGA-B0-5696 
       10.29        29.00        15.09        10.95        30.48        56.78 
TCGA-B0-5709 TCGA-B4-5838 TCGA-B8-4622 TCGA-B8-5158 TCGA-BP-4173 TCGA-BP-4326 
      102.44         5.46         5.95         9.63        62.24        53.39 
TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4761 TCGA-BP-4771 TCGA-BP-4787 TCGA-BP-4798 
       11.31        33.99         5.98         5.29        15.75        10.98 
TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5175 TCGA-CJ-4638 
       46.42        31.27        16.44        18.51        30.64        14.17 
TCGA-CJ-4869 TCGA-CJ-4875 TCGA-CJ-4881 TCGA-CJ-4891 TCGA-CJ-4913 TCGA-CJ-4920 
       83.97        77.36        66.18        26.89        38.56         4.57 
TCGA-CJ-5679 TCGA-CJ-6027 TCGA-CW-6087 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 
       22.29        60.99         1.35        46.16        47.08        69.21 
TCGA-CZ-5460 TCGA-CZ-5468 TCGA-CZ-5987 
       47.01         1.94        14.30 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
    0.23     0.07     0.23     0.10     0.26     0.59 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  120.59    90.44   112.80    99.85    83.77   102.44 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  45.110   30.970   35.835   37.120   36.740   20.250 
[1] "0.2 - 120.6 (45.1)" "0.1 - 90.4 (31.0)"  "0.2 - 112.8 (35.8)"
[4] "0.1 - 99.8 (37.1)"  "0.3 - 83.8 (36.7)"  "0.6 - 102.4 (20.2)"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
  [7] "subtype3" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype1" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
 [25] "subtype2" "subtype1" "subtype5" "subtype3" "subtype4" "subtype4"
 [31] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [37] "subtype3" "subtype4" "subtype4" "subtype1" "subtype6" "subtype4"
 [43] "subtype2" "subtype4" "subtype2" "subtype6" "subtype6" "subtype5"
 [49] "subtype6" "subtype6" "subtype2" "subtype6" "subtype4" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
 [61] "subtype6" "subtype4" "subtype6" "subtype6" "subtype1" "subtype6"
 [67] "subtype6" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
 [73] "subtype6" "subtype6" "subtype2" "subtype1" "subtype6" "subtype6"
 [79] "subtype1" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype6" "subtype2" "subtype6" "subtype1" "subtype1"
 [91] "subtype3" "subtype6" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
[103] "subtype6" "subtype6" "subtype2" "subtype4" "subtype2" "subtype4"
[109] "subtype5" "subtype2" "subtype1" "subtype2" "subtype2" "subtype6"
[115] "subtype2" "subtype4" "subtype1" "subtype5" "subtype1" "subtype5"
[121] "subtype4" "subtype1" "subtype2" "subtype1" "subtype1" "subtype4"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype6" "subtype3" "subtype1" "subtype1" "subtype4"
[139] "subtype3" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
[145] "subtype6" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype6"
[169] "subtype1" "subtype1" "subtype3" "subtype4" "subtype1" "subtype4"
[175] "subtype4" "subtype6" "subtype6" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype5" "subtype2" "subtype3" "subtype4" "subtype3"
[187] "subtype2" "subtype5" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype4" "subtype2" "subtype4" "subtype6" "subtype4" "subtype1"
[199] "subtype6" "subtype1" "subtype1" "subtype1" "subtype5" "subtype4"
[205] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[211] "subtype3" "subtype5" "subtype2" "subtype3" "subtype5" "subtype2"
[217] "subtype3" "subtype6" "subtype4" "subtype6" "subtype2" "subtype3"
[223] "subtype1" "subtype1" "subtype5" "subtype6" "subtype2" "subtype5"
[229] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype6"
[235] "subtype1" "subtype5" "subtype1" "subtype4" "subtype5" "subtype2"
[241] "subtype6" "subtype5" "subtype5" "subtype5" "subtype6" "subtype4"
[247] "subtype4" "subtype3" "subtype2" "subtype5" "subtype4" "subtype2"
[253] "subtype1" "subtype2" "subtype3" "subtype4" "subtype5" "subtype4"
[259] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
[265] "subtype2" "subtype1" "subtype5" "subtype3" "subtype1" "subtype5"
[271] "subtype6" "subtype6" "subtype5" "subtype5" "subtype4" "subtype4"
[277] "subtype1" "subtype6" "subtype4" "subtype4" "subtype1" "subtype2"
[283] "subtype1" "subtype6" "subtype1" "subtype4" "subtype5" "subtype1"
[289] "subtype5" "subtype5" "subtype2" "subtype1" "subtype4" "subtype1"
[295] "subtype5" "subtype5" "subtype6" "subtype1" "subtype2" "subtype4"
[301] "subtype1" "subtype1" "subtype5" "subtype5" "subtype5" "subtype4"
[307] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype1"
[313] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype2"
[319] "subtype1" "subtype5" "subtype1" "subtype3" "subtype6" "subtype3"
[325] "subtype5" "subtype2" "subtype6" "subtype1" "subtype1" "subtype2"
[331] "subtype3" "subtype1" "subtype6" "subtype3" "subtype1" "subtype6"
[337] "subtype2" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[343] "subtype2" "subtype2" "subtype6" "subtype2" "subtype3" "subtype2"
[349] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype2"
[355] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[361] "subtype6" "subtype1" "subtype2" "subtype6" "subtype2" "subtype2"
[367] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype6"
[373] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[379] "subtype2" "subtype6" "subtype4" "subtype3" "subtype4" "subtype5"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[391] "subtype1" "subtype3" "subtype5" "subtype3" "subtype3" "subtype6"
[397] "subtype2" "subtype2" "subtype5" "subtype5" "subtype2" "subtype3"
[403] "subtype6" "subtype2" "subtype6" "subtype6" "subtype1" "subtype2"
[409] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[415] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype3"
[421] "subtype4" "subtype3" "subtype4" "subtype6" "subtype3" "subtype4"
[427] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype6"
[433] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[439] "subtype6" "subtype2" "subtype1" "subtype1" "subtype5" "subtype2"
[445] "subtype5" "subtype5" "subtype3" "subtype2" "subtype1" "subtype5"
[451] "subtype2" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
  [7] "subtype3" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype1" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
 [25] "subtype2" "subtype1" "subtype5" "subtype3" "subtype4" "subtype4"
 [31] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [37] "subtype3" "subtype4" "subtype4" "subtype1" "subtype6" "subtype4"
 [43] "subtype2" "subtype4" "subtype2" "subtype6" "subtype6" "subtype5"
 [49] "subtype6" "subtype6" "subtype2" "subtype6" "subtype4" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
 [61] "subtype6" "subtype4" "subtype6" "subtype6" "subtype1" "subtype6"
 [67] "subtype6" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
 [73] "subtype6" "subtype6" "subtype2" "subtype1" "subtype6" "subtype6"
 [79] "subtype1" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype6" "subtype2" "subtype6" "subtype1" "subtype1"
 [91] "subtype3" "subtype6" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
[103] "subtype6" "subtype6" "subtype2" "subtype4" "subtype2" "subtype4"
[109] "subtype5" "subtype2" "subtype1" "subtype2" "subtype2" "subtype6"
[115] "subtype2" "subtype4" "subtype1" "subtype5" "subtype1" "subtype5"
[121] "subtype4" "subtype1" "subtype2" "subtype1" "subtype1" "subtype4"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype6" "subtype3" "subtype1" "subtype1" "subtype4"
[139] "subtype3" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
[145] "subtype6" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype6"
[169] "subtype1" "subtype1" "subtype3" "subtype4" "subtype1" "subtype4"
[175] "subtype4" "subtype6" "subtype6" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype5" "subtype2" "subtype3" "subtype4" "subtype3"
[187] "subtype2" "subtype5" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype4" "subtype2" "subtype4" "subtype6" "subtype4" "subtype1"
[199] "subtype6" "subtype1" "subtype1" "subtype1" "subtype5" "subtype4"
[205] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[211] "subtype3" "subtype5" "subtype2" "subtype3" "subtype5" "subtype2"
[217] "subtype3" "subtype6" "subtype4" "subtype6" "subtype2" "subtype3"
[223] "subtype1" "subtype1" "subtype5" "subtype6" "subtype2" "subtype5"
[229] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype6"
[235] "subtype1" "subtype5" "subtype1" "subtype4" "subtype5" "subtype2"
[241] "subtype6" "subtype5" "subtype5" "subtype5" "subtype6" "subtype4"
[247] "subtype4" "subtype3" "subtype2" "subtype5" "subtype4" "subtype2"
[253] "subtype1" "subtype2" "subtype3" "subtype4" "subtype5" "subtype4"
[259] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
[265] "subtype2" "subtype1" "subtype5" "subtype3" "subtype1" "subtype5"
[271] "subtype6" "subtype6" "subtype5" "subtype5" "subtype4" "subtype4"
[277] "subtype1" "subtype6" "subtype4" "subtype4" "subtype1" "subtype2"
[283] "subtype1" "subtype6" "subtype1" "subtype4" "subtype5" "subtype1"
[289] "subtype5" "subtype5" "subtype2" "subtype1" "subtype4" "subtype1"
[295] "subtype5" "subtype5" "subtype6" "subtype1" "subtype2" "subtype4"
[301] "subtype1" "subtype1" "subtype5" "subtype5" "subtype5" "subtype4"
[307] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype1"
[313] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype2"
[319] "subtype1" "subtype5" "subtype1" "subtype3" "subtype6" "subtype3"
[325] "subtype5" "subtype2" "subtype6" "subtype1" "subtype1" "subtype2"
[331] "subtype3" "subtype1" "subtype6" "subtype3" "subtype1" "subtype6"
[337] "subtype2" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[343] "subtype2" "subtype2" "subtype6" "subtype2" "subtype3" "subtype2"
[349] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype2"
[355] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[361] "subtype6" "subtype1" "subtype2" "subtype6" "subtype2" "subtype2"
[367] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype6"
[373] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[379] "subtype2" "subtype6" "subtype4" "subtype3" "subtype4" "subtype5"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[391] "subtype1" "subtype3" "subtype5" "subtype3" "subtype3" "subtype6"
[397] "subtype2" "subtype2" "subtype5" "subtype5" "subtype2" "subtype3"
[403] "subtype6" "subtype2" "subtype6" "subtype6" "subtype1" "subtype2"
[409] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[415] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype3"
[421] "subtype4" "subtype3" "subtype4" "subtype6" "subtype3" "subtype4"
[427] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype6"
[433] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[439] "subtype6" "subtype2" "subtype1" "subtype1" "subtype5" "subtype2"
[445] "subtype5" "subtype5" "subtype3" "subtype2" "subtype1" "subtype5"
[451] "subtype2" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype3"
  [7] "subtype3" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype1" "subtype5" "subtype3" "subtype3" "subtype4" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype4"
 [25] "subtype2" "subtype1" "subtype5" "subtype3" "subtype4" "subtype4"
 [31] "subtype2" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [37] "subtype3" "subtype4" "subtype4" "subtype1" "subtype6" "subtype4"
 [43] "subtype2" "subtype4" "subtype2" "subtype6" "subtype6" "subtype5"
 [49] "subtype6" "subtype6" "subtype2" "subtype6" "subtype4" "subtype2"
 [55] "subtype2" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
 [61] "subtype6" "subtype4" "subtype6" "subtype6" "subtype1" "subtype6"
 [67] "subtype6" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
 [73] "subtype6" "subtype6" "subtype2" "subtype1" "subtype6" "subtype6"
 [79] "subtype1" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
 [85] "subtype1" "subtype6" "subtype2" "subtype6" "subtype1" "subtype1"
 [91] "subtype3" "subtype6" "subtype1" "subtype1" "subtype3" "subtype3"
 [97] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
[103] "subtype6" "subtype6" "subtype2" "subtype4" "subtype2" "subtype4"
[109] "subtype5" "subtype2" "subtype1" "subtype2" "subtype2" "subtype6"
[115] "subtype2" "subtype4" "subtype1" "subtype5" "subtype1" "subtype5"
[121] "subtype4" "subtype1" "subtype2" "subtype1" "subtype1" "subtype4"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype6" "subtype3" "subtype1" "subtype1" "subtype4"
[139] "subtype3" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
[145] "subtype6" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[151] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
[157] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype6"
[169] "subtype1" "subtype1" "subtype3" "subtype4" "subtype1" "subtype4"
[175] "subtype4" "subtype6" "subtype6" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype5" "subtype2" "subtype3" "subtype4" "subtype3"
[187] "subtype2" "subtype5" "subtype3" "subtype1" "subtype1" "subtype1"
[193] "subtype4" "subtype2" "subtype4" "subtype6" "subtype4" "subtype1"
[199] "subtype6" "subtype1" "subtype1" "subtype1" "subtype5" "subtype4"
[205] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype1"
[211] "subtype3" "subtype5" "subtype2" "subtype3" "subtype5" "subtype2"
[217] "subtype3" "subtype6" "subtype4" "subtype6" "subtype2" "subtype3"
[223] "subtype1" "subtype1" "subtype5" "subtype6" "subtype2" "subtype5"
[229] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype6"
[235] "subtype1" "subtype5" "subtype1" "subtype4" "subtype5" "subtype2"
[241] "subtype6" "subtype5" "subtype5" "subtype5" "subtype6" "subtype4"
[247] "subtype4" "subtype3" "subtype2" "subtype5" "subtype4" "subtype2"
[253] "subtype1" "subtype2" "subtype3" "subtype4" "subtype5" "subtype4"
[259] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
[265] "subtype2" "subtype1" "subtype5" "subtype3" "subtype1" "subtype5"
[271] "subtype6" "subtype6" "subtype5" "subtype5" "subtype4" "subtype4"
[277] "subtype1" "subtype6" "subtype4" "subtype4" "subtype1" "subtype2"
[283] "subtype1" "subtype6" "subtype1" "subtype4" "subtype5" "subtype1"
[289] "subtype5" "subtype5" "subtype2" "subtype1" "subtype4" "subtype1"
[295] "subtype5" "subtype5" "subtype6" "subtype1" "subtype2" "subtype4"
[301] "subtype1" "subtype1" "subtype5" "subtype5" "subtype5" "subtype4"
[307] "subtype5" "subtype4" "subtype3" "subtype3" "subtype3" "subtype1"
[313] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype2"
[319] "subtype1" "subtype5" "subtype1" "subtype3" "subtype6" "subtype3"
[325] "subtype5" "subtype2" "subtype6" "subtype1" "subtype1" "subtype2"
[331] "subtype3" "subtype1" "subtype6" "subtype3" "subtype1" "subtype6"
[337] "subtype2" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[343] "subtype2" "subtype2" "subtype6" "subtype2" "subtype3" "subtype2"
[349] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype2"
[355] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[361] "subtype6" "subtype1" "subtype2" "subtype6" "subtype2" "subtype2"
[367] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype6"
[373] "subtype1" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
[379] "subtype2" "subtype6" "subtype4" "subtype3" "subtype4" "subtype5"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[391] "subtype1" "subtype3" "subtype5" "subtype3" "subtype3" "subtype6"
[397] "subtype2" "subtype2" "subtype5" "subtype5" "subtype2" "subtype3"
[403] "subtype6" "subtype2" "subtype6" "subtype6" "subtype1" "subtype2"
[409] "subtype4" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[415] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype3"
[421] "subtype4" "subtype3" "subtype4" "subtype6" "subtype3" "subtype4"
[427] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype6"
[433] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[439] "subtype6" "subtype2" "subtype1" "subtype1" "subtype5" "subtype2"
[445] "subtype5" "subtype5" "subtype3" "subtype2" "subtype1" "subtype5"
[451] "subtype2" "subtype3" "subtype1" "subtype3"
D5V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      54       11        22       14
  subtype2      42        9        19       20
  subtype3      39       12        24       11
  subtype4      44        7        17        8
  subtype5      33        2         9        0
  subtype6       7        3        24       23
D5V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 54 15 31  1
  subtype2 43 10 32  5
  subtype3 41 12 33  0
  subtype4 45  7 23  1
  subtype5 33  2  9  0
  subtype6  8  8 37  4
D5V4, multiclass
D5V5, binary
          cls
clus        0  1
  subtype1 48  1
  subtype2 46  2
  subtype3 43  2
  subtype4 35  3
  subtype5 13  0
  subtype6 23  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   48    1
  subtype2   46    2
  subtype3   43    2
  subtype4   35    3
  subtype5   13    0
  subtype6   23    8
D5V6, binary
          cls
clus        0  1
  subtype1 87 14
  subtype2 71 19
  subtype3 75 11
  subtype4 68  8
  subtype5 44  0
  subtype6 34 23
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   87   14
  subtype2   71   19
  subtype3   75   11
  subtype4   68    8
  subtype5   44    0
  subtype6   34   23
D5V7, binary
          cls
clus        0  1
  subtype1 44 57
  subtype2 29 61
  subtype3 27 59
  subtype4 18 58
  subtype5 18 26
  subtype6 15 42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   44   57
  subtype2   29   61
  subtype3   27   59
  subtype4   18   58
  subtype5   18   26
  subtype6   15   42
D5V8, continuous
[1] "Remove cluster labels:" "subtype4"              
clus
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
       7        8       10        2        4        3 
 [1] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype6" "subtype1" "subtype1" "subtype6"
[13] "subtype2" "subtype6" "subtype2" "subtype3" "subtype3" "subtype1"
[19] "subtype3" "subtype1" "subtype1" "subtype5" "subtype2" "subtype5"
[25] "subtype5" "subtype3" "subtype2" "subtype1" "subtype5" "subtype2"
[31] "subtype3" "subtype3"
D5V9, continuous
[1] "Remove cluster labels:" "subtype3"               "subtype4"              
[4] "subtype6"              
clus
subtype3 subtype4 subtype6 
       1        1        1 
character(0)

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2        0   1
  subtype1 146  43
  subtype2 102  51
  subtype3  50  62
subtype1 subtype2 subtype3 
     189      153      112 
subtype1 subtype2 subtype3 
      43       51       62 
$subtype1
TCGA-A3-3308 TCGA-A3-3316 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3329 
        0.53        49.08        49.58        48.56        38.99        23.21 
TCGA-A3-3331 TCGA-A3-3349 TCGA-A3-3357 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3370 
       48.82        45.53        46.85        51.25        28.67        25.51 
TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3380 TCGA-A3-3382 TCGA-AK-3444 TCGA-AK-3451 
       10.98        35.18        18.64        18.87        48.36        48.69 
TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4710 TCGA-B0-4819 
       18.97         1.38         6.84         5.98         3.12         6.02 
TCGA-B0-4823 TCGA-B0-4837 TCGA-B0-4843 TCGA-B0-5080 TCGA-B0-5088 TCGA-B0-5095 
       14.93        45.30        10.52         7.30        14.24         8.05 
TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5106 TCGA-B0-5108 
        2.20        21.86        15.95        62.89        52.50        29.95 
TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5120 TCGA-B0-5693 TCGA-B0-5702 
       35.90        11.80        26.20        16.21       101.10        52.73 
TCGA-B0-5706 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B2-3924 TCGA-B2-4098 
       79.36        48.03        96.36        89.49        12.20         1.64 
TCGA-B2-4099 TCGA-B2-5633 TCGA-B2-5636 TCGA-B4-5378 TCGA-B4-5834 TCGA-B8-4146 
       12.26        11.77         8.71         5.75         1.25        16.80 
TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5549 TCGA-B8-5552 
        0.72         0.13         0.26        17.16         6.38        12.89 
TCGA-B8-5553 TCGA-BP-4165 TCGA-BP-4169 TCGA-BP-4170 TCGA-BP-4174 TCGA-BP-4326 
       14.30        99.85        23.05        77.03        61.78        53.39 
TCGA-BP-4331 TCGA-BP-4332 TCGA-BP-4341 TCGA-BP-4342 TCGA-BP-4344 TCGA-BP-4349 
       80.65        37.25        52.24        74.17        54.77        12.23 
TCGA-BP-4353 TCGA-BP-4355 TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4760 TCGA-BP-4762 
       12.33        31.33        72.59        77.98        77.62        44.15 
TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4769 TCGA-BP-4774 TCGA-BP-4775 TCGA-BP-4777 
       41.75        71.80        61.68        61.94        60.56        56.91 
TCGA-BP-4781 TCGA-BP-4784 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4797 TCGA-BP-4799 
       68.38        60.95        48.95        36.53        36.39        37.25 
TCGA-BP-4801 TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4959 TCGA-BP-4961 
       36.95         6.67        47.97         6.94        87.45        63.62 
TCGA-BP-4962 TCGA-BP-4964 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4972 TCGA-BP-4974 
       58.68        61.22        14.20        48.89        49.35         7.23 
TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4982 TCGA-BP-4986 TCGA-BP-4987 TCGA-BP-4991 
       47.11        53.65        33.30        25.81        36.95        46.45 
TCGA-BP-4993 TCGA-BP-4995 TCGA-BP-4998 TCGA-BP-4999 TCGA-BP-5006 TCGA-BP-5007 
        5.79        45.07        30.61        41.62        27.62        37.48 
TCGA-BP-5008 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5168 TCGA-BP-5177 TCGA-BP-5181 
       35.21        36.23        28.83        48.10         9.63        49.15 
TCGA-BP-5182 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5187 TCGA-BP-5192 TCGA-BP-5194 
       38.30        37.25        22.78        13.35        23.47        13.41 
TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5202 TCGA-CJ-4634 
       33.47        19.82        44.52        34.95         0.95        59.84 
TCGA-CJ-4642 TCGA-CJ-4868 TCGA-CJ-4870 TCGA-CJ-4871 TCGA-CJ-4872 TCGA-CJ-4878 
       53.49        21.21        49.22        79.63        47.18        71.87 
TCGA-CJ-4886 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4899 
       64.14        63.95        68.55        24.62        27.65        50.20 
TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 
       41.88        47.67        49.94        51.25        58.92        49.15 
TCGA-CJ-4908 TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 
       50.30         3.02         4.57        18.81        63.85        84.66 
TCGA-CJ-5682 TCGA-CJ-5684 TCGA-CJ-6032 TCGA-CW-5583 TCGA-CW-5588 TCGA-CW-5589 
       61.91        73.32        83.77        81.83        66.28        78.15 
TCGA-CW-5590 TCGA-CW-6088 TCGA-CW-6090 TCGA-CW-6093 TCGA-CZ-4856 TCGA-CZ-4859 
       35.34        75.98        83.90        79.89         0.59        58.75 
TCGA-CZ-4865 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5457 TCGA-CZ-5459 TCGA-CZ-5461 
        5.42         0.82        23.74        55.30        55.30        10.85 
TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5982 TCGA-CZ-5988 TCGA-DV-5566 TCGA-DV-5567 
       21.76        47.54        80.19        22.78        45.96        29.88 
TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5575 TCGA-DV-5576 
       12.16        11.67        37.15        23.77        33.04        23.90 
TCGA-EU-5904 TCGA-EU-5905 TCGA-EU-5907 
       18.08         3.88         4.14 

$subtype2
TCGA-A3-3306 TCGA-A3-3311 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3326 
       36.82        39.12        49.02        37.15        36.33        37.38 
TCGA-A3-3336 TCGA-A3-3347 TCGA-A3-3351 TCGA-A3-3352 TCGA-A3-3367 TCGA-A3-3372 
       34.29        52.93        29.92        18.44        34.65        24.16 
TCGA-A3-3383 TCGA-A3-3385 TCGA-A3-3387 TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4712 
       28.31        23.87        20.25         4.57         2.53        43.96 
TCGA-B0-4811 TCGA-B0-4816 TCGA-B0-4818 TCGA-B0-4822 TCGA-B0-4824 TCGA-B0-4836 
       39.32        35.54        14.01        36.53        48.10        40.70 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 
       27.42        53.85        65.26        39.42        26.04         2.27 
TCGA-B0-4852 TCGA-B0-5075 TCGA-B0-5077 TCGA-B0-5081 TCGA-B0-5085 TCGA-B0-5092 
       35.47        19.99        42.44         7.66        25.28        15.09 
TCGA-B0-5104 TCGA-B0-5116 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 
       90.44        21.60        21.44        14.76        79.13        48.89 
TCGA-B0-5694 TCGA-B0-5697 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5701 TCGA-B0-5705 
       15.42        60.33        84.92        90.08        56.94       120.59 
TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5635 TCGA-B2-5639 
       61.28        97.41         6.18         6.64        10.36        13.71 
TCGA-B2-5641 TCGA-B4-5377 TCGA-B4-5832 TCGA-B4-5835 TCGA-B4-5843 TCGA-B8-4143 
       10.65         9.57         0.23         0.53         0.36        23.31 
TCGA-B8-4153 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5546 TCGA-B8-5550 TCGA-B8-5551 
       25.02         7.89         0.76        16.60        14.27         0.49 
TCGA-BP-4158 TCGA-BP-4161 TCGA-BP-4164 TCGA-BP-4173 TCGA-BP-4325 TCGA-BP-4330 
      111.02        90.28        32.61        62.24        97.45        62.07 
TCGA-BP-4343 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4351 TCGA-BP-4768 TCGA-BP-4776 
       62.86        49.08        44.94        31.86        13.15        13.48 
TCGA-BP-4963 TCGA-BP-4965 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4973 TCGA-BP-4977 
       60.30        61.51         6.71        57.37        45.50        14.93 
TCGA-BP-4981 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5001 
       36.07        46.42        31.27        16.44        18.51        38.70 
TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5183 TCGA-BP-5185 TCGA-BP-5189 
        1.78        74.20        52.27        42.44        37.22        27.02 
TCGA-BP-5190 TCGA-BP-5191 TCGA-BP-5195 TCGA-BP-5201 TCGA-CJ-4635 TCGA-CJ-4640 
       33.21        31.76        24.59        31.27        46.55        65.69 
TCGA-CJ-4869 TCGA-CJ-4873 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4881 
       83.97        74.24        75.06        77.36        64.27        66.18 
TCGA-CJ-4884 TCGA-CJ-4887 TCGA-CJ-4895 TCGA-CJ-4897 TCGA-CJ-4907 TCGA-CJ-4912 
       57.83        30.61        39.45        59.44        49.25        54.44 
TCGA-CJ-4916 TCGA-CJ-5672 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5683 
       45.11        72.00        25.71        18.84        22.29        62.10 
TCGA-CJ-5686 TCGA-CJ-6027 TCGA-CJ-6030 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5584 
       67.00        60.99        75.55        64.57        92.02         5.39 
TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5591 TCGA-CW-6087 TCGA-CW-6096 TCGA-CW-6097 
       85.78        73.18        74.63         1.35        69.93        18.74 
TCGA-CZ-4853 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4866 TCGA-CZ-5451 
       25.45        60.59        63.35        93.04        61.38        63.42 
TCGA-CZ-5452 TCGA-CZ-5455 TCGA-CZ-5456 TCGA-CZ-5458 TCGA-CZ-5464 TCGA-CZ-5466 
       58.82        18.44        56.28        56.91        57.21        22.52 
TCGA-CZ-5467 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5986 
        2.40         1.94        31.07        67.92        65.65        12.26 
TCGA-CZ-5989 TCGA-DV-5565 TCGA-EU-5906 
       62.63        43.69         6.77 

$subtype3
TCGA-A3-3313 TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3378 
       24.16        21.83         4.50        10.49        43.17        20.71 
TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3434 TCGA-AK-3436 TCGA-AK-3456 TCGA-B0-4688 
       84.36        73.08        68.58        67.17        37.55         3.22 
TCGA-B0-4690 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4699 TCGA-B0-4700 TCGA-B0-4706 
        1.41         3.48        28.47         3.58        65.06         0.85 
TCGA-B0-4707 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 
       19.69         6.61         0.10        20.25         8.75         0.59 
TCGA-B0-4814 TCGA-B0-4815 TCGA-B0-4817 TCGA-B0-4821 TCGA-B0-4827 TCGA-B0-4828 
        1.55        49.02        27.88        40.41        29.06        10.09 
TCGA-B0-4833 TCGA-B0-4834 TCGA-B0-4841 TCGA-B0-4842 TCGA-B0-4844 TCGA-B0-4848 
       78.41        68.71         4.57        53.79        10.29        29.00 
TCGA-B0-4945 TCGA-B0-5084 TCGA-B0-5094 TCGA-B0-5098 TCGA-B0-5102 TCGA-B0-5107 
       70.52         7.27        10.95        52.08        90.84        30.48 
TCGA-B0-5109 TCGA-B0-5117 TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5400 TCGA-B0-5691 
       19.27        17.59         1.94        18.21        37.22       112.80 
TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5707 TCGA-B0-5709 
       46.68        56.78        35.57        39.52        92.98       102.44 
TCGA-B2-3923 TCGA-B4-5836 TCGA-B4-5838 TCGA-B4-5844 TCGA-B8-4620 TCGA-B8-4621 
       11.90         4.64         5.46         0.23         7.43        14.17 
TCGA-B8-4622 TCGA-B8-5158 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4334 TCGA-BP-4335 
        5.95         9.63         3.55        27.78        21.21        15.12 
TCGA-BP-4337 TCGA-BP-4338 TCGA-BP-4345 TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4756 
        0.07        93.99        49.84        11.31        33.99        12.30 
TCGA-BP-4761 TCGA-BP-4766 TCGA-BP-4770 TCGA-BP-4771 TCGA-BP-4787 TCGA-BP-4798 
        5.98        48.07        10.82         5.29        15.75        10.98 
TCGA-BP-4960 TCGA-BP-4969 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4994 TCGA-BP-5004 
       71.41        58.98        27.19         3.85        42.97        37.02 
TCGA-BP-5169 TCGA-BP-5170 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-CJ-4638 
        6.31        79.27        30.64        62.86        74.40        14.17 
TCGA-CJ-4882 TCGA-CJ-4885 TCGA-CJ-4888 TCGA-CJ-4891 TCGA-CJ-4892 TCGA-CJ-4913 
       61.91        69.86        51.48        26.89        49.97        38.56 
TCGA-CJ-5675 TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5689 TCGA-CJ-6028 TCGA-CJ-6031 
       79.86        25.25        18.12        53.26        53.42        62.63 
TCGA-CJ-6033 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-4861 
        7.36        46.16        47.08        69.21         6.74        14.63 
TCGA-CZ-5460 TCGA-CZ-5462 TCGA-CZ-5470 TCGA-CZ-5987 
       47.01        10.22        12.69        14.30 

subtype1 subtype2 subtype3 
    0.13     0.23     0.07 
subtype1 subtype2 subtype3 
  101.10   120.59   112.80 
subtype1 subtype2 subtype3 
   37.15    37.38    26.07 
[1] "0.1 - 101.1 (37.1)" "0.2 - 120.6 (37.4)" "0.1 - 112.8 (26.1)"
  [1] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[235] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[253] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[259] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[283] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[301] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[313] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[325] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[331] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[337] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[343] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[349] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[361] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[379] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[385] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[391] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[409] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[415] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[421] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[439] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[451] "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[235] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[253] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[259] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[283] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[301] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[313] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[325] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[331] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[337] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[343] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[349] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[361] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[379] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[385] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[391] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[409] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[415] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[421] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[439] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[451] "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
  [7] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [55] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[151] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[181] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[235] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[247] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[253] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[259] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[283] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[301] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[313] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[325] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[331] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[337] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[343] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[349] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[361] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[379] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[385] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[391] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[409] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[415] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[421] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[439] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[451] "subtype1" "subtype1" "subtype2" "subtype1"
D6V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1     118       16        36       19
  subtype2      65       17        47       24
  subtype3      36       11        32       33
D6V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1 120  19  48   2
  subtype2  67  20  65   1
  subtype3  37  15  52   8
D6V4, multiclass
D6V5, binary
          cls
clus        0  1
  subtype1 72  4
  subtype2 76  4
  subtype3 60  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   72    4
  subtype2   76    4
  subtype3   60    8
   clus
vv  subtype1 subtype2 subtype3
  0       72       76       60
  1        4        4        8
D6V6, binary
          cls
clus         0   1
  subtype1 170  19
  subtype2 130  23
  subtype3  79  33
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  170   19
  subtype2  130   23
  subtype3   79   33
    clus
vv   subtype1 subtype2 subtype3
  M0      170      130       79
  M1       19       23       33
D6V7, binary
          cls
clus         0   1
  subtype1  68 121
  subtype2  47 106
  subtype3  36  76
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   68  121
  subtype2   47  106
  subtype3   36   76
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       68       47       36
  MALE        121      106       76
D6V8, continuous
D6V9, continuous
[1] "Remove cluster labels:" "subtype2"               "subtype3"              
clus
subtype2 subtype3 
       1        2 
character(0)

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1 155  44
  subtype2  94  86
  subtype3  71  30
subtype1 subtype2 subtype3 
     199      180      101 
subtype1 subtype2 subtype3 
      44       86       30 
$subtype1
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.56        38.99        24.69 
TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3351 TCGA-A3-3352 
       37.38        23.21        48.82        31.04        29.92        18.44 
TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3373 
       42.97        42.28        34.65        25.51        24.16        10.98 
TCGA-A3-3380 TCGA-A3-3385 TCGA-AK-3429 TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 
       18.64        23.87        66.31        68.58        48.36        58.49 
TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3458 TCGA-AK-3460 TCGA-B0-4693 TCGA-B0-4701 
       28.70        22.45        38.40        31.27         2.53         6.84 
TCGA-B0-4714 TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 
        0.10         1.55        14.01        48.10        10.09        78.41 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 
       27.42        53.85        65.26        39.42        26.04         2.27 
TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5077 TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5099 
       35.47        70.52        42.44        25.28        14.24        15.95 
TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5119 
       90.84        90.44        35.90        11.80        26.20         1.94 
TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 
       18.21        21.44        14.76        79.13        48.89       101.10 
TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5703 
       46.68        56.78        84.92        90.08        35.57        39.52 
TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 
      120.59        48.03        96.36        89.49        61.28        12.20 
TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5635 TCGA-B2-5639 TCGA-B4-5377 
       12.26         6.18         6.64        10.36        13.71         9.57 
TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 
        1.25         4.64         0.36         0.23        16.80        27.16 
TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 TCGA-B8-5164 
       27.52        25.02        24.62         5.95         7.89         0.76 
TCGA-B8-5549 TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4160 TCGA-BP-4162 TCGA-BP-4164 
        6.38        14.30       111.02        94.72       101.06        32.61 
TCGA-BP-4165 TCGA-BP-4170 TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4330 TCGA-BP-4335 
       99.85        77.03        97.45         3.55        62.07        15.12 
TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4756 
       18.48        52.24        49.08        44.94        12.23        12.30 
TCGA-BP-4758 TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4774 TCGA-BP-4775 
       72.59        71.80        48.07        13.15        61.94        60.56 
TCGA-BP-4777 TCGA-BP-4782 TCGA-BP-4807 TCGA-BP-4961 TCGA-BP-4964 TCGA-BP-4965 
       56.91        11.64         6.94        63.62        61.22        61.51 
TCGA-BP-4968 TCGA-BP-4969 TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 
       57.37        58.98        45.50         7.23        47.11        53.65 
TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4993 TCGA-BP-4999 
       36.07        33.30        36.95        46.45         5.79        41.62 
TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 TCGA-BP-5168 TCGA-BP-5173 
       38.70        37.02        27.62        37.48        48.10         1.78 
TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5186 
       74.20        52.27        49.15        42.44        37.25        22.78 
TCGA-BP-5190 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5200 TCGA-BP-5201 TCGA-BP-5202 
       33.21        23.47        13.41        34.95        31.27         0.95 
TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 TCGA-CJ-4874 TCGA-CJ-4875 
       59.84        75.88        58.92        11.05        75.06        77.36 
TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 
       64.27        71.87        69.86        64.14        30.61        49.97 
TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4908 
       24.62        27.65        59.44        51.25        58.92        50.30 
TCGA-CJ-4916 TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5684 TCGA-CJ-6032 TCGA-CW-5580 
       45.11        72.00        79.86        73.32        83.77        64.57 
TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-6088 TCGA-CW-6093 
       92.02         5.39        85.78        73.18        75.98        79.89 
TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-5453 
       25.45         0.59        58.75        63.35        93.04         0.82 
TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5460 TCGA-CZ-5463 TCGA-CZ-5465 
       18.44        55.30        56.91        47.01        21.76        47.54 
TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5566 TCGA-DV-5575 TCGA-EU-5904 
       80.19        12.26        62.63        45.96        33.04        18.08 
TCGA-EU-5906 
        6.77 

$subtype2
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3335 
        0.53        39.12        49.08        37.15        36.33        21.83 
TCGA-A3-3347 TCGA-A3-3357 TCGA-A3-3378 TCGA-A3-3382 TCGA-A3-3387 TCGA-AK-3426 
       52.93        46.85        20.71        18.87        20.25        29.06 
TCGA-AK-3436 TCGA-AK-3445 TCGA-AK-3451 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 
       67.17        42.05        48.69         1.41         4.57         3.48 
TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4700 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 
       18.97         1.38        65.06        19.69        43.96         6.61 
TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 
       20.25         8.75         0.59        49.02        35.54        27.88 
TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4842 
        6.02        40.41        29.06        40.70        45.30        53.79 
TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5081 TCGA-B0-5084 
       10.52        10.29        29.00        19.99         7.66         7.27 
TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 
       15.09        10.95         8.05         2.20        21.86        52.08 
TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5116 TCGA-B0-5400 TCGA-B0-5694 
       52.50        30.48        29.95        21.60        37.22        15.42 
TCGA-B0-5701 TCGA-B0-5706 TCGA-B2-4098 TCGA-B2-5633 TCGA-B2-5641 TCGA-B4-5832 
       56.94        79.36         1.64        11.77        10.65         0.23 
TCGA-B4-5835 TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-5158 TCGA-B8-5162 
        0.53        23.31         7.43        14.17         9.63         0.72 
TCGA-B8-5163 TCGA-B8-5550 TCGA-B8-5551 TCGA-BP-4161 TCGA-BP-4167 TCGA-BP-4173 
        0.13        14.27         0.49        90.28        89.36        62.24 
TCGA-BP-4174 TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4343 
       61.78        64.27        53.39        93.99        74.17        62.86 
TCGA-BP-4351 TCGA-BP-4352 TCGA-BP-4353 TCGA-BP-4354 TCGA-BP-4761 TCGA-BP-4771 
       31.86        11.31        12.33        33.99         5.98         5.29 
TCGA-BP-4781 TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4803 
       68.38        15.75        36.39        10.98        37.25         6.67 
TCGA-BP-4804 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4967 
       47.97        87.45        71.41        58.68        60.30         6.71 
TCGA-BP-4971 TCGA-BP-4977 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 
       48.89        14.93        46.42        31.27        25.81        27.19 
TCGA-BP-4989 TCGA-BP-4992 TCGA-BP-5000 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5169 
        3.85        16.44        18.51        36.23        28.83         6.31 
TCGA-BP-5170 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5189 TCGA-BP-5191 
       79.27        30.64        62.86        74.40        27.02        31.76 
TCGA-BP-5195 TCGA-BP-5196 TCGA-BP-5198 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 
       24.59        33.47        19.82        46.55        63.25        73.22 
TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4871 
       14.17        65.69        54.61        21.21        83.97        79.63 
TCGA-CJ-4872 TCGA-CJ-4873 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4888 
       47.18        74.24        66.18        61.91        57.83        51.48 
TCGA-CJ-4890 TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 
       68.55        26.89        39.45        41.88        47.67        49.94 
TCGA-CJ-4912 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5677 
       54.44         4.57        18.81        63.85        84.66        25.71 
TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5686 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 
       18.84        22.29        67.00        60.99        53.42        75.55 
TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5588 TCGA-CW-5590 TCGA-CW-6087 TCGA-CW-6090 
       62.63         7.36        66.28        35.34         1.35        83.90 
TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-4861 
       18.74        46.16        47.08        69.21         6.74        14.63 
TCGA-CZ-4862 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5452 TCGA-CZ-5454 TCGA-CZ-5456 
       60.59         5.42        61.38        58.82        23.74        56.28 
TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5470 
       10.85        10.22        57.21         1.94        31.07        12.69 
TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 TCGA-CZ-5988 TCGA-DV-5568 TCGA-EU-5905 
       67.92        65.65        14.30        22.78        12.16         3.88 

$subtype3
TCGA-A3-3313 TCGA-A3-3317 TCGA-A3-3328 TCGA-A3-3349 TCGA-A3-3362 TCGA-A3-3363 
       24.16        49.02        25.81        45.53        51.25        10.49 
TCGA-A3-3365 TCGA-A3-3374 TCGA-A3-3376 TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3431 
       28.67        43.17        35.18        84.36        73.08        60.92 
TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3461 
       72.07        57.34        46.78        45.90        37.55        28.04 
TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4688 TCGA-B0-4696 TCGA-B0-4699 TCGA-B0-4703 
       12.13         1.32         3.22        28.47         3.58         5.98 
TCGA-B0-4706 TCGA-B0-4811 TCGA-B0-4823 TCGA-B0-4834 TCGA-B0-4841 TCGA-B0-5080 
        0.85        39.32        14.93        68.71         4.57         7.30 
TCGA-B0-5083 TCGA-B0-5100 TCGA-B0-5109 TCGA-B0-5117 TCGA-B0-5120 TCGA-B0-5691 
       15.29        62.89        19.27        17.59        16.21       112.80 
TCGA-B0-5697 TCGA-B0-5709 TCGA-B0-5812 TCGA-B2-3923 TCGA-B2-5636 TCGA-B4-5378 
       60.33       102.44        97.41        11.90         8.71         5.75 
TCGA-B4-5838 TCGA-B8-4619 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5552 
        5.46         0.62         0.26        17.16        16.60        12.89 
TCGA-BP-4159 TCGA-BP-4163 TCGA-BP-4166 TCGA-BP-4169 TCGA-BP-4177 TCGA-BP-4329 
       85.48        93.34         0.43        23.05        54.90        27.78 
TCGA-BP-4332 TCGA-BP-4334 TCGA-BP-4337 TCGA-BP-4344 TCGA-BP-4345 TCGA-BP-4355 
       37.25        21.21         0.07        54.77        49.84        31.33 
TCGA-BP-4759 TCGA-BP-4760 TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4769 TCGA-BP-4770 
       77.98        77.62        44.15        41.75        61.68        10.82 
TCGA-BP-4784 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4801 TCGA-BP-4970 
       60.95        48.95        36.53        20.38        36.95        14.20 
TCGA-BP-4972 TCGA-BP-4994 TCGA-BP-4995 TCGA-BP-4998 TCGA-BP-5008 TCGA-BP-5177 
       49.35        42.97        45.07        30.61        35.21         9.63 
TCGA-BP-5182 TCGA-BP-5187 TCGA-BP-5199 TCGA-CJ-4889 TCGA-CJ-4899 TCGA-CJ-4905 
       38.30        13.35        44.52        63.95        50.20        49.15 
TCGA-CJ-4907 TCGA-CJ-4918 TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 
       49.25         3.02        25.25        18.12        61.91        62.10 
TCGA-CJ-5689 TCGA-CW-5583 TCGA-CW-5589 TCGA-CW-5591 TCGA-CZ-5467 TCGA-DV-5565 
       53.26        81.83        78.15        74.63         2.40        43.69 
TCGA-DV-5567 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5576 
       29.88        11.67        37.15        23.77        23.90 

subtype1 subtype2 subtype3 
    0.10     0.13     0.07 
subtype1 subtype2 subtype3 
  120.59    93.99   112.80 
subtype1 subtype2 subtype3 
  38.700   30.855   36.530 
[1] "0.1 - 120.6 (38.7)" "0.1 - 94.0 (30.9)"  "0.1 - 112.8 (36.5)"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[175] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[205] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[217] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[229] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[253] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[259] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[271] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[277] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[283] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[289] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[301] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[319] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[331] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[337] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[343] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[349] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[355] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[367] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[373] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[379] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[391] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[397] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[421] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[433] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[439] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[445] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[451] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[457] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[463] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[469] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[475] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[175] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[205] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[217] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[229] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[253] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[259] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[271] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[277] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[283] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[289] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[301] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[319] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[331] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[337] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[343] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[349] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[355] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[367] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[373] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[379] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[391] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[397] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[421] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[433] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[439] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[445] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[451] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[457] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[463] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[469] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[475] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[175] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[205] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[217] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[229] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[253] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[259] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[271] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[277] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[283] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[289] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[301] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[319] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[331] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[337] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[343] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[349] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[355] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[367] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[373] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[379] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[391] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[397] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[421] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[433] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[439] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[445] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[451] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[457] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[463] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[469] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[475] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
D7V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1     118       19        38       24
  subtype2      55       20        61       44
  subtype3      60       10        20       11
D7V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1 118  22  57   2
  subtype2  59  27  88   6
  subtype3  61  11  26   3
D7V4, multiclass
D7V5, binary
          cls
clus        0  1
  subtype1 96  2
  subtype2 85 12
  subtype3 47  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   96    2
  subtype2   85   12
  subtype3   47    3
   clus
vv  subtype1 subtype2 subtype3
  0       96       85       47
  1        2       12        3
D7V6, binary
          cls
clus         0   1
  subtype1 175  24
  subtype2 136  44
  subtype3  91  10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  175   24
  subtype2  136   44
  subtype3   91   10
    clus
vv   subtype1 subtype2 subtype3
  M0      175      136       91
  M1       24       44       10
D7V7, binary
          cls
clus         0   1
  subtype1  91 108
  subtype2  44 136
  subtype3  32  69
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   91  108
  subtype2   44  136
  subtype3   32   69
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       91       44       32
  MALE        108      136       69
D7V8, continuous
D7V9, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype2"              
clus
subtype1 subtype2 
       1        2 
character(0)

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1  58  15
  subtype2 167  48
  subtype3  95  97
subtype1 subtype2 subtype3 
      73      215      192 
subtype1 subtype2 subtype3 
      15       48       97 
$subtype1
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3362 TCGA-A3-3363 TCGA-A3-3374 TCGA-AK-3427 
       24.16        25.81        51.25        10.49        43.17        84.36 
TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 
       72.07        57.34        46.78        45.90        37.55        12.13 
TCGA-AS-3777 TCGA-B0-4699 TCGA-B0-4823 TCGA-B0-4834 TCGA-B0-5083 TCGA-B0-5100 
        1.32         3.58        14.93        68.71        15.29        62.89 
TCGA-B0-5117 TCGA-B0-5120 TCGA-B0-5691 TCGA-B0-5695 TCGA-B0-5697 TCGA-B0-5700 
       17.59        16.21       112.80        46.68        60.33        35.57 
TCGA-B0-5812 TCGA-B2-3923 TCGA-B2-4098 TCGA-B2-5636 TCGA-B2-5639 TCGA-B4-5378 
       97.41        11.90         1.64         8.71        13.71         5.75 
TCGA-B4-5835 TCGA-B8-4619 TCGA-B8-4621 TCGA-B8-5165 TCGA-B8-5546 TCGA-B8-5552 
        0.53         0.62        14.17         0.26        16.60        12.89 
TCGA-BP-4166 TCGA-BP-4177 TCGA-BP-4334 TCGA-BP-4756 TCGA-BP-4760 TCGA-BP-4762 
        0.43        54.90        21.21        12.30        77.62        44.15 
TCGA-BP-4769 TCGA-BP-4784 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4801 TCGA-BP-4807 
       61.68        60.95        36.53        20.38        36.95         6.94 
TCGA-BP-4970 TCGA-BP-4972 TCGA-BP-4994 TCGA-BP-4995 TCGA-BP-5008 TCGA-BP-5182 
       14.20        49.35        42.97        45.07        35.21        38.30 
TCGA-BP-5187 TCGA-CJ-4889 TCGA-CJ-4907 TCGA-CJ-5681 TCGA-CJ-5683 TCGA-CJ-5684 
       13.35        63.95        49.25        18.12        62.10        73.32 
TCGA-CJ-5689 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5589 TCGA-CW-5591 TCGA-CZ-5467 
       53.26        92.02         5.39        78.15        74.63         2.40 
TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5567 TCGA-DV-5569 TCGA-DV-5573 TCGA-DV-5574 
       43.69        45.96        29.88        11.67        37.15        23.77 
TCGA-DV-5576 
       23.90 

$subtype2
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.56        38.99        24.69 
TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 
       37.38        23.21        48.82        31.04        45.53        29.92 
TCGA-A3-3352 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 
       18.44        42.97        42.28        28.67        34.65        25.51 
TCGA-A3-3372 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3380 TCGA-A3-3385 TCGA-AK-3428 
       24.16        10.98        35.18        18.64        23.87        73.08 
TCGA-AK-3429 TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3455 
       66.31        68.58        48.36        58.49        28.70        22.45 
TCGA-AK-3458 TCGA-AK-3460 TCGA-AK-3461 TCGA-B0-4693 TCGA-B0-4701 TCGA-B0-4706 
       38.40        31.27        28.04         2.53         6.84         0.85 
TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4811 TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4824 
        0.10        20.25        39.32         1.55        14.01        48.10 
TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 TCGA-B0-4845 
       10.09        78.41        27.42        53.85         4.57        65.26 
TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5077 
       39.42        26.04         2.27        35.47        70.52        42.44 
TCGA-B0-5085 TCGA-B0-5099 TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5110 
       25.28        15.95        90.84        90.44        52.50        35.90 
TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5690 
       11.80        26.20         1.94        18.21        21.44        79.13 
TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5703 
       48.89       101.10        56.78        84.92        90.08        39.52 
TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 
      120.59        48.03        96.36        89.49        61.28        12.20 
TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5635 TCGA-B4-5377 TCGA-B4-5834 
       12.26         6.18         6.64        10.36         9.57         1.25 
TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 
        4.64         0.36         0.23        16.80        27.16        27.52 
TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5553 
       25.02        24.62         5.95         7.89         0.76        14.30 
TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4160 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4164 
      111.02        85.48        94.72        90.28       101.06        32.61 
TCGA-BP-4165 TCGA-BP-4170 TCGA-BP-4173 TCGA-BP-4174 TCGA-BP-4325 TCGA-BP-4327 
       99.85        77.03        62.24        61.78        97.45         3.55 
TCGA-BP-4330 TCGA-BP-4332 TCGA-BP-4335 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4344 
       62.07        37.25        15.12        18.48        52.24        54.77 
TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4351 TCGA-BP-4355 TCGA-BP-4758 
       49.08        44.94        12.23        31.86        31.33        72.59 
TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4774 TCGA-BP-4775 TCGA-BP-4777 
       71.80        48.07        13.15        61.94        60.56        56.91 
TCGA-BP-4789 TCGA-BP-4961 TCGA-BP-4963 TCGA-BP-4965 TCGA-BP-4968 TCGA-BP-4969 
       48.95        63.62        60.30        61.51        57.37        58.98 
TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4981 
       45.50         7.23        47.11        53.65        14.93        36.07 
TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4989 TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 
       33.30        36.95         3.85        46.45        16.44         5.79 
TCGA-BP-4999 TCGA-BP-5000 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 
       41.62        18.51        38.70        37.02        27.62        37.48 
TCGA-BP-5168 TCGA-BP-5173 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5183 
       48.10         1.78        52.27         9.63        49.15        42.44 
TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5190 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5200 
       37.25        22.78        33.21        23.47        13.41        34.95 
TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4640 TCGA-CJ-4643 
       31.27         0.95        59.84        75.88        65.69        58.92 
TCGA-CJ-4644 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4885 
       11.05        75.06        77.36        64.27        71.87        69.86 
TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 
       64.14        30.61        49.97        24.62        27.65        59.44 
TCGA-CJ-4899 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4908 TCGA-CJ-4916 
       50.20        51.25        58.92        49.15        50.30        45.11 
TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5678 TCGA-CJ-5686 TCGA-CJ-6032 TCGA-CW-5583 
       72.00        79.86        18.84        67.00        83.77        81.83 
TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4853 TCGA-CZ-4856 
       85.78        73.18        75.98        79.89        25.45         0.59 
TCGA-CZ-4859 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-5453 TCGA-CZ-5455 TCGA-CZ-5457 
       58.75        63.35        93.04         0.82        18.44        55.30 
TCGA-CZ-5460 TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5470 TCGA-CZ-5982 TCGA-CZ-5986 
       47.01        21.76        47.54        12.69        80.19        12.26 
TCGA-CZ-5989 TCGA-DV-5568 TCGA-DV-5575 TCGA-EU-5904 TCGA-EU-5906 
       62.63        12.16        33.04        18.08         6.77 

$subtype3
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 
        0.53        39.12        49.08        49.02        37.15        36.33 
TCGA-A3-3335 TCGA-A3-3347 TCGA-A3-3357 TCGA-A3-3378 TCGA-A3-3382 TCGA-A3-3387 
       21.83        52.93        46.85        20.71        18.87        20.25 
TCGA-AK-3426 TCGA-AK-3431 TCGA-AK-3436 TCGA-AK-3445 TCGA-AK-3451 TCGA-B0-4688 
       29.06        60.92        67.17        42.05        48.69         3.22 
TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 
        1.41         4.57         3.48        28.47        18.97         1.38 
TCGA-B0-4700 TCGA-B0-4703 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4810 
       65.06         5.98        19.69        43.96         6.61         8.75 
TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4821 
        0.59        49.02        35.54        27.88         6.02        40.41 
TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4842 TCGA-B0-4843 TCGA-B0-4844 
       29.06        40.70        45.30        53.79        10.52        10.29 
TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5084 TCGA-B0-5088 
       29.00        19.99         7.30         7.66         7.27        14.24 
TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 
       15.09        10.95         8.05         2.20        21.86        52.08 
TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5116 TCGA-B0-5400 TCGA-B0-5402 
       30.48        29.95        19.27        21.60        37.22        14.76 
TCGA-B0-5694 TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5709 TCGA-B2-5633 TCGA-B2-5641 
       15.42        56.94        79.36       102.44        11.77        10.65 
TCGA-B4-5832 TCGA-B4-5838 TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-5158 TCGA-B8-5162 
        0.23         5.46        23.31         7.43         9.63         0.72 
TCGA-B8-5163 TCGA-B8-5545 TCGA-B8-5549 TCGA-B8-5550 TCGA-B8-5551 TCGA-BP-4163 
        0.13        17.16         6.38        14.27         0.49        93.34 
TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4329 TCGA-BP-4337 
       89.36        23.05        64.27        53.39        27.78         0.07 
TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4345 TCGA-BP-4352 TCGA-BP-4353 
       93.99        74.17        62.86        49.84        11.31        12.33 
TCGA-BP-4354 TCGA-BP-4759 TCGA-BP-4761 TCGA-BP-4763 TCGA-BP-4770 TCGA-BP-4771 
       33.99        77.98         5.98        41.75        10.82         5.29 
TCGA-BP-4781 TCGA-BP-4782 TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 
       68.38        11.64        15.75        36.39        10.98        37.25 
TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4964 
        6.67        47.97        87.45        71.41        58.68        61.22 
TCGA-BP-4967 TCGA-BP-4971 TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 
        6.71        48.89        46.42        31.27        25.81        27.19 
TCGA-BP-4998 TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5170 TCGA-BP-5174 
       30.61        36.23        28.83         6.31        79.27        74.20 
TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5189 TCGA-BP-5191 TCGA-BP-5195 
       30.64        62.86        74.40        27.02        31.76        24.59 
TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 
       33.47        19.82        44.52        46.55        63.25        73.22 
TCGA-CJ-4638 TCGA-CJ-4641 TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4871 TCGA-CJ-4872 
       14.17        54.61        21.21        83.97        79.63        47.18 
TCGA-CJ-4873 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4888 TCGA-CJ-4890 
       74.24        66.18        61.91        57.83        51.48        68.55 
TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 TCGA-CJ-4912 
       26.89        39.45        41.88        47.67        49.94        54.44 
TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5677 
        3.02         4.57        18.81        63.85        84.66        25.71 
TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5682 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 
       22.29        25.25        61.91        60.99        53.42        75.55 
TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5588 TCGA-CW-5590 TCGA-CW-6087 
       62.63         7.36        64.57        66.28        35.34         1.35 
TCGA-CW-6090 TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 
       83.90        18.74        46.16        47.08        69.21         6.74 
TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5452 TCGA-CZ-5454 
       14.63        60.59         5.42        61.38        58.82        23.74 
TCGA-CZ-5456 TCGA-CZ-5458 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 TCGA-CZ-5468 
       56.28        56.91        10.85        10.22        57.21         1.94 
TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 TCGA-CZ-5988 TCGA-EU-5905 
       31.07        67.92        65.65        14.30        22.78         3.88 

subtype1 subtype2 subtype3 
    0.26     0.10     0.07 
subtype1 subtype2 subtype3 
  112.80   120.59   102.44 
subtype1 subtype2 subtype3 
  35.570   38.700   30.625 
[1] "0.3 - 112.8 (35.6)" "0.1 - 120.6 (38.7)" "0.1 - 102.4 (30.6)"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[151] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[217] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[229] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[247] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[259] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[271] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[277] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[283] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[289] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[319] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[325] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[331] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[337] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[355] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[379] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[385] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[391] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[397] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[403] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[409] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[415] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[421] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[439] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[451] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[457] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[463] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[469] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[475] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[151] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[217] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[229] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[247] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[259] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[271] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[277] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[283] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[289] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[319] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[325] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[331] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[337] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[355] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[379] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[385] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[391] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[397] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[403] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[409] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[415] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[421] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[439] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[451] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[457] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[463] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[469] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[475] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[151] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[175] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[181] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[217] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[229] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[247] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[259] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[271] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[277] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[283] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[289] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[319] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[325] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[331] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[337] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[355] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[379] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[385] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[391] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[397] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[403] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[409] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[415] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[421] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[439] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[451] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[457] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[463] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[469] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[475] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
D8V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      54        6         9        4
  subtype2     126       22        44       23
  subtype3      53       21        66       52
D8V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1  55   6  11   1
  subtype2 126  27  61   1
  subtype3  57  27  99   9
D8V4, multiclass
D8V5, binary
          cls
clus         0   1
  subtype1  32   2
  subtype2 104   1
  subtype3  92  14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32    2
  subtype2  104    1
  subtype3   92   14
   clus
vv  subtype1 subtype2 subtype3
  0       32      104       92
  1        2        1       14
D8V6, binary
          cls
clus         0   1
  subtype1  69   4
  subtype2 191  24
  subtype3 142  50
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   69    4
  subtype2  191   24
  subtype3  142   50
    clus
vv   subtype1 subtype2 subtype3
  M0       69      191      142
  M1        4       24       50
D8V7, binary
          cls
clus         0   1
  subtype1  23  50
  subtype2  93 122
  subtype3  51 141
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   23   50
  subtype2   93  122
  subtype3   51  141
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       23       93       51
  MALE         50      122      141
D8V8, continuous
D8V9, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype2"              
[4] "subtype3"              
clus
subtype1 subtype2 subtype3 
       1        1        1 
character(0)

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2        0   1
  subtype1  80  34
  subtype2 161  50
  subtype3  80  77
subtype1 subtype2 subtype3 
     114      211      157 
subtype1 subtype2 subtype3 
      34       50       77 
$subtype1
TCGA-A3-3308 TCGA-A3-3313 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3347 TCGA-A3-3349 
        0.53        24.16        49.08        49.02        52.93        45.53 
TCGA-A3-3362 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3431 
       51.25        10.98        35.18        20.25       109.91        60.92 
TCGA-AK-3461 TCGA-AK-3465 TCGA-B0-4688 TCGA-B0-4697 TCGA-B0-4700 TCGA-B0-4703 
       28.04        12.13         3.22        18.97        65.06         5.98 
TCGA-B0-4811 TCGA-B0-4813 TCGA-B0-4816 TCGA-B0-4822 TCGA-B0-4823 TCGA-B0-4827 
       39.32         0.59        35.54        36.53        14.93        29.06 
TCGA-B0-4839 TCGA-B0-4843 TCGA-B0-4945 TCGA-B0-5080 TCGA-B0-5095 TCGA-B0-5100 
       53.85        10.52        70.52         7.30         8.05        62.89 
TCGA-B0-5108 TCGA-B0-5119 TCGA-B0-5120 TCGA-B0-5691 TCGA-B0-5702 TCGA-B0-5709 
       29.95         1.94        16.21       112.80        52.73       102.44 
TCGA-B0-5710 TCGA-B0-5812 TCGA-B2-5636 TCGA-B4-5838 TCGA-B8-4619 TCGA-B8-5162 
       48.03        97.41         8.71         5.46         0.62         0.72 
TCGA-B8-5163 TCGA-B8-5545 TCGA-B8-5550 TCGA-B8-5552 TCGA-BP-4160 TCGA-BP-4167 
        0.13        17.16        14.27        12.89        94.72        89.36 
TCGA-BP-4169 TCGA-BP-4173 TCGA-BP-4177 TCGA-BP-4331 TCGA-BP-4332 TCGA-BP-4337 
       23.05        62.24        54.90        80.65        37.25         0.07 
TCGA-BP-4341 TCGA-BP-4343 TCGA-BP-4345 TCGA-BP-4353 TCGA-BP-4760 TCGA-BP-4762 
       52.24        62.86        49.84        12.33        77.62        44.15 
TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4789 TCGA-BP-4790 
       41.75        71.80        61.68        10.82        48.95        36.53 
TCGA-BP-4795 TCGA-BP-4801 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4969 TCGA-BP-4970 
       20.38        36.95        47.97         6.94        58.98        14.20 
TCGA-BP-4971 TCGA-BP-4972 TCGA-BP-4982 TCGA-BP-4985 TCGA-BP-5008 TCGA-BP-5010 
       48.89        49.35        33.30        31.27        35.21        28.83 
TCGA-BP-5170 TCGA-BP-5177 TCGA-BP-5182 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5196 
       79.27         9.63        38.30        37.25        22.78        33.47 
TCGA-BP-5198 TCGA-BP-5199 TCGA-BP-5200 TCGA-CJ-4634 TCGA-CJ-4636 TCGA-CJ-4642 
       19.82        44.52        34.95        59.84        63.25        53.49 
TCGA-CJ-4872 TCGA-CJ-4882 TCGA-CJ-4886 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4902 
       47.18        61.91        64.14        63.95        68.55        49.94 
TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-4918 TCGA-CJ-5671 TCGA-CJ-5680 
       49.15        49.25        50.30         3.02        63.85        25.25 
TCGA-CJ-6031 TCGA-CW-5583 TCGA-CW-5588 TCGA-CW-6088 TCGA-CW-6090 TCGA-CZ-4860 
       62.63        81.83        66.28        75.98        83.90         6.74 
TCGA-CZ-5988 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5575 TCGA-DV-5576 TCGA-EU-5905 
       22.78        37.15        23.77        33.04        23.90         3.88 

$subtype2
TCGA-A3-3307 TCGA-A3-3311 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 
       47.21        39.12        49.58        48.56        36.33        38.99 
TCGA-A3-3326 TCGA-A3-3331 TCGA-A3-3351 TCGA-A3-3358 TCGA-A3-3365 TCGA-A3-3367 
       37.38        48.82        29.92        42.97        28.67        34.65 
TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3380 TCGA-A3-3382 TCGA-A3-3383 TCGA-A3-3385 
       25.51        24.16        18.64        18.87        28.31        23.87 
TCGA-AK-3428 TCGA-AK-3429 TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 TCGA-AK-3454 
       73.08        66.31        68.58        48.36        58.49        28.70 
TCGA-AK-3455 TCGA-AK-3460 TCGA-B0-4693 TCGA-B0-4701 TCGA-B0-4706 TCGA-B0-4710 
       22.45        31.27         2.53         6.84         0.85         3.12 
TCGA-B0-4714 TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 
        0.10         1.55        14.01        48.10        10.09        78.41 
TCGA-B0-4834 TCGA-B0-4838 TCGA-B0-4841 TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 
       68.71        27.42         4.57        65.26        39.42        26.04 
TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5077 TCGA-B0-5085 TCGA-B0-5099 TCGA-B0-5102 
        2.27        35.47        42.44        25.28        15.95        90.84 
TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5121 
       90.44        35.90        11.80        26.20        21.60        18.21 
TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 
       21.44        14.76        79.13        48.89       101.10        15.42 
TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5703 
       46.68        56.78        84.92        90.08        35.57        39.52 
TCGA-B0-5705 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 TCGA-B2-4099 
      120.59        96.36        89.49        61.28        12.20        12.26 
TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5639 TCGA-B2-A4SR 
        6.18         6.64        11.77        10.36        13.71        11.28 
TCGA-B4-5377 TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 
        9.57         1.25         4.64         0.36         0.23        16.80 
TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 
       27.16        27.52        25.02        24.62         5.95         7.89 
TCGA-B8-5164 TCGA-B8-5165 TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5553 TCGA-BP-4158 
        0.76         0.26        16.60         6.38        14.30       111.02 
TCGA-BP-4159 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4164 TCGA-BP-4165 TCGA-BP-4166 
       85.48        90.28       101.06        32.61        99.85         0.43 
TCGA-BP-4174 TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4335 
       61.78        97.45         3.55        27.78        62.07        15.12 
TCGA-BP-4340 TCGA-BP-4344 TCGA-BP-4347 TCGA-BP-4355 TCGA-BP-4756 TCGA-BP-4758 
       18.48        54.77        44.94        31.33        12.30        72.59 
TCGA-BP-4759 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4775 TCGA-BP-4776 TCGA-BP-4961 
       77.98        48.07        13.15        60.56        13.48        63.62 
TCGA-BP-4965 TCGA-BP-4968 TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 
       61.51        57.37        45.50         7.23        47.11        53.65 
TCGA-BP-4981 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 TCGA-BP-4995 
       36.07        36.95        46.45        16.44         5.79        45.07 
TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5007 TCGA-BP-5168 TCGA-BP-5173 TCGA-BP-5174 
       38.70        37.02        37.48        48.10         1.78        74.20 
TCGA-BP-5176 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5185 TCGA-BP-5190 TCGA-BP-5192 
       52.27        49.15        42.44        37.22        33.21        23.47 
TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4639 TCGA-CJ-4643 
       13.41        24.59        31.27         0.95        75.88        58.92 
TCGA-CJ-4644 TCGA-CJ-4870 TCGA-CJ-4875 TCGA-CJ-4878 TCGA-CJ-4885 TCGA-CJ-4892 
       11.05        49.22        77.36        71.87        69.86        49.97 
TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4899 TCGA-CJ-4903 TCGA-CJ-4904 
       24.62        27.65        59.44        50.20        51.25        58.92 
TCGA-CJ-4912 TCGA-CJ-4916 TCGA-CJ-4920 TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5678 
       54.44        45.11         4.57        72.00        79.86        18.84 
TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 TCGA-CJ-6032 
       18.12        61.91        62.10        73.32        67.00        83.77 
TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5589 TCGA-CW-6093 
       92.02         5.39        85.78        73.18        78.15        79.89 
TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 
       25.45         0.59        58.75        60.59        63.35        93.04 
TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 
        5.42        61.38        63.42         0.82        23.74        18.44 
TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5462 TCGA-CZ-5463 
       55.30        56.91        55.30        47.01        10.22        21.76 
TCGA-CZ-5465 TCGA-CZ-5467 TCGA-CZ-5982 TCGA-CZ-5985 TCGA-CZ-5986 TCGA-CZ-5989 
       47.54         2.40        80.19        65.65        12.26        62.63 
TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5568 TCGA-DV-5569 TCGA-EU-5904 TCGA-EU-5906 
       43.69        45.96        12.16        11.67        18.08         6.77 
TCGA-EU-5907 
        4.14 

$subtype3
TCGA-A3-3319 TCGA-A3-3346 TCGA-A3-3357 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3378 
       37.15         4.50        46.85        10.49        43.17        20.71 
TCGA-AK-3426 TCGA-AK-3427 TCGA-AK-3430 TCGA-AK-3433 TCGA-AK-3436 TCGA-AK-3440 
       29.06        84.36        15.78        72.07        67.17        57.34 
TCGA-AK-3443 TCGA-AK-3445 TCGA-AK-3447 TCGA-AK-3451 TCGA-AK-3453 TCGA-AK-3456 
       46.78        42.05        40.01        48.69        45.90        37.55 
TCGA-AK-3458 TCGA-AS-3777 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 
       38.40         1.32         1.41         4.57         3.48        28.47 
TCGA-B0-4698 TCGA-B0-4699 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4718 
        1.38         3.58        19.69        43.96         6.61        20.25 
TCGA-B0-4810 TCGA-B0-4815 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4836 
        8.75        49.02        27.88         6.02        40.41        40.70 
TCGA-B0-4837 TCGA-B0-4842 TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5081 
       45.30        53.79        10.29        29.00        19.99         7.66 
TCGA-B0-5083 TCGA-B0-5084 TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5096 
       15.29         7.27        14.24        15.09        10.95         2.20 
TCGA-B0-5097 TCGA-B0-5098 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5109 TCGA-B0-5117 
       21.86        52.08        52.50        30.48        19.27        17.59 
TCGA-B0-5400 TCGA-B0-5697 TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5707 TCGA-B2-3923 
       37.22        60.33        56.94        79.36        92.98        11.90 
TCGA-B2-4098 TCGA-B2-5641 TCGA-B4-5378 TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4143 
        1.64        10.65         5.75         0.23         0.53        23.31 
TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-5158 TCGA-B8-5551 TCGA-BP-4163 TCGA-BP-4176 
        7.43        14.17         9.63         0.49        93.34        64.27 
TCGA-BP-4326 TCGA-BP-4334 TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4346 TCGA-BP-4351 
       53.39        21.21        93.99        74.17        49.08        31.86 
TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4761 TCGA-BP-4771 TCGA-BP-4777 TCGA-BP-4781 
       11.31        33.99         5.98         5.29        56.91        68.38 
TCGA-BP-4782 TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4803 
       11.64        15.75        36.39        10.98        37.25         6.67 
TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4967 TCGA-BP-4977 
       87.45        71.41        58.68        60.30         6.71        14.93 
TCGA-BP-4983 TCGA-BP-4986 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4994 TCGA-BP-4998 
       46.42        25.81        27.19         3.85        42.97        30.61 
TCGA-BP-5000 TCGA-BP-5009 TCGA-BP-5169 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 
       18.51        36.23         6.31        30.64        62.86        74.40 
TCGA-BP-5187 TCGA-BP-5189 TCGA-BP-5191 TCGA-CJ-4635 TCGA-CJ-4637 TCGA-CJ-4638 
       13.35        27.02        31.76        46.55        73.22        14.17 
TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4869 TCGA-CJ-4871 TCGA-CJ-4873 TCGA-CJ-4876 
       65.69        54.61        83.97        79.63        74.24        64.27 
TCGA-CJ-4881 TCGA-CJ-4884 TCGA-CJ-4887 TCGA-CJ-4888 TCGA-CJ-4891 TCGA-CJ-4895 
       66.18        57.83        30.61        51.48        26.89        39.45 
TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4923 TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5679 
       41.88        47.67        18.81        84.66        25.71        22.29 
TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6033 TCGA-CW-5580 
       53.26        60.99        53.42        75.55         7.36        64.57 
TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6087 TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 
       35.34        74.63         1.35        18.74        46.16        47.08 
TCGA-CZ-4858 TCGA-CZ-4861 TCGA-CZ-5452 TCGA-CZ-5456 TCGA-CZ-5461 TCGA-CZ-5464 
       69.21        14.63        58.82        56.28        10.85        57.21 
TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5984 TCGA-CZ-5987 
       22.52         1.94        31.07        12.69        67.92        14.30 
TCGA-DV-5567 
       29.88 

subtype1 subtype2 subtype3 
    0.07     0.10     0.23 
subtype1 subtype2 subtype3 
  112.80   120.59    93.99 
subtype1 subtype2 subtype3 
   37.25    36.95    31.07 
[1] "0.1 - 112.8 (37.2)" "0.1 - 120.6 (37.0)" "0.2 - 94.0 (31.1)" 
  [1] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[187] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[247] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[265] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[271] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[277] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[283] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[301] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[319] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[325] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[331] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[337] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[343] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[349] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[355] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[361] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[367] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[373] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[379] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[391] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[397] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[403] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[409] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[415] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[421] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[427] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[445] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[451] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[457] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[469] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[475] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[481] "subtype2" "subtype2"
  [1] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[187] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[247] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[265] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[271] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[277] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[283] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[301] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[319] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[325] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[331] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[337] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[343] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[349] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[355] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[361] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[367] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[373] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[379] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[391] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[397] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[403] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[409] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[415] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[421] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[427] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[445] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[451] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[457] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[469] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[475] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[481] "subtype2" "subtype2"
  [1] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [91] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[103] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[157] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[187] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[223] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[247] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[265] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[271] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[277] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[283] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[295] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[301] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[319] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[325] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[331] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[337] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[343] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[349] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[355] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[361] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[367] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[373] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[379] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[391] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[397] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[403] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[409] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[415] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[421] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[427] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[445] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[451] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[457] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[469] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[475] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[481] "subtype2" "subtype2"
D9V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      63       11        30       10
  subtype2     116       21        46       28
  subtype3      49       20        48       40
D9V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1  65  11  34   4
  subtype2 117  27  65   2
  subtype3  51  25  76   5
D9V4, multiclass
D9V5, binary
          cls
clus        0  1
  subtype1 54  3
  subtype2 94  2
  subtype3 74 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   54    3
  subtype2   94    2
  subtype3   74   13
   clus
vv  subtype1 subtype2 subtype3
  0       54       94       74
  1        3        2       13
D9V6, binary
          cls
clus         0   1
  subtype1 105   9
  subtype2 183  28
  subtype3 117  40
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  105    9
  subtype2  183   28
  subtype3  117   40
    clus
vv   subtype1 subtype2 subtype3
  M0      105      183      117
  M1        9       28       40
D9V7, binary
          cls
clus         0   1
  subtype1  36  78
  subtype2  86 125
  subtype3  41 116
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   36   78
  subtype2   86  125
  subtype3   41  116
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       36       86       41
  MALE         78      125      116
D9V8, continuous
D9V9, continuous
[1] "Remove cluster labels:" "subtype2"               "subtype3"              
clus
subtype2 subtype3 
       2        2 
character(0)

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1  88  72
  subtype2  23  14
  subtype3 210  75
subtype1 subtype2 subtype3 
     160       37      285 
subtype1 subtype2 subtype3 
      72       14       75 
$subtype1
TCGA-A3-3308 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3347 TCGA-A3-3387 TCGA-AK-3425 
        0.53        49.08        49.02        52.93        20.25       109.91 
TCGA-AK-3426 TCGA-AK-3431 TCGA-AK-3445 TCGA-B0-4688 TCGA-B0-4690 TCGA-B0-4691 
       29.06        60.92        42.05         3.22         1.41         4.57 
TCGA-B0-4694 TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4700 TCGA-B0-4703 TCGA-B0-4707 
        3.48        18.97         1.38        65.06         5.98        19.69 
TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4810 TCGA-B0-4811 TCGA-B0-4813 TCGA-B0-4815 
       43.96         6.61         8.75        39.32         0.59        49.02 
TCGA-B0-4816 TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4823 TCGA-B0-4827 
       35.54         6.02        40.41        36.53        14.93        29.06 
TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5080 
       40.70        45.30        10.52        10.29        29.00         7.30 
TCGA-B0-5081 TCGA-B0-5084 TCGA-B0-5088 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 
        7.66         7.27        14.24         8.05         2.20        21.86 
TCGA-B0-5098 TCGA-B0-5100 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5120 TCGA-B0-5400 
       52.08        62.89        29.95        19.27        16.21        37.22 
TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5812 TCGA-B2-5636 TCGA-B2-5641 TCGA-B4-5378 
       52.73       102.44        97.41         8.71        10.65         5.75 
TCGA-B4-5838 TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5545 
        5.46        23.31         7.43         0.72         0.13        17.16 
TCGA-B8-5550 TCGA-B8-5551 TCGA-B8-5552 TCGA-BP-4160 TCGA-BP-4163 TCGA-BP-4167 
       14.27         0.49        12.89        94.72        93.34        89.36 
TCGA-BP-4169 TCGA-BP-4173 TCGA-BP-4176 TCGA-BP-4177 TCGA-BP-4326 TCGA-BP-4332 
       23.05        62.24        64.27        54.90        53.39        37.25 
TCGA-BP-4337 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4344 TCGA-BP-4345 TCGA-BP-4352 
        0.07        74.17        62.86        54.77        49.84        11.31 
TCGA-BP-4354 TCGA-BP-4760 TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4769 TCGA-BP-4770 
       33.99        77.62        44.15        41.75        61.68        10.82 
TCGA-BP-4782 TCGA-BP-4787 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4797 
       11.64        15.75        48.95        36.53        20.38        36.39 
TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4959 TCGA-BP-4960 
       10.98        37.25        47.97         6.94        87.45        71.41 
TCGA-BP-4962 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4974 
       58.68         6.71        57.37        14.20        48.89         7.23 
TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4998 
       46.42        31.27        25.81        27.19         3.85        30.61 
TCGA-BP-5008 TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5170 TCGA-BP-5182 TCGA-BP-5187 
       35.21        28.83         6.31        79.27        38.30        13.35 
TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 
       33.47        19.82        44.52        46.55        63.25        73.22 
TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4642 TCGA-CJ-4871 TCGA-CJ-4872 TCGA-CJ-4873 
       65.69        54.61        53.49        79.63        47.18        74.24 
TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4895 TCGA-CJ-4901 
       66.18        61.91        63.95        68.55        39.45        47.67 
TCGA-CJ-4902 TCGA-CJ-4907 TCGA-CJ-4918 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5679 
       49.94        49.25         3.02        18.81        63.85        22.29 
TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6030 TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5588 
       53.26        60.99        75.55        62.63         7.36        66.28 
TCGA-CW-5589 TCGA-CW-6087 TCGA-CW-6090 TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 
       78.15         1.35        83.90        18.74        46.16        47.08 
TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-5456 TCGA-CZ-5464 TCGA-CZ-5988 TCGA-DV-5567 
       69.21         6.74        56.28        57.21        22.78        29.88 
TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5576 TCGA-EU-5905 
       37.15        23.77        23.90         3.88 

$subtype2
TCGA-A3-3313 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3382 TCGA-AK-3427 TCGA-AK-3433 
       24.16        10.49        43.17        18.87        84.36        72.07 
TCGA-AK-3436 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3451 TCGA-AK-3453 
       67.17        57.34        46.78        40.01        48.69        45.90 
TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4699 TCGA-B0-4834 TCGA-B0-4842 TCGA-B0-5083 
       12.13         1.32         3.58        68.71        53.79        15.29 
TCGA-B0-5117 TCGA-B0-5707 TCGA-B2-3923 TCGA-B2-4098 TCGA-B4-5835 TCGA-B8-4619 
       17.59        92.98        11.90         1.64         0.53         0.62 
TCGA-B8-4621 TCGA-BP-4334 TCGA-BP-4761 TCGA-BP-4994 TCGA-BP-5000 TCGA-CJ-4638 
       14.17        21.21         5.98        42.97        18.51        14.17 
TCGA-CJ-4869 TCGA-CJ-4888 TCGA-CJ-4891 TCGA-CJ-4900 TCGA-CJ-5677 TCGA-CJ-5680 
       83.97        51.48        26.89        41.88        25.71        25.25 
TCGA-CZ-5469 
       31.07 

$subtype3
TCGA-A3-3307 TCGA-A3-3311 TCGA-A3-3319 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3323 
       47.21        39.12        37.15        49.58        48.56        36.33 
TCGA-A3-3324 TCGA-A3-3326 TCGA-A3-3331 TCGA-A3-3346 TCGA-A3-3349 TCGA-A3-3351 
       38.99        37.38        48.82         4.50        45.53        29.92 
TCGA-A3-3357 TCGA-A3-3358 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 
       46.85        42.97        51.25        28.67        34.65        25.51 
TCGA-A3-3372 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3378 TCGA-A3-3380 TCGA-A3-3383 
       24.16        10.98        35.18        20.71        18.64        28.31 
TCGA-A3-3385 TCGA-AK-3428 TCGA-AK-3429 TCGA-AK-3430 TCGA-AK-3434 TCGA-AK-3444 
       23.87        73.08        66.31        15.78        68.58        48.36 
TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3456 TCGA-AK-3458 TCGA-AK-3460 
       58.49        28.70        22.45        37.55        38.40        31.27 
TCGA-AK-3461 TCGA-B0-4693 TCGA-B0-4696 TCGA-B0-4701 TCGA-B0-4706 TCGA-B0-4710 
       28.04         2.53        28.47         6.84         0.85         3.12 
TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4814 TCGA-B0-4817 TCGA-B0-4818 TCGA-B0-4824 
        0.10        20.25         1.55        27.88        14.01        48.10 
TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 TCGA-B0-4845 
       10.09        78.41        27.42        53.85         4.57        65.26 
TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5075 
       39.42        26.04         2.27        35.47        70.52        19.99 
TCGA-B0-5077 TCGA-B0-5085 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5099 TCGA-B0-5102 
       42.44        25.28        15.09        10.95        15.95        90.84 
TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 
       90.44        52.50        30.48        35.90        11.80        26.20 
TCGA-B0-5116 TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 
       21.60         1.94        18.21        21.44        14.76        79.13 
TCGA-B0-5691 TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 
      112.80        48.89       101.10        15.42        46.68        56.78 
TCGA-B0-5697 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5701 TCGA-B0-5703 
       60.33        84.92        90.08        35.57        56.94        39.52 
TCGA-B0-5705 TCGA-B0-5706 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 
      120.59        79.36        48.03        96.36        89.49        61.28 
TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 
       12.20        12.26         6.18         6.64        11.77        10.36 
TCGA-B2-5639 TCGA-B2-A4SR TCGA-B4-5377 TCGA-B4-5832 TCGA-B4-5834 TCGA-B4-5836 
       13.71        11.28         9.57         0.23         1.25         4.64 
TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 
        0.36         0.23        16.80        27.16        27.52        25.02 
TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5158 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5165 
       24.62         5.95         9.63         7.89         0.76         0.26 
TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4161 
       16.60         6.38        14.30       111.02        85.48        90.28 
TCGA-BP-4162 TCGA-BP-4164 TCGA-BP-4165 TCGA-BP-4166 TCGA-BP-4174 TCGA-BP-4325 
      101.06        32.61        99.85         0.43        61.78        97.45 
TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4331 TCGA-BP-4335 TCGA-BP-4338 
        3.55        27.78        62.07        80.65        15.12        93.99 
TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4351 TCGA-BP-4353 
       18.48        52.24        49.08        44.94        31.86        12.33 
TCGA-BP-4355 TCGA-BP-4756 TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4765 TCGA-BP-4766 
       31.33        12.30        72.59        77.98        71.80        48.07 
TCGA-BP-4768 TCGA-BP-4771 TCGA-BP-4775 TCGA-BP-4776 TCGA-BP-4777 TCGA-BP-4781 
       13.15         5.29        60.56        13.48        56.91        68.38 
TCGA-BP-4801 TCGA-BP-4803 TCGA-BP-4961 TCGA-BP-4963 TCGA-BP-4965 TCGA-BP-4969 
       36.95         6.67        63.62        60.30        61.51        58.98 
TCGA-BP-4972 TCGA-BP-4973 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4981 
       49.35        45.50        47.11        53.65        14.93        36.07 
TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 TCGA-BP-4995 
       33.30        36.95        46.45        16.44         5.79        45.07 
TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5007 TCGA-BP-5009 TCGA-BP-5168 TCGA-BP-5173 
       38.70        37.02        37.48        36.23        48.10         1.78 
TCGA-BP-5174 TCGA-BP-5175 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5178 TCGA-BP-5180 
       74.20        30.64        52.27         9.63        62.86        74.40 
TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5185 TCGA-BP-5186 TCGA-BP-5189 
       49.15        42.44        37.25        37.22        22.78        27.02 
TCGA-BP-5190 TCGA-BP-5191 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5195 TCGA-BP-5200 
       33.21        31.76        23.47        13.41        24.59        34.95 
TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 
       31.27         0.95        59.84        75.88        58.92        11.05 
TCGA-CJ-4870 TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4884 TCGA-CJ-4885 
       49.22        77.36        64.27        71.87        57.83        69.86 
TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 
       64.14        30.61        49.97        24.62        27.65        59.44 
TCGA-CJ-4899 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4908 TCGA-CJ-4912 
       50.20        51.25        58.92        49.15        50.30        54.44 
TCGA-CJ-4916 TCGA-CJ-4920 TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5676 TCGA-CJ-5678 
       45.11         4.57        72.00        79.86        84.66        18.84 
TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 TCGA-CJ-6028 
       18.12        61.91        62.10        73.32        67.00        53.42 
TCGA-CJ-6032 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5584 TCGA-CW-5585 
       83.77        64.57        92.02        81.83         5.39        85.78 
TCGA-CW-5587 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4853 
       73.18        35.34        74.63        75.98        79.89        25.45 
TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4863 TCGA-CZ-4864 
        0.59        58.75        14.63        60.59        63.35        93.04 
TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5451 TCGA-CZ-5452 TCGA-CZ-5453 TCGA-CZ-5454 
        5.42        61.38        63.42        58.82         0.82        23.74 
TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5461 
       18.44        55.30        56.91        55.30        47.01        10.85 
TCGA-CZ-5462 TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5466 TCGA-CZ-5467 TCGA-CZ-5468 
       10.22        21.76        47.54        22.52         2.40         1.94 
TCGA-CZ-5470 TCGA-CZ-5982 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5986 TCGA-CZ-5987 
       12.69        80.19        67.92        65.65        12.26        14.30 
TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5575 
       62.63        43.69        45.96        12.16        11.67        33.04 
TCGA-EU-5904 TCGA-EU-5906 TCGA-EU-5907 
       18.08         6.77         4.14 

subtype1 subtype2 subtype3 
    0.07     0.53     0.10 
subtype1 subtype2 subtype3 
  109.91    92.98   120.59 
subtype1 subtype2 subtype3 
   36.46    25.71    36.95 
[1] "0.1 - 109.9 (36.5)" "0.5 - 93.0 (25.7)"  "0.1 - 120.6 (37.0)"
  [1] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [43] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [97] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[115] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[187] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[205] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[223] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[259] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[277] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[295] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[301] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[307] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[313] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[319] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[325] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[331] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[343] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[349] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[355] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[361] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[367] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[373] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[379] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[385] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[391] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[397] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[415] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[421] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[427] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[433] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[439] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[445] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[451] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[457] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[463] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[469] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[475] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[481] "subtype3" "subtype3"
  [1] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [43] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [97] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[115] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[187] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[205] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[223] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[259] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[277] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[295] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[301] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[307] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[313] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[319] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[325] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[331] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[343] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[349] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[355] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[361] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[367] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[373] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[379] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[385] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[391] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[397] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[415] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[421] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[427] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[433] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[439] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[445] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[451] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[457] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[463] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[469] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[475] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[481] "subtype3" "subtype3"
  [1] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [37] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [43] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [73] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [91] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [97] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[115] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[187] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[199] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[205] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[223] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[235] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[259] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[277] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[295] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[301] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[307] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[313] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[319] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[325] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[331] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[343] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[349] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[355] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[361] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[367] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[373] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[379] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[385] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[391] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[397] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[415] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[421] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[427] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[433] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[439] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[445] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[451] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[457] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[463] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[469] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[475] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[481] "subtype3" "subtype3"
D10V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      58       15        56       31
  subtype2      17        8         5        7
  subtype3     153       29        63       40
D10V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1  60  17  76   7
  subtype2  17  10   8   2
  subtype3 156  36  91   2
D10V4, multiclass
D10V5, binary
          cls
clus         0   1
  subtype1  75  10
  subtype2  19   4
  subtype3 128   4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   75   10
  subtype2   19    4
  subtype3  128    4
   clus
vv  subtype1 subtype2 subtype3
  0       75       19      128
  1       10        4        4
D10V6, binary
          cls
clus         0   1
  subtype1 130  30
  subtype2  30   7
  subtype3 245  40
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  130   30
  subtype2   30    7
  subtype3  245   40
    clus
vv   subtype1 subtype2 subtype3
  M0      130       30      245
  M1       30        7       40
D10V7, binary
          cls
clus         0   1
  subtype1  42 118
  subtype2  13  24
  subtype3 108 177
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   42  118
  subtype2   13   24
  subtype3  108  177
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       42       13      108
  MALE        118       24      177
D10V8, continuous
[1] "Remove cluster labels:" "subtype2"              
clus
subtype1 subtype2 subtype3 
      12        2       22 
 [1] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [7] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[25] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[31] "subtype1" "subtype3" "subtype1" "subtype3"
D10V9, continuous
[1] "Remove cluster labels:" "subtype2"              
clus
subtype2 subtype3 
       1        3 
[1] "subtype3" "subtype3" "subtype3"

Clustering(11) Variable = MIRSEQ_MATURE_CNMF
D11V1, survival
          sevent
clus2       0  1
  subtype1 34 16
  subtype2 80 17
  subtype3 37 34
subtype1 subtype2 subtype3 
      50       97       71 
subtype1 subtype2 subtype3 
      16       17       34 
$subtype1
TCGA-A3-3317 TCGA-A3-3387 TCGA-AK-3465 TCGA-B0-4700 TCGA-B0-4811 TCGA-B0-5080 
       49.02        20.25        12.13        65.06        39.32         7.30 
TCGA-B0-5088 TCGA-B0-5691 TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5812 TCGA-B2-5636 
       14.24       112.80        52.73       102.44        97.41         8.71 
TCGA-B4-5838 TCGA-B8-5545 TCGA-B8-5550 TCGA-B8-5552 TCGA-BP-4173 TCGA-BP-4331 
        5.46        17.16        14.27        12.89        62.24        80.65 
TCGA-BP-4770 TCGA-BP-4787 TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4804 TCGA-BP-4807 
       10.82        15.75        48.95        36.53        47.97         6.94 
TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4998 TCGA-BP-5008 
       14.20        48.89        31.27        25.81        30.61        35.21 
TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-5671 TCGA-CJ-5677 TCGA-CJ-5680 TCGA-CJ-5682 
       63.95        68.55        63.85        25.71        25.25        61.91 
TCGA-CJ-5689 TCGA-CJ-6031 TCGA-CW-5583 TCGA-CW-5588 TCGA-CW-6088 TCGA-CW-6090 
       53.26        62.63        81.83        66.28        75.98        83.90 
TCGA-CW-6097 TCGA-CZ-4860 TCGA-CZ-4865 TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5575 
       18.74         6.74         5.42        37.15        23.77        33.04 
TCGA-DV-5576 TCGA-EU-5905 
       23.90         3.88 

$subtype2
TCGA-A3-3358 TCGA-AK-3440 TCGA-B0-4706 TCGA-B0-4710 TCGA-B0-4816 TCGA-B0-4818 
       42.97        57.34         0.85         3.12        35.54        14.01 
TCGA-B0-4833 TCGA-B0-4852 TCGA-B0-5085 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 
       78.41        35.47        25.28        21.44        14.76        79.13 
TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 
       48.89       101.10        15.42        46.68        56.78        60.33 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5710 
       84.92        90.08        35.57        39.52       120.59        48.03 
TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5639 
       96.36        89.49        61.28        11.77        10.36        13.71 
TCGA-B2-A4SR TCGA-B4-5377 TCGA-B4-5378 TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 
       11.28         9.57         5.75         1.25         4.64         0.36 
TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4153 TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5553 
        0.23        16.80        25.02        16.60         6.38        14.30 
TCGA-BP-4340 TCGA-BP-4759 TCGA-BP-4961 TCGA-BP-4965 TCGA-BP-4969 TCGA-BP-4973 
       18.48        77.98        63.62        61.51        58.98        45.50 
TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 
        7.23        47.11        53.65        36.07        33.30        36.95 
TCGA-BP-4992 TCGA-BP-4995 TCGA-BP-5001 TCGA-BP-5007 TCGA-CJ-4870 TCGA-CJ-4875 
       16.44        45.07        38.70        37.48        49.22        77.36 
TCGA-CJ-4878 TCGA-CJ-4899 TCGA-CJ-5675 TCGA-CJ-5678 TCGA-CJ-5681 TCGA-CJ-5683 
       71.87        50.20        79.86        18.84        18.12        62.10 
TCGA-CJ-5684 TCGA-CJ-5686 TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 
       73.32        67.00        83.77        92.02         5.39        85.78 
TCGA-CW-5587 TCGA-CW-5589 TCGA-CW-6093 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-4866 
       73.18        78.15        79.89        63.35        93.04        61.38 
TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 
       63.42         0.82        23.74        18.44        55.30        56.91 
TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5467 TCGA-CZ-5982 
       55.30        47.01        21.76        47.54         2.40        80.19 
TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5569 TCGA-EU-5904 
       12.26        62.63        43.69        45.96        11.67        18.08 
TCGA-EU-5906 
        6.77 

$subtype3
TCGA-AK-3458 TCGA-B0-4698 TCGA-B0-4712 TCGA-B0-4810 TCGA-B0-4815 TCGA-B0-4821 
       38.40         1.38        43.96         8.75        49.02        40.41 
TCGA-B0-4834 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-5075 TCGA-B0-5084 TCGA-B0-5400 
       68.71        40.70        45.30        19.99         7.27        37.22 
TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5707 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 
       56.94        79.36        92.98        10.65         0.23         0.53 
TCGA-B8-4621 TCGA-B8-5551 TCGA-BP-4761 TCGA-BP-4771 TCGA-BP-4797 TCGA-BP-4959 
       14.17         0.49         5.98         5.29        36.39        87.45 
TCGA-BP-4960 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4977 TCGA-BP-4988 TCGA-BP-4989 
       71.41         6.71        57.37        14.93        27.19         3.85 
TCGA-BP-4994 TCGA-BP-5000 TCGA-BP-5009 TCGA-CJ-4635 TCGA-CJ-4876 TCGA-CJ-4881 
       42.97        18.51        36.23        46.55        64.27        66.18 
TCGA-CJ-4887 TCGA-CJ-4888 TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-5672 
       30.61        51.48        26.89        39.45        41.88        72.00 
TCGA-CJ-5676 TCGA-CJ-5679 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6033 
       84.66        22.29        60.99        53.42        75.55         7.36 
TCGA-CW-5580 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6087 TCGA-CZ-4854 TCGA-CZ-4857 
       64.57        35.34        74.63         1.35        46.16        47.08 
TCGA-CZ-4858 TCGA-CZ-5452 TCGA-CZ-5456 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 
       69.21        58.82        56.28        10.85        10.22        57.21 
TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5984 TCGA-CZ-5985 
       22.52         1.94        31.07        12.69        67.92        65.65 
TCGA-CZ-5987 TCGA-CZ-5988 TCGA-DV-5567 TCGA-DV-5568 TCGA-EU-5907 
       14.30        22.78        29.88        12.16         4.14 

subtype1 subtype2 subtype3 
    3.88     0.23     0.23 
subtype1 subtype2 subtype3 
  112.80   120.59    92.98 
subtype1 subtype2 subtype3 
  34.125   45.070   37.220 
[1] "3.9 - 112.8 (34.1)" "0.2 - 120.6 (45.1)" "0.2 - 93.0 (37.2)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[217] "subtype2" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[217] "subtype2" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[217] "subtype2" "subtype3"
D11V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      31        2         8        9
  subtype2      50       13        22       12
  subtype3      24        9        17       21
D11V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 32  2 13  3
  subtype2 50 16 30  1
  subtype3 26  9 34  2
D11V4, multiclass
D11V5, binary
          cls
clus        0  1
  subtype1 18  2
  subtype2 44  1
  subtype3 34  5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   18    2
  subtype2   44    1
  subtype3   34    5
   clus
vv  subtype1 subtype2 subtype3
  0       18       44       34
  1        2        1        5
D11V6, binary
          cls
clus        0  1
  subtype1 42  8
  subtype2 86 11
  subtype3 51 20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   42    8
  subtype2   86   11
  subtype3   51   20
    clus
vv   subtype1 subtype2 subtype3
  M0       42       86       51
  M1        8       11       20
D11V7, binary
          cls
clus        0  1
  subtype1 15 35
  subtype2 38 59
  subtype3 12 59
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   35
  subtype2   38   59
  subtype3   12   59
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       15       38       12
  MALE         35       59       59
D11V8, continuous
D11V9, continuous
[1] "Remove cluster labels:" "subtype2"               "subtype3"              
clus
subtype2 subtype3 
       1        1 
character(0)

Clustering(12) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D12V1, survival
          sevent
clus2       0  1
  subtype1 85 21
  subtype2 14  5
  subtype3 52 41
subtype1 subtype2 subtype3 
     106       19       93 
subtype1 subtype2 subtype3 
      21        5       41 
$subtype1
TCGA-A3-3358 TCGA-B0-4706 TCGA-B0-4710 TCGA-B0-4811 TCGA-B0-4816 TCGA-B0-4818 
       42.97         0.85         3.12        39.32        35.54        14.01 
TCGA-B0-4833 TCGA-B0-4852 TCGA-B0-5075 TCGA-B0-5085 TCGA-B0-5399 TCGA-B0-5402 
       78.41        35.47        19.99        25.28        21.44        14.76 
TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 
       79.13        48.89       101.10        15.42        46.68        56.78 
TCGA-B0-5697 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5701 TCGA-B0-5703 
       60.33        84.92        90.08        35.57        56.94        39.52 
TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-5633 
      120.59        48.03        96.36        89.49        61.28        11.77 
TCGA-B2-5635 TCGA-B2-5639 TCGA-B2-A4SR TCGA-B4-5377 TCGA-B4-5834 TCGA-B4-5836 
       10.36        13.71        11.28         9.57         1.25         4.64 
TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4153 TCGA-B8-4621 TCGA-B8-5546 
        0.36         0.23        16.80        25.02        14.17        16.60 
TCGA-B8-5549 TCGA-B8-5553 TCGA-BP-4759 TCGA-BP-4771 TCGA-BP-4965 TCGA-BP-4969 
        6.38        14.30        77.98         5.29        61.51        58.98 
TCGA-BP-4973 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4987 TCGA-BP-4992 TCGA-BP-4995 
       45.50        53.65        14.93        36.95        16.44        45.07 
TCGA-BP-5001 TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4899 TCGA-CJ-5672 TCGA-CJ-5675 
       38.70        64.27        71.87        50.20        72.00        79.86 
TCGA-CJ-5676 TCGA-CJ-5678 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 
       84.66        18.84        18.12        61.91        62.10        73.32 
TCGA-CJ-5686 TCGA-CJ-6028 TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5584 
       67.00        53.42        83.77        92.02        81.83         5.39 
TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5591 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4863 
       85.78        73.18        74.63        75.98        79.89        63.35 
TCGA-CZ-4864 TCGA-CZ-4866 TCGA-CZ-5451 TCGA-CZ-5452 TCGA-CZ-5453 TCGA-CZ-5454 
       93.04        61.38        63.42        58.82         0.82        23.74 
TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5461 
       18.44        55.30        56.91        55.30        47.01        10.85 
TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5467 TCGA-CZ-5470 TCGA-CZ-5982 TCGA-CZ-5984 
       21.76        47.54         2.40        12.69        80.19        67.92 
TCGA-CZ-5985 TCGA-CZ-5986 TCGA-CZ-5987 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 
       65.65        12.26        14.30        62.63        43.69        45.96 
TCGA-DV-5569 TCGA-DV-5575 TCGA-EU-5904 TCGA-EU-5906 
       11.67        33.04        18.08         6.77 

$subtype2
TCGA-B0-5088 TCGA-B0-5812 TCGA-BP-4331 TCGA-BP-4340 TCGA-BP-4789 TCGA-BP-4797 
       14.24        97.41        80.65        18.48        48.95        36.39 
TCGA-BP-4807 TCGA-BP-4959 TCGA-BP-4961 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4975 
        6.94        87.45        63.62         6.71        57.37        47.11 
TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4998 TCGA-BP-5007 TCGA-CJ-4870 TCGA-CJ-4875 
       36.07        33.30        30.61        37.48        49.22        77.36 
TCGA-CJ-4900 
       41.88 

$subtype3
TCGA-A3-3317 TCGA-A3-3387 TCGA-AK-3440 TCGA-AK-3458 TCGA-AK-3465 TCGA-B0-4698 
       49.02        20.25        57.34        38.40        12.13         1.38 
TCGA-B0-4700 TCGA-B0-4712 TCGA-B0-4810 TCGA-B0-4815 TCGA-B0-4821 TCGA-B0-4834 
       65.06        43.96         8.75        49.02        40.41        68.71 
TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-5080 TCGA-B0-5084 TCGA-B0-5400 TCGA-B0-5691 
       40.70        45.30         7.30         7.27        37.22       112.80 
TCGA-B0-5702 TCGA-B0-5706 TCGA-B0-5707 TCGA-B0-5709 TCGA-B2-5636 TCGA-B2-5641 
       52.73        79.36        92.98       102.44         8.71        10.65 
TCGA-B4-5378 TCGA-B4-5832 TCGA-B4-5835 TCGA-B4-5838 TCGA-B8-5545 TCGA-B8-5550 
        5.75         0.23         0.53         5.46        17.16        14.27 
TCGA-B8-5551 TCGA-B8-5552 TCGA-BP-4173 TCGA-BP-4761 TCGA-BP-4770 TCGA-BP-4787 
        0.49        12.89        62.24         5.98        10.82        15.75 
TCGA-BP-4790 TCGA-BP-4804 TCGA-BP-4960 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4974 
       36.53        47.97        71.41        14.20        48.89         7.23 
TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4994 TCGA-BP-5000 
       31.27        25.81        27.19         3.85        42.97        18.51 
TCGA-BP-5008 TCGA-BP-5009 TCGA-CJ-4635 TCGA-CJ-4881 TCGA-CJ-4887 TCGA-CJ-4888 
       35.21        36.23        46.55        66.18        30.61        51.48 
TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-5671 TCGA-CJ-5677 
       63.95        68.55        26.89        39.45        63.85        25.71 
TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6030 TCGA-CJ-6031 
       22.29        25.25        53.26        60.99        75.55        62.63 
TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5588 TCGA-CW-5589 TCGA-CW-5590 TCGA-CW-6087 
        7.36        64.57        66.28        78.15        35.34         1.35 
TCGA-CW-6090 TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 
       83.90        18.74        46.16        47.08        69.21         6.74 
TCGA-CZ-4865 TCGA-CZ-5456 TCGA-CZ-5462 TCGA-CZ-5464 TCGA-CZ-5466 TCGA-CZ-5468 
        5.42        56.28        10.22        57.21        22.52         1.94 
TCGA-CZ-5469 TCGA-CZ-5988 TCGA-DV-5567 TCGA-DV-5568 TCGA-DV-5573 TCGA-DV-5574 
       31.07        22.78        29.88        12.16        37.15        23.77 
TCGA-DV-5576 TCGA-EU-5905 TCGA-EU-5907 
       23.90         3.88         4.14 

subtype1 subtype2 subtype3 
    0.23     6.71     0.23 
subtype1 subtype2 subtype3 
  120.59    97.41   112.80 
subtype1 subtype2 subtype3 
   45.73    41.88    31.27 
[1] "0.2 - 120.6 (45.7)" "6.7 - 97.4 (41.9)"  "0.2 - 112.8 (31.3)"
  [1] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [25] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [55] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[115] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[151] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[217] "subtype1" "subtype3"
  [1] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [25] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [55] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[115] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[151] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[217] "subtype1" "subtype3"
  [1] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [25] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [55] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[115] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[151] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[205] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[211] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[217] "subtype1" "subtype3"
D12V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1      50       16        24       16
  subtype2      12        1         4        2
  subtype3      43        7        19       24
D12V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 51 19 35  1
  subtype2 12  1  5  1
  subtype3 45  7 37  4
D12V4, multiclass
D12V5, binary
          cls
clus        0  1
  subtype1 52  1
  subtype2  7  1
  subtype3 37  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   52    1
  subtype2    7    1
  subtype3   37    6
   clus
vv  subtype1 subtype2 subtype3
  0       52        7       37
  1        1        1        6
D12V6, binary
          cls
clus        0  1
  subtype1 91 15
  subtype2 17  2
  subtype3 71 22
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   91   15
  subtype2   17    2
  subtype3   71   22
    clus
vv   subtype1 subtype2 subtype3
  M0       91       17       71
  M1       15        2       22
D12V7, binary
          cls
clus        0  1
  subtype1 39 67
  subtype2  4 15
  subtype3 22 71
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39   67
  subtype2    4   15
  subtype3   22   71
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       39        4       22
  MALE         67       15       71
D12V8, continuous
D12V9, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 
       2 
character(0)
> q(save="no")
